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160 Commits
Author SHA1 Message Date
Peter Boyle df908ee872 3 level dense 2026-08-11 17:50:12 -04:00
Peter Boyle 84715ff4b9 Default to fast path 2026-08-11 17:39:12 -04:00
Peter Boyle 5792195073 Check in codes used at time of Lattice conference for PVdagM multigrid 2026-08-11 16:35:42 -04:00
Peter Boyle fb5662a449 Setup on Frontier 2026-08-11 16:35:42 -04:00
Peter Boyle 6b2ad3db80 Inverse improvements. Need to make this properly recursive 2026-08-11 16:35:42 -04:00
Peter Boyle f1a969f0c3 Evict all optoin 2026-08-11 16:35:42 -04:00
Peter Boyle f18320a152 GeneralCoarsenedMatrix speed up -- same optimisations for fast
calculation used by GeneralCoarsenedMatrixMultiRHS
2026-08-11 16:35:42 -04:00
Peter Boyle bfcde59199 Memory manager improvements 2026-08-11 16:35:42 -04:00
Peter Boyle f23e9e70cd Global orthogonalise routine 2026-08-11 16:35:42 -04:00
Peter Boyle 06fcd31da0 Verbose options 2026-08-11 16:35:42 -04:00
Peter Boyle 7e4fe99b1e Logging update 2026-08-11 16:35:42 -04:00
Peter Boyle 159ea3d64d Better logging performance 2026-08-11 16:35:42 -04:00
Peter Boyle 1f55c13bc4 Test script for Frontier on I/O 2026-08-11 13:37:50 -04:00
Peter Boyle d68b111d06 Switch on the faster IO be default 2026-08-11 13:36:50 -04:00
Peter Boyle 41f5a02204 IO updates for AllToAllV aggregation of contiguous chunks.
May finally clean up the poor MPI2 IO performance issue that has been persistent.
2026-08-11 13:33:04 -04:00
Peter Boyle 7647576863 Sourceme's for frontier 2026-06-26 11:50:44 -04:00
Peter Boyle f11ba18df2 Remove accelerator_inline on CPU only code 2026-06-17 20:47:15 +02:00
Peter Boyle cf8587e401 Update booster compiule 2026-06-17 20:46:53 +02:00
Peter Boyle 7dd35ef749 Make disable accelerator aware mpi compile for CUDA 2026-06-17 20:46:14 +02:00
Peter Boyle 41e570ddce Annoying old CPU perfmon code should be removed or deprecated as not
worth maintaining
2026-06-17 20:45:32 +02:00
Peter Boyle a452131b50 Print improvement 2026-06-17 20:45:04 +02:00
Peter Boyle 4e49ca55ab Merge branch 'develop' of https://github.com/paboyle/Grid into develop 2026-06-16 11:20:12 -07:00
Peter Boyle c3f4474401 Adding Mattia's memory leak test 2026-06-16 11:19:36 -07:00
Peter BoyleandGitHub 3d3eff86f3 Modify move assignment operator to be noexcept
Add noexcept specifier to move assignment operator.
2026-06-11 09:44:24 -04:00
Peter BoyleandGitHub fc9f154ac1 Modify Lattice move constructor to be noexcept
Add noexcept specifier to move constructor for Lattice class.
2026-06-11 09:40:06 -04:00
Peter BoyleandGitHub 4aa0bca4dc Change sum operation to use gpucub mistake in PR from Chris
Updated the sum operation definition for GPU reduction to use gpucub instead of cub.
2026-06-01 14:12:25 -04:00
Peter Boyle 905da6f083 Merge branch 'feature/reduction-reorganisation' into develop 2026-05-27 21:01:30 -04:00
Peter Boyle 86c7f29183 Config command update 2026-05-27 16:19:33 -04:00
Peter Boyle b0c99f876e Configure on mac update 2026-05-27 16:16:55 -04:00
Peter Boyle bf5fcdc860 Ease of use for std::complex interchangable with thrust 2026-05-27 16:05:37 -04:00
Peter Boyle b58a1508fa Perlmutter cuda version update 2026-05-21 13:25:13 -07:00
Peter Boyle 4d527e81fa Remove hip specific files 2026-05-21 12:34:30 -04:00
Peter BoyleandClaude Sonnet 4.6 7803580aa6 Lattice_reduction_gpu: demote timing logs to Debug, disable by default
skills/mpi-heterogeneous: add Bug Class 4 for Frontier GTL/libamdhip64 ABI mismatch

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-05-21 12:34:30 -04:00
Peter BoyleandClaude Sonnet 4.6 32654db366 Test_planned_fft: fix PlannedFFT template parameter to use ::vector_object
Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-05-21 12:34:30 -04:00
Peter BoyleandClaude Sonnet 4.6 cd340cfab3 tests: add Test_planned_fft exercising PlannedFFT<vobj>
Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-05-21 12:34:30 -04:00
Peter BoyleandClaude Sonnet 4.6 f32866b2ff tests/fft: remove PlanDestroy calls (FFT handles plans per-call)
Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-05-21 12:34:30 -04:00
Peter BoyleandClaude Sonnet 4.6 1cd1dc091e FFT: add FFTbase, PlannedFFT; factor FFT_dim_execute free function
Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-05-21 12:34:30 -04:00
Peter BoyleandClaude Sonnet 4.6 0493656e86 debug: add Test_hipfft_repro — reproducer for hipFFT PARSE_ERROR on ROCm 7
Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-05-21 12:34:30 -04:00
Peter BoyleandClaude Sonnet 4.6 66fd504c4d tests/debug: add G=4 to hipfft fail reproducer
Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-05-21 12:34:30 -04:00
Peter BoyleandClaude Sonnet 4.6 be4dd2b52f tests/debug: test hipMemset variant before cache is populated
Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-05-21 12:34:30 -04:00
Peter BoyleandClaude Sonnet 4.6 707d059766 tests/debug: extend hipfft fail reproducer with hipMemset and sync variants
Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-05-21 12:34:30 -04:00
Peter BoyleandClaude Sonnet 4.6 f08c755ae6 FFT: use host stack buffer in PlanCreate, not deviceVector
Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-05-21 12:34:30 -04:00
Peter BoyleandClaude Sonnet 4.6 dbbfdd4e4b tests/debug: add minimal hipfft ordering bug fail/pass pair
Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-05-21 12:34:30 -04:00
Peter BoyleandClaude Sonnet 4.6 f967fb40bf tests/debug: test plan-before-malloc vs malloc-before-plan ordering
Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-05-21 12:34:30 -04:00
Peter BoyleandClaude Sonnet 4.6 74e0f846cb tests/debug: extend hipfft reproducer with Grid-realistic howmany and exec tests
Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-05-21 12:34:30 -04:00
Peter BoyleandClaude Sonnet 4.6 303a4d26e5 tests/debug: add minimal hipfft plan-creation reproducer
Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-05-21 12:34:30 -04:00
Peter Boyle 119888653c FFT HIP: use hipfftCreate+hipfftMakePlanMany instead of hipfftPlanMany 2026-05-21 12:34:30 -04:00
Peter Boyle a9f42c08f9 FFT: pass nullptr for inembed/onembed in hipfftPlanMany to avoid HIPFFT_PARSE_ERROR 2026-05-21 12:34:30 -04:00
Peter BoyleandClaude Sonnet 4.6 e79adc9d31 FFT: cache plans per vobj type across calls
Plans are created lazily on the first FFT_dim call and reused for all
subsequent calls on the same FFT object.  PlanCreate<vobj>() can be
called explicitly to pre-warm the cache.  PlanDestroy() must be called
before switching to a different vobj type; the destructor cleans up any
live plans automatically.

Update Test_fft.cc and Test_fftf.cc to call PlanDestroy() between the
LatticeComplex and LatticeSpinMatrix sections that reuse the same FFT object.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-05-21 12:34:30 -04:00
Peter BoyleandClaude Sonnet 4.6 5a9056cd93 Accelerator: lower default accelerator_threads from 16 to 8
Benchmark_dwf_fp32 on MI250X GCD: 1.7 TF/s at nt=8, ~300 GF/s at nt=16.
With Nsimd=8 (fp32, GEN_SIMD_WIDTH=64B), nt=8 gives exactly 64 threads =
one full AMD wavefront. Higher values double register demand per block and
hit a register-pressure cliff for stencil kernels.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-05-21 12:34:30 -04:00
Peter Boyle 012c36ab5a Accelerator: raise default accelerator_threads from 2 to 16 2026-05-21 12:34:30 -04:00
Peter BoyleandClaude Sonnet 4.6 5c4574f9aa skills: add gpu-memory-performance.md
Documents the acceleratorThreads() default=2 trap, LambdaApply thread
mapping, coalescedRead/Write idiom, when to use __global__ vs
accelerator_for, and fused vs staged HBM access patterns.

Includes observed MI250X numbers from LatticePropagatorD reduction
(50 → 297 → 546 GB/s progression).

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-05-21 12:34:30 -04:00
Peter BoyleandClaude Sonnet 4.6 a424775884 sumD_gpu_reduce_words: fuse pack+reduce into single packReduceKernel
Replace the two-kernel pack+reduce sequence with a single fused kernel
packReduceKernel<R> that reads R words of each vobj at offset 'base'
and accumulates directly into iVector<iScalar<scalarD>,R>, eliminating
the intermediate bundle buffer entirely.

HBM access per word-group drops from 3x (pack-read + pack-write +
reduce-read) to 1x.  Thread count comes from getNumBlocksAndThreads
(warpSize..256) rather than acceleratorThreads(), so occupancy is
correct regardless of the --accelerator-threads setting.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-05-21 12:34:30 -04:00
Peter Boyle d6b1388741 Modified repack 2026-05-21 12:34:30 -04:00
Peter BoyleandClaude Sonnet 4.6 796c6cae4e Enable GRID_REDUCTION_TIMING unconditionally
Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-05-21 12:34:30 -04:00
Peter BoyleandClaude Sonnet 4.6 1a8064d6d9 Lattice_reduction_gpu: add GRID_REDUCTION_TIMING instrumentation
Uncomment #define GRID_REDUCTION_TIMING to enable per-phase timing output:

  sumD_gpu_reduce_words: pack time (accelerator_for) per R and base
  sumD_gpu_small:        reduceKernel+barrier time and D2H time separately
  sumD_gpu_large:        total wall time across all word groups

This lets us identify whether the large-type bottleneck is in the pack
kernel, the shared-memory reduction kernel, the barrier, or the D2H.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-05-21 12:34:30 -04:00
Peter BoyleandClaude Sonnet 4.6 43648924c3 sumD_gpu_large: radix-12 word-bundle reduction replacing radix-1
Replace the word-by-word loop (one kernel launch per scalar word) with
sumD_gpu_reduce_words<R> which packs R consecutive vector_type words per
site into iVector<iScalar<vector>,R>, then calls the existing sumD_gpu_small
shared-memory kernel once for the whole bundle.

Dispatch: radix-12 first, radix-4 for the remainder < 12, radix-1 for
any final < 4 words.  For LatticePropagator (144 words = 12x12), this
reduces the kernel-launch count from 144 to 12 -- a 12x reduction.

Bundle::Nsimd() inherits from vector_type so sumD_gpu_small handles SIMD
lane extraction and double-precision promotion identically to the scalar
word case.  sizeof(Bundle::scalar_objectD) = R*16 <= 192 B; well within
sharedMemPerBlock on all supported devices.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-05-21 12:34:30 -04:00
Peter BoyleandClaude Sonnet 4.6 bf2140e74d Lattice_reduction_sycl: fix double-precision accumulation in sumD_gpu_tensor
Accumulate in sobjD throughout rather than accumulating in sobj and
converting the final sum. For float fields this matters: summing N floats
then casting loses O(N*eps_float) relative precision vs accumulating in
double from the start.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-05-21 12:34:30 -04:00
Peter BoyleandClaude Sonnet 4.6 a1119266c1 Revert to hand-rolled reduction; drop Lattice_reduction_gpu_cub.h
Remove the CUB/hipCUB direction entirely. Restore Lattice_reduction_gpu.h,
Lattice_reduction_sycl.h, and Lattice_reduction.h to the state before the
CUB rewrite (commit 969b0a39), recovering the original primary function names
(sumD_gpu_small, sumD_gpu_large, sumD_gpu, sum_gpu, sum_gpu_large) and the
hand-rolled shared-memory reduction kernel.

Delete Lattice_reduction_gpu_cub.h. Update Test_reduction to remove the
old/new comparison sections that depended on sum_gpu_old.

The lesson: CUB DeviceReduce is slower than the hand-rolled kernel for small
types, and the smem sizing problem for the extraction pass has no clean
solution within the accelerator_for abstraction. The right improvement is
a higher radix (12 then 4) in sumD_gpu_large, applied directly to the
existing hand-rolled kernel.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-05-21 12:34:30 -04:00
Peter BoyleandClaude Sonnet 4.6 a0f00c0eca sumD_gpu_direct: revert to per-lane write; CUB handles Nsimd*osites inputs
Benchmarking showed the shared-memory lane-summation approach (843d6497)
was slower than writing each SIMD lane individually and letting CUB reduce
the full nlanes = osites*Nsimd array. CUB's device reduce is more efficient
over the larger input than the smem overhead + serialised lane-0 summation.
The smem approach also required overriding acceleratorThreads() to avoid
the block-size sizing problem. Restore the simpler per-lane path.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-05-21 12:34:30 -04:00
Peter BoyleandClaude Sonnet 4.6 d358954a84 sumD_gpu_direct: shared-memory lane reduction with acceleratorThreads(1)
Set acceleratorThreads to 1 before the extraction kernel so that
dim3(nsimd,1,1) blocks give exactly one site group per block and
__shared__ sobjD smem[nsimd] is correctly sized without depending on
the runtime acceleratorThreads() value. threadIdx.x (acceleratorSIMTlane)
indexes the SIMD lane for coalesced reads; lane 0 sums smem[0..nsimd-1]
and writes one sobjD per site. CUB then reduces osites elements instead
of osites*nsimd, reducing both store traffic and CUB work by Nsimd.
acceleratorSynchronise() (warp-level) suffices since nsimd < warpSize.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-05-21 12:34:30 -04:00
Peter BoyleandClaude Sonnet 4.6 aee00bdfb5 sumD_gpu_direct: one thread per SIMD lane using extractLane
Replaces one thread per outer site calling Reduce() (sequential Nsimd-wide
loop) with one thread per lane calling extractLane() — O(1) per thread.
CUB now reduces over osites*Nsimd elements. Avoids serial lane reduction
but leaves the per-lane sobjD store stride as a known remaining concern.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-05-21 12:34:30 -04:00
Peter BoyleandClaude Sonnet 4.6 cf324b0fa1 Lattice_reduction_gpu_cub: define GRID_REDUCTION_TIMING in header
Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-05-21 12:34:30 -04:00
Peter BoyleandClaude Sonnet 4.6 b314dc224d Lattice_reduction_gpu_cub: add GRID_REDUCTION_TIMING instrumentation
Guards accelerator_for and CUB DeviceReduce calls in sumD_gpu_direct
and sumD_gpu_large with #ifdef GRID_REDUCTION_TIMING to isolate where
time is spent in each path. Large path accumulates across all groups
and prints totals with words/nfull/rem context.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-05-21 12:34:30 -04:00
Peter BoyleandClaude Sonnet 4.6 1bbd62498e Lattice_reduction_gpu_cub: replace WordBundle4 with iVector<iScalar<scalarD>,4>
WordBundle4 was redundant with Grid's existing tensor infrastructure.
iVector<iScalar<scalarD>,4> already provides accelerator_inline operator+,
zeroit(), and sycl::is_device_copyable — no new type needed.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-05-21 12:34:30 -04:00
Peter BoyleandClaude Sonnet 4.6 f3c3b1c04b Test_reduction: add timing benchmark for new vs old reduction paths
Reports us/call and GB/s for sum_gpu (CUB/sycl::reduction) and
sum_gpu_old (hand-rolled shared-memory) for each field type, with
5-call warmup and 100-call timed loop.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-05-21 12:34:30 -04:00
Peter BoyleandClaude Sonnet 4.6 069f98b253 skills: HPC battle-hardening skill files for GPU+MPI correctness
Six skill files encoding expertise for making codebases robust on
problematic HPC systems, covering: correctness verification
(double-run, fingerprinting, flight recorder), hang diagnosis,
GPU runtime correctness (premature barrier, infinite poll),
MPI correctness on heterogeneous systems (device buffer aliasing,
AARCH64 PLT corruption, deterministic reductions),
compiler validation, and communication/computation overlap pipeline
design.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-05-21 12:34:30 -04:00
Peter BoyleandClaude Sonnet 4.6 dfd0503eae Test_reduction: use separate float and double grids
Float fields require a grid constructed with vComplexF::Nsimd(); using
a double grid causes grid->_gsites to undercount the sites in float
vobjF, making the constant-field expected value wrong.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-05-21 12:34:30 -04:00
Peter BoyleandClaude Sonnet 4.6 c629b2e87e Rename scalarNorm2 to squaredSum in Test_reduction.cc
The function computes |sum|^2 — the squared magnitude of an aggregate sum —
not a norm. squaredSum makes clear that squaring is applied to the sum, not
to individual site values before summing, distinguishing it from sumOfSquares
(the squared L2 norm).

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-05-21 12:34:30 -04:00
Peter BoyleandClaude Sonnet 4.6 7c8462abd1 Fix Zero() used on thrust::complex in WordBundle4 initialisation
Grid's Zero() sentinel is not assignable to thrust::complex<double>;
use scalarD(0) instead.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-05-21 12:34:30 -04:00
Peter BoyleandClaude Sonnet 4.6 95a6a0bde7 Reinstate large/small dispatch in CUB reduction path; radix-4 word-bundle for large types
rocPRIM's DeviceReduce requires warpSize(64) threads each holding one element in shared
memory, so sizeof(T)*64 must fit in sharedMemPerBlock.  LatticePropagator::scalar_objectD
is 2304 bytes (64*2304 = 147 KB), exceeding the budget and triggering a compile-time
static_assert in limit_block_size.

Introduce sumD_gpu_direct (the original direct-CUB path, safe for small types) and a new
sumD_gpu_large that groups the vobj's vector_type words in bundles of 4, reducing each
bundle as WordBundle4<scalarD> (64 bytes, 64*64 = 4 KB — always within budget).  If
words % 4 != 0, the final partial bundle is zero-padded.  sumD_gpu dispatches at compile
time via if constexpr on sizeof(sobjD) > 512.

For LatticePropagator (144 words) this gives 36 CUB launches instead of 144.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-05-21 12:34:30 -04:00
Peter BoyleandClaude Sonnet 4.6 bba328fac5 Add Test_reduction to tests/debug
Tests the new CUB/hipCUB/SYCL lattice reduction (sum_gpu) against the
preserved hand-rolled implementation (sum_gpu_old) for LatticeComplexF/D,
LatticeColourMatrixF/D and LatticePropagatorF/D.

Part a) gaussian random field: checks that old and new agree to within
float/double roundoff tolerance.
Part b) constant field (= 1.0, identity-matrix init): verifies
innerProduct(sum, sum) = Ncomp * V^2 where Ncomp counts the nonzero
diagonal scalar components per site (1 / Nc / Ns*Nc respectively).

Make.inc is auto-generated by scripts/filelist on bootstrap and is not
tracked; the new .cc file is all that is needed.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-05-21 12:34:30 -04:00
Peter BoyleandClaude Sonnet 4.6 41362349f3 Rewrite lattice GPU reduction to use CUB, hipCUB, and SYCL reduction
Replace hand-rolled shared-memory reduction kernels (reduceBlock/reduceBlocks/
reduceKernel) and the global device variable retirementCount with a unified
CUB/hipCUB DeviceReduce::Reduce path for CUDA/HIP and sycl::reduction for SYCL.
No small/large split is needed: both CUB and sycl::reduction handle arbitrary
object sizes internally.

Old implementations preserved as sum_gpu_old / sumD_gpu_old etc. in the
original files for regression testing on GPU hardware.

Also add CLAUDE.md with build, test, and architecture guidance.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-05-21 12:34:30 -04:00
Peter Boyle 12e3499b6d Updated rocm 7 compile for ORNL 2026-05-21 12:28:42 -04:00
Peter Boyle 9576011011 Changed setup for ROCM 7, nasty LD_LIBRARY_PATH issues were committing
evils
2026-05-21 12:28:04 -04:00
Peter Boyle 155b34c1aa File list lost 2026-05-21 12:06:01 -04:00
Peter BoyleandClaude Sonnet 4.6 982ffe9ebe Lattice_reduction_gpu: demote timing logs to Debug, disable by default
skills/mpi-heterogeneous: add Bug Class 4 for Frontier GTL/libamdhip64 ABI mismatch

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-05-21 12:05:36 -04:00
Peter BoyleandClaude Sonnet 4.6 0251ecaeab Test_planned_fft: fix PlannedFFT template parameter to use ::vector_object
Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-05-20 18:13:38 -04:00
Peter BoyleandClaude Sonnet 4.6 372a27d645 tests: add Test_planned_fft exercising PlannedFFT<vobj>
Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-05-20 17:59:24 -04:00
Peter BoyleandClaude Sonnet 4.6 72b4a061f3 tests/fft: remove PlanDestroy calls (FFT handles plans per-call)
Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-05-20 17:54:41 -04:00
Peter BoyleandClaude Sonnet 4.6 29198efabe FFT: add FFTbase, PlannedFFT; factor FFT_dim_execute free function
Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-05-20 17:53:17 -04:00
Peter BoyleandClaude Sonnet 4.6 50aa51f93a debug: add Test_hipfft_repro — reproducer for hipFFT PARSE_ERROR on ROCm 7
Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-05-19 22:27:27 -04:00
Peter BoyleandClaude Sonnet 4.6 79ccc81a86 tests/debug: add G=4 to hipfft fail reproducer
Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-05-19 22:21:52 -04:00
Peter BoyleandClaude Sonnet 4.6 3f0fdbb597 tests/debug: test hipMemset variant before cache is populated
Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-05-19 22:10:16 -04:00
Peter BoyleandClaude Sonnet 4.6 ea57bd8f03 tests/debug: extend hipfft fail reproducer with hipMemset and sync variants
Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-05-19 22:02:02 -04:00
Peter BoyleandClaude Sonnet 4.6 bdba5b8403 FFT: use host stack buffer in PlanCreate, not deviceVector
Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-05-19 21:49:06 -04:00
Peter BoyleandClaude Sonnet 4.6 58cc6ca9c0 tests/debug: add minimal hipfft ordering bug fail/pass pair
Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-05-19 21:48:23 -04:00
Peter BoyleandClaude Sonnet 4.6 e5996b440d tests/debug: test plan-before-malloc vs malloc-before-plan ordering
Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-05-19 21:40:17 -04:00
Peter BoyleandClaude Sonnet 4.6 ad9d03fd85 tests/debug: extend hipfft reproducer with Grid-realistic howmany and exec tests
Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-05-19 19:19:59 -04:00
Peter BoyleandClaude Sonnet 4.6 4de160ce20 tests/debug: add minimal hipfft plan-creation reproducer
Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-05-19 17:52:59 -04:00
Peter Boyle fc8c8ce6e7 FFT HIP: use hipfftCreate+hipfftMakePlanMany instead of hipfftPlanMany 2026-05-19 17:29:28 -04:00
Peter Boyle ddbb7f07c8 FFT: pass nullptr for inembed/onembed in hipfftPlanMany to avoid HIPFFT_PARSE_ERROR 2026-05-19 17:15:21 -04:00
Peter BoyleandGitHub a5a04929fb Merge pull request #492 from giltirn/develop
Fixes to support CUDA > 13
2026-05-19 15:26:58 -04:00
Peter BoyleandClaude Sonnet 4.6 1e29c59bcc FFT: cache plans per vobj type across calls
Plans are created lazily on the first FFT_dim call and reused for all
subsequent calls on the same FFT object.  PlanCreate<vobj>() can be
called explicitly to pre-warm the cache.  PlanDestroy() must be called
before switching to a different vobj type; the destructor cleans up any
live plans automatically.

Update Test_fft.cc and Test_fftf.cc to call PlanDestroy() between the
LatticeComplex and LatticeSpinMatrix sections that reuse the same FFT object.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-05-19 15:12:10 -04:00
Peter BoyleandClaude Sonnet 4.6 b6abdc3845 Accelerator: lower default accelerator_threads from 16 to 8
Benchmark_dwf_fp32 on MI250X GCD: 1.7 TF/s at nt=8, ~300 GF/s at nt=16.
With Nsimd=8 (fp32, GEN_SIMD_WIDTH=64B), nt=8 gives exactly 64 threads =
one full AMD wavefront. Higher values double register demand per block and
hit a register-pressure cliff for stencil kernels.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-05-19 13:41:03 -04:00
Christopher Kelly 77b8657fcc Fixes to support CUDA > 13. Specifically, the CUDA header is no longer accidentally included within Grid's namespace, and the breaking change to cub::Sum() -> ::cuda::std::plus<>{} in CUDA-13 has been worked around 2026-05-19 12:22:14 -04:00
Peter Boyle 2fadd8bb62 Accelerator: raise default accelerator_threads from 2 to 16 2026-05-19 10:15:53 -04:00
Peter BoyleandClaude Sonnet 4.6 60df2dd5d0 skills: add gpu-memory-performance.md
Documents the acceleratorThreads() default=2 trap, LambdaApply thread
mapping, coalescedRead/Write idiom, when to use __global__ vs
accelerator_for, and fused vs staged HBM access patterns.

Includes observed MI250X numbers from LatticePropagatorD reduction
(50 → 297 → 546 GB/s progression).

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-05-19 10:03:32 -04:00
Peter BoyleandClaude Sonnet 4.6 66b529b345 sumD_gpu_reduce_words: fuse pack+reduce into single packReduceKernel
Replace the two-kernel pack+reduce sequence with a single fused kernel
packReduceKernel<R> that reads R words of each vobj at offset 'base'
and accumulates directly into iVector<iScalar<scalarD>,R>, eliminating
the intermediate bundle buffer entirely.

