Guido Cossu
5c190a1b8c
Merge branch 'develop' into feature/hirep
2016-09-23 11:06:06 +01:00
Guido Cossu
c4ac6e7e8f
Consolidating HMC interface
...
Uniformed interface for standard action in fundamental rep and Hirep
2016-09-23 10:47:42 +01:00
Guido Cossu
510e340e16
Debugged last commit for the Two index representation
2016-09-22 22:16:21 +01:00
Guido Cossu
b6597b74e7
Added support for the Two index Symmetric and Antisymmetric representations
...
Tested for HMC convergence: OK
Added also a test file showing an example for mixed representations
2016-09-22 14:17:37 +01:00
Antonin Portelli
0724f7af75
QPX single precision implementation
2016-09-19 18:09:12 +01:00
Guido Cossu
0fd179fb33
Merge branch 'develop' into feature/hirep
2016-09-01 12:59:53 +01:00
paboyle
7422953e36
Poisson solver example
2016-08-31 00:42:47 +01:00
paboyle
62febd2823
Wilson prop test
2016-08-31 00:23:09 +01:00
Guido Cossu
fd5614738d
Merge branch 'develop' into feature/hirep
2016-08-30 18:21:36 +01:00
Guido Cossu
b0d3e4bb2c
Separating travis builds
2016-08-30 13:44:07 +01:00
Guido Cossu
b512ccbee6
HMC for Adjoint fermions works
...
Accepts and reproduces known results
Check initial instability of inverters
when starting from hot configurations
2016-08-30 11:31:25 +01:00
paboyle
ff6da364e8
FFT double and single precision gives good performance now in multithreaded code.
2016-08-24 15:05:00 +01:00
paboyle
88be3b39bb
Merge branch 'develop' of https://github.com/paboyle/Grid into develop
2016-08-22 18:29:36 +01:00
paboyle
e423a09974
FFT improved and test_FFT passing under MPI 8 processes, 8^4 for LatticeComplexD and LatticeSpinMatrixD
2016-08-18 02:23:21 +01:00
paboyle
17097a93ec
FFTW test ran over 4 mpi processes.
2016-08-17 01:33:55 +01:00
paboyle
90e70790f3
Feature for z-Mobius prep
2016-08-15 22:31:29 +01:00
Guido Cossu
147e2025b9
Added unit tests on the representation transformations
...
Status: Passing all tests
2016-08-08 16:54:22 +01:00
629283726b
build system: local Grid link flag moved to configure.ac
2016-08-03 15:07:42 +01:00
9e5b934d21
improved LAPACK configuration
2016-08-02 17:26:54 +01:00
Guido Cossu
49b5c49851
Checked the hermiticity of the op in derivative, ok
...
Still CG fails to converge
2016-07-31 12:37:33 +01:00
e9f30cab2c
first working version for the new build system
2016-07-30 17:53:18 +01:00
Guido Cossu
089f0ab582
Debugged HMC for Creutz relation
2016-07-28 16:44:41 +01:00
Guido Cossu
b93e18ed50
Modified the Dirac Kernel class to compile with different number of colours
...
Added the general push_back functionality to accomodate for all defined representations
Compiles, not tested
2016-07-18 16:36:28 +01:00
Guido Cossu
9c77bb69a5
Added all elements for Hirep HMC
...
TODO: Test and debug
2016-07-18 12:05:23 +01:00
paboyle
f9e90eeb1f
Sign error on the force for 4d fields fixed
2016-07-16 01:52:44 +01:00
paboyle
4908b77d46
Fixed conflicts. PLEASE avoid making wholesale cosmetic only changes, this created
...
a HUGE amount of difficult to resolve and understand conflicts .
Wholesale formatting, reordering functions etc... in a central file like Tensor_class
or Grid_vector_types while others are also editing without making substantial functionality
changes creates pain.
2016-07-15 20:59:07 +01:00
paboyle
f4dd5062d7
Merge branch 'develop' of https://github.com/paboyle/Grid into develop
2016-07-15 19:26:06 +01:00
Guido Cossu
7edf4c6c04
Added HMC utitities for the higher representations
...
