CMake first working compilation for library

CMakeLists.txt

@@ -3,7 +3,7 @@ project(
   LatAnalyze
   VERSION 3.6
   LANGUAGES C CXX)
-set(CMAKE_CXX_STANDARD 11)
+set(CMAKE_CXX_STANDARD 14)
 
 include(FetchContent)
 include(FindPackageMessage)

lib/CMakeLists.txt

@@ -1,33 +1,37 @@
 set(CMAKE_BUILD_WITH_INSTALL_RPATH TRUE)
 set(CMAKE_INSTALL_RPATH "${CMAKE_INSTALL_LIBDIR}")
 
+configure_file(config.h.in ${CMAKE_CURRENT_BINARY_DIR}/config.h @ONLY)
+
 include(FindBISON)
 include(FindFLEX)
 find_package(BISON REQUIRED)
 find_package(FLEX REQUIRED)
 
-bison_target(AsciiParser LatAnalyze/Io/AsciiParser.ypp
-             ${CMAKE_CURRENT_BINARY_DIR}/AsciiParser.cpp
-             COMPILE_FLAGS "-Wno-deprecated")
+bison_target(
+  AsciiParser LatAnalyze/Io/AsciiParser.ypp
+  ${CMAKE_CURRENT_BINARY_DIR}/AsciiParser.cpp COMPILE_FLAGS "-Wno-deprecated")
 flex_target(AsciiLexer LatAnalyze/Io/AsciiLexer.lpp
             ${CMAKE_CURRENT_BINARY_DIR}/AsciiLexer.cpp)
 add_flex_bison_dependency(AsciiLexer AsciiParser)
 
-bison_target(MathParser LatAnalyze/Core/MathParser.ypp
-             ${CMAKE_CURRENT_BINARY_DIR}/MathParser.cpp
-             COMPILE_FLAGS "-Wno-deprecated")
+bison_target(
+  MathParser LatAnalyze/Core/MathParser.ypp
+  ${CMAKE_CURRENT_BINARY_DIR}/MathParser.cpp COMPILE_FLAGS "-Wno-deprecated")
 flex_target(MathLexer LatAnalyze/Core/MathLexer.lpp
             ${CMAKE_CURRENT_BINARY_DIR}/MathLexer.cpp)
 add_flex_bison_dependency(MathLexer MathParser)
 
 add_library(LatAnalyze SHARED)
 file(GLOB_RECURSE EIGEN_HEADERS Eigen/*)
+target_include_directories(LatAnalyze PRIVATE ${CMAKE_CURRENT_BINARY_DIR})
 target_sources(
   LatAnalyze
   PRIVATE ${BISON_AsciiParser_OUTPUTS}
           ${FLEX_AsciiLexer_OUTPUTS}
           ${BISON_MathParser_OUTPUTS}
           ${FLEX_MathLexer_OUTPUTS}
+          ${CMAKE_CURRENT_BINARY_DIR}/config.h
           LatAnalyze/Core/Exceptions.cpp
           LatAnalyze/Core/Mat.cpp
           LatAnalyze/Core/Math.cpp
@@ -128,4 +132,5 @@ target_sources(
          LatAnalyze/Statistics/XYSampleData.hpp
          LatAnalyze/Statistics/XYStatData.hpp
          LatAnalyze/includes.hpp)
-target_link_libraries(LatAnalyze PUBLIC GSL::gsl HDF5 Minuit2 NLopt)
+target_link_libraries(LatAnalyze PUBLIC GSL::gsl hdf5::hdf5 hdf5::hdf5_cpp
+                                        Minuit2::Minuit2 NLopt::nlopt)

lib/LatAnalyze/Core/Plot.cpp

@@ -72,7 +72,7 @@ string PlotObject::dumpToTmpFile(const DMat &m)
     for (Index j = 0; j < m.cols(); ++j)
     {
     }
-    sprintf(tmpFileName, "%s/latan_plot_tmp.XXXXXX.dat", P_tmpdir);
+    snprintf(tmpFileName, sizeof(tmpFileName), "%s/latan_plot_tmp.XXXXXX.dat", P_tmpdir);
     fd = mkstemps(tmpFileName, 4);
     if (fd == -1)
     {
@@ -699,7 +699,7 @@ Plot & Plot::operator<<(PlotModifier &&modifier)
 