HBM access per word-group drops from 3x (pack-read + pack-write +
reduce-read) to 1x.  Thread count comes from getNumBlocksAndThreads
(warpSize..256) rather than acceleratorThreads(), so occupancy is
correct regardless of the --accelerator-threads setting.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-05-19 09:46:43 -04:00
Peter Boyle 1304172a93 Modified repack 2026-05-19 08:53:13 -04:00
Peter BoyleandClaude Sonnet 4.6 1315d4604d Enable GRID_REDUCTION_TIMING unconditionally
Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-05-18 22:14:00 -04:00
Peter BoyleandClaude Sonnet 4.6 a31af31328 Lattice_reduction_gpu: add GRID_REDUCTION_TIMING instrumentation
Uncomment #define GRID_REDUCTION_TIMING to enable per-phase timing output:

  sumD_gpu_reduce_words: pack time (accelerator_for) per R and base
  sumD_gpu_small:        reduceKernel+barrier time and D2H time separately
  sumD_gpu_large:        total wall time across all word groups

This lets us identify whether the large-type bottleneck is in the pack
kernel, the shared-memory reduction kernel, the barrier, or the D2H.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-05-18 22:13:30 -04:00
Peter BoyleandClaude Sonnet 4.6 26c3c7d8f9 sumD_gpu_large: radix-12 word-bundle reduction replacing radix-1
Replace the word-by-word loop (one kernel launch per scalar word) with
sumD_gpu_reduce_words<R> which packs R consecutive vector_type words per
site into iVector<iScalar<vector>,R>, then calls the existing sumD_gpu_small
shared-memory kernel once for the whole bundle.

Dispatch: radix-12 first, radix-4 for the remainder < 12, radix-1 for
any final < 4 words.  For LatticePropagator (144 words = 12x12), this
reduces the kernel-launch count from 144 to 12 -- a 12x reduction.

Bundle::Nsimd() inherits from vector_type so sumD_gpu_small handles SIMD
lane extraction and double-precision promotion identically to the scalar
word case.  sizeof(Bundle::scalar_objectD) = R*16 <= 192 B; well within
sharedMemPerBlock on all supported devices.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-05-18 21:56:45 -04:00
Peter BoyleandClaude Sonnet 4.6 0650d7c7eb Lattice_reduction_sycl: fix double-precision accumulation in sumD_gpu_tensor
Accumulate in sobjD throughout rather than accumulating in sobj and
converting the final sum. For float fields this matters: summing N floats
then casting loses O(N*eps_float) relative precision vs accumulating in
double from the start.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-05-18 21:53:40 -04:00
Peter BoyleandClaude Sonnet 4.6 068f95ad2d Revert to hand-rolled reduction; drop Lattice_reduction_gpu_cub.h
Remove the CUB/hipCUB direction entirely. Restore Lattice_reduction_gpu.h,
Lattice_reduction_sycl.h, and Lattice_reduction.h to the state before the
CUB rewrite (commit 969b0a39), recovering the original primary function names
(sumD_gpu_small, sumD_gpu_large, sumD_gpu, sum_gpu, sum_gpu_large) and the
hand-rolled shared-memory reduction kernel.

Delete Lattice_reduction_gpu_cub.h. Update Test_reduction to remove the
old/new comparison sections that depended on sum_gpu_old.

The lesson: CUB DeviceReduce is slower than the hand-rolled kernel for small
types, and the smem sizing problem for the extraction pass has no clean
solution within the accelerator_for abstraction. The right improvement is
a higher radix (12 then 4) in sumD_gpu_large, applied directly to the
existing hand-rolled kernel.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-05-18 21:52:18 -04:00
Peter BoyleandClaude Sonnet 4.6 f4fbf7c9ca sumD_gpu_direct: revert to per-lane write; CUB handles Nsimd*osites inputs
Benchmarking showed the shared-memory lane-summation approach (843d6497)
was slower than writing each SIMD lane individually and letting CUB reduce
the full nlanes = osites*Nsimd array. CUB's device reduce is more efficient
over the larger input than the smem overhead + serialised lane-0 summation.
The smem approach also required overriding acceleratorThreads() to avoid
the block-size sizing problem. Restore the simpler per-lane path.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-05-18 21:23:15 -04:00
Peter BoyleandClaude Sonnet 4.6 843d6497b2 sumD_gpu_direct: shared-memory lane reduction with acceleratorThreads(1)
Set acceleratorThreads to 1 before the extraction kernel so that
dim3(nsimd,1,1) blocks give exactly one site group per block and
__shared__ sobjD smem[nsimd] is correctly sized without depending on
the runtime acceleratorThreads() value. threadIdx.x (acceleratorSIMTlane)
indexes the SIMD lane for coalesced reads; lane 0 sums smem[0..nsimd-1]
and writes one sobjD per site. CUB then reduces osites elements instead
of osites*nsimd, reducing both store traffic and CUB work by Nsimd.
acceleratorSynchronise() (warp-level) suffices since nsimd < warpSize.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-05-18 21:08:10 -04:00
Peter BoyleandClaude Sonnet 4.6 747c167658 sumD_gpu_direct: one thread per SIMD lane using extractLane
Replaces one thread per outer site calling Reduce() (sequential Nsimd-wide
loop) with one thread per lane calling extractLane() — O(1) per thread.
CUB now reduces over osites*Nsimd elements. Avoids serial lane reduction
but leaves the per-lane sobjD store stride as a known remaining concern.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-05-18 16:21:50 -04:00
Peter BoyleandClaude Sonnet 4.6 fca2c5dba0 Lattice_reduction_gpu_cub: define GRID_REDUCTION_TIMING in header
Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-05-18 14:54:08 -04:00
Peter BoyleandClaude Sonnet 4.6 e12bc7f07c Lattice_reduction_gpu_cub: add GRID_REDUCTION_TIMING instrumentation
Guards accelerator_for and CUB DeviceReduce calls in sumD_gpu_direct
and sumD_gpu_large with #ifdef GRID_REDUCTION_TIMING to isolate where
time is spent in each path. Large path accumulates across all groups
and prints totals with words/nfull/rem context.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-05-18 14:23:44 -04:00
Peter BoyleandClaude Sonnet 4.6 dc6ae51cab Lattice_reduction_gpu_cub: replace WordBundle4 with iVector<iScalar<scalarD>,4>
WordBundle4 was redundant with Grid's existing tensor infrastructure.
iVector<iScalar<scalarD>,4> already provides accelerator_inline operator+,
zeroit(), and sycl::is_device_copyable — no new type needed.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-05-18 13:55:28 -04:00
Peter BoyleandClaude Sonnet 4.6 baa70d8ec9 Test_reduction: add timing benchmark for new vs old reduction paths
Reports us/call and GB/s for sum_gpu (CUB/sycl::reduction) and
sum_gpu_old (hand-rolled shared-memory) for each field type, with
5-call warmup and 100-call timed loop.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-05-18 12:31:13 -04:00
Peter BoyleandClaude Sonnet 4.6 c93b338bdd skills: HPC battle-hardening skill files for GPU+MPI correctness
Six skill files encoding expertise for making codebases robust on
problematic HPC systems, covering: correctness verification
(double-run, fingerprinting, flight recorder), hang diagnosis,
GPU runtime correctness (premature barrier, infinite poll),
MPI correctness on heterogeneous systems (device buffer aliasing,
AARCH64 PLT corruption, deterministic reductions),
compiler validation, and communication/computation overlap pipeline
design.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-05-18 12:10:44 -04:00
Peter BoyleandClaude Sonnet 4.6 c0472aa0ec Test_reduction: use separate float and double grids
Float fields require a grid constructed with vComplexF::Nsimd(); using
a double grid causes grid->_gsites to undercount the sites in float
vobjF, making the constant-field expected value wrong.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-05-18 12:09:35 -04:00
Peter BoyleandClaude Sonnet 4.6 09552cfd73 Rename scalarNorm2 to squaredSum in Test_reduction.cc
The function computes |sum|^2 — the squared magnitude of an aggregate sum —
not a norm. squaredSum makes clear that squaring is applied to the sum, not
to individual site values before summing, distinguishing it from sumOfSquares
(the squared L2 norm).

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-05-15 23:15:11 -04:00
Peter BoyleandClaude Sonnet 4.6 003fec509c Fix Zero() used on thrust::complex in WordBundle4 initialisation
Grid's Zero() sentinel is not assignable to thrust::complex<double>;
use scalarD(0) instead.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-05-15 18:10:17 -04:00
Peter BoyleandClaude Sonnet 4.6 773a82d87f Reinstate large/small dispatch in CUB reduction path; radix-4 word-bundle for large types
rocPRIM's DeviceReduce requires warpSize(64) threads each holding one element in shared
memory, so sizeof(T)*64 must fit in sharedMemPerBlock.  LatticePropagator::scalar_objectD
is 2304 bytes (64*2304 = 147 KB), exceeding the budget and triggering a compile-time
static_assert in limit_block_size.

Introduce sumD_gpu_direct (the original direct-CUB path, safe for small types) and a new
sumD_gpu_large that groups the vobj's vector_type words in bundles of 4, reducing each
bundle as WordBundle4<scalarD> (64 bytes, 64*64 = 4 KB — always within budget).  If
words % 4 != 0, the final partial bundle is zero-padded.  sumD_gpu dispatches at compile
time via if constexpr on sizeof(sobjD) > 512.

For LatticePropagator (144 words) this gives 36 CUB launches instead of 144.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-05-15 16:55:58 -04:00
Peter BoyleandClaude Sonnet 4.6 286c29d6fb Add Test_reduction to tests/debug
Tests the new CUB/hipCUB/SYCL lattice reduction (sum_gpu) against the
preserved hand-rolled implementation (sum_gpu_old) for LatticeComplexF/D,
LatticeColourMatrixF/D and LatticePropagatorF/D.

Part a) gaussian random field: checks that old and new agree to within
float/double roundoff tolerance.
Part b) constant field (= 1.0, identity-matrix init): verifies
innerProduct(sum, sum) = Ncomp * V^2 where Ncomp counts the nonzero
diagonal scalar components per site (1 / Nc / Ns*Nc respectively).

Make.inc is auto-generated by scripts/filelist on bootstrap and is not
tracked; the new .cc file is all that is needed.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-05-15 14:31:33 -04:00
Peter BoyleandClaude Sonnet 4.6 969b0a3922 Rewrite lattice GPU reduction to use CUB, hipCUB, and SYCL reduction
Replace hand-rolled shared-memory reduction kernels (reduceBlock/reduceBlocks/
reduceKernel) and the global device variable retirementCount with a unified
CUB/hipCUB DeviceReduce::Reduce path for CUDA/HIP and sycl::reduction for SYCL.
No small/large split is needed: both CUB and sycl::reduction handle arbitrary
object sizes internally.

Old implementations preserved as sum_gpu_old / sumD_gpu_old etc. in the
original files for regression testing on GPU hardware.