TODO: Inherit types for the pseudofermions, Debugging, testing
2016-07-15 13:39:47 +01:00
paboyle
35d0d35238
Updated file list
2016-07-15 00:02:53 +01:00
paboyle
c0e878705e
Updated file list
2016-07-15 00:02:39 +01:00
paboyle
3493b51879
Modest updates
2016-07-14 23:52:13 +01:00
paboyle
de3e79d300
red black for Ls vectorised is 4d red black. Update accordingly now I've made this choice
2016-07-14 23:49:42 +01:00
paboyle
adbc7c1188
Adding files for multiple implementations (cache opt) and Ls vectorisation
...
of the 5D cayley form chiral fermions for the 5d matrix. With Ls entirely
in the vector direction, s-hopping terms involve rotations.
The serial dependence of the LDU inversion for Mobius and 4d even odd
checkerboarding is removed by simply applying Ls^2 operations (vectorised
many ways) as a dense matrix operation.
This should give similar throughput but high flops (non-compulsory flops)
but enable use of the KNL cache friendly kernels throughout the code.
Ls is still constrained to be a multiple of Nsimd, which is as much as 8 for AVX512
with single precision.
2016-07-14 22:59:21 +01:00
Guido Cossu
9dc345e8e8
Debugged smearing and adding HMC functions for hirep
2016-07-13 17:51:18 +01:00
Guido Cossu
a9ae30f868
Added representations definitions for the HMC
2016-07-12 13:36:10 +01:00
paboyle
ef97e32152
Adding persistent communicators
2016-07-08 17:16:08 +01:00
Guido Cossu
5028969d4b
Added generators for the adjoint representation
2016-07-08 15:40:11 +01:00
paboyle
a0676beeb1
Open up dependency on Eigen and FFTW
2016-07-07 22:31:07 +01:00
Guido Cossu
3c49ddfaa4
Merge branch 'temporary-smearing' into develop
2016-07-07 14:04:59 +01:00
Guido Cossu
ffb8b3116c
Tested smeared RHMC Wilson1p1, accepting
2016-07-07 11:49:36 +01:00
Christopher Kelly
713520d3d2
Added tester for mixed CG
2016-07-06 16:18:19 -04:00
Christopher Kelly
85ed8175cb
Implemented mixed precision CG. Fixed filelist to exclude lib/Old directory and include Config.h.
2016-07-06 15:57:04 -04:00
Guido Cossu
e87182cf98
Debugged the copy constructor of the Lattice class
2016-07-06 15:31:00 +01:00
Guido Cossu
e3d5319470
Debugged the real() and imag() functions and added tests to Test_Simd
2016-07-06 14:16:03 +01:00
Guido Cossu
3e3b367aa9
Small changes in the Log files
2016-07-05 15:05:28 +01:00
Guido Cossu
9cb90f714e
Merge remote-tracking branch 'origin/develop' into temporary-smearing
2016-07-04 17:28:40 +01:00
Guido Cossu
6ce174cd60
Testing smearing for RHMC routines
2016-07-04 16:36:49 +01:00
Guido Cossu
17ca5240f7
Testet smeared EOWilsonRatio, accepts
2016-07-04 16:25:15 +01:00
Guido Cossu
2daffdf95d
Tested smeared WilsonRatio action, accepts
2016-07-04 16:17:28 +01:00
Guido Cossu
149f826601
Tested smearing for Nf2 WilsonFermionAction, non EO: accepts
2016-07-04 16:09:19 +01:00
Guido Cossu
565e9329ba
Changed the colouring classes
2016-06-30 16:51:03 +01:00
paboyle
8ac021de73
Added a test an fixed it for red black precon Ls innermost vectorised DWF
2016-06-07 13:16:56 -07:00
paboyle
53d06046b0
Compiling updates for KNL
2016-06-03 03:47:54 -07:00
1c4c287925
Make.inc generation fix
2016-05-01 11:18:25 -07:00
paboyle
5341977948
IMCI fixes. Thought I had committed these. The "real" disambiguation
...
between std::real and Grid::real shouldn't have been necessary and I don't
know why only the icpc v16.0 on babbage hits it.
May need a longer term rename of Grid::real or some careful EnableIf work.