 // find gnuplot ////////////////////////////////////////////////////////////////
 #define SEARCH_DIR(dir) \
-sprintf(buf, "%s/%s", dir, gnuplotBin_.c_str());\
+snprintf(buf, sizeof(buf), "%s/%s", dir, gnuplotBin_.c_str());\
 if (access(buf, X_OK) == 0)\
 {\
     return dir;\

lib/LatAnalyze/Global.cpp

@@ -25,11 +25,10 @@ using namespace Latan;
 
 PlaceHolder Latan::_;
 
-const string Env::fullName  = PACKAGE_STRING;
-const string Env::name      = PACKAGE_NAME;
-const string Env::version   = PACKAGE_VERSION;
-const string Env::msgPrefix = "[" + strFrom(PACKAGE_NAME) + " v"
-                              + strFrom(PACKAGE_VERSION) + "] ";
+const string Env::fullName  = strFrom(PROJECT_NAME) + " v" + strFrom(PROJECT_VERSION);
+const string Env::name      = PROJECT_NAME;
+const string Env::version   = PROJECT_VERSION;
+const string Env::msgPrefix = "[" + Env::fullName + "] ";
 
 void Env::function(void)
 {}

lib/LatAnalyze/Numerical/MinuitMinimizer.cpp

@@ -30,8 +30,12 @@ namespace ROOT
 };
 
 // macros necessary in the ROOT-based version of Minuit2
+#ifndef ROOT_Math_VecTypes
 #define ROOT_Math_VecTypes
+#endif
+#ifndef MATHCORE_STANDALONE
 #define MATHCORE_STANDALONE
+#endif
 
 #include <Minuit2/Minuit2Minimizer.h>
 #include <Math/Functor.h>

lib/LatAnalyze/Statistics/XYSampleData.cpp

@@ -108,15 +108,15 @@ void SampleFitResult::print(const bool printXsi, ostream &out) const
     Index pMax = printXsi ? size() : nPar_;
     DMat  err = this->variance().cwiseSqrt();
     
-    sprintf(buf, "chi^2/dof= %.1e/%d= %.2e -- chi^2 CCDF= %.2e -- p-value= %.2e",
+    snprintf(buf, sizeof(buf), "chi^2/dof= %.1e/%d= %.2e -- chi^2 CCDF= %.2e -- p-value= %.2e",
         getChi2(), static_cast<int>(getNDof()), getChi2PerDof(), getCcdf(), 
         getPValue());
     out << buf << endl;
-    sprintf(buf, "correlation dynamic range= %.1f dB", getCorrRangeDb());
+    snprintf(buf, sizeof(buf), "correlation dynamic range= %.1f dB", getCorrRangeDb());
     out << buf << endl;
     for (Index p = 0; p < pMax; ++p)
     {
-        sprintf(buf, "%12s= % e +/- %e", parName_[p].c_str(),
+        snprintf(buf, sizeof(buf), "%12s= % e +/- %e", parName_[p].c_str(),
                 (*this)[central](p), err(p));
         out << buf << endl;
     }

lib/LatAnalyze/Statistics/XYStatData.cpp

@@ -76,15 +76,15 @@ void FitResult::print(const bool printXsi, ostream &out) const
     char  buf[256];
     Index pMax = printXsi ? size() : nPar_;
     
-    sprintf(buf, "chi^2/dof= %.1e/%d= %.2e -- chi^2 CCDF= %.2e -- p-value= %.2e",
+    snprintf(buf, sizeof(buf), "chi^2/dof= %.1e/%d= %.2e -- chi^2 CCDF= %.2e -- p-value= %.2e",
         getChi2(), static_cast<int>(getNDof()), getChi2PerDof(), getCcdf(), 
         getPValue());
     out << buf << endl;
-    sprintf(buf, "correlation dynamic range= %.1f dB", getCorrRangeDb());
+    snprintf(buf, sizeof(buf), "correlation dynamic range= %.1f dB", getCorrRangeDb());
     out << buf << endl;
     for (Index p = 0; p < pMax; ++p)
     {
-        sprintf(buf, "%12s= %e", parName_[p].c_str(), (*this)(p));
+        snprintf(buf, sizeof(buf), "%12s= %e", parName_[p].c_str(), (*this)(p));
         out << buf << endl;
     }
 }

lib/config.h.in

@@ -0,0 +1,2 @@
+#cmakedefine PROJECT_NAME "@PROJECT_NAME@"
+#cmakedefine PROJECT_VERSION "@PROJECT_VERSION@"