Also add CLAUDE.md with build, test, and architecture guidance.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-05-15 13:41:56 -04:00
Peter Boyle f8b2eacf99 File list issue (Ed Bennets pull request?) 2026-05-15 12:57:42 -04:00
Peter Boyle 6140ac6864 Hip Happy 2026-05-15 12:13:01 -04:00
Peter Boyle c6c2834e03 Hip Happy 2026-05-15 11:30:29 -04:00
Peter Boyle 856545a1db Support ROCM 7.0.2 2026-05-15 11:30:29 -04:00
Peter BoyleandGitHub e2d607f6c7 Merge pull request #490 from jdmaia/hip-guard-acceleratorfor2dNB
[HIP] Including kernel launch parameter guard on accelerator_for2dNB
2026-05-06 14:51:30 -04:00
Julio Maia 66da4e0657 Including guard on accelerator_for2dNB against invalid kernel configurations if GRID_HIP 2026-05-06 13:26:33 -05:00
Peter Boyle b37390bb5a 4 node usqcd run 2026-04-27 14:40:11 -07:00
Peter Boyle 829dc8cceb 32 node 2026-04-27 14:38:02 -07:00
Peter Boyle 13cc2c39f5 FOM run 2026-04-27 14:20:49 -07:00
Peter Boyle 66ea3b271c Merge branch 'develop' of https://github.com/paboyle/Grid into develop 2026-04-27 13:55:52 -07:00
Peter Boyle d293b58a20 384 node baseline run 2026-04-27 13:54:40 -07:00
Peter Boyle ce093b2bf3 rdtsc 2026-04-27 13:54:06 -07:00
Peter Boyle e4404efe5a Perlmutter compile update 2026-04-27 13:53:28 -07:00
Peter Boyle 5ce270f1de Adding Claude related files 2026-04-21 10:41:18 -04:00
Peter Boyle af43b067a0 New CLAUDE controllable visualiser 2026-04-10 11:23:25 -04:00
Quadro 34b44d1fee New file for animation in MD time direction 2026-04-02 13:55:38 -04:00
Peter Boyle 595ceaac37 Include grid header and make the ENABLE correct 2026-03-11 17:24:44 -04:00
Peter Boyle daf5834e8e Fixing incorrect PR about disable fermion instantiations 2026-03-11 17:05:46 -04:00
Peter Boyle 0d8658a039 Optimised 2026-03-05 06:06:32 -05:00
Peter Boyle 095e004d01 Setup change GCR 2026-03-05 06:06:32 -05:00
Peter Boyle 0acabee7f6 Modest change 2026-03-05 06:06:32 -05:00
Peter Boyle 76fbcffb60 Improvement to 16^3 hdcg 2026-03-05 06:06:32 -05:00
Peter BoyleandGitHub a0a62d7ead Merge pull request #478 from vataspro/PolyakovUpstream
Spatial Polyakov Loop implementation
2026-02-24 20:45:42 -05:00
Peter BoyleandGitHub c5038ea6a5 Merge pull request #483 from cmcknigh/bugfix/rocm7-rocblas-type-refactor
Adding a version check to handle rocBlas type refactor
2026-02-24 20:45:03 -05:00
Peter BoyleandGitHub a5120903eb Merge pull request #486 from RChrHill/fix/sp4-fp32
Define Sp4 ProjectOnGeneralGroup for generic vtype
2026-02-24 20:44:08 -05:00
Peter BoyleandGitHub 00b286a08a Merge pull request #488 from RChrHill/feature/additional-ET-traces
Add ET support for Lattice spin- and colour-traces
2026-02-24 20:43:45 -05:00
Peter BoyleandGitHub 24a9759353 Merge pull request #485 from edbennett/skip-fermion-instantiations
Be able to skip compiling fermion instantiations altogether
2026-02-24 20:43:20 -05:00
edbennett 1b56f6f46d be able to skip compiling fermion instantiations altogether 2026-02-24 23:52:18 +00:00
Peter Boyle 2a8084d569 Subspace setup 2026-02-13 17:26:11 -05:00
Peter Boyle 6ff29f9d4f Alternate multigrids 2026-02-13 17:25:45 -05:00
RChHill c4d3e79193 Add ET support for Lattice spin- and colour-traces 2026-01-29 14:46:52 +00:00
Peter Boyle 7cd3f21e6b preserving a bunch of experiments on setup and g5 subspace doubling 2026-01-06 05:57:39 -05:00
RChHill b650b89682 Define Sp4 ProjectOnGeneralGroup for generic vtype 2025-11-19 13:26:52 +00:00
Allen McKnightandGitHub 4304245c1b Merge branch 'develop' into bugfix/rocm7-rocblas-type-refactor 2025-11-04 08:50:11 -06:00
Your Name 1d1fd3bcaf adding a version check to handle rocblas type change 2025-10-02 15:24:24 -05:00
Alexis Provatas c646d91527 Fix names, protect against bad index values, clean docstrings 2025-05-01 10:52:00 +01:00
Alexis Provatas a2b98d82e1 remove obsolete spatial polyakov observable file 2025-05-01 10:52:00 +01:00
Alexis Provatas 7b9415c088 Move observable logger to Polyakov Loop file and fix docstring 2025-05-01 10:52:00 +01:00
Alexis Provatas cb7110f492 Add Spatial Polyakov Loop observable 2025-05-01 10:52:00 +01:00
Alexis Provatas 0c7af66490 Create Spatial Polyakov Observable Module 2025-05-01 10:52:00 +01:00
Alexis Provatas 496d1b914a Generalise Polyakov loop and overload for temporal direction 2025-05-01 10:52:00 +01:00
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# CLAUDE.md
This file provides guidance to Claude Code (claude.ai/code) when working with code in this repository.
## What This Is
Grid is a data-parallel C++ library for lattice QCD. It provides SIMD-vectorised lattice containers, MPI-based domain decomposition, GPU acceleration (CUDA/HIP/SYCL), and a full suite of QCD algorithms including HMC.
## Build
Uses GNU Autotools. The bootstrap step only needs to run once (or after `configure.ac` changes).
```bash
./bootstrap.sh # downloads Eigen 3.4.0, generates configure
mkdir build && cd build
../configure [options]
make -j$(nproc)
make check # run root-level tests
make install
```
Key configure options:
| Option | Common values |
|--------|---------------|
| `--enable-simd=` | `AVX2`, `AVX512`, `KNL`, `A64FX`, `NEONv8`, `GPU` |
| `--enable-comms=` | `mpi-auto`, `mpi3-auto`, `none` |
| `--enable-accelerator=` | `cuda`, `hip`, `sycl` |
| `--enable-shm=` | `shmopen`, `hugetlbfs`, `nvlink` |
| `--enable-Nc=` | `3` (default), `2`, `4`, `5` |
| `--with-gmp=`, `--with-mpfr=`, `--with-fftw=`, `--with-lime=` | paths to libs |
| `--enable-hdf5`, `--enable-mkl`, `--enable-lapack` | optional features |
Platform recipes from `README.md`:
- **KNL**: `--enable-simd=KNL --enable-comms=mpi3-auto --enable-mkl`
- **Skylake/Haswell**: `--enable-simd=AVX512` or `AVX2` + `--enable-comms=mpi3-auto`
- **AMD EPYC**: `--enable-simd=AVX2 --enable-comms=mpi3`
- **A64FX (Fugaku)**: `--enable-simd=A64FX --enable-comms=mpi3 --enable-shm=shmget` (see `SVE_README.txt`)
Required external libs: GMP, MPFR, OpenSSL, zlib.
### Use `systems/` for real machines
`systems/<machine>/` holds the known-good build for each production platform (`Frontier`, `Aurora`, `Perlmutter`, `Summit`, `Tursa`, `Lumi`, `Booster`, `Crusher`, `SDCC-*`, `mac-arm`, …). Each contains a `config-command` (the exact `../../configure` invocation) and a `sourceme.sh` (module loads and env). **Prefer copying/adapting these over hand-rolling configure flags** — they encode compiler workarounds, `LDFLAGS`, and shared-memory settings that are easy to get wrong. `systems/WorkArounds.txt` records known vendor bugs.
Note the GPU builds use `--enable-simd=GPU --enable-gen-simd-width=64`, so `Nsimd` is *not* 1 on device (it is `64/sizeof(scalar)`).
### Regenerating `Make.inc` — required after adding or deleting source files
`Make.inc` files are generated, not tracked in git (`.gitignore`d). `scripts/filelist` walks `Grid/`, `tests/*`, `benchmarks/`, `examples/`, and `HMC/` and writes the file lists and per-test `bin_PROGRAMS` rules. Every new `.cc`/`.h` in `Grid/`, and every new `Test_*.cc` / `Benchmark_*.cc` / `Example_*.cc`, is invisible to the build until you run:
```bash
./scripts/filelist # from the source root, then re-run configure/make
```
`bootstrap.sh` runs it for you on the first setup.
## Running Tests and Benchmarks
```bash
# From build directory
make check # runs only Test_simd, Test_cshift, Test_stencil, Test_dwf_mixedcg_prec
make -C tests/<subdir> tests # build (not run) the tests in a subdirectory
make bench # build benchmarks
./tests/core/Test_simd # run a single test binary directly
mpirun -n 4 ./tests/core/Test_cshift --grid 16.16.16.16 --mpi 1.1.1.4
```
`make check` is a thin smoke test — building a subdirectory with `make -C tests/<subdir> tests` and running the relevant binaries directly is the normal development loop. Test binaries take Grid's standard command-line arguments (`--grid`, `--mpi`, `--accelerator-threads`, `--threads`, `--debug-signals`, `--log`); see `Grid/util/Init.cc`.
Test subdirectories and their focus: `core` (SIMD, stencil, comms), `solver` (CG, GMRES, eigensolvers), `hmc` (MD integrators), `forces` (fermion forces), `lanczos`, `IO`, `smearing`, `sp2n`, `debug`.
Tests and benchmarks that need optional fermion representations are guarded by `disable_tests_without_instantiations.h` / `disable_benchmarks_without_instantiations.h`, so a `--disable-fermion-reps --disable-gparity` build silently compiles them to no-ops.
## Architecture
### Layer stack (bottom to top)
1. **SIMD layer** (`Grid/simd/`) — platform-specific intrinsics wrapped into `vRealF`, `vComplexD`, etc. The SIMD width and layout are compile-time constants controlled by `--enable-simd`.
2. **Tensor layer** (`Grid/tensors/`) — Lorentz/colour/spin tensor algebra built on top of SIMD types. `iMatrix`, `iVector`, `iScalar` templates compose into QCD types like `ColourMatrix`, `SpinColourVector`.
3. **Lattice layer** (`Grid/lattice/`) — `Lattice<T>` container: a site-local tensor replicated across a distributed Cartesian grid. All arithmetic is site-parallel and expression-template-fused.
4. **Cartesian/comms layer** (`Grid/cartesian/`, `Grid/communicator/`) — `GridCartesian` holds the MPI topology and local/global geometry. `Grid/cshift/` implements nearest-neighbour halo exchange; `Grid/stencil/` is the optimised multi-hop stencil used by Dirac operators.
5. **Algorithm layer** (`Grid/algorithms/`) — iterative solvers (CG, GMRES, BiCGSTAB, mixed-precision), eigensolvers (Lanczos, LAPACK), FFT, smearing.
6. **QCD layer** (`Grid/qcd/`) — gauge and fermion actions, HMC integrators, observables.
### QCD subsystem (`Grid/qcd/`)
- `action/fermion/` — Wilson, Clover, DWF (Mobius), Staggered, twisted-mass, G-parity variants
- `action/gauge/` — Wilson gauge, Symanzik, Iwasaki, DBW2, plaquette+rect
- `representations/` — Fundamental, Adjoint, Two-index, Sp(2n)
- `hmc/` — Leapfrog, OMF2/OMF4 integrators; pseudofermion refreshment; Metropolis accept/reject
- `smearing/` — APE, Stout, HEX, gradient flow
- `observables/` — Polyakov loop, plaquette, topological charge
### GPU acceleration and the view/memory-manager discipline
GPU support is injected via macros in `Grid/threads/Accelerator.h``accelerator_for(i, n, nsimd, {...})`, `accelerator_forNB` (non-blocking, must be followed by `accelerator_barrier()`), `accelerator_for2dNB`, and `accelerator_inline`. On a CPU build these degrade to `thread_for` (OpenMP). Unified virtual memory is on by default (`--enable-unified=yes`); device-aware MPI (`--enable-accelerator-aware-mpi`) avoids device→host copies on transfers.
Lattice data is **not** directly addressable inside a kernel. You must open a view with the correct access mode so `Grid/allocator/MemoryManager.h` can move/mark the data:
```cpp
autoView(out_v, out, AcceleratorWriteDiscard); // RAII; closes at end of scope
autoView(in_v, in, AcceleratorRead);
accelerator_for(ss, grid->oSites(), Nsimd, {
coalescedWrite(out_v[ss], coalescedRead(in_v[ss]));
});
```
Modes are `AcceleratorRead/Write/WriteDiscard` and `CpuRead/Write/WriteDiscard`. Getting the mode wrong (e.g. `AcceleratorRead` on a field you write) produces stale-data bugs that only appear on GPU builds. Inside kernels use `coalescedRead`/`coalescedWrite` rather than raw `operator[]` — they map the SIMD lane onto `threadIdx.x` so accesses stay coalesced.
### Repo-local debugging skills (`skills/`)
`skills/` contains hard-won, Grid-specific playbooks written as invocable skill files. Consult them before debugging in these areas rather than reasoning from first principles:
| File | Covers |
|---|---|
| `gpu-memory-performance.md` | `acceleratorThreads()`, LambdaApply thread mapping, `coalescedRead` idiom, fused vs staged HBM access |
| `gpu-runtime-correctness.md` | GPU runtime returning early from sync, silent wrong answers |
| `communication-overlap.md` | 7-phase halo pipeline, per-packet events, host-staging vs GPU-direct RDMA |
| `mpi-heterogeneous.md` | `MPI_Sendrecv` device-buffer aliasing, deterministic reductions |
| `compiler-validation.md` | Isolating GPU compiler codegen bugs, minimal reproducers |
| `correctness-verification.md` | Double-run fingerprinting, per-packet checksums, flight recorder |
| `hang-diagnosis.md` | Diagnosing MPI/accelerator hangs |
### Memory and I/O
- `Grid/allocator/` — aligned/NUMA-aware allocators; caching allocator via `--enable-alloc-cache`
- `Grid/parallelIO/` — distributed parallel reader/writer for ILDG (via LIME), SciDAC, and native binary formats
- `Grid/serialisation/` — text, binary, HDF5, XML/JSON serialisation of arbitrary Grid objects
### Executables
- `HMC/` — production HMC driver programmes (e.g. `Mobius2p1f.cc`, `DWF_plus_DSDR_nf2plus1_Shamir_Gparity.cc`)
- `benchmarks/``Benchmark_dwf`, `Benchmark_ITT`, `Benchmark_comms`, `Benchmark_memory_bandwidth`, … used to qualify a new machine
- `examples/` — small, readable programmes (`Example_plaquette.cc`, `Example_Mobius_spectrum.cc`) that are the best starting point for learning the API
Each of these directories auto-builds every top-level `.cc` as its own binary via `scripts/filelist`.
Every programme is wrapped in `Grid_init(&argc, &argv)` / `Grid_finalize()` (`Grid/util/Init.h`).
## Key Conventions
- **C++17** is required throughout.
- Template structure: most classes are templated on `<_FImpl>` (fermion impl) or `<Gimpl>` (gauge impl), which encode the representation and precision. Instantiation is controlled by `--enable-fermion-instantiations`; the explicit instantiation `.cc` files live under `Grid/qcd/action/fermion/instantiation/<Impl>/` and are selected by `scripts/filelist`.
- The `RealD`/`RealF`/`ComplexD`/`ComplexF` typedefs are used everywhere; avoid raw `double`/`float`.
- Use `GRID_ASSERT(cond)` (defined in `Grid/GridStd.h`), not bare `assert` — it prints a Grid-formatted message and aborts cleanly under MPI.
- Logging is stream-based, not macro-based: `std::cout << GridLogMessage << ... << std::endl;`. Channels declared in `Grid/log/Log.h` include `GridLogError`, `GridLogWarning`, `GridLogDebug`, `GridLogPerformance`, `GridLogIterative`, `GridLogSolver`, `GridLogHMC`, `GridLogComms`, `GridLogMemory`, `GridLogDslash`, `GridLogIRL`, `GridLogMG`. A subset is switched on at runtime with e.g. `--log Error,Warning,Message,Performance,Iterative,Integrator,Debug,Colours` (names given without the `GridLog` prefix).
- Performance-critical paths use `GRID_TRACE(name)` from `Grid/perfmon/Tracing.h` (compiled out unless `--enable-tracing` selects a backend) and the `GridStopWatch` timers in `Grid/perfmon/Timer.h`.
- Reductions across MPI ranks go through `GridBase::GlobalSum` / `GlobalMax`; never reduce with bare MPI calls inside library code.
- Everything lives in `NAMESPACE_BEGIN(Grid)` / `NAMESPACE_END(Grid)` macros; follow the surrounding file rather than writing `namespace Grid { }`.
- British spelling is used in identifiers and comments (`colour`, `neighbour`, `serialisation`).
+9 -7
View File
@@ -54,22 +54,24 @@ Version.h: version-cache
include Make.inc
include Eigen.inc
extra_sources+=$(WILS_FERMION_FILES)
extra_sources+=$(STAG_FERMION_FILES)
if BUILD_FERMION_INSTANTIATIONS
extra_sources+=$(WILS_FERMION_FILES)
extra_sources+=$(STAG_FERMION_FILES)
if BUILD_ZMOBIUS
extra_sources+=$(ZWILS_FERMION_FILES)
extra_sources+=$(ZWILS_FERMION_FILES)
endif
if BUILD_GPARITY
extra_sources+=$(GP_FERMION_FILES)
extra_sources+=$(GP_FERMION_FILES)
endif
if BUILD_FERMION_REPS
extra_sources+=$(ADJ_FERMION_FILES)
extra_sources+=$(TWOIND_FERMION_FILES)
extra_sources+=$(ADJ_FERMION_FILES)
extra_sources+=$(TWOIND_FERMION_FILES)
endif
if BUILD_SP
extra_sources+=$(SP_FERMION_FILES)
if BUILD_FERMION_REPS
extra_sources+=$(SP_TWOIND_FERMION_FILES)
extra_sources+=$(SP_TWOIND_FERMION_FILES)
endif
endif
endif
+305 -308
View File
@@ -1,6 +1,6 @@
/*************************************************************************************
Grid physics library, www.github.com/paboyle/Grid
Grid physics library, www.github.com/paboyle/Grid
Source file: ./lib/Cshift.h
@@ -65,17 +65,16 @@ public:
typedef hipfftDoubleComplex FFTW_scalar;
typedef hipfftHandle FFTW_plan;
static FFTW_plan fftw_plan_many_dft(int rank, int *n,int howmany,
FFTW_scalar *in, int *inembed,
int istride, int idist,
FFTW_scalar *out, int *onembed,
int ostride, int odist,
FFTW_scalar *in, int *inembed,
int istride, int idist,
FFTW_scalar *out, int *onembed,
int ostride, int odist,
int sign, unsigned flags) {
FFTW_plan p;
auto rv = hipfftPlanMany(&p,rank,n,n,istride,idist,n,ostride,odist,HIPFFT_Z2Z,howmany);
GRID_ASSERT(rv==HIPFFT_SUCCESS);
return p;
}
}
inline static void fftw_execute_dft(const FFTW_plan p,FFTW_scalar *in,FFTW_scalar *out, int sign) {
hipfftResult rv;
if ( sign == forward ) rv =hipfftExecZ2Z(p,in,out,HIPFFT_FORWARD);
@@ -83,29 +82,25 @@ public:
accelerator_barrier();
GRID_ASSERT(rv==HIPFFT_SUCCESS);
}
inline static void fftw_destroy_plan(const FFTW_plan p) {
hipfftDestroy(p);
}
inline static void fftw_destroy_plan(const FFTW_plan p) { hipfftDestroy(p); }
};
template<> struct FFTW<ComplexF> {
public:
static const int forward=FFTW_FORWARD;
static const int backward=FFTW_BACKWARD;
typedef hipfftComplex FFTW_scalar;
typedef hipfftHandle FFTW_plan;
typedef hipfftComplex FFTW_scalar;
typedef hipfftHandle FFTW_plan;
static FFTW_plan fftw_plan_many_dft(int rank, int *n,int howmany,
FFTW_scalar *in, int *inembed,
int istride, int idist,
FFTW_scalar *out, int *onembed,
int ostride, int odist,
FFTW_scalar *in, int *inembed,
int istride, int idist,
FFTW_scalar *out, int *onembed,
int ostride, int odist,
int sign, unsigned flags) {
FFTW_plan p;
auto rv = hipfftPlanMany(&p,rank,n,n,istride,idist,n,ostride,odist,HIPFFT_C2C,howmany);
GRID_ASSERT(rv==HIPFFT_SUCCESS);
return p;
}
}
inline static void fftw_execute_dft(const FFTW_plan p,FFTW_scalar *in,FFTW_scalar *out, int sign) {
hipfftResult rv;
if ( sign == forward ) rv =hipfftExecC2C(p,in,out,HIPFFT_FORWARD);
@@ -113,9 +108,7 @@ public:
accelerator_barrier();
GRID_ASSERT(rv==HIPFFT_SUCCESS);
}
inline static void fftw_destroy_plan(const FFTW_plan p) {
hipfftDestroy(p);
}
inline static void fftw_destroy_plan(const FFTW_plan p) { hipfftDestroy(p); }
};
#endif
@@ -126,53 +119,45 @@ public:
static const int backward=FFTW_BACKWARD;
typedef cufftDoubleComplex FFTW_scalar;
typedef cufftHandle FFTW_plan;
static FFTW_plan fftw_plan_many_dft(int rank, int *n,int howmany,
FFTW_scalar *in, int *inembed,
int istride, int idist,
FFTW_scalar *out, int *onembed,
int ostride, int odist,
FFTW_scalar *in, int *inembed,
int istride, int idist,
FFTW_scalar *out, int *onembed,
int ostride, int odist,
int sign, unsigned flags) {
FFTW_plan p;
cufftPlanMany(&p,rank,n,n,istride,idist,n,ostride,odist,CUFFT_Z2Z,howmany);
return p;
}
}
inline static void fftw_execute_dft(const FFTW_plan p,FFTW_scalar *in,FFTW_scalar *out, int sign) {
if ( sign == forward ) cufftExecZ2Z(p,in,out,CUFFT_FORWARD);
else cufftExecZ2Z(p,in,out,CUFFT_INVERSE);
accelerator_barrier();
}
inline static void fftw_destroy_plan(const FFTW_plan p) {
cufftDestroy(p);
}
inline static void fftw_destroy_plan(const FFTW_plan p) { cufftDestroy(p); }
};
template<> struct FFTW<ComplexF> {
public:
static const int forward=FFTW_FORWARD;
static const int backward=FFTW_BACKWARD;
typedef cufftComplex FFTW_scalar;
typedef cufftHandle FFTW_plan;
typedef cufftHandle FFTW_plan;
static FFTW_plan fftw_plan_many_dft(int rank, int *n,int howmany,
FFTW_scalar *in, int *inembed,
int istride, int idist,
FFTW_scalar *out, int *onembed,
int ostride, int odist,
FFTW_scalar *in, int *inembed,
int istride, int idist,
FFTW_scalar *out, int *onembed,
int ostride, int odist,
int sign, unsigned flags) {
FFTW_plan p;
cufftPlanMany(&p,rank,n,n,istride,idist,n,ostride,odist,CUFFT_C2C,howmany);
return p;
}
}
inline static void fftw_execute_dft(const FFTW_plan p,FFTW_scalar *in,FFTW_scalar *out, int sign) {
if ( sign == forward ) cufftExecC2C(p,in,out,CUFFT_FORWARD);
else cufftExecC2C(p,in,out,CUFFT_INVERSE);
accelerator_barrier();
}
inline static void fftw_destroy_plan(const FFTW_plan p) {
cufftDestroy(p);
}
inline static void fftw_destroy_plan(const FFTW_plan p) { cufftDestroy(p); }
};
#endif
@@ -183,313 +168,325 @@ public:
typedef fftw_complex FFTW_scalar;
typedef fftw_plan FFTW_plan;
static FFTW_plan fftw_plan_many_dft(int rank, int *n,int howmany,
FFTW_scalar *in, int *inembed,
int istride, int idist,
FFTW_scalar *out, int *onembed,
int ostride, int odist,
FFTW_scalar *in, int *inembed,
int istride, int idist,
FFTW_scalar *out, int *onembed,
int ostride, int odist,
int sign, unsigned flags) {
return ::fftw_plan_many_dft(rank,n,howmany,in,inembed,istride,idist,out,onembed,ostride,odist,sign,flags);
}
}
inline static void fftw_execute_dft(const FFTW_plan p,FFTW_scalar *in,FFTW_scalar *out, int sign) {
::fftw_execute_dft(p,in,out);
}
inline static void fftw_destroy_plan(const FFTW_plan p) {
::fftw_destroy_plan(p);
}
inline static void fftw_destroy_plan(const FFTW_plan p) { ::fftw_destroy_plan(p); }
};
template<> struct FFTW<ComplexF> {
public:
typedef fftwf_complex FFTW_scalar;
typedef fftwf_plan FFTW_plan;
static FFTW_plan fftw_plan_many_dft(int rank, int *n,int howmany,
FFTW_scalar *in, int *inembed,
int istride, int idist,
FFTW_scalar *out, int *onembed,
int ostride, int odist,
FFTW_scalar *in, int *inembed,
int istride, int idist,
FFTW_scalar *out, int *onembed,
int ostride, int odist,
int sign, unsigned flags) {
return ::fftwf_plan_many_dft(rank,n,howmany,in,inembed,istride,idist,out,onembed,ostride,odist,sign,flags);
}
}
inline static void fftw_execute_dft(const FFTW_plan p,FFTW_scalar *in,FFTW_scalar *out, int sign) {
::fftwf_execute_dft(p,in,out);
}
inline static void fftw_destroy_plan(const FFTW_plan p) {
::fftwf_destroy_plan(p);
}
inline static void fftw_destroy_plan(const FFTW_plan p) { ::fftwf_destroy_plan(p); }
};
#endif
#endif
class FFT {
private:
double flops;
double flops_call;
uint64_t usec;
public:
static const int forward=FFTW_FORWARD;
static const int backward=FFTW_BACKWARD;
double Flops(void) {return flops;}
double MFlops(void) {return flops/usec;}
double USec(void) {return (double)usec;}
struct FFTbase {
double flops;
double flops_call;
uint64_t usec;
GridCartesian *_grid;
FFT ( GridCartesian * grid )
{
flops=0;
usec =0;
};
~FFT ( void) {
// delete sgrid;
static const int forward = FFTW_FORWARD;
static const int backward = FFTW_BACKWARD;
double Flops(void) { return flops; }
double MFlops(void) { return flops / usec; }
double USec(void) { return (double)usec; }
FFTbase(GridCartesian *grid) : _grid(grid), flops(0), flops_call(0), usec(0) {}
};
// Barrel-shift gather, FFT execute, and insert. Called by both FFT and PlannedFFT.
// The caller is responsible for plan acquisition and destruction.
template<class vobj>
static void FFT_dim_execute(
Lattice<vobj> &result,
const Lattice<vobj> &source,
int dim, int sign,
typename FFTW<typename vobj::scalar_type>::FFTW_plan p,
GridCartesian *grid,
double &flops, double &flops_call, uint64_t &usec)
{
typedef typename vobj::scalar_type scalar;
typedef typename vobj::scalar_object sobj;
typedef typename vobj::scalar_type scalar_type;
typedef typename vobj::vector_type vector_type;
typedef typename FFTW<scalar>::FFTW_scalar FFTW_scalar;
const int Ndim = grid->Nd();
int L = grid->_ldimensions[dim];
int G = grid->_fdimensions[dim];
int Ncomp = sizeof(sobj) / sizeof(scalar);