2016-04-30 03:34:16 -07:00
344d251fc4
re-fix of test Make.inc
2016-04-30 00:24:50 -07:00
f6c53e5039
Merge commit '1e554350acae0e67fa7177ed0db9d4f684a54af2'
2016-04-30 00:17:52 -07:00
ba09cbae3e
function to read std::vector from a string (blank separated values)
2016-04-30 00:15:44 -07:00
paboyle
8fd8bc25e9
simd 5th dim with rotation
2016-04-19 15:39:00 -07:00
cf2f69812b
build system fix
2016-04-14 15:13:55 +01:00
neo
339be37dba
Debugging smeared HMC
2016-04-13 17:00:14 +09:00
neo
a87b744621
HMC runs but does not accept with smearing on
2016-04-07 16:45:11 +09:00
paboyle
b1192a8908
Benchmark_zmm added
2016-04-06 03:00:07 -07:00
97d0d56bcb
Debugging Smearing routines (set_fj)
2016-04-06 17:58:43 +09:00
4b1cf580e0
Debugging the Smearing routines
2016-04-05 16:19:30 +09:00
paboyle
f7b1060aed
Use headers to clear macros and sub precision
2016-03-31 14:52:37 +01:00
paboyle
1ecbf9794d
Merge branch 'master' of https://github.com/paboyle/Grid
2016-03-30 08:37:55 +01:00
paboyle
2ded354403
configure
2016-03-30 00:17:43 -07:00
paboyle
340428a1fe
Eigen fixes and HDCR work
2016-03-30 00:16:02 -07:00
paboyle
c77b7ee897
AddSub based alternate SU3 routine
2016-03-28 17:55:22 -06:00
paboyle
61469252fe
AVX512 shaken out under SDE
2016-03-28 00:37:12 -06:00
paboyle
02198ac5b5
Tolerance and more coverage
2016-03-28 00:36:17 -06:00
paboyle
165bffc2e7
Avx512 changes for assembler kernels
2016-03-26 22:25:45 -06:00
azusa
f54e0ec9bd
Try lanczos to set up hdcr subspace
2016-03-17 10:36:16 +00:00
paboyle
a155a362da
Update from HDCR tuning
2016-03-16 02:31:04 -07:00
paboyle
090e7aa930
Merge remote-tracking branch 'origin/chulwoo-dec12-2015'
...
Merge Chulwoo's Lanczos related improvements.
Merge Nd!=4 fixes for pure gauge HMC from Evan.
2016-03-08 09:55:14 +00:00
paboyle
2dce9c3cff
HDCR running on 16^3 with 2x-3x speed up.
2016-03-08 01:01:50 -08:00
Jung
1e72bd8b8c
Saving Lanczos testing program
2016-03-08 01:49:16 -05:00
paboyle
dc72293398
More timing info
2016-03-06 10:46:55 -08:00
2d8bb356e3
Smearing routines compile (still untested)
2016-02-25 02:43:59 +09:00
a7251f28c7
Stout smearing compiles (untested)
2016-02-24 03:16:50 +09:00
Jung
9f0d9ade68
Added configure flag for LAPACK. Tested ImplicitlyRestartedLanczos::calc()
...
Checking in before cleaning up
2016-02-20 02:50:32 -05:00
Peter Boyle
b6f6da923e
Change to the compressor & stencil interface a little.
2016-02-17 18:27:11 -06:00
Peter Boyle
7f927a541c
Shmem related fixes for shmem compile
2016-02-11 07:37:39 -06:00
Jung
411ac49dd7
GparityWilsonTM typedef added. Not yet tested
...
Conflicts:
configure
lib/qcd/action/fermion/WilsonKernels.h
2016-01-25 01:36:28 -05:00
Jung
b8fb05a422
Addtional routines for Lanczos (SYM2, Chebyshef)..
2016-01-25 01:26:25 -05:00
Jung
5c57d4f403
Merge branch 'master' of https://github.com/paboyle/Grid into scidac1_2
...
Conflicts:
lib/qcd/action/fermion/WilsonKernels.h
2016-01-11 11:36:45 -05:00
paboyle
d19321dfde
Overlap comms compute changes
2016-01-10 19:20:16 +00:00
paboyle
aae8bf31a7
Global edit adding copyright and license info to every source file.
2016-01-02 14:51:32 +00:00
paboyle
491a708225
Twist params set up correctly in gparity even odd 2f DWF + Wilson HMC test
2016-01-02 14:02:41 +00:00
paboyle
5a80930dd2
Charge conjugation boundary conditions for gauge fields implemented as a policy
...
class, changing the nature of covariant Cshifts used in
plaquettes, rectangles and staples.
As a result same code is used for the plaq and rect action independent of the BC type.
Should probably isolate the BC in a separate class that Gimpl takes as a template param.
Do the same with smearing policies.
This would then allow composition of BC with smearing etc....
2016-01-02 13:37:25 +00:00
paboyle
145a295231
Bug fix for stencil with large shifts (3+), would be important to naik term for example but did not
...
impact Wilson based nearest neighbour stencils.
2015-12-30 19:29:48 +00:00
Azusa Yamaguchi
78c4e862ef
Plaq, Rectangle, Iwasaki, Symanzik and DBW2 workign and HMC regresses to http://arxiv.org/pdf/hep-lat/0610075.pdf
2015-12-28 16:38:31 +00:00
paboyle
0afcf1cf13
Moved all the HMC tests over to using a single HmcRunner class that manages checkpoint strategies and such like
2015-12-22 11:19:25 +00:00
paboyle
08edbb5cbe
HMC bit repro across checkpoints. Fixed parallel RNG issue with threading.
...
Conclusion: c++11 distributions not thread safe and must us distinct dist as well as distinct engine
per site. Makes sense when you think of box muller. Also added a reset of dist on fill to ensure
repro across checkpoints.
2015-12-22 08:54:40 +00:00
paboyle
31ca609d12
HMC checkpointing .
...
Need a general HMC framework to work in restart.
2015-12-20 02:29:51 +00:00
paboyle
5710966324
Options to use mersenne twister OR ranlux48 via --enable-rng flag at configure time.
...
Can save and restore RNG state via new (serial) I/O routines in a NERSC header style file.
Store a Parallel (one per site) and a single serial RNG file.
2015-12-19 18:32:25 +00:00
paboyle
e108e708a3
Wilson TM tests and compiles in
2015-12-17 23:06:33 +00:00
paboyle
67ccb043f1
Added TM fermions for DSDR etc..
2015-12-17 22:34:28 +00:00
paboyle
34a0fde2ad
Fixes to fermion force terms after sign of gamma_mu (0...3) change.
...
Thought I had already committed these.
Believe I have got the Gparity fermion force working.
* tests/Test_gpdwf_force.cc -- correctly predicts dS for two flavour pseudofermion
based on a small dt update of U field.
* tests/Test_hmc_EODWFRatio_Gparity.cc -- ran 1 trajectory on 8^4 with dH=0.21.
Need to accumulate a full plaquette log to believe fully which will take some hours of run time.
2015-12-15 23:14:12 +00:00
paboyle
af855cc129
Updating to fix peek poke to checkerboarded arrays since Chulwoo needs this.
2015-12-12 07:11:46 +00:00
paboyle
47fe6b5a7c
Merge branch 'master' of https://github.com/aportelli/Grid into aportelli-master
2015-12-10 23:14:52 +00:00
paboyle
b3ef09a54d
Merge branch 'master' of https://github.com/paboyle/Grid
2015-12-10 23:05:38 +00:00
paboyle
8ed3940048
New files for Chroma regression
2015-12-10 22:55:59 +00:00
paboyle
3ce10aa975
Fix a regression failure on Mobius; chroma regression added
2015-12-10 22:55:00 +00:00
Azusa Yamaguchi
a32a59fc43
Merge branch 'master' of https://github.com/paboyle/Grid
2015-12-09 12:48:44 +00:00
200de272ed
IO: serialisable enums
2015-12-08 13:54:00 +00:00
Peter Boyle
26161addd0
Warn fix clang
2015-11-29 11:19:12 +00:00
paboyle
93356fd246
No compile fixes on gcc/Cray
2015-11-29 03:14:44 -08:00
Peter Boyle
f35fc4b76c
No compile fixes
2015-11-29 10:59:11 +00:00
paboyle
ca42fe6d32
Merge branch 'master' of github.com:paboyle/Grid
...