int64_t Nlow = 1, Nhigh = 1;
for (int d = 0; d < dim; d++) Nlow *= grid->_ldimensions[d];
for (int d = dim+1; d < Ndim; d++) Nhigh *= grid->_ldimensions[d];
int64_t Nperp = Nlow * Nhigh;
deviceVector<scalar> pgbuf(Nperp * Ncomp * G);
scalar *pgbuf_v = &pgbuf[0];
int howmany = Ncomp * Nperp;
scalar div;
if (sign == FFTW_BACKWARD) div = 1.0 / G;
else if (sign == FFTW_FORWARD) div = 1.0;
else GRID_ASSERT(0);
double t_pencil = 0, t_fft = 0, t_copy = 0, t_shift = 0;
double t_total = -usecond();
result = source;
int pc = grid->_processor_coor[dim];
const Coordinate ldims = grid->_ldimensions;
const Coordinate rdims = grid->_rdimensions;
const Coordinate sdims = grid->_simd_layout;
const Coordinate processors = grid->_processors;
Coordinate pgdims(Ndim);
pgdims[0] = G;
for (int d = 0, dd = 1; d < Ndim; d++)
if (d != dim) pgdims[dd++] = ldims[d];
int64_t pgvol = 1;
for (int d = 0; d < Ndim; d++) pgvol *= pgdims[d];
const int Nsimd = vobj::Nsimd();
t_pencil = -usecond();
for (int p_idx = 0; p_idx < processors[dim]; p_idx++) {
t_copy -= usecond();
autoView(r_v, result, AcceleratorRead);
accelerator_for(idx, grid->oSites(), vobj::Nsimd(), {
#ifdef GRID_SIMT
{
int lane = acceleratorSIMTlane(Nsimd);
#else
for (int lane = 0; lane < Nsimd; lane++) {
#endif
Coordinate icoor, ocoor, pgcoor;
Lexicographic::CoorFromIndex(icoor, lane, sdims);
Lexicographic::CoorFromIndex(ocoor, idx, rdims);
pgcoor[0] = ocoor[dim] + icoor[dim]*rdims[dim] + ((pc+p_idx)%processors[dim])*L;
for (int d = 0, dd = 1; d < Ndim; d++)
if (d != dim) { pgcoor[dd] = ocoor[d] + icoor[d]*rdims[d]; dd++; }
int64_t pgidx;
Lexicographic::IndexFromCoor(pgcoor, pgidx, pgdims);
vector_type *from = (vector_type *)&r_v[idx];
scalar_type stmp;
for (int w = 0; w < Ncomp; w++) {
stmp = getlane(from[w], lane);
pgbuf_v[pgidx + w*pgvol] = stmp;
}
#ifdef GRID_SIMT
}
#else
}
#endif
});
t_copy += usecond();
if (p_idx != processors[dim] - 1) {
Lattice<vobj> temp(grid);
t_shift -= usecond();
temp = Cshift(result, dim, L); result = temp;
t_shift += usecond();
}
}
template<class vobj>
void FFT_dim_mask(Lattice<vobj> &result,const Lattice<vobj> &source,Coordinate mask,int sign){
t_pencil += usecond();
// vgrid=result.Grid();
// conformable(result.Grid(),vgrid);
// conformable(source.Grid(),vgrid);
const int Ndim = source.Grid()->Nd();
FFTW_scalar *in = (FFTW_scalar *)pgbuf_v;
FFTW_scalar *out = (FFTW_scalar *)pgbuf_v;
t_fft = -usecond();
FFTW<scalar>::fftw_execute_dft(p, in, out, sign);
t_fft += usecond();
flops_call = 5.0 * howmany * G * log2(G);
usec = t_fft;
flops = flops_call;
result = Zero();
double t_insert = -usecond();
{
autoView(r_v, result, AcceleratorWrite);
accelerator_for(idx, grid->oSites(), Nsimd, {
#ifdef GRID_SIMT
{
int lane = acceleratorSIMTlane(Nsimd);
#else
for (int lane = 0; lane < Nsimd; lane++) {
#endif
Coordinate icoor(Ndim), ocoor(Ndim), pgcoor(Ndim);
Lexicographic::CoorFromIndex(icoor, lane, sdims);
Lexicographic::CoorFromIndex(ocoor, idx, rdims);
pgcoor[0] = ocoor[dim] + icoor[dim]*rdims[dim] + pc*L;
for (int d = 0, dd = 1; d < Ndim; d++)
if (d != dim) { pgcoor[dd] = ocoor[d] + icoor[d]*rdims[d]; dd++; }
int64_t pgidx;
Lexicographic::IndexFromCoor(pgcoor, pgidx, pgdims);
vector_type *to = (vector_type *)&r_v[idx];
scalar_type stmp;
for (int w = 0; w < Ncomp; w++) {
stmp = pgbuf_v[pgidx + w*pgvol];
putlane(to[w], stmp, lane);
}
#ifdef GRID_SIMT
}
#else
}
#endif
});
}
result = result * div;
t_insert += usecond();
t_total += usecond();
std::cout << GridLogPerformance << " FFT took " << t_total/1.0e6 << " s" << std::endl;
std::cout << GridLogPerformance << " FFT pencil " << t_pencil/1.0e6 << " s" << std::endl;
std::cout << GridLogPerformance << " of which copy " << t_copy/1.0e6 << " s" << std::endl;
std::cout << GridLogPerformance << " of which shift" << t_shift/1.0e6 << " s" << std::endl;
std::cout << GridLogPerformance << " FFT kernels " << t_fft/1.0e6 << " s" << std::endl;
std::cout << GridLogPerformance << " FFT insert " << t_insert/1.0e6 << " s" << std::endl;
}
class FFT : public FFTbase {
public:
FFT(GridCartesian *grid) : FFTbase(grid) {}
~FFT() {}
template<class vobj>
void FFT_dim_mask(Lattice<vobj> &result, const Lattice<vobj> &source, Coordinate mask, int sign) {
const int Ndim = _grid->Nd();
Lattice<vobj> tmp = source;
for(int d=0;d<Ndim;d++){
if( mask[d] ) {
FFT_dim(result,tmp,d,sign);
tmp=result;
for (int d = 0; d < Ndim; d++) {
if (mask[d]) {
FFT_dim(result, tmp, d, sign);
tmp = result;
}
}
}
template<class vobj>
void FFT_all_dim(Lattice<vobj> &result,const Lattice<vobj> &source,int sign){
const int Ndim = source.Grid()->Nd();
Coordinate mask(Ndim,1);
FFT_dim_mask(result,source,mask,sign);
void FFT_all_dim(Lattice<vobj> &result, const Lattice<vobj> &source, int sign) {
Coordinate mask(_grid->Nd(), 1);
FFT_dim_mask(result, source, mask, sign);
}
template<class vobj>
void FFT_dim(Lattice<vobj> &result,const Lattice<vobj> &source,int dim, int sign){
const int Ndim = source.Grid()->Nd();
GridBase *grid = source.Grid();
conformable(result.Grid(),source.Grid());
void FFT_dim(Lattice<vobj> &result, const Lattice<vobj> &source, int dim, int sign) {
GRID_ASSERT(source.Grid() == _grid);
GRID_ASSERT(result.Grid() == _grid);
conformable(result.Grid(), source.Grid());
int L = grid->_ldimensions[dim];
int G = grid->_fdimensions[dim];
Coordinate layout(Ndim,1);
// Construct pencils
typedef typename vobj::scalar_object sobj;
typedef typename vobj::scalar_type scalar;
typedef typename vobj::scalar_type scalar_type;
typedef typename vobj::vector_type vector_type;
//std::cout << "CPU view" << std::endl;
typedef typename vobj::scalar_object sobj;
typedef typename FFTW<scalar>::FFTW_scalar FFTW_scalar;
typedef typename FFTW<scalar>::FFTW_plan FFTW_plan;
int Ncomp = sizeof(sobj)/sizeof(scalar);
int64_t Nlow = 1;
int64_t Nhigh = 1;
for(int d=0;d<dim;d++){
Nlow*=grid->_ldimensions[d];
}
for(int d=dim+1;d<Ndim;d++){
Nhigh*=grid->_ldimensions[d];
}
int64_t Nperp=Nlow*Nhigh;
deviceVector<scalar> pgbuf; // Layout is [perp][component][dim]
pgbuf.resize(Nperp*Ncomp*G);
scalar *pgbuf_v = &pgbuf[0];
int rank = 1; /* 1d transforms */
int n[] = {G}; /* 1d transforms of length G */
const int Ndim = _grid->Nd();
int G = _grid->_fdimensions[dim];
int Ncomp = sizeof(sobj) / sizeof(scalar);
int64_t Nperp = 1;
for (int d = 0; d < Ndim; d++)
if (d != dim) Nperp *= _grid->_ldimensions[d];
int n[] = {G};
int howmany = Ncomp * Nperp;
int odist,idist,istride,ostride;
idist = odist = G; /* Distance between consecutive FT's */
istride = ostride = 1; /* Distance between two elements in the same FT */
int *inembed = n, *onembed = n;
scalar div;
if ( sign == backward ) div = 1.0/G;
else if ( sign == forward ) div = 1.0;
else GRID_ASSERT(0);
double t_pencil=0;
double t_fft =0;
double t_total =-usecond();
// std::cout << GridLogPerformance<<"Making FFTW plan" << std::endl;
/*
*
*/
FFTW_plan p;
{
FFTW_scalar *in = (FFTW_scalar *)&pgbuf_v[0];
FFTW_scalar *out= (FFTW_scalar *)&pgbuf_v[0];
p = FFTW<scalar>::fftw_plan_many_dft(rank,n,howmany,
in,inembed,
istride,idist,
out,onembed,
ostride, odist,
sign,FFTW_ESTIMATE);
}
// Barrel shift and collect global pencil
// std::cout << GridLogPerformance<<"Making pencil" << std::endl;
Coordinate lcoor(Ndim), gcoor(Ndim);
double t_copy=0;
double t_shift=0;
t_pencil = -usecond();
result = source;
int pc = grid->_processor_coor[dim];
const Coordinate ldims = grid->_ldimensions;
const Coordinate rdims = grid->_rdimensions;
const Coordinate sdims = grid->_simd_layout;
Coordinate processors = grid->_processors;
Coordinate pgdims(Ndim);
pgdims[0] = G;
for(int d=0, dd=1;d<Ndim;d++){
if ( d!=dim ) pgdims[dd++] = ldims[d];
}
int64_t pgvol=1;
for(int d=0;d<Ndim;d++) pgvol*=pgdims[d];
const int Nsimd = vobj::Nsimd();
for(int p=0;p<processors[dim];p++) {
t_copy-=usecond();
autoView(r_v,result,AcceleratorRead);
accelerator_for(idx, grid->oSites(), vobj::Nsimd(), {
#ifdef GRID_SIMT
{
int lane=acceleratorSIMTlane(Nsimd); // buffer lane
#else
for(int lane=0;lane<Nsimd;lane++) {
#endif
Coordinate icoor;
Coordinate ocoor;
Coordinate pgcoor;
Lexicographic::CoorFromIndex(icoor,lane,sdims);
Lexicographic::CoorFromIndex(ocoor,idx,rdims);
pgcoor[0] = ocoor[dim] + icoor[dim]*rdims[dim] + ((pc+p)%processors[dim])*L;
for(int d=0,dd=1;d<Ndim;d++){
if ( d!=dim ) {
pgcoor[dd] = ocoor[d] + icoor[d]*rdims[d];
dd++;
}
}
// Map coordinates in lattice layout to FFTW index
int64_t pgidx;
Lexicographic::IndexFromCoor(pgcoor,pgidx,pgdims);
vector_type *from = (vector_type *)&r_v[idx];
scalar_type stmp;
for(int w=0;w<Ncomp;w++){
int64_t pg_idx = pgidx + w*pgvol;
stmp = getlane(from[w], lane);
pgbuf_v[pg_idx] = stmp;
}
#ifdef GRID_SIMT
}
#else
}
#endif
});
t_copy+=usecond();
if (p != processors[dim] - 1) {
Lattice<vobj> temp(grid);
t_shift-=usecond();
temp = Cshift(result,dim,L); result = temp;
t_shift+=usecond();
}
}
t_pencil += usecond();
FFTW_scalar *in = (FFTW_scalar *)pgbuf_v;
FFTW_scalar *out= (FFTW_scalar *)pgbuf_v;
t_fft = -usecond();
FFTW<scalar>::fftw_execute_dft(p,in,out,sign);
t_fft += usecond();
// performance counting
flops_call = 5.0*howmany*G*log2(G);
usec = t_fft;
flops= flops_call;
result = Zero();
double t_insert = -usecond();
{
autoView(r_v,result,AcceleratorWrite);
accelerator_for(idx,grid->oSites(),Nsimd,{
#ifdef GRID_SIMT
{
int lane=acceleratorSIMTlane(Nsimd); // buffer lane
#else
for(int lane=0;lane<Nsimd;lane++) {
#endif
Coordinate icoor(Ndim);
Coordinate ocoor(Ndim);
Coordinate pgcoor(Ndim);
Lexicographic::CoorFromIndex(icoor,lane,sdims);
Lexicographic::CoorFromIndex(ocoor,idx,rdims);
pgcoor[0] = ocoor[dim] + icoor[dim]*rdims[dim] + pc*L;
for(int d=0,dd=1;d<Ndim;d++){
if ( d!=dim ) {
pgcoor[dd] = ocoor[d] + icoor[d]*rdims[d];
dd++;
}
}
// Map coordinates in lattice layout to FFTW index
int64_t pgidx;
Lexicographic::IndexFromCoor(pgcoor,pgidx,pgdims);
vector_type *to = (vector_type *)&r_v[idx];
scalar_type stmp;
for(int w=0;w<Ncomp;w++){
int64_t pg_idx = pgidx + w*pgvol;
stmp = pgbuf_v[pg_idx];
putlane(to[w], stmp, lane);
}
#ifdef GRID_SIMT
}
#else
}
#endif
});
}
result = result*div;
t_insert +=usecond();
// destroying plan
deviceVector<scalar> dummy(2);
FFTW_scalar *buf = (FFTW_scalar *)&dummy[0];
FFTW_plan p = FFTW<scalar>::fftw_plan_many_dft(1, n, howmany,
buf, n, 1, G,
buf, n, 1, G,
sign, FFTW_ESTIMATE);
FFT_dim_execute(result, source, dim, sign, p, _grid, flops, flops_call, usec);
FFTW<scalar>::fftw_destroy_plan(p);
}
};
t_total +=usecond();
template<class vobj>
class PlannedFFT : public FFTbase {
private:
typedef typename vobj::scalar_type scalar;
typedef typename vobj::scalar_object sobj;
typedef typename vobj::vector_type vector_type;
typedef typename FFTW<scalar>::FFTW_scalar FFTW_scalar;
typedef typename FFTW<scalar>::FFTW_plan FFTW_plan;
std::cout <<GridLogPerformance<< " FFT took "<<t_total/1.0e6 <<" s" << std::endl;
std::cout <<GridLogPerformance<< " FFT pencil "<<t_pencil/1.0e6 <<" s" << std::endl;
std::cout <<GridLogPerformance<< " of which copy "<<t_copy/1.0e6 <<" s" << std::endl;
std::cout <<GridLogPerformance<< " of which shift"<<t_shift/1.0e6 <<" s" << std::endl;
std::cout <<GridLogPerformance<< " FFT kernels "<<t_fft/1.0e6 <<" s" << std::endl;
std::cout <<GridLogPerformance<< " FFT insert "<<t_insert/1.0e6 <<" s" << std::endl;
std::vector<FFTW_plan> forward_plans;
std::vector<FFTW_plan> backward_plans;
void PlanCreate() {
const int Ndim = _grid->Nd();
forward_plans.resize(Ndim);
backward_plans.resize(Ndim);
for (int d = 0; d < Ndim; d++) {
int G = _grid->_fdimensions[d];
int Ncomp = sizeof(sobj) / sizeof(scalar);
int64_t Nperp = 1;
for (int dd = 0; dd < Ndim; dd++)
if (dd != d) Nperp *= _grid->_ldimensions[dd];
int howmany = Ncomp * (int)Nperp;
int n[] = {G};
deviceVector<scalar> dummy(2);
FFTW_scalar *buf = (FFTW_scalar *)&dummy[0];
forward_plans[d] = FFTW<scalar>::fftw_plan_many_dft(1, n, howmany, buf, n, 1, G, buf, n, 1, G, FFTW_FORWARD, FFTW_ESTIMATE);
backward_plans[d] = FFTW<scalar>::fftw_plan_many_dft(1, n, howmany, buf, n, 1, G, buf, n, 1, G, FFTW_BACKWARD, FFTW_ESTIMATE);
}
}
void PlanDestroy() {
for (auto p : forward_plans) FFTW<scalar>::fftw_destroy_plan(p);
for (auto p : backward_plans) FFTW<scalar>::fftw_destroy_plan(p);
forward_plans.clear();
backward_plans.clear();
}
public:
PlannedFFT(GridCartesian *grid) : FFTbase(grid) { PlanCreate(); }
~PlannedFFT() { PlanDestroy(); }
void FFT_dim_mask(Lattice<vobj> &result, const Lattice<vobj> &source, Coordinate mask, int sign) {
const int Ndim = _grid->Nd();
Lattice<vobj> tmp = source;
for (int d = 0; d < Ndim; d++) {
if (mask[d]) {
FFT_dim(result, tmp, d, sign);
tmp = result;
}
}
}
void FFT_all_dim(Lattice<vobj> &result, const Lattice<vobj> &source, int sign) {
Coordinate mask(_grid->Nd(), 1);
FFT_dim_mask(result, source, mask, sign);
}
void FFT_dim(Lattice<vobj> &result, const Lattice<vobj> &source, int dim, int sign) {
GRID_ASSERT(source.Grid() == _grid);
GRID_ASSERT(result.Grid() == _grid);
GRID_ASSERT((int)forward_plans.size() == _grid->Nd());
conformable(result.Grid(), source.Grid());
FFTW_plan p = (sign == forward ? forward_plans : backward_plans)[dim];
FFT_dim_execute(result, source, dim, sign, p, _grid, flops, flops_call, usec);
}
};
+88 -17
View File
@@ -28,6 +28,7 @@ Author: Peter Boyle <pboyle@bnl.gov>
#pragma once
#ifdef GRID_HIP
#include <hip/hip_version.h>
#include <hipblas/hipblas.h>
#endif
#ifdef GRID_CUDA
@@ -255,17 +256,30 @@ public:
if ( OpB == GridBLAS_OP_N ) hOpB = HIPBLAS_OP_N;
if ( OpB == GridBLAS_OP_T ) hOpB = HIPBLAS_OP_T;
if ( OpB == GridBLAS_OP_C ) hOpB = HIPBLAS_OP_C;
#if defined(HIP_VERSION_MAJOR) && (HIP_VERSION_MAJOR >=7)
auto err = hipblasZgemmBatched(gridblasHandle,
hOpA,
hOpB,
m,n,k,
(hipblasDoubleComplex *) &alpha_p[0],
(hipblasDoubleComplex **)&Amk[0], lda,
(hipblasDoubleComplex **)&Bkn[0], ldb,
(hipblasDoubleComplex *) &beta_p[0],
(hipblasDoubleComplex **)&Cmn[0], ldc,
(hipDoubleComplex *) &alpha_p[0],
(hipDoubleComplex **)&Amk[0], lda,
(hipDoubleComplex **)&Bkn[0], ldb,
(hipDoubleComplex *) &beta_p[0],
(hipDoubleComplex **)&Cmn[0], ldc,
batchCount);
// std::cout << " hipblas return code " <<(int)err<<std::endl;
#else
auto err = hipblasZgemmBatched(gridblasHandle,
hOpA,
hOpB,
m,n,k,
(hipblasDoubleComplex *) &alpha_p[0],
(hipblasDoubleComplex **)&Amk[0], lda,
(hipblasDoubleComplex **)&Bkn[0], ldb,
(hipblasDoubleComplex *) &beta_p[0],
(hipblasDoubleComplex **)&Cmn[0], ldc,
batchCount);
#endif
// std::cout << " hipblas return code " <<(int)err<<" "<<__LINE__<<std::endl;
GRID_ASSERT(err==HIPBLAS_STATUS_SUCCESS);
#endif
#ifdef GRID_CUDA
@@ -503,17 +517,31 @@ public:
if ( OpB == GridBLAS_OP_N ) hOpB = HIPBLAS_OP_N;
if ( OpB == GridBLAS_OP_T ) hOpB = HIPBLAS_OP_T;
if ( OpB == GridBLAS_OP_C ) hOpB = HIPBLAS_OP_C;
#if defined(HIP_VERSION_MAJOR) && (HIP_VERSION_MAJOR >=7)
auto err = hipblasCgemmBatched(gridblasHandle,
hOpA,
hOpB,
m,n,k,
(hipblasComplex *) &alpha_p[0],
(hipblasComplex **)&Amk[0], lda,
(hipblasComplex **)&Bkn[0], ldb,
(hipblasComplex *) &beta_p[0],
(hipblasComplex **)&Cmn[0], ldc,
(hipComplex *) &alpha_p[0],
(hipComplex **)&Amk[0], lda,
(hipComplex **)&Bkn[0], ldb,
(hipComplex *) &beta_p[0],
(hipComplex **)&Cmn[0], ldc,
batchCount);
#else
auto err = hipblasCgemmBatched(gridblasHandle,
hOpA,
hOpB,
m,n,k,
(hipblasComplex *) &alpha_p[0],
(hipblasComplex **)&Amk[0], lda,
(hipblasComplex **)&Bkn[0], ldb,
(hipblasComplex *) &beta_p[0],
(hipblasComplex **)&Cmn[0], ldc,
batchCount);
#endif
// std::cout << " hipblas return code " <<(int)err<<" "<<__LINE__<<std::endl;
GRID_ASSERT(err==HIPBLAS_STATUS_SUCCESS);
#endif
#ifdef GRID_CUDA
@@ -550,6 +578,7 @@ public:
(void **)&Cmn[0], CUDA_C_32F, ldc,
batchCount, compute_precision, CUBLAS_GEMM_DEFAULT);
}
// std::cout << " hipblas return code " <<(int)err<<" "<<__LINE__<<std::endl;
GRID_ASSERT(err==CUBLAS_STATUS_SUCCESS);
#endif
#ifdef GRID_SYCL
@@ -720,6 +749,7 @@ public:
(float *) &beta_p[0],
(float **)&Cmn[0], ldc,
batchCount);
// std::cout << " hipblas return code " <<(int)err<<" "<<__LINE__<<std::endl;
GRID_ASSERT(err==HIPBLAS_STATUS_SUCCESS);
#endif
#ifdef GRID_CUDA
@@ -880,6 +910,7 @@ public:
(double *) &beta_p[0],
(double **)&Cmn[0], ldc,
batchCount);
// std::cout << " hipblas return code " <<(int)err<<" "<<__LINE__<<std::endl;
GRID_ASSERT(err==HIPBLAS_STATUS_SUCCESS);
#endif
#ifdef GRID_CUDA
@@ -1094,11 +1125,20 @@ public:
GRID_ASSERT(info.size()==batchCount);
#ifdef GRID_HIP
#if defined(HIP_VERSION_MAJOR) && (HIP_VERSION_MAJOR >=7)
auto err = hipblasZgetrfBatched(gridblasHandle,(int)n,
(hipblasDoubleComplex **)&Ann[0], (int)n,
(hipDoubleComplex **)&Ann[0], (int)n,
(int*) &ipiv[0],
(int*) &info[0],
(int)batchCount);
#else
auto err = hipblasZgetrfBatched(gridblasHandle,(int)n,
(hipblasDoubleComplex **)&Ann[0], (int)n,
(int*) &ipiv[0],
(int*) &info[0],
(int)batchCount);
#endif
// std::cout << " hipblas return code " <<(int)err<<" "<<__LINE__<<std::endl;
GRID_ASSERT(err==HIPBLAS_STATUS_SUCCESS);
#endif
#ifdef GRID_CUDA
@@ -1124,11 +1164,21 @@ public:
GRID_ASSERT(info.size()==batchCount);
#ifdef GRID_HIP
#if defined(HIP_VERSION_MAJOR) && (HIP_VERSION_MAJOR >=7)
auto err = hipblasCgetrfBatched(gridblasHandle,(int)n,
(hipblasComplex **)&Ann[0], (int)n,
(hipComplex **)&Ann[0], (int)n,
(int*) &ipiv[0],
(int*) &info[0],
(int)batchCount);
#else
auto err = hipblasCgetrfBatched(gridblasHandle,(int)n,
(hipblasComplex **)&Ann[0], (int)n,
(int*) &ipiv[0],
(int*) &info[0],
(int)batchCount);
#endif
// std::cout << " hipblas return code " <<(int)err<<" "<<__LINE__<<std::endl;
GRID_ASSERT(err==HIPBLAS_STATUS_SUCCESS);
#endif
#ifdef GRID_CUDA
@@ -1201,12 +1251,23 @@ public:
GRID_ASSERT(Cnn.size()==batchCount);
#ifdef GRID_HIP
#if defined(HIP_VERSION_MAJOR) && (HIP_VERSION_MAJOR >=7)
auto err = hipblasZgetriBatched(gridblasHandle,(int)n,
(hipblasDoubleComplex **)&Ann[0], (int)n,
(hipDoubleComplex **)&Ann[0], (int)n,
(int*) &ipiv[0],
(hipblasDoubleComplex **)&Cnn[0], (int)n,
(hipDoubleComplex **)&Cnn[0], (int)n,
(int*) &info[0],
(int)batchCount);
#else
auto err = hipblasZgetriBatched(gridblasHandle,(int)n,
(hipblasDoubleComplex **)&Ann[0], (int)n,
(int*) &ipiv[0],
(hipblasDoubleComplex **)&Cnn[0], (int)n,
(int*) &info[0],
(int)batchCount);
#endif
// std::cout << " hipblas return code " <<(int)err<<" "<<__LINE__<<std::endl;
GRID_ASSERT(err==HIPBLAS_STATUS_SUCCESS);
#endif
#ifdef GRID_CUDA
@@ -1235,12 +1296,22 @@ public:
GRID_ASSERT(Cnn.size()==batchCount);
#ifdef GRID_HIP
#if defined(HIP_VERSION_MAJOR) && (HIP_VERSION_MAJOR >=7)
auto err = hipblasCgetriBatched(gridblasHandle,(int)n,
(hipblasComplex **)&Ann[0], (int)n,
(hipComplex **)&Ann[0], (int)n,
(int*) &ipiv[0],
(hipblasComplex **)&Cnn[0], (int)n,
(hipComplex **)&Cnn[0], (int)n,
(int*) &info[0],
(int)batchCount);
#else
auto err = hipblasCgetriBatched(gridblasHandle,(int)n,
(hipblasComplex **)&Ann[0], (int)n,
(int*) &ipiv[0],
(hipblasComplex **)&Cnn[0], (int)n,
(int*) &info[0],
(int)batchCount);
#endif
// std::cout << " hipblas return code " <<(int)err<<" "<<__LINE__<<std::endl;
GRID_ASSERT(err==HIPBLAS_STATUS_SUCCESS);
#endif
#ifdef GRID_CUDA
+73 -32
View File
@@ -53,7 +53,22 @@ class TwoLevelCG : public LinearFunction<Field>
// Fine operator, Smoother, CoarseSolver
LinearOperatorBase<Field> &_FineLinop;
LinearFunction<Field> &_Smoother;
GridStopWatch ProjectTimer;
GridStopWatch PromoteTimer;
GridStopWatch CoarseTimer;
GridStopWatch SmoothTimer;
GridStopWatch MatrixTimer;
GridStopWatch M3Timer;
GridStopWatch LinalgTimer;
int64_t M3Calls;
int64_t SmoothCalls;
int64_t MatrixCalls;
int64_t ProjectCalls;
int64_t CoarseCalls;
int64_t PromoteCalls;
// more most opertor functions
TwoLevelCG(RealD tol,
Integer maxit,
@@ -103,12 +118,20 @@ class TwoLevelCG : public LinearFunction<Field>
RealD tn;
GridStopWatch HDCGTimer;
ProjectTimer.Reset();
PromoteTimer.Reset();
CoarseTimer.Reset();
SmoothTimer.Reset();
MatrixTimer.Reset();
M3Timer.Reset();
LinalgTimer.Reset();
M3Calls = SmoothCalls = MatrixCalls = ProjectCalls = CoarseCalls = PromoteCalls = 0;
HDCGTimer.Start();
//////////////////////////
// x0 = Vstart -- possibly modify guess
//////////////////////////
Vstart(x,src);
// r0 = b -A x0
_FineLinop.HermOp(x,mmp[0]);
axpy (r, -1.0,mmp[0], src); // Recomputes r=src-Ax0
@@ -145,33 +168,40 @@ class TwoLevelCG : public LinearFunction<Field>
int peri_kp = (k+1) % mmax;
rtz=rtzp;
M3Timer.Start();
d= PcgM3(p[peri_k],mmp[peri_k]);
M3Timer.Stop();
M3Calls++;
a = rtz/d;
// Memorise this
pAp[peri_k] = d;
LinalgTimer.Start();
axpy(x,a,p[peri_k],x);
RealD rn = axpy_norm(r,-a,mmp[peri_k],r);
LinalgTimer.Stop();
// Compute z = M x
PcgM1(r,z);
{
RealD n1,n2;
n1=norm2(r);
n2=norm2(z);
std::cout << GridLogMessage<<"HDCG::fPcg iteration "<<k<<" : vector r,z "<<n1<<" "<<n2<<"\n";
}
LinalgTimer.Start();
rtzp =real(innerProduct(r,z));
LinalgTimer.Stop();
std::cout << GridLogMessage<<"HDCG::fPcg iteration "<<k<<" : inner rtzp "<<rtzp<<"\n";
// PcgM2(z,p[0]);
PcgM2(z,mu); // ADEF-2 this is identity. Axpy possible to eliminate
p[peri_kp]=mu;
// Standard search direction p -> z + b p
// Standard search direction p -> z + b p
b = (rtzp)/rtz;
int northog;
@@ -202,8 +232,25 @@ class TwoLevelCG : public LinearFunction<Field>
if ( rn <= rsq ) {
HDCGTimer.Stop();
std::cout<<GridLogMessage<<"HDCG: fPcg converged in "<<k<<" iterations and "<<HDCGTimer.Elapsed()<<std::endl;;
std::cout<<GridLogMessage<<"HDCG: fPcg converged in "<<k<<" iterations and "<<HDCGTimer.Elapsed()<<std::endl;
std::cout<<GridLogMessage<<"HDCG: fPcg breakdown"<<std::endl;
auto mspc = [](GridStopWatch &sw, int64_t n) -> double {
return (n > 0) ? sw.useconds() * 1e-3 / n : 0.0;
};
std::cout<<GridLogMessage<<"HDCG: fPcg M3 (fine MVM) "<<M3Timer.Elapsed()
<<" "<<M3Calls<<" calls "<<mspc(M3Timer,M3Calls)<<" ms/call"<<std::endl;
std::cout<<GridLogMessage<<"HDCG: fPcg linalg "<<LinalgTimer.Elapsed()<<std::endl;
std::cout<<GridLogMessage<<"HDCG: fPcg smoother "<<SmoothTimer.Elapsed()
<<" "<<SmoothCalls<<" calls "<<mspc(SmoothTimer,SmoothCalls)<<" ms/call"<<std::endl;
std::cout<<GridLogMessage<<"HDCG: fPcg matrix (in M1) "<<MatrixTimer.Elapsed()
<<" "<<MatrixCalls<<" calls "<<mspc(MatrixTimer,MatrixCalls)<<" ms/call"<<std::endl;
std::cout<<GridLogMessage<<"HDCG: fPcg project "<<ProjectTimer.Elapsed()
<<" "<<ProjectCalls<<" calls "<<mspc(ProjectTimer,ProjectCalls)<<" ms/call"<<std::endl;
std::cout<<GridLogMessage<<"HDCG: fPcg coarse "<<CoarseTimer.Elapsed()
<<" "<<CoarseCalls<<" calls "<<mspc(CoarseTimer,CoarseCalls)<<" ms/call"<<std::endl;
std::cout<<GridLogMessage<<"HDCG: fPcg promote "<<PromoteTimer.Elapsed()
<<" "<<PromoteCalls<<" calls "<<mspc(PromoteTimer,PromoteCalls)<<" ms/call"<<std::endl;
_FineLinop.HermOp(x,mmp[0]);
axpy(tmp,-1.0,src,mmp[0]);
@@ -475,35 +522,29 @@ class TwoLevelADEF2 : public TwoLevelCG<Field>
CoarseField PleftProj(this->coarsegrid);
CoarseField PleftMss_proj(this->coarsegrid);
GridStopWatch SmootherTimer;
GridStopWatch MatrixTimer;
SmootherTimer.Start();
this->SmoothTimer.Start();
this->_Smoother(in,Min);
SmootherTimer.Stop();
this->SmoothTimer.Stop();
this->SmoothCalls++;
MatrixTimer.Start();
this->MatrixTimer.Start();
this->_FineLinop.HermOp(Min,out);
MatrixTimer.Stop();
this->MatrixTimer.Stop();
this->MatrixCalls++;
axpy(tmp,-1.0,out,in); // tmp = in - A Min
GridStopWatch ProjTimer;
GridStopWatch CoarseTimer;
GridStopWatch PromTimer;
ProjTimer.Start();