Merge done
Conflicts:
lib/serialisation/XmlIO.h
tests/Test_stencil.cc
2015-11-28 17:03:43 -08:00
paboyle
b8a38f292d
Domain decomposition SAP precon implemented and working but not as fast as I hoped.
2015-11-28 17:01:51 -08:00
Peter Boyle
bc4b252883
Merge branch 'master' of https://github.com/paboyle/Grid
2015-11-29 00:33:01 +00:00
Peter Boyle
fff0f00552
Modest changes
2015-11-29 00:31:57 +00:00
Peter Boyle
42e6055746
Try 1/x for hermitian indef approx
2015-11-29 00:31:19 +00:00
Peter Boyle
01231ce824
Stencil fix
2015-11-29 00:31:02 +00:00
Peter Boyle
41e8038c56
Makefile update
2015-11-29 00:30:19 +00:00
Azusa Yamaguchi
967be91692
update merge
2015-11-26 09:51:41 +00:00
06f8ecea04
Merge commit '899ca41cb8c8f47771bfd37cd895cbc2184e5560'
2015-11-16 18:16:25 +00:00
af19118113
new I/O interface
2015-11-16 18:14:37 +00:00
paboyle
7522e3f0dd
Stencil interface change fix no compile
2015-11-07 00:05:10 -08:00
Peter Boyle
f85b9ddd97
Remove nonfunctioning lanczos
2015-11-06 05:21:21 -06:00
paboyle
16c7993434
Merge branch 'master' of github.com:paboyle/Grid
...
Conflicts:
lib/simd/Grid_avx512.h
lib/simd/Grid_imci.h
2015-11-04 03:32:10 -08:00
paboyle
5aafdd7e1a
Inline asm for KNL, KNC, Skylake Xeon
2015-11-04 03:21:15 -08:00
Peter Boyle
dfc1de6f60
Merge branch 'master' of github.com:paboyle/Grid
2015-11-04 05:14:26 -06:00
Peter Boyle
f87526a04f
Make ICC happy
2015-11-04 05:14:03 -06:00
Peter Boyle
9183920e8b
Added an even odd stencil test, shook out a problem with spread out x-direction.
...
Generalise test to allow different types of "Field" to be used.
2015-11-04 10:03:04 +00:00
Peter Boyle
01f286c9fe
Better testing for red black cshift which was sufficient to chase down a spread out x-direction problem.
2015-11-04 10:02:17 +00:00
1b22ce5720
tests Make.inc fix
2015-10-27 10:47:52 +00:00
Peter Boyle
41299da406
files added
2015-10-09 01:01:46 +02:00
Peter Boyle
2d95dac6b6
Lanczos untested/partially tested additions. In middle of shake out but at least compiles
2015-10-09 00:40:25 +02:00
Peter Boyle
44fecd4d8d
Lanczos test
2015-10-09 00:39:21 +02:00
paboyle
3a478e5f2a
No compile babbage fix
2015-09-30 16:03:05 -07:00
Peter Boyle
9f4f65cb46
Added a decoupled memory system benchmark to remove thread synch overhead
2015-09-26 18:23:57 -07:00
Peter Boyle
5ef42add2d
Changes to remove warnings under icc; disambiguate AVX512 from IMCI correctly
...
and drop swizzles in AVX512. Don't know why these compiled.
2015-09-23 05:23:45 -07:00
Peter Boyle
2f38ebc446
Reintroducing the hand unrolled loops
2015-09-08 17:45:30 +01:00
Peter Boyle
357c6ab46d
Reunitarise. Complete the HMC and integrator changes.
2015-08-31 16:32:04 +01:00
Peter Boyle
755dca9533
Added ForceGradient integrator. dH dropped so seems to work. Will only
...
believe it is right once I have pulled a dt^4 error scaling plot out.
2015-08-31 06:23:02 +01:00
Peter Boyle
29fd004d54
Unified integrator and integrator algorithm into virtual class used as a policy for the
...
HMC.
2015-08-30 13:39:19 +01:00
Peter Boyle
aa52fdadcc
Global edit on HMC sector -- making GaugeField a template parameter and
...
preparing to pass integrator, smearing, bc's as policy classes to hmc.
Propose to unify "integrator" and integrator algorithm in a base/derived
way to override step. Want to read through ForceGradient to ensure
that abstraction covers the force gradient case.
2015-08-30 12:18:34 +01:00
Peter Boyle
76d752585b
Started a tidy up in the HMC sector. Now comfortable with the two level integrators;
...
to a little figure out what Guido had done & why -- but there is a neat saving of force
evaluations across the nesting time boundary making use of linearity of the leapP in dt.
I cleaned up the printing, reduced the volume of code, in the process sharing printing
between all integrators. Placed an assert that the total integration time for all integrators
must match at end of trajectory.
Have now verified e-dH = 1 for nested integrators in Wilson/Wilson runs with both
Omelyan and with Leapfrog so substantial confidence gained.
2015-08-29 17:18:43 +01:00
Peter Boyle
dc814f30da
Binary IO file for generic Grid array parallel I/O.
...
Number of IO MPI tasks can be varied by selecting which
dimensions use parallel IO and which dimensions use Serial send to boss
I/O.
Thus can neck down from, say 1024 nodes = 4x4x8x8 to {1,8,32,64,128,256,1024} nodes
doing the I/O.
Interpolates nicely between ALL nodes write their data, a single boss per time-plane
in processor space [old UKQCD fortran code did this], and a single node doing all I/O.
Not sure I have the transfer sizes big enough and am not overly convinced fstream
is guaranteed to not give buffer inconsistencies unless I set streambuf size to zero.
Practically it has worked on 8 tasks, 2x1x2x2 writing /cloning NERSC configurations
on my MacOS + OpenMPI and Clang environment.
It is VERY easy to switch to pwrite at a later date, and also easy to send x-strips around from
each node in order to gather bigger chunks at the syscall level.
That would push us up to the circa 8x 18*4*8 == 4KB size write chunk, and by taking, say, x/y non
parallel we get to 16MB contiguous chunks written in multi 4KB transactions
per IOnode in 64^3 lattices for configuration I/O.
I suspect this is fine for system performance.
2015-08-26 13:40:29 +01:00
Peter Boyle
476da3ee62
Separated IO reader/writers into a proper abstract base,
...
derived relationship. Have Text/Binary/Xml versions of
Reader & Writer.
Any new Reader/Writer class inheriting the interface can give object serialisation
to any desired format now.
new file: lib/serialisation/BaseIO.h
modified: lib/serialisation/BinaryIO.h
modified: lib/serialisation/Serialisation.h
modified: lib/serialisation/TextIO.h
modified: lib/serialisation/XmlIO.h
The test uses the Xml, Binary and Text formats as well as cout << Object.
2015-08-21 10:06:33 +01:00
Peter Boyle
35818fdf6c
Text and Binary readers
2015-08-20 23:04:38 +01:00
Peter Boyle
ab81a25073
XMLReader implementation and a virtual Reader/Writer template framework.
...
Test_serialisation has an example of *code* *free* object serialisation
to both ostream and to XML using macro magic.
Implementing TextReader/TextWriter, YAML, JSON etc.. should be trivial
and we can use configure time options to select the default "Reader" typedef.
Present done with
"using XMLPolicy::Reader"
to pick up the default serialisation strategy.
2015-08-20 16:21:26 +01:00
Peter Boyle
8b070ae54c
Gparity now accepting twists through constructor
2015-08-19 11:26:01 +01:00
Peter Boyle
4e085dd0ed
Domain wall even-odd 2f HMC with wilson gauge and PV 2f ratio now running and giving small dH.
...
Azusa is working hard on the rectangle term and we'll hopefully start reproducing plaquettes
from RBC-UKQCD parameters soon !
My new laptop is pretty warm and is starting to groan ;)
2015-08-19 10:26:07 +01:00
Peter Boyle
e8d63c9178
Merge branch 'master' of https://github.com/paboyle/Grid
2015-08-19 05:49:00 +01:00
Peter Boyle
c54c086f17
Even odd preconditioned one flavour ratio
...
(no support for non-const EE schur block)
2015-08-19 05:46:58 +01:00
Peter Boyle
dd6bb73ee0
Added one flavour rational ratios (unprec)
2015-08-19 04:58:40 +01:00