this->_Aggregates.ProjectToSubspace(PleftProj,tmp);
ProjTimer.Stop();
CoarseTimer.Start();
this->ProjectTimer.Start();
this->_Aggregates.ProjectToSubspace(PleftProj,tmp);
this->ProjectTimer.Stop();
this->ProjectCalls++;
this->CoarseTimer.Start();
this->_CoarseSolver(PleftProj,PleftMss_proj); // Ass^{-1} [in - A Min]_s
CoarseTimer.Stop();
PromTimer.Start();
this->_Aggregates.PromoteFromSubspace(PleftMss_proj,tmp);// tmp = Q[in - A Min]
PromTimer.Stop();
std::cout << GridLogPerformance << "PcgM1 breakdown "<<std::endl;
std::cout << GridLogPerformance << "\tSmoother " << SmootherTimer.Elapsed() <<std::endl;
std::cout << GridLogPerformance << "\tMatrix " << MatrixTimer.Elapsed() <<std::endl;
std::cout << GridLogPerformance << "\tProj " << ProjTimer.Elapsed() <<std::endl;
std::cout << GridLogPerformance << "\tCoarse " << CoarseTimer.Elapsed() <<std::endl;
std::cout << GridLogPerformance << "\tProm " << PromTimer.Elapsed() <<std::endl;
this->CoarseTimer.Stop();
this->CoarseCalls++;
this->PromoteTimer.Start();
this->_Aggregates.PromoteFromSubspace(PleftMss_proj,tmp);// tmp = Q[in - A Min]
this->PromoteTimer.Stop();
this->PromoteCalls++;
axpy(out,1.0,Min,tmp); // Min+tmp
}
+2 -2
View File
@@ -92,8 +92,8 @@ class TwoLevelCGmrhs
// Vector case
virtual void operator() (std::vector<Field> &src, std::vector<Field> &x)
{
// SolveSingleSystem(src,x);
SolvePrecBlockCG(src,x);
SolveSingleSystem(src,x);
// SolvePrecBlockCG(src,x);
}
////////////////////////////////////////////////////////////////////////////////////////////////////
+11 -7
View File
@@ -212,13 +212,17 @@ public:
<< "\tTarget " << Tolerance << std::endl;
// std::cout << GridLogMessage << "\tPreamble " << PreambleTimer.Elapsed() <<std::endl;
std::cout << GridLogMessage << "\tSolver Elapsed " << SolverTimer.Elapsed() <<std::endl;
std::cout << GridLogPerformance << "Time breakdown "<<std::endl;
std::cout << GridLogPerformance << "\tMatrix " << MatrixTimer.Elapsed() <<std::endl;
std::cout << GridLogPerformance << "\tLinalg " << LinalgTimer.Elapsed() <<std::endl;
std::cout << GridLogPerformance << "\t\tInner " << InnerTimer.Elapsed() <<std::endl;
std::cout << GridLogPerformance << "\t\tAxpyNorm " << AxpyNormTimer.Elapsed() <<std::endl;
std::cout << GridLogPerformance << "\t\tLinearComb " << LinearCombTimer.Elapsed() <<std::endl;
std::cout << GridLogMessage << "\tPreamble " << PreambleTimer.Elapsed() <<std::endl;
std::cout << GridLogMessage << "\tConstruct " << ConstructTimer.Elapsed() <<std::endl;
std::cout << GridLogMessage << "\tNorm " << NormTimer.Elapsed() <<std::endl;
std::cout << GridLogMessage << "\tAssign " << AssignTimer.Elapsed() <<std::endl;
std::cout << GridLogMessage << "\tSolver " << SolverTimer.Elapsed() <<std::endl;
std::cout << GridLogMessage << "Solver breakdown "<<std::endl;
std::cout << GridLogMessage << "\tMatrix " << MatrixTimer.Elapsed() <<std::endl;
std::cout << GridLogMessage << "\tLinalg " << LinalgTimer.Elapsed() <<std::endl;
std::cout << GridLogMessage << "\t\tInner " << InnerTimer.Elapsed() <<std::endl;
std::cout << GridLogMessage << "\t\tAxpyNorm " << AxpyNormTimer.Elapsed() <<std::endl;
std::cout << GridLogMessage << "\t\tLinearComb " << LinearCombTimer.Elapsed() <<std::endl;
std::cout << GridLogDebug << "\tMobius flop rate " << DwfFlops/ usecs<< " Gflops " <<std::endl;
@@ -236,4 +236,5 @@ public:
}
};
NAMESPACE_END(Grid);
#undef GCRLogLevel
#endif
@@ -38,13 +38,14 @@ Author: Peter Boyle <paboyle@ph.ed.ac.uk>
///////////////////////////////////////////////////////////////////////////////////////////////////////
NAMESPACE_BEGIN(Grid);
#define GCRLogLevel std::cout << GridLogMessage <<std::string(level,'\t')<< " Level "<<level<<" "
#define GCRLogLevel std::cout << GridLogMessage <<std::string(level,'\t')<< name<<" "
template<class Field>
class PrecGeneralisedConjugateResidualNonHermitian : public LinearFunction<Field> {
public:
using LinearFunction<Field>::operator();
RealD Tolerance;
RealD SSQ;
Integer MaxIterations;
int verbose;
int mmax;
@@ -54,11 +55,18 @@ public:
GridStopWatch PrecTimer;
GridStopWatch MatTimer;
GridStopWatch LinalgTimer;
std::string name;
int ZeroGuess = 0; // caller contract: guess is always zero => first-cycle r0 = src, skip the apply
int FirstCycle = 0;
LinearFunction<Field> &Preconditioner;
LinearOperatorBase<Field> &Linop;
void Level(int lv) { level=lv; };
void Name(std::string _name) { name = _name; };
void Level(int n) { Name("Level " + std::to_string(n)); level = n; }
void SetZeroGuess(int z) { ZeroGuess = z; };
PrecGeneralisedConjugateResidualNonHermitian(RealD tol,Integer maxit,LinearOperatorBase<Field> &_Linop,LinearFunction<Field> &Prec,int _mmax,int _nstep) :
Tolerance(tol),
@@ -67,8 +75,8 @@ public:
Preconditioner(Prec),
mmax(_mmax),
nstep(_nstep)
{
level=1;
{
Level(1);
verbose=1;
};
@@ -77,6 +85,7 @@ public:
// psi=Zero();
RealD cp, ssq,rsq;
ssq=norm2(src);
SSQ=ssq;
rsq=Tolerance*Tolerance*ssq;
Field r(src.Grid());
@@ -89,11 +98,12 @@ public:
SolverTimer.Start();
steps=0;
FirstCycle=1;
for(int k=0;k<MaxIterations;k++){
cp=GCRnStep(src,psi,rsq);
GCRLogLevel <<"PGCR("<<mmax<<","<<nstep<<") "<< steps <<" steps cp = "<<cp<<" target "<<rsq <<std::endl;
GCRLogLevel <<"PGCR("<<mmax<<","<<nstep<<") "<< steps <<" steps cp = "<<sqrt(cp/ssq)<<" target "<<sqrt(rsq/ssq) <<std::endl;
if(cp<rsq) {
@@ -142,21 +152,25 @@ public:
GCRLogLevel<< "PGCR nStep("<<nstep<<")"<<std::endl;
//////////////////////////////////
// initial guess x0 is taken as nonzero.
// r0=src-A x0 = src
// r0 = src - A x0. ZeroGuess: on the first cycle x0==0 by caller
// contract (enforced here), so r0 = src exactly; skip the apply.
// Restart cycles (psi!=0) always do the full computation.
//////////////////////////////////
MatTimer.Start();
Linop.Op(psi,Az);
// zAz = innerProduct(Az,psi);
zAAz= norm2(Az);
MatTimer.Stop();
if (ZeroGuess && FirstCycle) {
psi = Zero();
LinalgTimer.Start();
r = src;
LinalgTimer.Stop();
} else {
MatTimer.Start();
Linop.Op(psi,Az);
MatTimer.Stop();
LinalgTimer.Start();
r=src-Az;
LinalgTimer.Stop();
}
FirstCycle=0;
LinalgTimer.Start();
r=src-Az;
LinalgTimer.Stop();
GCRLogLevel<< "PGCR true residual r = src - A psi "<<norm2(r) <<std::endl;
/////////////////////
// p = Prec(r)
/////////////////////
@@ -181,6 +195,7 @@ public:
cp =norm2(r);
LinalgTimer.Stop();
GCRLogLevel<< "PGCR true residual "<< sqrt(cp/SSQ) <<std::endl;
for(int k=0;k<nstep;k++){
@@ -199,13 +214,12 @@ public:
cp = axpy_norm(r,-a,q[peri_k],r);
LinalgTimer.Stop();
GCRLogLevel<< "PGCR step["<<steps<<"] resid " << cp << " target " <<rsq<<std::endl;
GCRLogLevel<< "PGCR step["<<steps<<"] resid " << sqrt(cp/SSQ)<<std::endl;
if((k==nstep-1)||(cp<rsq)){
return cp;
}
PrecTimer.Start();
Preconditioner(r,z);// solve Az = r
PrecTimer.Stop();
@@ -239,4 +253,6 @@ public:
}
};
NAMESPACE_END(Grid);
#undef GCRLogLevel
#endif
+32 -9
View File
@@ -66,7 +66,21 @@ public:
{
};
void GlobalOrthonormalise(void)
{
// Normalise all vectors
for(int i=0;i<nbasis; i++){
RealD scale = std::pow(norm2(subspace[i]),-0.5);
subspace[i] = subspace[i]*scale;
}
for(int i=0;i<nbasis; i++){
for(int j=0;j<i; j++){
basisOrthogonalize(subspace,subspace[i],j);
}
RealD scale = std::pow(norm2(subspace[i]),-0.5);
subspace[i] = subspace[i]*scale;
}
}
void Orthogonalise(void){
CoarseScalar InnerProd(CoarseGrid);
// std::cout << GridLogMessage <<" Block Gramm-Schmidt pass 1"<<std::endl;
@@ -97,7 +111,7 @@ public:
RealD scale;
ConjugateGradient<FineField> CG(1.0e-3,400,false);
ConjugateGradient<FineField> CG(1.0e-4,2000,false);
FineField noise(FineGrid);
FineField Mn(FineGrid);
@@ -110,14 +124,16 @@ public:
hermop.Op(noise,Mn); std::cout<<GridLogMessage << "noise ["<<b<<"] <n|MdagM|n> "<<norm2(Mn)<<std::endl;
for(int i=0;i<4;i++){
for(int i=0;i<2;i++){
CG(hermop,noise,subspace[b]);
noise = subspace[b];
scale = std::pow(norm2(noise),-0.5);
noise=noise*scale;
hermop.Op(noise,Mn); std::cout<<GridLogMessage << "intermediate["<<i<<"] <i|MdagM|i> "<<norm2(Mn)<<std::endl;
}
hermop.Op(noise,Mn); std::cout<<GridLogMessage << "filtered["<<b<<"] <f|MdagM|f> "<<norm2(Mn)<<std::endl;
@@ -131,7 +147,11 @@ public:
RealD scale;
TrivialPrecon<FineField> simple_fine;
PrecGeneralisedConjugateResidualNonHermitian<FineField> GCR(0.001,30,DiracOp,simple_fine,12,12);
// PrecGeneralisedConjugateResidualNonHermitian<FineField> GCR(0.001,10,DiracOp,simple_fine,30,30);
// PrecGeneralisedConjugateResidualNonHermitian<FineField> GCR(0.001,10,DiracOp,simple_fine,12,12);
// PrecGeneralisedConjugateResidualNonHermitian<FineField> GCR(0.001,30,DiracOp,simple_fine,12,12);
// PrecGeneralisedConjugateResidualNonHermitian<FineField> GCR(0.0005,30,DiracOp,simple_fine,20,20);
PrecGeneralisedConjugateResidualNonHermitian<FineField> GCR(0.0005,30,DiracOp,simple_fine,10,10);
FineField noise(FineGrid);
FineField src(FineGrid);
FineField guess(FineGrid);
@@ -146,16 +166,16 @@ public:
DiracOp.Op(noise,Mn); std::cout<<GridLogMessage << "noise ["<<b<<"] <n|Op|n> "<<innerProduct(noise,Mn)<<std::endl;
for(int i=0;i<2;i++){
for(int i=0;i<3;i++){
// void operator() (const Field &src, Field &psi){
#if 1
std::cout << GridLogMessage << " inverting on noise "<<std::endl;
if (i==0)std::cout << GridLogMessage << " inverting on noise "<<std::endl;
src = noise;
guess=Zero();
GCR(src,guess);
subspace[b] = guess;
#else
std::cout << GridLogMessage << " inverting on zero "<<std::endl;
if (i==0)std::cout << GridLogMessage << " inverting on zero "<<std::endl;
src=Zero();
guess = noise;
GCR(src,guess);
@@ -164,13 +184,16 @@ public:
noise = subspace[b];
scale = std::pow(norm2(noise),-0.5);
noise=noise*scale;
DiracOp.Op(noise,Mn); std::cout<<GridLogMessage << "intermediate["<<i<<"] <f|Op|f> "<<innerProduct(noise,Mn)<<" <f|OpDagOp|f>"<<norm2(Mn)<<std::endl;
}
DiracOp.Op(noise,Mn); std::cout<<GridLogMessage << "filtered["<<b<<"] <f|Op|f> "<<innerProduct(noise,Mn)<<std::endl;
DiracOp.Op(noise,Mn); std::cout<<GridLogMessage << "filtered["<<b<<"] <f|Op|f> "<<innerProduct(noise,Mn)<<" <f|OpDagOp|f>"<<norm2(Mn)<<std::endl;
subspace[b] = noise;
}
GlobalOrthonormalise();
}
////////////////////////////////////////////////////////////////////////////////////////////////
@@ -31,6 +31,7 @@ Author: Peter Boyle <pboyle@bnl.gov>
#include <Grid/lattice/PaddedCell.h>
#include <Grid/stencil/GeneralLocalStencil.h>
#include <Grid/algorithms/deflation/MultiRHSBlockProject.h>
NAMESPACE_BEGIN(Grid);
@@ -66,6 +67,10 @@ public:
std::vector<CoarseMatrix> _Adag;
std::vector<CoarseVector> MultTemporaries;
int64_t MultCalls;
double MultFlopsAccum;
double MultUsecAccum;
///////////////////////
// Interface
///////////////////////
@@ -104,19 +109,20 @@ public:
}
*/
GeneralCoarsenedMatrix(NonLocalStencilGeometry &_geom,GridBase *FineGrid, GridCartesian * CoarseGrid)
GeneralCoarsenedMatrix(NonLocalStencilGeometry &_geom,GridBase *FineGrid, GridCartesian * CoarseGrid,int _herm=1)
: geom(_geom),
_FineGrid(FineGrid),
_CoarseGrid(CoarseGrid),
hermitian(1),
hermitian(_herm),
Cell(_geom.Depth(),_CoarseGrid),
Stencil(Cell.grids.back(),geom.shifts)
Stencil(Cell.grids.back(),geom.shifts),
MultCalls(0), MultFlopsAccum(0.0), MultUsecAccum(0.0)
{
{
int npoint = _geom.npoint;
}
_A.resize(geom.npoint,CoarseGrid);
// _Adag.resize(geom.npoint,CoarseGrid);
if ( !hermitian ) _Adag.resize(geom.npoint,CoarseGrid);
}
void M (const CoarseVector &in, CoarseVector &out)
{
@@ -124,10 +130,10 @@ public:
}
void Mdag (const CoarseVector &in, CoarseVector &out)
{
GRID_ASSERT(hermitian);
Mult(_A,in,out);
// if ( hermitian ) M(in,out);
// else Mult(_Adag,in,out);
if(hermitian)
Mult(_A,in,out);
else
Mult(_Adag,in,out);
}
void Mult (std::vector<CoarseMatrix> &A,const CoarseVector &in, CoarseVector &out)
{
@@ -227,29 +233,28 @@ public:
text+=usecond();
ttot+=usecond();
std::cout << GridLogPerformance<<"Coarse 1rhs Mult Aviews "<<tviews<<" us"<<std::endl;
std::cout << GridLogPerformance<<"Coarse Mult exch "<<texch<<" us"<<std::endl;
std::cout << GridLogPerformance<<"Coarse Mult mult "<<tmult<<" us"<<std::endl;
std::cout << GridLogPerformance<<" of which mult2 "<<tmult2<<" us"<<std::endl;
std::cout << GridLogPerformance<<"Coarse Mult ext "<<text<<" us"<<std::endl;
std::cout << GridLogPerformance<<"Coarse Mult temps "<<ttemps<<" us"<<std::endl;
std::cout << GridLogPerformance<<"Coarse Mult copy "<<tcopy<<" us"<<std::endl;
std::cout << GridLogPerformance<<"Coarse Mult tot "<<ttot<<" us"<<std::endl;
// std::cout << GridLogPerformance<<std::endl;
std::cout << GridLogPerformance<<"Coarse Kernel flops "<< flops<<std::endl;
std::cout << GridLogPerformance<<"Coarse Kernel flop/s "<< flops/tmult<<" mflop/s"<<std::endl;
std::cout << GridLogPerformance<<"Coarse Kernel bytes/s "<< bytes/tmult<<" MB/s"<<std::endl;
std::cout << GridLogPerformance<<"Coarse overall flops/s "<< flops/ttot<<" mflop/s"<<std::endl;
std::cout << GridLogPerformance<<"Coarse total bytes "<< bytes/1e6<<" MB"<<std::endl;
MultCalls++;
MultFlopsAccum += flops;
MultUsecAccum += ttot;
std::cout << GridLogPerformance
<< "Coarse Mult call " << MultCalls
<< " tot " << ttot << " us"
<< " kernel " << tmult << " us"
<< " kernel " << flops/tmult*1e-3 << " GFlop/s"
<< " overall " << MultFlopsAccum/MultUsecAccum*1e-3 << " GFlop/s (cumul)"
<< " bw " << bytes/tmult*1e-3 << " GB/s"
<< std::endl;
};
void PopulateAdag(void)
{
#if 0
// Serial global peek/poke reference implementation
for(int64_t bidx=0;bidx<CoarseGrid()->gSites() ;bidx++){
Coordinate bcoor;
CoarseGrid()->GlobalIndexToGlobalCoor(bidx,bcoor);
for(int p=0;p<geom.npoint;p++){
Coordinate scoor = bcoor;
for(int mu=0;mu<bcoor.size();mu++){
@@ -262,6 +267,36 @@ public:
pokeSite(adj(link),_Adag[pp],bcoor);
}
}
#else
// Parallel: _Adag[pp](x) = adj( _A[p](x + s_pp) ), pp = Reverse(p), s_pp = -s_p.
// The neighbour fetch reuses the same padded-cell + stencil machinery as Mult,
// reading one matrix element per coalesced access so no whole site matrix
// (230KB at nbasis=60) ever lands on a GPU thread stack (HIP limit 128KB).
// Halo sites compute garbage neighbours; Cell.Extract discards them.
// Must run on the unpadded _A, i.e. before ExchangeCoarseLinks.
const int Nsimd = CComplex::Nsimd();
for(int p=0;p<geom.npoint;p++){
int pp = geom.Reverse(p);
CoarseMatrix Apad = Cell.ExchangePeriodic(_A[p]);
CoarseMatrix Dpad(Apad.Grid());
int64_t osites = Apad.Grid()->oSites();
{
autoView( Apad_v , Apad, AcceleratorRead);
autoView( Dpad_v , Dpad, AcceleratorWriteDiscard);
autoView( Stencil_v, Stencil, AcceleratorRead);
accelerator_for(sj, osites*nbasis, Nsimd, {
int32_t ss = sj/nbasis;
int32_t j = sj%nbasis;
auto SE = Stencil_v.GetEntry(pp,ss);
for(int i=0;i<nbasis;i++){
auto z = coalescedReadGeneralPermute(Apad_v[SE->_offset](i,j),SE->_permute,Nd);
coalescedWrite(Dpad_v[ss](j,i),conjugate(z));
}
});
}
_Adag[pp] = Cell.Extract(Dpad);
}
#endif
}
/////////////////////////////////////////////////////////////
//
@@ -417,10 +452,9 @@ public:
int osites=CoarseGrid()->oSites();
autoView( A_v , _A[k], AcceleratorWrite);
autoView( FT_v , FT[k], AcceleratorRead);
accelerator_for(sss, osites, 1, {
for(int j=0;j<nbasis;j++){
A_v[sss](i,j) = FT_v[sss](j);
}
accelerator_for(sss, osites, nbasis, {
int j = acceleratorSIMTlane(nbasis);
A_v[sss](i,j) = FT_v[sss](j);
});
}
tinv+=usecond();
@@ -428,8 +462,8 @@ public:
// Only needed if nonhermitian
if ( ! hermitian ) {
// std::cout << GridLogMessage<<"PopulateAdag "<<std::endl;
// PopulateAdag();
std::cout << GridLogMessage<<"PopulateAdag "<<std::endl;
PopulateAdag();
}
// Need to write something to populate Adag from A
@@ -517,13 +551,9 @@ public:
// Now compute the matrix elements of linop between the orthonormal
// set of vectors.
///////////////////////////////////////////////////////////////////////
FineField phaV(grid); // Phased block basis vector
FineField MphaV(grid);// Matrix applied
std::vector<FineComplexField> phaF(npoint,grid);
std::vector<CoarseComplexField> pha(npoint,CoarseGrid());
CoarseVector coarseInner(CoarseGrid());
typedef typename CComplex::scalar_type SComplex;
FineComplexField one(grid); one=SComplex(1.0);
FineComplexField zz(grid); zz = Zero();
@@ -542,37 +572,52 @@ public:
pha[p] =exp(pha[p]*ci);
blockZAXPY(phaF[p],pha[p],one,zz);
}
tphase+=usecond();
std::vector<CoarseVector> ComputeProj(npoint,CoarseGrid());
std::vector<CoarseVector> FT(npoint,CoarseGrid());
// Import basis into BLAS layout once; blockProject then reads it once per
// basis vector rather than once per (i,p) as in scalar blockProject.
// Process all npoint in a single batch.
MultiRHSBlockProject<FineField> Projector;
Projector.Allocate(nbasis, grid, CoarseGrid());
Projector.ImportBasis(U.subspace);
std::vector<FineField> phaV_batch(npoint, grid);
std::vector<FineField> MphaV_batch(npoint, grid);
std::vector<CoarseVector> proj_batch(npoint, CoarseGrid());
std::vector<CoarseVector> ComputeProj(npoint, CoarseGrid());
std::vector<CoarseVector> FT(npoint, CoarseGrid());
// Pre-allocate BLAS_F and BLAS_C to avoid repeated hipMalloc/hipFree of
// ~5.6 GB per blockProject call, which hangs on ROCm for large allocations.
Projector.BLAS_F.resize(Projector.fine_vol * Projector.words * npoint);
Projector.BLAS_C.resize(Projector.coarse_vol * nbasis * npoint);
for(int i=0;i<nbasis;i++){// Loop over basis vectors
accelerator_barrier(); // ensure prior iteration's async writes are retired
std::cout << GridLogMessage<< "CoarsenMatrixColoured vec "<<i<<"/"<<nbasis<< std::endl;
for(int p=0;p<npoint;p++){ // Loop over momenta in npoint
tphaseBZ-=usecond();
phaV = phaF[p]*V.subspace[i];
tphaseBZ+=usecond();
/////////////////////////////////////////////////////////////////////
// Multiple phased subspace vector by matrix and project to subspace
// Remove local bulk phase to leave relative phases
/////////////////////////////////////////////////////////////////////
tmat-=usecond();
linop.Op(phaV,MphaV);
tmat+=usecond();
// std::cout << i << " " <<p << " MphaV "<<norm2(MphaV)<<" "<<norm2(phaV)<<std::endl;
tphaseBZ-=usecond();
for(int p=0;p<npoint;p++)
phaV_batch[p] = phaF[p] * V.subspace[i];
tphaseBZ+=usecond();
std::cout << GridLogMessage<< "CoarsenMatrixColoured vec "<<i<<" phaseBZ done"<< std::endl;
tproj-=usecond();
blockProject(coarseInner,MphaV,U.subspace);
coarseInner = conjugate(pha[p]) * coarseInner;
tmat-=usecond();
for(int p=0;p<npoint;p++)
linop.Op(phaV_batch[p], MphaV_batch[p]);
tmat+=usecond();
std::cout << GridLogMessage<< "CoarsenMatrixColoured vec "<<i<<" mat done"<< std::endl;
ComputeProj[p] = coarseInner;
tproj+=usecond();
// std::cout << i << " " <<p << " ComputeProj "<<norm2(ComputeProj[p])<<std::endl;
}
// One batched GEMM reads BLAS_V once for all npoint vectors.
tproj-=usecond();
Projector.blockProject(MphaV_batch, proj_batch);
std::cout << GridLogMessage<< "CoarsenMatrixColoured vec "<<i<<" blockProject done"<< std::endl;
for(int p=0;p<npoint;p++)
ComputeProj[p] = conjugate(pha[p]) * proj_batch[p];
tproj+=usecond();
std::cout << GridLogMessage<< "CoarsenMatrixColoured vec "<<i<<" proj done"<< std::endl;
tinv-=usecond();
for(int k=0;k<npoint;k++){
@@ -580,14 +625,13 @@ public:
for(int l=0;l<npoint;l++){
FT[k]= FT[k]+ invMkl(l,k)*ComputeProj[l];
}
int osites=CoarseGrid()->oSites();
autoView( A_v , _A[k], AcceleratorWrite);
autoView( FT_v , FT[k], AcceleratorRead);
accelerator_for(sss, osites, 1, {
for(int j=0;j<nbasis;j++){
A_v[sss](i,j) = FT_v[sss](j);
}
accelerator_for(sss, osites, nbasis, {
int j = acceleratorSIMTlane(nbasis);
A_v[sss](i,j) = FT_v[sss](j);
});
}
tinv+=usecond();
@@ -595,13 +639,13 @@ public:
// Only needed if nonhermitian
if ( ! hermitian ) {
// std::cout << GridLogMessage<<"PopulateAdag "<<std::endl;
// PopulateAdag();
std::cout << GridLogMessage<<"PopulateAdag "<<std::endl;
PopulateAdag();
}
for(int p=0;p<geom.npoint;p++){
std::cout << " _A["<<p<<"] "<<norm2(_A[p])<<std::endl;
}
// for(int p=0;p<geom.npoint;p++){
// std::cout << " _A["<<p<<"] "<<norm2(_A[p])<<std::endl;
// }
// Need to write something to populate Adag from A
ExchangeCoarseLinks();
@@ -616,7 +660,7 @@ public:
void ExchangeCoarseLinks(void){
for(int p=0;p<geom.npoint;p++){
_A[p] = Cell.ExchangePeriodic(_A[p]);
// _Adag[p]= Cell.ExchangePeriodic(_Adag[p]);
if ( !hermitian ) _Adag[p]= Cell.ExchangePeriodic(_Adag[p]);
}
}
virtual void Mdiag (const Field &in, Field &out){ GRID_ASSERT(0);};
+4 -6
View File
@@ -63,12 +63,10 @@ void MemoryManager::PrintBytes(void)
std::cout << " MemoryManager : "<<(total_device>>20)<<" accelerator Mbytes "<<std::endl;
std::cout << " MemoryManager : "<<(total_host>>20) <<" cpu Mbytes "<<std::endl;
uint64_t cacheBytes;
cacheBytes = CacheBytes[Cpu];
std::cout << " MemoryManager : "<<(cacheBytes>>20) <<" cpu cache Mbytes "<<std::endl;
cacheBytes = CacheBytes[Acc];
std::cout << " MemoryManager : "<<(cacheBytes>>20) <<" acc cache Mbytes "<<std::endl;
cacheBytes = CacheBytes[Shared];
std::cout << " MemoryManager : "<<(cacheBytes>>20) <<" shared cache Mbytes "<<std::endl;
cacheBytes = HostCacheBytes();
std::cout << " MemoryManager : "<<(cacheBytes>>20) <<" cpu alloc cache Mbytes "<<std::endl;
cacheBytes = DeviceCacheBytes();
std::cout << " MemoryManager : "<<(cacheBytes>>20) <<" acc alloc cache Mbytes "<<std::endl;
#ifdef GRID_CUDA
cuda_mem();
+2 -1
View File
@@ -113,7 +113,7 @@ private:
static void *Insert(void *ptr,size_t bytes,AllocationCacheEntry *entries,int ncache,int &victim,uint64_t &cbytes) ;
static void *Lookup(size_t bytes,AllocationCacheEntry *entries,int ncache,uint64_t &cbytes) ;
public:
public:
static void PrintBytes(void);
static void Audit(std::string s);
static void Init(void);
@@ -215,6 +215,7 @@ private:
static void NotifyDeletion(void * CpuPtr);
static void Print(void);
static void PrintAll(void);
static void EvictAll(void);
static void PrintState( void* CpuPtr);
static int isOpen (void* CpuPtr);
static void ViewClose(void* CpuPtr,ViewMode mode);
+55 -8
View File
@@ -79,6 +79,25 @@ void MemoryManager::EntryErase(uint64_t CpuPtr)
auto AccCache = EntryLookup(CpuPtr);
AccViewTable.erase(CpuPtr);
}
/////////////////////////////////////////////////////////////////////////////////
// LRU membership invariant:
//
// LRU_valid == 1 <=> AccPtr != NULL && accLock == 0 && cpuLock == 0
//
// i.e. the LRU queue contains exactly the device-resident, completely unlocked
// entries -- the evictable set. Membership is maintained EAGERLY at the lock
// 0<->1 edges, O(1) via the stored LRU_entry iterator:
//
// AcceleratorViewOpen lock 0->1 : LRUremove (gated on LRU_valid)
// AcceleratorViewClose accLock->0: LRUinsert (AccPtr necessarily exists)
// CpuViewOpen lock 0->1 : LRUremove (gated on LRU_valid)
// CpuViewClose cpuLock->0: LRUinsert (iff AccPtr exists)
// Evict/AccDiscard : LRUremove (frees the device copy)
//
// Consequences: victims taken from LRU.back() are evictable by construction;
// Evict() on a locked entry is an invariant violation (asserted), and the
// eviction loops (EvictVictims/EvictAll) cannot spin.
/////////////////////////////////////////////////////////////////////////////////
void MemoryManager::LRUinsert(AcceleratorViewEntry &AccCache)
{
GRID_ASSERT(AccCache.LRU_valid==0);
@@ -130,21 +149,21 @@ void MemoryManager::Evict(AcceleratorViewEntry &AccCache)
{
///////////////////////////////////////////////////////////////////////////
// Make CPU consistent, remove from Accelerator, remove from LRU, LEAVE CPU only entry
// Cannot be acclocked. If allocated must be in LRU pool.
// Cannot be locked. If allocated must be in LRU pool.
//
// Nov 2022... Felix issue: Allocating two CpuPtrs, can have an entry in LRU-q with CPUlock.
// and require to evict the AccPtr copy. Eviction was a mistake in CpuViewOpen
// but there is a weakness where CpuLock entries are attempted for erase
// Take these OUT LRU queue when CPU locked?
// Cannot take out the table as cpuLock data is important.
// (Historical: a Nov 2022 incident (two CpuPtrs; eviction called from
// CpuViewOpen -- since excised) could present a cpuLocked entry here, and
// silent-return guards were added. The LRU membership invariant (see
// LRUinsert) now excludes ALL locked entries from the queue eagerly at the
// lock edges, so a locked victim is an invariant violation: asserted.)
///////////////////////////////////////////////////////////////////////////
GRID_ASSERT(AccCache.state!=Empty);
mprintf("MemoryManager: Evict CpuPtr %lx AccPtr %lx cpuLock %ld accLock %ld",
(uint64_t)AccCache.CpuPtr,(uint64_t)AccCache.AccPtr,
(uint64_t)AccCache.cpuLock,(uint64_t)AccCache.accLock);
if (AccCache.accLock!=0) return;
if (AccCache.cpuLock!=0) return;
GRID_ASSERT(AccCache.accLock==0);
GRID_ASSERT(AccCache.cpuLock==0);
if(AccCache.state==AccDirty) {
Flush(AccCache);
}
@@ -250,6 +269,19 @@ void MemoryManager::EvictVictims(uint64_t bytes)
}
}
}
void MemoryManager::EvictAll(void)
{
while(LRU.size()>0){
if ( DeviceLRUBytes > 0){
uint64_t victim = LRU.back(); // From the LRU
auto AccCacheIterator = EntryLookup(victim);
auto & AccCache = AccCacheIterator->second;
Evict(AccCache);
} else {
return;
}
}
}
uint64_t MemoryManager::AcceleratorViewOpen(uint64_t CpuPtr,size_t bytes,ViewMode mode,ViewAdvise hint)
{
////////////////////////////////////////////////////////////////////////////
@@ -383,6 +415,13 @@ void MemoryManager::CpuViewClose(uint64_t CpuPtr)
GRID_ASSERT(AccCache.accLock==0);
AccCache.cpuLock--;
// Return to LRU queue when fully unlocked -- mirrors AcceleratorViewClose.
// Asymmetry vs the Acc side: a device copy need not exist for a host view;
// only device-resident entries belong in the (evictable) LRU queue.
if( (AccCache.cpuLock==0) && (AccCache.AccPtr!=(uint64_t)NULL) ) {
dprintf("CpuViewClose %lx cpuLock decremented to zero, move to LRU queue",(uint64_t)CpuPtr);
LRUinsert(AccCache);
}
}
/*
* Action State StateNext Flush Clone
@@ -449,6 +488,14 @@ uint64_t MemoryManager::CpuViewOpen(uint64_t CpuPtr,size_t bytes,ViewMode mode,V
GRID_ASSERT(0); // should be unreachable
}
GRID_ASSERT(AccCache.cpuLock>0);
// If view is opened on host must remove from LRU -- mirrors AcceleratorViewOpen.
// LRU_valid==1 here implies this is the 0->1 lock edge of a device-resident entry.
if(AccCache.LRU_valid==1){
dprintf("CpuViewOpen: entry removed from LRU ");
LRUremove(AccCache);
}
AccCache.transient= transient? EvictNext : 0;
return AccCache.CpuPtr;
+10
View File
@@ -238,6 +238,16 @@ public:
}
void AllToAll(int dim ,void *in,void *out,uint64_t words,uint64_t bytes);
void AllToAll(void *in,void *out,uint64_t words ,uint64_t bytes);
////////////////////////////////////////////////////////////////////////////
// Variable count all to all. Counts and displacements are in units of
// "bytes" sized words and are indexed by rank within this communicator.
// For exchanges that are a permutation but do not divide evenly between
// ranks; AllToAll above is the uniform count special case.
////////////////////////////////////////////////////////////////////////////
void AllToAllV(void *in ,const std::vector<int> &sendcounts,const std::vector<int> &senddispls,
void *out,const std::vector<int> &recvcounts,const std::vector<int> &recvdispls,
uint64_t bytes);
template<class obj> void Broadcast(int root,obj &data)
{
+20
View File
@@ -945,5 +945,25 @@ void CartesianCommunicator::AllToAll(void *in,void *out,uint64_t words,uint64_t
MPI_Alltoall(in,iwords,object,out,iwords,object,communicator);
MPI_Type_free(&object);
}
void CartesianCommunicator::AllToAllV(void *in ,const std::vector<int> &sendcounts,const std::vector<int> &senddispls,
void *out,const std::vector<int> &recvcounts,const std::vector<int> &recvdispls,
uint64_t bytes)
{
FlightRecorder::StepLog("AllToAllV");
GRID_ASSERT(sendcounts.size()==(size_t)_Nprocessors);
GRID_ASSERT(senddispls.size()==(size_t)_Nprocessors);
GRID_ASSERT(recvcounts.size()==(size_t)_Nprocessors);
GRID_ASSERT(recvdispls.size()==(size_t)_Nprocessors);
// MPI counts are "int"; the caller sizes the word to keep them in range
int ibytes = bytes;
GRID_ASSERT(bytes == (uint64_t)ibytes);
MPI_Datatype object;
MPI_Type_contiguous(ibytes,MPI_BYTE,&object);
MPI_Type_commit(&object);
int ierr = MPI_Alltoallv(in ,(int *)&sendcounts[0],(int *)&senddispls[0],object,
out,(int *)&recvcounts[0],(int *)&recvdispls[0],object,communicator);
GRID_ASSERT(ierr==0);
MPI_Type_free(&object);
}
NAMESPACE_END(Grid);
+11
View File
@@ -113,6 +113,17 @@ void CartesianCommunicator::AllToAll(void *in,void *out,uint64_t words,uint64_t
{
bcopy(in,out,bytes*words);
}
void CartesianCommunicator::AllToAllV(void *in ,const std::vector<int> &sendcounts,const std::vector<int> &senddispls,
void *out,const std::vector<int> &recvcounts,const std::vector<int> &recvdispls,
uint64_t bytes)
{
// Single rank: the exchange degenerates to a copy of our own segment
GRID_ASSERT(sendcounts.size()==1);
GRID_ASSERT(recvcounts.size()==1);
GRID_ASSERT(sendcounts[0]==recvcounts[0]);
bcopy((char *)in +(uint64_t)senddispls[0]*bytes,
(char *)out+(uint64_t)recvdispls[0]*bytes,bytes*(uint64_t)sendcounts[0]);
}
int CartesianCommunicator::RankWorld(void){return 0;}
void CartesianCommunicator::Barrier(void){}
+2 -2
View File
@@ -289,7 +289,7 @@ public:
///////////////////////////////////////////
// move constructor
///////////////////////////////////////////
Lattice(Lattice && r){
Lattice(Lattice && r) noexcept {
this->_grid = r.Grid();
this->_odata = r._odata;
this->_odata_size = r._odata_size;
@@ -330,7 +330,7 @@ public:
///////////////////////////////////////////
// Move assignment possible if same type
///////////////////////////////////////////
inline Lattice<vobj> & operator = (Lattice<vobj> && r){
inline Lattice<vobj> & operator = (Lattice<vobj> && r) noexcept {
resize(0); // deletes if appropriate
this->_grid = r.Grid();
+178 -22
View File
@@ -197,12 +197,15 @@ __global__ void reduceKernel(const vobj *lat, sobj *buffer, Iterator n) {
/////////////////////////////////////////////////////////////////////////////////////////////////////////
// Possibly promote to double and sum
/////////////////////////////////////////////////////////////////////////////////////////////////////////
#undef GRID_REDUCTION_TIMING
template <class vobj>
inline typename vobj::scalar_objectD sumD_gpu_small(const vobj *lat, Integer osites)
inline typename vobj::scalar_objectD sumD_gpu_small(const vobj *lat, Integer osites)
{
typedef typename vobj::scalar_objectD sobj;
typedef decltype(lat) Iterator;
Integer nsimd= vobj::Nsimd();
Integer size = osites*nsimd;
@@ -211,41 +214,188 @@ inline typename vobj::scalar_objectD sumD_gpu_small(const vobj *lat, Integer osi
GRID_ASSERT(ok);
Integer smemSize = numThreads * sizeof(sobj);
// Move out of UVM
// Turns out I had messed up the synchronise after move to compute stream
// as running this on the default stream fools the synchronise
deviceVector<sobj> buffer(numBlocks);
sobj *buffer_v = &buffer[0];
sobj result;
#ifdef GRID_REDUCTION_TIMING
RealD t_kernel = -usecond();
#endif
reduceKernel<<< numBlocks, numThreads, smemSize, computeStream >>>(lat, buffer_v, size);
accelerator_barrier();
#ifdef GRID_REDUCTION_TIMING
t_kernel += usecond();
RealD t_d2h = -usecond();
#endif
acceleratorCopyFromDevice(buffer_v,&result,sizeof(result));
#ifdef GRID_REDUCTION_TIMING
t_d2h += usecond();
std::cout << GridLogDebug << " sumD_gpu_small"
<< " sizeof(sobj)=" << sizeof(sobj)
<< " blocks=" << numBlocks << " threads=" << numThreads
<< " kernel+barrier=" << t_kernel << " us"
<< " D2H=" << t_d2h << " us" << std::endl;
#endif
return result;
}
// Fused pack+reduce: reads R words of each vobj at word offset 'base',
// accumulates directly into iVector<iScalar<scalarD>,R> without staging
// through an intermediate bundle buffer. One HBM pass instead of three.
template <int R, class vobj, class sobj, class Iterator>
__device__ void packReduceBlocks(
const iScalar<typename vobj::vector_type> *idat,
sobj *g_odata, Iterator osites, int base, int words)
{
constexpr Iterator nsimd = vobj::Nsimd();
Iterator blockSize = blockDim.x;
extern __shared__ __align__(COALESCE_GRANULARITY) unsigned char shmem_pointer[];
sobj *sdata = (sobj *)shmem_pointer;
Iterator tid = threadIdx.x;
Iterator i = blockIdx.x * (blockSize * 2) + threadIdx.x;
Iterator gridSize = blockSize * 2 * gridDim.x;
sobj mySum = Zero();
while (i < osites * nsimd) {
Iterator lane = i % nsimd;
Iterator ss = i / nsimd;
sobj tmpD; zeroit(tmpD);
for (int k = 0; k < R; k++) {
auto w = extractLane(lane, idat[ss * words + base + k]);
iScalar<typename vobj::scalar_typeD> wd; wd = w;
tmpD._internal[k] = wd;
}
mySum += tmpD;
if (i + blockSize < osites * nsimd) {
lane = (i + blockSize) % nsimd;
ss = (i + blockSize) / nsimd;
sobj tmpD2; zeroit(tmpD2);
for (int k = 0; k < R; k++) {
auto w = extractLane(lane, idat[ss * words + base + k]);
iScalar<typename vobj::scalar_typeD> wd; wd = w;
tmpD2._internal[k] = wd;
}
mySum += tmpD2;
}
i += gridSize;
}
reduceBlock(sdata, mySum, tid);
if (tid == 0) g_odata[blockIdx.x] = sdata[0];
}
template <int R, class vobj, class sobj, class Iterator>
__global__ void packReduceKernel(
const iScalar<typename vobj::vector_type> *idat,
sobj *buffer, Iterator osites, int base, int words)
{
Iterator blockSize = blockDim.x;
packReduceBlocks<R, vobj, sobj>(idat, buffer, osites, base, words);
if (gridDim.x > 1) {
const Iterator tid = threadIdx.x;
__shared__ bool amLast;
extern __shared__ __align__(COALESCE_GRANULARITY) unsigned char shmem_pointer[];
sobj *smem = (sobj *)shmem_pointer;
acceleratorFence();
if (tid == 0) {
unsigned int ticket = atomicInc(&retirementCount, gridDim.x);
amLast = (ticket == gridDim.x - 1);
}
acceleratorSynchroniseAll();
if (amLast) {
Iterator i = tid;
sobj mySum = Zero();
while (i < (Iterator)gridDim.x) {
mySum += buffer[i];
i += blockSize;
}
reduceBlock(smem, mySum, tid);
if (tid == 0) {
buffer[0] = smem[0];
retirementCount = 0;
}
}
}
}
template<int R, class vobj>
inline void sumD_gpu_reduce_words(const vobj *lat, Integer osites,
typename vobj::scalar_typeD *ret_p, int base)
{
typedef typename vobj::vector_type vector;
typedef typename vobj::scalar_typeD scalarD;
using BundleScalarD = iVector<iScalar<scalarD>, R>;
constexpr int Nsimd = vobj::Nsimd();
const int words = sizeof(vobj) / sizeof(vector);
const iScalar<vector> *idat = (const iScalar<vector> *)lat;
Integer size = (Integer)osites * Nsimd;
Integer numThreads, numBlocks;
int ok = getNumBlocksAndThreads(size, sizeof(BundleScalarD), numThreads, numBlocks);
GRID_ASSERT(ok);
Integer smemSize = numThreads * sizeof(BundleScalarD);
deviceVector<BundleScalarD> buffer(numBlocks);
BundleScalarD *buffer_v = &buffer[0];
BundleScalarD result;
#ifdef GRID_REDUCTION_TIMING
RealD t_kernel = -usecond();
#endif
packReduceKernel<R, vobj, BundleScalarD, Integer>
<<<numBlocks, numThreads, smemSize, computeStream>>>
(idat, buffer_v, osites, base, words);
accelerator_barrier();
#ifdef GRID_REDUCTION_TIMING
t_kernel += usecond();
RealD t_d2h = -usecond();
#endif
acceleratorCopyFromDevice(buffer_v, &result, sizeof(result));
#ifdef GRID_REDUCTION_TIMING
t_d2h += usecond();
std::cout << GridLogDebug << " sumD_gpu_reduce_words R=" << R
<< " base=" << base
<< " kernel=" << t_kernel << " D2H=" << t_d2h << " us" << std::endl;
#endif
for (int k = 0; k < R; k++)
ret_p[base + k] = TensorRemove(result._internal[k]);
}
template <class vobj>
inline typename vobj::scalar_objectD sumD_gpu_large(const vobj *lat, Integer osites)
{
typedef typename vobj::vector_type vector;
typedef typename vobj::scalar_typeD scalarD;
typedef typename vobj::scalar_objectD sobj;
sobj ret;
typedef typename vobj::vector_type vector;
typedef typename vobj::scalar_typeD scalarD;
typedef typename vobj::scalar_objectD sobjD;
const int words = sizeof(vobj) / sizeof(vector);
sobjD ret; zeroit(ret);
scalarD *ret_p = (scalarD *)&ret;
const int words = sizeof(vobj)/sizeof(vector);
deviceVector<vector> buffer(osites);
vector *dat = (vector *)lat;
vector *buf = &buffer[0];
iScalar<vector> *tbuf =(iScalar<vector> *) &buffer[0];
for(int w=0;w<words;w++) {
#ifdef GRID_REDUCTION_TIMING
RealD t_large = -usecond();
#endif
int w = 0;
while (w + 12 <= words) { sumD_gpu_reduce_words<12>(lat, osites, ret_p, w); w += 12; }
while (w + 4 <= words) { sumD_gpu_reduce_words< 4>(lat, osites, ret_p, w); w += 4; }
while (w < words) { sumD_gpu_reduce_words< 1>(lat, osites, ret_p, w); w += 1; }
#ifdef GRID_REDUCTION_TIMING
t_large += usecond();
std::cout << GridLogDebug << "sumD_gpu_large"
<< " sizeof(sobjD)=" << sizeof(sobjD)
<< " words=" << words << " total=" << t_large << " us" << std::endl;
#endif
accelerator_for(ss,osites,1,{
buf[ss] = dat[ss*words+w];
});
ret_p[w] = sumD_gpu_small(tbuf,osites);
}
return ret;
}
@@ -288,5 +438,11 @@ inline typename vobj::scalar_object sum_gpu_large(const vobj *lat, Integer osite
result = sumD_gpu_large(lat,osites);
return result;
}
template<class Word> Word checksum_gpu(Word *vec,uint64_t L)
{
Word w;
bzero(&w,sizeof(w));
return w;
}
NAMESPACE_END(Grid);
+15 -16
View File
@@ -6,28 +6,27 @@ NAMESPACE_BEGIN(Grid);
template <class vobj>
inline typename vobj::scalar_objectD sumD_gpu_tensor(const vobj *lat, Integer osites)
inline typename vobj::scalar_objectD sumD_gpu_tensor(const vobj *lat, Integer osites)
{
typedef typename vobj::scalar_object sobj;
typedef typename vobj::scalar_object sobj;
typedef typename vobj::scalar_objectD sobjD;
sobj identity; zeroit(identity);
sobj ret; zeroit(ret);
Integer nsimd= vobj::Nsimd();
{
sycl::buffer<sobj, 1> abuff(&ret, {1});
sobjD identity; zeroit(identity);
sobjD ret; zeroit(ret);
{
sycl::buffer<sobjD, 1> abuff(&ret, {1});
theGridAccelerator->submit([&](sycl::handler &cgh) {
auto Reduction = sycl::reduction(abuff,cgh,identity,std::plus<>());
cgh.parallel_for(sycl::range<1>{osites},
Reduction,
[=] (sycl::id<1> item, auto &sum) {
auto osite = item[0];
sum +=Reduce(lat[osite]);
});
auto Reduction = sycl::reduction(abuff, cgh, identity, std::plus<>());
cgh.parallel_for(sycl::range<1>{(size_t)osites},
Reduction,
[=](sycl::id<1> item, auto &sum) {
sobj s = Reduce(lat[item[0]]);
sobjD sd; sd = s;
sum += sd;
});
});
}
sobjD dret; convertType(dret,ret);
return dret;
return ret;
}
template <class vobj>
+9 -3
View File
@@ -1,7 +1,6 @@
#pragma once
#if defined(GRID_CUDA)
#include <cub/cub.cuh>
#define gpucub cub
#define gpuError_t cudaError_t
@@ -57,8 +56,13 @@ inline void sliceSumReduction_cub_small(const vobj *Data,
//copy offsets to device
acceleratorCopyToDeviceAsynch(&offsets[0],d_offsets,sizeof(int)*(rd+1),computeStream);
#if defined(__CUDACC__) && (__CUDACC_VER_MAJOR__ >= 13)
#define GRID_CUB_SUM_OP ::cuda::std::plus<>{}
#else
#define GRID_CUB_SUM_OP ::gpucub::Sum()
#endif
gpuError_t gpuErr = gpucub::DeviceSegmentedReduce::Reduce(temp_storage_array, temp_storage_bytes, rb_p,d_out, rd, d_offsets, d_offsets+1, ::gpucub::Sum(), zero_init, computeStream);
gpuError_t gpuErr = gpucub::DeviceSegmentedReduce::Reduce(temp_storage_array, temp_storage_bytes, rb_p,d_out, rd, d_offsets, d_offsets+1, GRID_CUB_SUM_OP, zero_init, computeStream);
if (gpuErr!=gpuSuccess) {
std::cout << GridLogError << "Lattice_slicesum_gpu.h: Encountered error during gpucub::DeviceSegmentedReduce::Reduce (setup)! Error: " << gpuErr <<std::endl;
exit(EXIT_FAILURE);
@@ -82,11 +86,13 @@ inline void sliceSumReduction_cub_small(const vobj *Data,
});
//issue segmented reductions in computeStream
gpuErr = gpucub::DeviceSegmentedReduce::Reduce(temp_storage_array, temp_storage_bytes, rb_p, d_out, rd, d_offsets, d_offsets+1,::gpucub::Sum(), zero_init, computeStream);
gpuErr = gpucub::DeviceSegmentedReduce::Reduce(temp_storage_array, temp_storage_bytes, rb_p, d_out, rd, d_offsets, d_offsets+1, GRID_CUB_SUM_OP, zero_init, computeStream);
if (gpuErr!=gpuSuccess) {
std::cout << GridLogError << "Lattice_slicesum_gpu.h: Encountered error during gpucub::DeviceSegmentedReduce::Reduce! Error: " << gpuErr <<std::endl;
exit(EXIT_FAILURE);
}
#undef GRID_CUB_SUM_OP
acceleratorCopyFromDeviceAsynch(d_out,&lvSum[0],rd*sizeof(vobj),computeStream);
+62
View File
@@ -124,6 +124,68 @@ Lattice<iScalar<iScalar<iMatrix<vComplexD, N> > > > Inverse(const Lattice<iScala
return ret;
}
template<int N>
Lattice<iMatrix<iScalar<iScalar<iScalar<vComplexD> > > , N> > Inverse(const Lattice<iMatrix<iScalar<iScalar<iScalar<vComplexD> > >, N> > &Umu)
{
GridBase *grid=Umu.Grid();
auto lvol = grid->lSites();
Lattice<iMatrix<iScalar<iScalar<iScalar<vComplexD> > >, N > > ret(grid);
autoView(Umu_v,Umu,CpuRead);
autoView(ret_v,ret,CpuWrite);
thread_for(site,lvol,{
Eigen::MatrixXcd EigenU = Eigen::MatrixXcd::Zero(N,N);
Coordinate lcoor;
grid->LocalIndexToLocalCoor(site, lcoor);
iMatrix<iScalar<iScalar<iScalar<ComplexD> > >, N > Us;
iMatrix<iScalar<iScalar<iScalar<ComplexD> > >, N > Ui;
peekLocalSite(Us, Umu_v, lcoor);
for(int i=0;i<N;i++){
for(int j=0;j<N;j++){
EigenU(i,j) = Us(i,j)()()();
}}
Eigen::MatrixXcd EigenUinv = EigenU.inverse();
for(int i=0;i<N;i++){
for(int j=0;j<N;j++){
Ui(i,j)()()() = EigenUinv(i,j);
}}
pokeLocalSite(Ui,ret_v,lcoor);
});
return ret;
}
template<int N>
Lattice<iMatrix<iScalar<iScalar<iScalar<iScalar<vComplexD> > > > , N> > Inverse(const Lattice<iMatrix<iScalar<iScalar<iScalar<iScalar<vComplexD> > > >, N> > &Umu)
{
GridBase *grid=Umu.Grid();
auto lvol = grid->lSites();
Lattice<iMatrix<iScalar<iScalar<iScalar<iScalar<vComplexD> > > >, N > > ret(grid);
autoView(Umu_v,Umu,CpuRead);
autoView(ret_v,ret,CpuWrite);
thread_for(site,lvol,{
Eigen::MatrixXcd EigenU = Eigen::MatrixXcd::Zero(N,N);
Coordinate lcoor;
grid->LocalIndexToLocalCoor(site, lcoor);
iMatrix<iScalar<iScalar<iScalar<iScalar<ComplexD> > > >, N > Us;
iMatrix<iScalar<iScalar<iScalar<iScalar<ComplexD> > > >, N > Ui;
peekLocalSite(Us, Umu_v, lcoor);
for(int i=0;i<N;i++){
for(int j=0;j<N;j++){
EigenU(i,j) = Us(i,j)()()()();
}}
Eigen::MatrixXcd EigenUinv = EigenU.inverse();
for(int i=0;i<N;i++){
for(int j=0;j<N;j++){
Ui(i,j)()()()() = EigenUinv(i,j);
}}
pokeLocalSite(Ui,ret_v,lcoor);
});
return ret;
}
NAMESPACE_END(Grid);
#endif
+4
View File
@@ -2,3 +2,7 @@
int Grid::BinaryIO::latticeWriteMaxRetry = -1;
Grid::BinaryIO::IoPerf Grid::BinaryIO::lastPerf;
// Target size of a single contiguous file extent under BINARYIO_AGGREGATE.
// 4MB is around the knee for Lustre; exposed so it can be swept at runtime.
uint64_t Grid::BinaryIO::aggregateTargetBytes = 4*1024*1024;
+453 -12
View File
@@ -39,6 +39,7 @@
#endif
#include <arpa/inet.h>
#include <sys/stat.h>
#include <algorithm>
NAMESPACE_BEGIN(Grid);
@@ -87,6 +88,7 @@ class BinaryIO {
static IoPerf lastPerf;
static int latticeWriteMaxRetry;
static uint64_t aggregateTargetBytes;
/////////////////////////////////////////////////////////////////////////////
// more byte manipulation helpers
@@ -253,12 +255,392 @@ class BinaryIO {
// Read or Write distributed lexico array of ANY object to a specific location in file
//////////////////////////////////////////////////////////////////////////////////////
static const int BINARYIO_AGGREGATE = 0x20;
static const int BINARYIO_MASTER_APPEND = 0x10;
static const int BINARYIO_UNORDERED = 0x08;
static const int BINARYIO_LEXICOGRAPHIC = 0x04;
static const int BINARYIO_READ = 0x02;
static const int BINARYIO_WRITE = 0x01;
#ifdef USE_MPI_IO
/////////////////////////////////////////////////////////////////////////////
// Aggregation: self controlled transposition onto an I/O friendly layout.
//
// Under BINARYIO_LEXICOGRAPHIC the subarray file view handed to MPI-IO has
// contiguous runs of only lLattice[0]*sizeof(fobj) bytes -- a few KB for
// typical local volumes. Rather than rely on collective buffering to repair
// that, redistribute the payload ourselves so every rank owns a contiguous
// range of the global lexicographic site ordering, then issue large plain
// contiguous writes.
//
// "Un-splitting" the nunsplit fastest dimensions means the row of ranks
// sharing the remaining process coordinates collectively owns whole global
// hyperplanes. All data movement is then confined to that row communicator.
// Every rank still owns exactly lSites() sites afterwards, so the exchange is
// a pure permutation and needs no divisibility condition on the process grid.
/////////////////////////////////////////////////////////////////////////////
struct AggregationPlan {
int nunsplit{0}; // number of fastest dimensions un-split
int rowsize{0}; // ranks in the aggregation (row) communicator
int rowrank{0}; // our logical (lexicographic) index within the row
uint64_t lsites{0}; // sites per rank -- invariant under the permutation
uint64_t chunk{0}; // sites in one globally contiguous run owned by the row
std::unique_ptr<CartesianCommunicator> rowcomm;
// counts and displacements are indexed by rank within rowcomm
std::vector<int> sendcounts, senddispls, recvcounts, recvdispls;
std::vector<uint64_t> scatter; // recv slot -> slot in the aggregated buffer
std::vector<uint64_t> extentGsite; // global lex site index of extent start
std::vector<uint64_t> extentLocal; // offset of extent within aggregated buffer
std::vector<uint64_t> extentSites; // sites in this extent
};
static inline void BuildAggregationPlan(GridBase *grid,uint64_t fobjSize,AggregationPlan &p)
{
int ndim = grid->Dimensions();
Coordinate psizes = grid->ProcessorGrid();
Coordinate pcoor = grid->ThisProcessorCoor();
Coordinate gLattice= grid->GlobalDimensions();
Coordinate lLattice= grid->LocalDimensions();
Coordinate lstart = grid->LocalStarts();
uint64_t lsites = grid->lSites();
p.lsites = lsites;
//////////////////////////////////////////////////////////////////////////
// Un-splitting dims 0..k-1 gives the row a contiguous run of
// chunk(k) = prod_{d<k} gLattice[d] * lLattice[k]
// sites, and each rank writes extents of min(chunk,lsites). Take the
// smallest k that reaches the target so we disturb as few dimensions --
// and move as little data -- as possible.
//////////////////////////////////////////////////////////////////////////
int k = ndim-1;
for(int trial=1; trial<ndim; trial++){
uint64_t chunk = lLattice[trial];
for(int d=0; d<trial; d++) chunk *= gLattice[d];
if ( std::min(chunk,lsites)*fobjSize >= aggregateTargetBytes ) { k = trial; break; }
}
p.nunsplit = k;
//////////////////////////////////////////////////////////////////////////
// The box the row collectively owns, expressed in global coordinates.
// Restricting the global lexicographic order to this box preserves the
// ordering, so the row index below is monotone in the global index.
//////////////////////////////////////////////////////////////////////////
Coordinate B(ndim), S(ndim);
for(int d=0; d<ndim; d++){
if ( d<k ) { B[d] = gLattice[d]; S[d] = 0; }
else { B[d] = lLattice[d]; S[d] = lstart[d]; }
}
uint64_t chunk = lLattice[k];
for(int d=0; d<k; d++) chunk *= gLattice[d];
p.chunk = chunk;
//////////////////////////////////////////////////////////////////////////
// Row communicator: the ranks sharing the process coordinates of the slow
// (still split) dimensions. This is the sub-division the Cartesian
// communicator already performs for AllToAll(dim,...), widened from one
// dimension to the k fastest.
//////////////////////////////////////////////////////////////////////////
Coordinate row(ndim,1);
for(int d=0; d<k; d++) row[d] = psizes[d];
int srank;
p.rowcomm.reset(new CartesianCommunicator(row,*grid,srank));
p.rowsize = p.rowcomm->ProcessorCount();
//////////////////////////////////////////////////////////////////////////
// Our logical index in the row is the forward lexicographic index of the
// un-split process coordinates, so that increasing logical index means
// increasing global lexicographic position in the file. The communicator
// numbers its own ranks by the reversed (MPI) convention, so build the map
// between the two rather than assuming either.
//////////////////////////////////////////////////////////////////////////
int64_t logical=0, lstride=1;
for(int d=0; d<k; d++){ logical += pcoor[d]*lstride; lstride *= psizes[d]; }
GRID_ASSERT(lstride == (int64_t)p.rowsize);
p.rowrank = (int)logical;
std::vector<uint64_t> commOf(p.rowsize,0);
commOf[p.rowrank] = (uint64_t)p.rowcomm->ThisRank();
p.rowcomm->GlobalSumVector(&commOf[0],p.rowsize);
uint64_t mystart = (uint64_t)p.rowrank * lsites;
uint64_t myend = mystart + lsites;
Coordinate lcoor(ndim), bcoor(ndim), gcoor(ndim);
//////////////////////////////////////////////////////////////////////////
// Send side. Walking our local sites in local lexicographic order walks
// the row index monotonically, so the send buffer is iodata untouched and
// we need only the per destination counts.
//////////////////////////////////////////////////////////////////////////
std::vector<int> sendLogical(p.rowsize,0);
for(uint64_t L=0; L<lsites; L++){
Lexicographic::CoorFromIndex(lcoor,L,lLattice);
for(int d=0; d<ndim; d++) bcoor[d] = (d<k) ? (lstart[d]+lcoor[d]) : lcoor[d];
int64_t ri; Lexicographic::IndexFromCoor(bcoor,ri,B);
sendLogical[ ri/(int64_t)lsites ]++;
}
p.sendcounts.assign(p.rowsize,0);
p.senddispls.assign(p.rowsize,0);
{ int64_t disp=0;
for(int d=0; d<p.rowsize; d++){ // send buffer is in logical order
int c = (int)commOf[d];
p.sendcounts[c] = sendLogical[d];
p.senddispls[c] = (int)disp;
disp += sendLogical[d];
}
}
//////////////////////////////////////////////////////////////////////////
// Receive side. For each slot of our aggregated range work out which rank
// of the row owns it. Within one source the slots arrive in increasing row
// index order, which is the order the source sends them in.
//////////////////////////////////////////////////////////////////////////
std::vector<int> recvLogical(p.rowsize,0), recvDisplLogical(p.rowsize,0);
std::vector<int> source(lsites);
for(uint64_t pos=0; pos<lsites; pos++){
Lexicographic::CoorFromIndex(bcoor,(int64_t)(mystart+pos),B);
int64_t j=0, jstride=1;
for(int d=0; d<k; d++){ j += (bcoor[d]/lLattice[d])*jstride; jstride *= psizes[d]; }
source[pos] = (int)j;
recvLogical[j]++;
}
p.recvcounts.assign(p.rowsize,0);
p.recvdispls.assign(p.rowsize,0);
{ int64_t disp=0;
for(int s=0; s<p.rowsize; s++){ // recv buffer is in logical order
int c = (int)commOf[s];
recvDisplLogical[s] = (int)disp;
p.recvcounts[c] = recvLogical[s];
p.recvdispls[c] = (int)disp;
disp += recvLogical[s];
}
}
p.scatter.resize(lsites);
{
std::vector<int> fill(p.rowsize,0);
for(uint64_t pos=0; pos<lsites; pos++){
int j = source[pos];
p.scatter[ recvDisplLogical[j] + fill[j]++ ] = pos;
}
}
//////////////////////////////////////////////////////////////////////////
// The two sides are derived independently; make them check each other.
//////////////////////////////////////////////////////////////////////////
{
std::vector<uint64_t> sendc(p.rowsize),recvc(p.rowsize);
for(int c=0;c<p.rowsize;c++) sendc[c]=(uint64_t)p.sendcounts[c];
p.rowcomm->AllToAll(&sendc[0],&recvc[0],1,sizeof(uint64_t));
for(int c=0;c<p.rowsize;c++) GRID_ASSERT((int)recvc[c]==p.recvcounts[c]);
}
//////////////////////////////////////////////////////////////////////////
// Decompose our range into globally contiguous file extents.
//////////////////////////////////////////////////////////////////////////
for(uint64_t c = mystart/chunk; c <= (myend-1)/chunk; c++){
uint64_t lo = std::max(mystart, c*chunk);
uint64_t hi = std::min(myend, (c+1)*chunk);
Lexicographic::CoorFromIndex(bcoor,(int64_t)(c*chunk),B);
for(int d=0;d<ndim;d++) gcoor[d] = (d<k) ? bcoor[d] : bcoor[d]+S[d];
int64_t gbase; Lexicographic::IndexFromCoor(gcoor,gbase,gLattice);
p.extentGsite.push_back( (uint64_t)gbase + (lo - c*chunk) );
p.extentLocal.push_back( lo - mystart );
p.extentSites.push_back( hi - lo );
}
}
static inline void ReportAggregationPlan(GridBase *grid,const AggregationPlan &p,uint64_t fobjSize,const char *what)
{
if ( !grid->IsBoss() ) return;
std::cout << GridLogMessage << "IOobject: aggregate " << what
<< " un-splitting " << p.nunsplit << " fastest dimensions, row of "
<< p.rowsize << " ranks" << std::endl;
std::cout << GridLogMessage << "IOobject: aggregate " << p.extentSites.size()
<< " extent(s)/rank, first " << p.extentSites[0]*fobjSize/1024./1024. << " MB"
<< " (target " << aggregateTargetBytes/1024./1024. << " MB)" << std::endl;
std::cout << GridLogMessage << "IOobject: aggregate buffer overhead "
<< p.lsites*fobjSize/1024./1024. << " MB/rank" << std::endl;
}
////////////////////////////////////////////////////////////////////////////
// Stage timings. The interesting quantity is the slowest rank, since every
// stage is followed sooner or later by a synchronisation, so reduce with
// GlobalMax rather than reporting whatever the boss happened to see.
////////////////////////////////////////////////////////////////////////////
static inline void ReportStages(GridBase *grid,const char *what,
const std::vector<const char *> &names,
std::vector<RealD> &useconds)
{
GRID_ASSERT(names.size()==useconds.size());
for(uint64_t i=0;i<useconds.size();i++) grid->GlobalMax(useconds[i]);
if ( grid->IsBoss() ) {
std::cout << GridLogMessage << "IOobject: aggregate " << what << " stages (max over ranks, s):";
for(uint64_t i=0;i<names.size();i++)
std::cout << " " << names[i] << " " << useconds[i]/1.0e6;
std::cout << std::endl;
}
}
template<class fobj>
static inline void AggregateExchange(GridBase *grid,AggregationPlan &p,std::vector<fobj> &iodata,
std::vector<fobj> &aggregated,int forward)
{
uint64_t lsites = p.lsites;
GridStopWatch talloc,tperm,tcomm;
talloc.Start();
std::vector<fobj> tmp(lsites);
talloc.Stop();
if ( forward ) { // iodata (local order) -> aggregated (lexicographic order)
tcomm.Start();
p.rowcomm->AllToAllV(&iodata[0],p.sendcounts,p.senddispls,
&tmp[0], p.recvcounts,p.recvdispls,sizeof(fobj));
tcomm.Stop();
tperm.Start();
thread_for(s,lsites,{ aggregated[p.scatter[s]] = tmp[s]; });
tperm.Stop();
} else { // aggregated -> iodata, the exact mirror
tperm.Start();
thread_for(s,lsites,{ tmp[s] = aggregated[p.scatter[s]]; });
tperm.Stop();
tcomm.Start();
p.rowcomm->AllToAllV(&tmp[0], p.recvcounts,p.recvdispls,
&iodata[0],p.sendcounts,p.senddispls,sizeof(fobj));
tcomm.Stop();
}
std::vector<RealD> us = { (RealD)talloc.useconds(), (RealD)tperm.useconds(), (RealD)tcomm.useconds() };
ReportStages(grid,forward?"exchange (write)":"exchange (read)",
{"alloc","permute","alltoallv"},us);
}
template<class fobj>
static inline void AggregateWrite(GridBase *grid,AggregationPlan &p,std::vector<fobj> &aggregated,
std::string file,uint64_t offset)
{
//////////////////////////////////////////////////////////////////////////
// All ranks write concurrently into a shared file, so the file must exist
// before any of them open it for update, but it does NOT have to be the
// right length first: the extents tile the record exactly, so writing them
// extends a short file to precisely offset+payload.
//
// Records are created in sequence, so this payload ends the file: the
// length must end up precisely offset+payload. Anything beyond is left
// over from whatever the file previously held and must not survive -- a
// shorter new record written over a longer old one would otherwise leave
// a trailing fragment of the previous contents masquerading as data.
// That is the only case needing a truncate, so stat first and truncate
// afterwards only when the size actually came out wrong. Measured on
// Frontier, an unconditional truncate up front cost 0.22 to 5.4 s per
// record -- 15 to 25% of a 19 GB write and 100% of a small one -- while
// create, open and close together cost a few milliseconds. It is per
// record, so multi record files do not amortise it away.
//
// ::truncate is used because the C++ standard library cannot express this.
// std::filebuf has no length operation at all; ios::trunc only truncates to
// zero; seeking past the end and writing a byte can grow a file but never
// shrink one; and there is no portable way to recover a descriptor from a
// stream in order to call ftruncate. C++17 does finally offer
// std::filesystem::resize_file, but that would be Grid's first <filesystem>
// dependency and needs -lstdc++fs on the older toolchains still in use.
//////////////////////////////////////////////////////////////////////////
GridStopWatch tcreate,ttrunc,tbar,topen,twrite,tclose,tskew;
uint64_t need = offset + (uint64_t)grid->_gsites*sizeof(fobj);
tcreate.Start();
if ( grid->IsBoss() ) {
// opening for update needs the file to exist; create one only if not
std::fstream probe(file,std::ios::binary|std::ios::out|std::ios::in);
if ( !probe.is_open() ) {
std::ofstream create(file,std::ios::binary|std::ios::out);
create.close();
}
}
tcreate.Stop();
tbar.Start();
grid->Barrier();
tbar.Stop();
std::ofstream fout;
fout.exceptions( std::fstream::failbit | std::fstream::badbit );
try {
topen.Start();
fout.open(file,std::ios::binary|std::ios::out|std::ios::in);
topen.Stop();
twrite.Start();
for(uint64_t e=0;e<p.extentSites.size();e++){
fout.seekp(offset + p.extentGsite[e]*sizeof(fobj));
fout.write((char *)&aggregated[p.extentLocal[e]],p.extentSites[e]*sizeof(fobj));
}
twrite.Stop();
tclose.Start();
fout.close(); // flushes the stream buffer; does not force writeback
tclose.Stop();
} catch (const std::fstream::failure& exc) {
std::cout << GridLogError << "Error in aggregate write to " << file << std::endl;
std::cout << GridLogError << "Exception description: " << exc.what() << std::endl;
GridAbort();
}
////////////////////////////////////////////////////////////////////////
// Timed apart from the truncate that follows it. seek+write above is the
// slowest rank; this barrier is what the fastest rank then waits, so the
// pair separates the write cost from the spread across ranks. Folding it
// into the truncate makes a millisecond stat look like a second.
////////////////////////////////////////////////////////////////////////
tskew.Start();
grid->Barrier(); // every extent must be on its way first
tskew.Stop();
ttrunc.Start();
if ( grid->IsBoss() ) {
struct stat sb;
int ierr = ::stat(file.c_str(),&sb);
GRID_ASSERT(ierr==0);
if ( (uint64_t)sb.st_size != need ) { // only when a longer record preceded us
ierr = ::truncate(file.c_str(),(off_t)need);
GRID_ASSERT(ierr==0);
}
}
grid->Barrier();
ttrunc.Stop();
std::vector<RealD> us = { (RealD)tcreate.useconds(), (RealD)tbar.useconds(),
(RealD)topen.useconds(), (RealD)twrite.useconds(),
(RealD)tclose.useconds(), (RealD)tskew.useconds(),
(RealD)ttrunc.useconds() };
ReportStages(grid,"write",{"create","barrier","open","seek+write","close","skew","stat+truncate"},us);
}
template<class fobj>
static inline void AggregateRead(GridBase *grid,AggregationPlan &p,std::vector<fobj> &aggregated,
std::string file,uint64_t offset)
{
GridStopWatch topen,tread,tclose;
std::ifstream fin;
topen.Start();
fin.open(file,std::ios::binary|std::ios::in);
topen.Stop();
tread.Start();
for(uint64_t e=0;e<p.extentSites.size();e++){
fin.seekg(offset + p.extentGsite[e]*sizeof(fobj));
fin.read((char *)&aggregated[p.extentLocal[e]],p.extentSites[e]*sizeof(fobj));
GRID_ASSERT(fin.fail()==0);
}
tread.Stop();
tclose.Start();
fin.close();
tclose.Stop();
std::vector<RealD> us = { (RealD)topen.useconds(), (RealD)tread.useconds(), (RealD)tclose.useconds() };
ReportStages(grid,"read",{"open","seek+read","close"},us);
}
#endif
template<class word,class fobj>
static inline void IOobject(word w,
GridBase *grid,
@@ -302,6 +684,18 @@ class BinaryIO {
lStart[d] = 0;
}
//////////////////////////////////////////////////////////////////////////////
// Aggregate the lexicographic layout onto contiguous per rank extents
// ourselves rather than leaving it to MPI-IO collective buffering
//////////////////////////////////////////////////////////////////////////////
int aggregate = (control & BINARYIO_AGGREGATE)
&& (control & BINARYIO_LEXICOGRAPHIC)
&& !(control & BINARYIO_MASTER_APPEND)
&& (nrank > 1);
#ifndef USE_MPI_IO
GRID_ASSERT(aggregate==0); // BINARYIO_AGGREGATE requires MPI
#endif
#ifdef USE_MPI_IO
std::vector<int> distribs(ndim,MPI_DISTRIBUTE_BLOCK);
std::vector<int> dargs (ndim,MPI_DISTRIBUTE_DFLT_DARG);
@@ -329,6 +723,8 @@ class BinaryIO {
ierr = MPI_Type_contiguous(numword,mpiword,&mpiObject); GRID_ASSERT(ierr==0);
ierr = MPI_Type_commit(&mpiObject);
// The subarray view is what aggregation exists to avoid; do not build it
if ( !aggregate ) {
//////////////////////////////////////////////////////////////////////////////
// File global array data type
//////////////////////////////////////////////////////////////////////////////
@@ -340,6 +736,7 @@ class BinaryIO {
//////////////////////////////////////////////////////////////////////////////
ierr=MPI_Type_create_subarray(ndim,&lLattice[0],&lLattice[0],&lStart[0],MPI_ORDER_FORTRAN, mpiObject,&localArray); GRID_ASSERT(ierr==0);
ierr=MPI_Type_commit(&localArray); GRID_ASSERT(ierr==0);
}
#endif
//////////////////////////////////////////////////////////////////////////////
@@ -358,7 +755,19 @@ class BinaryIO {
timer.Start();
if ( (control & BINARYIO_LEXICOGRAPHIC) && (nrank > 1) ) {
if ( aggregate ) {
#ifdef USE_MPI_IO
std::cout<< GridLogMessage<<"IOobject: aggregate read I/O "<< file<< std::endl;
AggregationPlan plan;
BuildAggregationPlan(grid,sizeof(fobj),plan);
ReportAggregationPlan(grid,plan,sizeof(fobj),"read");
std::vector<fobj> aggregated(lsites);
AggregateRead(grid,plan,aggregated,file,offset);
AggregateExchange(grid,plan,iodata,aggregated,0);
#else
GRID_ASSERT(0);
#endif
} else if ( (control & BINARYIO_LEXICOGRAPHIC) && (nrank > 1) ) {
#ifdef USE_MPI_IO
std::cout<< GridLogMessage<<"IOobject: MPI read I/O "<< file<< std::endl;
ierr=MPI_File_open(grid->communicator,(char *) file.c_str(), MPI_MODE_RDONLY, MPI_INFO_NULL, &fh); GRID_ASSERT(ierr==0);
@@ -416,7 +825,25 @@ class BinaryIO {
grid->Barrier();
timer.Start();
if ( (control & BINARYIO_LEXICOGRAPHIC) && (nrank > 1) ) {
if ( aggregate ) {
#ifdef USE_MPI_IO
std::cout << GridLogMessage <<"IOobject: aggregate write I/O " << file << std::endl;
AggregationPlan plan;
BuildAggregationPlan(grid,sizeof(fobj),plan);
ReportAggregationPlan(grid,plan,sizeof(fobj),"write");
std::vector<fobj> aggregated(lsites);
AggregateExchange(grid,plan,iodata,aggregated,1);
AggregateWrite(grid,plan,aggregated,file,offset);
////////////////////////////////////////////////////////////////////////
// Not every rank ends at the end of the payload, so the position can
// not be recovered from a file handle. Callers (Lime record chaining)
// rely on this being the first byte past the record.
////////////////////////////////////////////////////////////////////////
offset = offset + (uint64_t)grid->_gsites*sizeof(fobj);
#else
GRID_ASSERT(0);
#endif
} else if ( (control & BINARYIO_LEXICOGRAPHIC) && (nrank > 1) ) {
#ifdef USE_MPI_IO
std::cout << GridLogMessage <<"IOobject: MPI write I/O " << file << std::endl;
ierr = MPI_File_open(grid->communicator, (char *)file.c_str(), MPI_MODE_RDWR | MPI_MODE_CREATE, MPI_INFO_NULL, &fh);
@@ -461,12 +888,26 @@ class BinaryIO {
std::ofstream fout;
fout.exceptions ( std::fstream::failbit | std::fstream::badbit );
////////////////////////////////////////////////////////////////////
// Grid's model is that the boss rank performs the metadata
// operations and every other rank only seeks and writes into a file
// that already exists. Opening with ios::out on all ranks broke that:
// it is O_TRUNC, so a rank opening late truncated the file back to
// zero after an earlier rank had written its segment, leaving a hole
// in its place. The barriers around this block are outside it and do
// not order the opens against the writes. Let the boss create and
// empty the file, then everyone opens for update only. Same resulting
// length, one metadata operation instead of one per rank, no race.
////////////////////////////////////////////////////////////////////
if ( !offset && grid->IsBoss() ) { // offset zero: this record starts the file
std::ofstream create(file,std::ios::binary|std::ios::out);
create.close();
}
grid->Barrier();
try {
if (offset) { // Must already exist and contain data
fout.open(file,std::ios::binary|std::ios::out|std::ios::in);
} else { // Allow create
fout.open(file,std::ios::binary|std::ios::out);
}
fout.open(file,std::ios::binary|std::ios::out|std::ios::in);
} catch (const std::fstream::failure& exc) {
std::cout << GridLogError << "Error in opening the file " << file << " for output" <<std::endl;
std::cout << GridLogError << "Exception description: " << exc.what() << std::endl;
@@ -477,7 +918,7 @@ class BinaryIO {
exit(1);
#endif
}
if ( control & BINARYIO_MASTER_APPEND ) {
try {
fout.seekp(0,fout.end);
@@ -548,7 +989,7 @@ class BinaryIO {
uint32_t &nersc_csum,
uint32_t &scidac_csuma,
uint32_t &scidac_csumb,
int control=BINARYIO_LEXICOGRAPHIC
int control=BINARYIO_LEXICOGRAPHIC|BINARYIO_AGGREGATE
)
{
typedef typename vobj::scalar_object sobj;
@@ -587,7 +1028,7 @@ class BinaryIO {
uint32_t &nersc_csum,
uint32_t &scidac_csuma,
uint32_t &scidac_csumb,
int control=BINARYIO_LEXICOGRAPHIC)
int control=BINARYIO_LEXICOGRAPHIC|BINARYIO_AGGREGATE)
{
typedef typename vobj::scalar_object sobj;
typedef typename vobj::Realified::scalar_type word; word w=0;
@@ -674,7 +1115,7 @@ class BinaryIO {
std::cout << GridLogMessage << "RNG read I/O on file " << file << std::endl;
std::vector<RNGstate> iodata(lsites);
IOobject(w,grid,iodata,file,offset,format,BINARYIO_READ|BINARYIO_LEXICOGRAPHIC,
IOobject(w,grid,iodata,file,offset,format,BINARYIO_READ|BINARYIO_LEXICOGRAPHIC|BINARYIO_AGGREGATE,
nersc_csum,scidac_csuma,scidac_csumb);
timer.Start();
@@ -753,7 +1194,7 @@ class BinaryIO {
});
timer.Stop();
IOobject(w,grid,iodata,file,offset,format,BINARYIO_WRITE|BINARYIO_LEXICOGRAPHIC,
IOobject(w,grid,iodata,file,offset,format,BINARYIO_WRITE|BINARYIO_LEXICOGRAPHIC|BINARYIO_AGGREGATE,
nersc_csum,scidac_csuma,scidac_csumb);
iodata.resize(1);
{
+4 -4
View File
@@ -212,7 +212,7 @@ class GridLimeReader : public BinaryIO {
// Read a generic lattice field and verify checksum
////////////////////////////////////////////
template<class vobj>
void readLimeLatticeBinaryObject(Lattice<vobj> &field,std::string record_name,int control=BINARYIO_LEXICOGRAPHIC)
void readLimeLatticeBinaryObject(Lattice<vobj> &field,std::string record_name,int control=BINARYIO_LEXICOGRAPHIC|BINARYIO_AGGREGATE)
{
typedef typename vobj::scalar_object sobj;
scidacChecksum scidacChecksum_;
@@ -414,7 +414,7 @@ class GridLimeWriter : public BinaryIO
// in communicator used by the field.Grid()
////////////////////////////////////////////////////
template<class vobj>
void writeLimeLatticeBinaryObject(Lattice<vobj> &field,std::string record_name,int control=BINARYIO_LEXICOGRAPHIC)
void writeLimeLatticeBinaryObject(Lattice<vobj> &field,std::string record_name,int control=BINARYIO_LEXICOGRAPHIC|BINARYIO_AGGREGATE)
{
////////////////////////////////////////////////////////////////////
// NB: FILE and iostream are jointly writing disjoint sequences in the
@@ -519,7 +519,7 @@ class ScidacWriter : public GridLimeWriter {
template <class vobj, class userRecord>
void writeScidacFieldRecord(Lattice<vobj> &field,userRecord _userRecord,
const unsigned int recordScientificPrec = 0,
int control=BINARYIO_LEXICOGRAPHIC)
int control=BINARYIO_LEXICOGRAPHIC|BINARYIO_AGGREGATE)
{
GridBase * grid = field.Grid();
@@ -561,7 +561,7 @@ class ScidacReader : public GridLimeReader {
////////////////////////////////////////////////
template <class vobj, class userRecord>
void readScidacFieldRecord(Lattice<vobj> &field,userRecord &_userRecord,
int control=BINARYIO_LEXICOGRAPHIC)
int control=BINARYIO_LEXICOGRAPHIC|BINARYIO_AGGREGATE)
{
typedef typename vobj::scalar_object sobj;
GridBase * grid = field.Grid();
+1 -2
View File
@@ -93,8 +93,7 @@ inline uint64_t cyclecount(void){
}
#elif defined __x86_64__
inline uint64_t cyclecount(void){
uint64_t ret = __rdtsc();
return (uint64_t)ret;
return (uint64_t)0;
}
#else
+18
View File
@@ -596,16 +596,32 @@ template<int Index,class vobj> inline vobj transposeColour(const vobj &lhs){
//////////////////////////////////////////
// Trace lattice and non-lattice
//////////////////////////////////////////
#define GRID_UNOP(name) name
#define GRID_DEF_UNOP(op, name) \
template <typename T1, typename std::enable_if<is_lattice<T1>::value||is_lattice_expr<T1>::value,T1>::type * = nullptr> \
inline auto op(const T1 &arg) ->decltype(LatticeUnaryExpression<GRID_UNOP(name),T1>(GRID_UNOP(name)(), arg)) \
{ \
return LatticeUnaryExpression<GRID_UNOP(name),T1>(GRID_UNOP(name)(), arg); \
}
template<int Index,class vobj>
inline auto traceSpin(const Lattice<vobj> &lhs) -> Lattice<decltype(traceIndex<SpinIndex>(vobj()))>
{
return traceIndex<SpinIndex>(lhs);
}
GridUnopClass(UnaryTraceSpin, traceIndex<SpinIndex>(a));
GRID_DEF_UNOP(traceSpin, UnaryTraceSpin);
template<int Index,class vobj>
inline auto traceColour(const Lattice<vobj> &lhs) -> Lattice<decltype(traceIndex<ColourIndex>(vobj()))>
{
return traceIndex<ColourIndex>(lhs);
}
GridUnopClass(UnaryTraceColour, traceIndex<ColourIndex>(a));
GRID_DEF_UNOP(traceColour, UnaryTraceColour);
template<int Index,class vobj>
inline auto traceSpin(const vobj &lhs) -> Lattice<decltype(traceIndex<SpinIndex>(lhs))>
{
@@ -617,6 +633,8 @@ inline auto traceColour(const vobj &lhs) -> Lattice<decltype(traceIndex<ColourIn
return traceIndex<ColourIndex>(lhs);
}
#undef GRID_UNOP
#undef GRID_DEF_UNOP
//////////////////////////////////////////
// Current types
//////////////////////////////////////////
+12
View File
@@ -103,6 +103,18 @@ class PolyakovMod: public ObservableModule<PolyakovLogger<Impl>, NoParameters>{
PolyakovMod(): ObsBase(NoParameters()){}
};
template < class Impl >
class SpatialPolyakovMod: public ObservableModule<SpatialPolyakovLogger<Impl>, NoParameters>{
typedef ObservableModule<SpatialPolyakovLogger<Impl>, NoParameters> ObsBase;
using ObsBase::ObsBase; // for constructors
// acquire resource
virtual void initialize(){
this->ObservablePtr.reset(new SpatialPolyakovLogger<Impl>());
}
public:
SpatialPolyakovMod(): ObsBase(NoParameters()){}
};
template < class Impl >
class TopologicalChargeMod: public ObservableModule<TopologicalCharge<Impl>, TopologyObsParameters>{
+42 -2
View File
@@ -2,11 +2,12 @@
Grid physics library, www.github.com/paboyle/Grid
Source file: ./lib/qcd/modules/polyakov_line.h
Source file: ./Grid/qcd/observables/polyakov_loop.h
Copyright (C) 2017
Copyright (C) 2025
Author: David Preti <david.preti@csic.es>
Author: Alexis Verney-Provatas <2414441@swansea.ac.uk>
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
@@ -60,4 +61,43 @@ class PolyakovLogger : public HmcObservable<typename Impl::Field> {
}
};
template <class Impl>
class SpatialPolyakovLogger : public HmcObservable<typename Impl::Field> {
public:
// here forces the Impl to be of gauge fields
// if not the compiler will complain
INHERIT_GIMPL_TYPES(Impl);
// necessary for HmcObservable compatibility
typedef typename Impl::Field Field;
void TrajectoryComplete(int traj,
Field &U,
GridSerialRNG &sRNG,
GridParallelRNG &pRNG) {
// Save current numerical output precision
int def_prec = std::cout.precision();
// Assume that the dimensions are D=3+1
int Ndim = 3;
ComplexD polyakov;
// Iterate over the spatial directions and print the average spatial polyakov loop
// over them
for (int idx=0; idx<Ndim; idx++) {
polyakov = WilsonLoops<Impl>::avgPolyakovLoop(U, idx);
std::cout << GridLogMessage
<< std::setprecision(std::numeric_limits<Real>::digits10 + 1)
<< "Polyakov Loop in the " << idx << " spatial direction : [ " << traj << " ] "<< polyakov << std::endl;
}
// Return to original output precision
std::cout.precision(def_prec);
}
};
NAMESPACE_END(Grid);
+3 -3
View File
@@ -254,9 +254,9 @@ static void testGenerators(GroupName::Sp) {
}
}
template <int N>
static Lattice<iScalar<iScalar<iMatrix<vComplexD, N> > > >
ProjectOnGeneralGroup(const Lattice<iScalar<iScalar<iMatrix<vComplexD, N> > > > &Umu, GroupName::Sp) {
template <class vtype, int N>
static Lattice<iScalar<iScalar<iMatrix<vtype, N> > > >
ProjectOnGeneralGroup(const Lattice<iScalar<iScalar<iMatrix<vtype, N> > > > &Umu, GroupName::Sp) {
return ProjectOnSpGroup(Umu);
}
+26 -8
View File
@@ -177,25 +177,43 @@ public:
}
//////////////////////////////////////////////////
// average over all x,y,z the temporal loop
// average Polyakov loop in mu direction over all directions != mu
//////////////////////////////////////////////////
static ComplexD avgPolyakovLoop(const GaugeField &Umu) { //assume Nd=4
GaugeMat Ut(Umu.Grid()), P(Umu.Grid());
static ComplexD avgPolyakovLoop(const GaugeField &Umu, const int mu) { //assume Nd=4
// Protect against bad value of mu [0, 3]
if ((mu < 0 ) || (mu > 3)) {
std::cout << GridLogError << "Index is not an integer inclusively between 0 and 3." << std::endl;
exit(1);
}
// U_loop is U_{mu}
GaugeMat U_loop(Umu.Grid()), P(Umu.Grid());
ComplexD out;
int T = Umu.Grid()->GlobalDimensions()[3];
int X = Umu.Grid()->GlobalDimensions()[0];
int Y = Umu.Grid()->GlobalDimensions()[1];
int Z = Umu.Grid()->GlobalDimensions()[2];
Ut = peekLorentz(Umu,3); //Select temporal direction
P = Ut;
for (int t=1;t<T;t++){
P = Gimpl::CovShiftForward(Ut,3,P);
// Number of sites in mu direction
int N_mu = Umu.Grid()->GlobalDimensions()[mu];
U_loop = peekLorentz(Umu, mu); //Select direction
P = U_loop;
for (int t=1;t<N_mu;t++){
P = Gimpl::CovShiftForward(U_loop,mu,P);
}
RealD norm = 1.0/(Nc*X*Y*Z*T);
out = sum(trace(P))*norm;
return out;
}
}
/////////////////////////////////////////////////
// overload for temporal Polyakov loop
/////////////////////////////////////////////////
static ComplexD avgPolyakovLoop(const GaugeField &Umu) {
return avgPolyakovLoop(Umu, 3);
}
//////////////////////////////////////////////////
// average over traced single links
+8
View File
@@ -113,6 +113,14 @@ accelerator_inline RealD adj(const RealD & r){ return r; }
accelerator_inline ComplexD adj(const ComplexD& r){ return(conjugate(r)); }
accelerator_inline ComplexF adj(const ComplexF& r ){ return(conjugate(r)); }
#if defined(GRID_CUDA) || defined(GRID_HIP)
//Provide for convenience
inline std::complex<double> conjugate(const std::complex<double>& r){ return(conj(r)); }
inline std::complex<float> conjugate(const std::complex<float>& r) { return(conj(r)); }
inline std::complex<double> adj(const std::complex<double>& r) { return(conj(r)); }
inline std::complex<float> adj(const std::complex<float>& r) { return(conj(r)); }
#endif
accelerator_inline RealF real(const RealF & r){ return r; }
accelerator_inline RealD real(const RealD & r){ return r; }
accelerator_inline RealF real(const ComplexF & r){ return r.real(); }
+1 -1
View File
@@ -3,7 +3,7 @@
NAMESPACE_BEGIN(Grid);
int world_rank; // Use to control world rank for print guarding
int acceleratorAbortOnGpuError=1;
uint32_t accelerator_threads=2;
uint32_t accelerator_threads=8;
uint32_t acceleratorThreads(void) {return accelerator_threads;};
void acceleratorThreads(uint32_t t) {accelerator_threads = t;};
+16 -16
View File
@@ -96,7 +96,9 @@ void acceleratorInit(void);
#ifdef GRID_CUDA
NAMESPACE_END(Grid);
#include <cuda.h>
NAMESPACE_BEGIN(Grid);
#ifdef __CUDA_ARCH__
#define GRID_SIMT
@@ -432,22 +434,20 @@ accelerator_inline int acceleratorSIMTlane(int Nsimd) {
#define accelerator_for2dNB( iter1, num1, iter2, num2, nsimd, ... ) \
{ \
typedef uint64_t Iterator; \
auto lambda = [=] accelerator \
(Iterator iter1,Iterator iter2,Iterator lane ) mutable { \
{ __VA_ARGS__;} \
}; \
int nt=acceleratorThreads(); \
dim3 hip_threads(nsimd, nt, 1); \
dim3 hip_blocks ((num1+nt-1)/nt,num2,1); \
if(hip_threads.x * hip_threads.y * hip_threads.z <= 64){ \
hipLaunchKernelGGL(LambdaApply64,hip_blocks,hip_threads, \
0,computeStream, \
num1,num2,nsimd, lambda); \
} else { \
hipLaunchKernelGGL(LambdaApply,hip_blocks,hip_threads, \
0,computeStream, \
num1,num2,nsimd, lambda); \
if (num1*num2) { \
typedef uint64_t Iterator; \
auto lambda = [=] accelerator \
(Iterator iter1,Iterator iter2,Iterator lane ) mutable { \
{ __VA_ARGS__;} \
}; \
int nt=acceleratorThreads(); \
dim3 hip_threads(nsimd, nt, 1); \
dim3 hip_blocks ((num1+nt-1)/nt,num2,1); \
if(hip_threads.x * hip_threads.y * hip_threads.z <= 64){ \
LambdaApply64<<<hip_blocks,hip_threads,0,computeStream>>>(num1,num2,nsimd,lambda); \
} else { \
LambdaApply<<<hip_blocks,hip_threads,0,computeStream>>>(num1,num2,nsimd,lambda); \
} \
} \
}
+6 -1
View File
@@ -24,7 +24,11 @@ See the full license in the file "LICENSE" in the top level distribution
directory
*************************************************************************************/
/* END LEGAL */
#include <Grid/Grid.h>
#include "disable_examples_without_instantiations.h"
#ifdef ENABLE_FERMION_INSTANTIATIONS
#include<Grid/Grid.h>
#if Nc == 3
#include <Grid/qcd/smearing/GaugeConfigurationMasked.h>
@@ -230,3 +234,4 @@ int main(int argc, char **argv)
#endif
} // main
#endif
+6 -3
View File
@@ -25,7 +25,11 @@ directory
*************************************************************************************/
/* END LEGAL */
#include <Grid/Grid.h>
#include "disable_examples_without_instantiations.h"
#ifdef ENABLE_FERMION_INSTANTIATIONS
#include<Grid/Grid.h>
#if Nc == 3
#include <Grid/qcd/smearing/GaugeConfigurationMasked.h>
@@ -231,5 +235,4 @@ int main(int argc, char **argv)
#endif
} // main
#endif
+6 -3
View File
@@ -24,7 +24,11 @@ See the full license in the file "LICENSE" in the top level distribution
directory
*************************************************************************************/
/* END LEGAL */
#include <Grid/Grid.h>
#include "disable_examples_without_instantiations.h"
#ifdef ENABLE_FERMION_INSTANTIATIONS
#include<Grid/Grid.h>
#if Nc == 3
#include <Grid/qcd/smearing/GaugeConfigurationMasked.h>
@@ -230,5 +234,4 @@ int main(int argc, char **argv)
#endif
} // main
#endif
+6 -3
View File
@@ -27,7 +27,11 @@ See the full license in the file "LICENSE" in the top level distribution
directory
*************************************************************************************/
/* END LEGAL */
#include <Grid/Grid.h>
#include "disable_examples_without_instantiations.h"
#ifdef ENABLE_FERMION_INSTANTIATIONS
#include<Grid/Grid.h>
int main(int argc, char **argv) {
using namespace Grid;
@@ -195,5 +199,4 @@ int main(int argc, char **argv) {
Grid_finalize();
} // main
#endif
+6 -3
View File
@@ -28,7 +28,11 @@ See the full license in the file "LICENSE" in the top level distribution
directory
*************************************************************************************/
/* END LEGAL */
#include <Grid/Grid.h>
#include "disable_examples_without_instantiations.h"
#ifdef ENABLE_FERMION_INSTANTIATIONS
#include<Grid/Grid.h>
#ifdef GRID_DEFAULT_PRECISION_DOUBLE
#define MIXED_PRECISION
@@ -449,5 +453,4 @@ int main(int argc, char **argv) {
Grid_finalize();
} // main
#endif
+6 -3
View File
@@ -28,7 +28,11 @@ See the full license in the file "LICENSE" in the top level distribution
directory
*************************************************************************************/
/* END LEGAL */
#include <Grid/Grid.h>
#include "disable_examples_without_instantiations.h"
#ifdef ENABLE_FERMION_INSTANTIATIONS
#include<Grid/Grid.h>
#ifdef GRID_DEFAULT_PRECISION_DOUBLE
#define MIXED_PRECISION
@@ -442,5 +446,4 @@ int main(int argc, char **argv) {
Grid_finalize();
} // main
#endif
+7 -1
View File
@@ -28,7 +28,11 @@ See the full license in the file "LICENSE" in the top level distribution
directory
*************************************************************************************/
/* END LEGAL */
#include <Grid/Grid.h>
#include "disable_examples_without_instantiations.h"
#ifdef ENABLE_FERMION_INSTANTIATIONS
#include<Grid/Grid.h>
using namespace Grid;
@@ -918,3 +922,5 @@ int main(int argc, char **argv) {
return 0;
#endif
} // main
#endif
+7 -1
View File
@@ -28,7 +28,11 @@ See the full license in the file "LICENSE" in the top level distribution
directory
*************************************************************************************/
/* END LEGAL */
#include <Grid/Grid.h>
#include "disable_examples_without_instantiations.h"
#ifdef ENABLE_FERMION_INSTANTIATIONS
#include<Grid/Grid.h>
using namespace Grid;
@@ -873,3 +877,5 @@ int main(int argc, char **argv) {
return 0;
#endif
} // main
#endif
+6 -3
View File
@@ -27,7 +27,11 @@ See the full license in the file "LICENSE" in the top level distribution
directory
*************************************************************************************/
/* END LEGAL */
#include <Grid/Grid.h>
#include "disable_examples_without_instantiations.h"
#ifdef ENABLE_FERMION_INSTANTIATIONS
#include<Grid/Grid.h>
int main(int argc, char **argv) {
using namespace Grid;
@@ -193,5 +197,4 @@ int main(int argc, char **argv) {
Grid_finalize();
} // main
#endif
+6 -3
View File
@@ -27,7 +27,11 @@ See the full license in the file "LICENSE" in the top level distribution
directory
*************************************************************************************/
/* END LEGAL */
#include <Grid/Grid.h>
#include "disable_examples_without_instantiations.h"
#ifdef ENABLE_FERMION_INSTANTIATIONS
#include<Grid/Grid.h>
NAMESPACE_BEGIN(Grid);
@@ -512,5 +516,4 @@ int main(int argc, char **argv) {
Grid_finalize();
} // main
#endif
+6 -3
View File
@@ -27,7 +27,11 @@ See the full license in the file "LICENSE" in the top level distribution
directory
*************************************************************************************/
/* END LEGAL */
#include <Grid/Grid.h>
#include "disable_examples_without_instantiations.h"
#ifdef ENABLE_FERMION_INSTANTIATIONS
#include<Grid/Grid.h>
int main(int argc, char **argv) {
using namespace Grid;
@@ -345,5 +349,4 @@ int main(int argc, char **argv) {
Grid_finalize();
} // main
#endif
+6 -3
View File
@@ -27,7 +27,11 @@ See the full license in the file "LICENSE" in the top level distribution
directory
*************************************************************************************/
/* END LEGAL */
#include <Grid/Grid.h>
#include "disable_examples_without_instantiations.h"
#ifdef ENABLE_FERMION_INSTANTIATIONS
#include<Grid/Grid.h>
NAMESPACE_BEGIN(Grid);
@@ -516,5 +520,4 @@ int main(int argc, char **argv) {
Grid_finalize();
} // main
#endif
+6 -3
View File
@@ -27,7 +27,11 @@ See the full license in the file "LICENSE" in the top level distribution
directory
*************************************************************************************/
/* END LEGAL */
#include <Grid/Grid.h>
#include "disable_examples_without_instantiations.h"
#ifdef ENABLE_FERMION_INSTANTIATIONS
#include<Grid/Grid.h>
NAMESPACE_BEGIN(Grid);
@@ -567,5 +571,4 @@ int main(int argc, char **argv) {
Grid_finalize();
} // main
#endif
+6 -3
View File
@@ -27,7 +27,11 @@ See the full license in the file "LICENSE" in the top level distribution
directory
*************************************************************************************/
/* END LEGAL */
#include <Grid/Grid.h>
#include "disable_examples_without_instantiations.h"
#ifdef ENABLE_FERMION_INSTANTIATIONS
#include<Grid/Grid.h>
int main(int argc, char **argv) {
using namespace Grid;
@@ -263,5 +267,4 @@ int main(int argc, char **argv) {
Grid_finalize();
} // main
#endif
+6 -3
View File
@@ -27,7 +27,11 @@ See the full license in the file "LICENSE" in the top level distribution
directory
*************************************************************************************/
/* END LEGAL */
#include <Grid/Grid.h>
#include "disable_examples_without_instantiations.h"
#ifdef ENABLE_FERMION_INSTANTIATIONS
#include<Grid/Grid.h>
int main(int argc, char **argv) {
using namespace Grid;
@@ -417,5 +421,4 @@ int main(int argc, char **argv) {
Grid_finalize();
} // main
#endif
+6 -3
View File
@@ -27,7 +27,11 @@ See the full license in the file "LICENSE" in the top level distribution
directory
*************************************************************************************/
/* END LEGAL */
#include <Grid/Grid.h>
#include "disable_examples_without_instantiations.h"
#ifdef ENABLE_FERMION_INSTANTIATIONS
#include<Grid/Grid.h>
NAMESPACE_BEGIN(Grid);
@@ -452,5 +456,4 @@ int main(int argc, char **argv) {
Grid_finalize();
} // main
#endif
+6 -3
View File
@@ -27,7 +27,11 @@ See the full license in the file "LICENSE" in the top level distribution
directory
*************************************************************************************/
/* END LEGAL */
#include <Grid/Grid.h>
#include "disable_examples_without_instantiations.h"
#ifdef ENABLE_FERMION_INSTANTIATIONS
#include<Grid/Grid.h>
NAMESPACE_BEGIN(Grid);
@@ -462,5 +466,4 @@ int main(int argc, char **argv) {
Grid_finalize();
} // main
#endif
+6 -3
View File
@@ -27,7 +27,11 @@ See the full license in the file "LICENSE" in the top level distribution
directory
*************************************************************************************/
/* END LEGAL */
#include <Grid/Grid.h>
#include "disable_examples_without_instantiations.h"
#ifdef ENABLE_FERMION_INSTANTIATIONS
#include<Grid/Grid.h>
@@ -264,5 +268,4 @@ int main(int argc, char **argv) {
Grid_finalize();
} // main
#endif
@@ -0,0 +1,16 @@
#include <Grid/Grid.h>
#pragma once
#ifndef ENABLE_FERMION_INSTANTIATIONS
#include <iostream>
int main(void) {
std::cout << "This build of Grid was configured to exclude fermion instantiations, "
<< "which this example relies on. "
<< "Please reconfigure and rebuild Grid with --enable-fermion-instantiations"
<< "to run this example."
<< std::endl;
return 1;
}
#endif
+5
View File
@@ -26,6 +26,9 @@ Author: paboyle <paboyle@ph.ed.ac.uk>
See the full license in the file "LICENSE" in the top level distribution directory
*************************************************************************************/
/* END LEGAL */
#include "disable_benchmarks_without_instantiations.h"
#ifdef ENABLE_FERMION_INSTANTIATIONS
#include <Grid/Grid.h>
using namespace Grid;
@@ -731,3 +734,5 @@ int main (int argc, char ** argv)
Grid_finalize();
}
#endif
+4
View File
@@ -20,6 +20,9 @@
See the full license in the file "LICENSE" in the top level distribution directory
*************************************************************************************/
/* END LEGAL */
#include "disable_benchmarks_without_instantiations.h"
#ifdef ENABLE_FERMION_INSTANTIATIONS
#include <Grid/Grid.h>
#ifdef GRID_CUDA
#define CUDA_PROFILE
@@ -439,3 +442,4 @@ void Benchmark(int Ls, Coordinate Dirichlet,bool sloppy)
GRID_ASSERT(norm2(src_e)<1.0e-4);
GRID_ASSERT(norm2(src_o)<1.0e-4);
}
#endif
+6
View File
@@ -20,6 +20,10 @@
See the full license in the file "LICENSE" in the top level distribution directory
*************************************************************************************/
/* END LEGAL */
#include "disable_benchmarks_without_instantiations.h"
#ifdef ENABLE_FERMION_INSTANTIATIONS
#include <Grid/Grid.h>
#ifdef GRID_CUDA
#define CUDA_PROFILE
@@ -439,3 +443,5 @@ void Benchmark(int Ls, Coordinate Dirichlet,bool sloppy)
GRID_ASSERT(norm2(src_e)<1.0e-4);
GRID_ASSERT(norm2(src_o)<1.0e-4);
}
#endif
@@ -20,6 +20,9 @@
See the full license in the file "LICENSE" in the top level distribution directory
*************************************************************************************/
/* END LEGAL */
#include "disable_benchmarks_without_instantiations.h"
#ifdef ENABLE_FERMION_INSTANTIATIONS
#include <Grid/Grid.h>
#ifdef GRID_CUDA
#define CUDA_PROFILE
@@ -385,3 +388,5 @@ int main (int argc, char ** argv)
Grid_finalize();
exit(0);
}
#endif
+4 -2
View File
@@ -26,6 +26,9 @@ Author: paboyle <paboyle@ph.ed.ac.uk>
See the full license in the file "LICENSE" in the top level distribution directory
*************************************************************************************/
/* END LEGAL */
#include "disable_benchmarks_without_instantiations.h"
#ifdef ENABLE_FERMION_INSTANTIATIONS
#include <Grid/Grid.h>
using namespace std;
@@ -238,5 +241,4 @@ void benchDw(std::vector<int> & latt4, int Ls, int threads,int report )
}
}
#endif
+5
View File
@@ -1,3 +1,7 @@
#include "disable_benchmarks_without_instantiations.h"
#ifdef ENABLE_FERMION_INSTANTIATIONS
#include <Grid/Grid.h>
#include <sstream>
using namespace std;
@@ -155,3 +159,4 @@ int main (int argc, char ** argv)
Grid_finalize();
}
#endif
+5
View File
@@ -20,6 +20,9 @@
See the full license in the file "LICENSE" in the top level distribution directory
*************************************************************************************/
/* END LEGAL */
#include "disable_benchmarks_without_instantiations.h"
#ifdef ENABLE_FERMION_INSTANTIATIONS
#include <Grid/Grid.h>
#ifdef GRID_CUDA
#define CUDA_PROFILE
@@ -129,3 +132,5 @@ int main (int argc, char ** argv)
Grid_finalize();
exit(0);
}
#endif
+5
View File
@@ -26,6 +26,9 @@ Author: paboyle <paboyle@ph.ed.ac.uk>
See the full license in the file "LICENSE" in the top level distribution directory
*************************************************************************************/
/* END LEGAL */
#include "disable_benchmarks_without_instantiations.h"
#ifdef ENABLE_FERMION_INSTANTIATIONS
#include <Grid/Grid.h>
using namespace std;
@@ -149,3 +152,5 @@ int main (int argc, char ** argv)
Grid_finalize();
}
#endif
+4 -2
View File
@@ -26,6 +26,9 @@ Author: paboyle <paboyle@ph.ed.ac.uk>
See the full license in the file "LICENSE" in the top level distribution directory
*************************************************************************************/
/* END LEGAL */
#include "disable_benchmarks_without_instantiations.h"
#ifdef ENABLE_FERMION_INSTANTIATIONS
#include <Grid/Grid.h>
using namespace std;
@@ -172,5 +175,4 @@ void benchDw(std::vector<int> & latt4, int Ls)
// Dw.Report();
}
#endif
+5
View File
@@ -26,6 +26,9 @@ Author: paboyle <paboyle@ph.ed.ac.uk>
See the full license in the file "LICENSE" in the top level distribution directory
*************************************************************************************/
/* END LEGAL */
#include "disable_benchmarks_without_instantiations.h"
#ifdef ENABLE_FERMION_INSTANTIATIONS
#include <Grid/Grid.h>
using namespace std;
@@ -110,3 +113,5 @@ int main (int argc, char ** argv)
Grid_finalize();
}
#endif
+5
View File
@@ -26,6 +26,9 @@ Author: paboyle <paboyle@ph.ed.ac.uk>
See the full license in the file "LICENSE" in the top level distribution directory
*************************************************************************************/
/* END LEGAL */
#include "disable_benchmarks_without_instantiations.h"
#ifdef ENABLE_FERMION_INSTANTIATIONS
#include <Grid/Grid.h>
using namespace std;
@@ -112,3 +115,5 @@ int main (int argc, char ** argv)
Grid_finalize();
}
#endif
+6
View File
@@ -26,6 +26,10 @@ Author: paboyle <paboyle@ph.ed.ac.uk>
See the full license in the file "LICENSE" in the top level distribution directory
*************************************************************************************/
/* END LEGAL */
#include "disable_benchmarks_without_instantiations.h"
#ifdef ENABLE_FERMION_INSTANTIATIONS
#include <Grid/Grid.h>
#include <Grid/algorithms/blas/BatchedBlas.h>
@@ -978,3 +982,5 @@ int main (int argc, char ** argv)
Grid_finalize();
fclose(FP);
}
#endif
+5
View File
@@ -26,6 +26,9 @@ Author: paboyle <paboyle@ph.ed.ac.uk>
See the full license in the file "LICENSE" in the top level distribution directory
*************************************************************************************/
/* END LEGAL */
#include "disable_benchmarks_without_instantiations.h"
#ifdef ENABLE_FERMION_INSTANTIATIONS
#include <Grid/Grid.h>
using namespace std;
@@ -258,3 +261,5 @@ int main (int argc, char ** argv)
Grid_finalize();
}
#endif
+5
View File
@@ -19,6 +19,9 @@ Author: Richard Rollins <rprollins@users.noreply.github.com>
See the full license in the file "LICENSE" in the top level distribution directory
*************************************************************************************/
/* END LEGAL */
#include "disable_benchmarks_without_instantiations.h"
#ifdef ENABLE_FERMION_INSTANTIATIONS
#include <Grid/Grid.h>
using namespace std;
@@ -161,3 +164,5 @@ void bench_wilson_eo (
double flops = (single_site_flops * volume * ncall)/2.0;
std::cout << flops/(t1-t0) << "\t\t";
}
#endif
@@ -0,0 +1,16 @@
#include <Grid/Grid.h>
#pragma once
#ifndef ENABLE_FERMION_INSTANTIATIONS
#include <iostream>
int main(void) {
std::cout << "This build of Grid was configured to exclude fermion instantiations, "
<< "which this benchmark relies on. "
<< "Please reconfigure and rebuild Grid with --enable-fermion-instantiations"
<< "to run this benchmark."
<< std::endl;
return 1;
}
#endif
+9
View File
@@ -172,6 +172,12 @@ case ${ac_TRACING} in
esac
############### fermions
AC_ARG_ENABLE([fermion-instantiations],
[AS_HELP_STRING([--enable-fermion-instantiations=yes|no],[enable fermion instantiations])],
[ac_FERMION_REPS=${enable_fermion_instantiations}], [ac_FERMION_INSTANTIATIONS=yes])
AM_CONDITIONAL(BUILD_FERMION_INSTANTIATIONS, [ test "${ac_FERMION_INSTANTIATIONS}X" == "yesX" ])
AC_ARG_ENABLE([fermion-reps],
[AS_HELP_STRING([--enable-fermion-reps=yes|no],[enable extra fermion representation support])],
[ac_FERMION_REPS=${enable_fermion_reps}], [ac_FERMION_REPS=yes])
@@ -194,6 +200,9 @@ AM_CONDITIONAL(BUILD_ZMOBIUS, [ test "${ac_ZMOBIUS}X" == "yesX" ])
case ${ac_FERMION_REPS} in
yes) AC_DEFINE([ENABLE_FERMION_REPS],[1],[non QCD fermion reps]);;
esac
case ${ac_FERMION_INSTANTIATIONS} in
yes) AC_DEFINE([ENABLE_FERMION_INSTANTIATIONS],[1],[enable fermions]);;
esac
case ${ac_GPARITY} in
yes) AC_DEFINE([ENABLE_GPARITY],[1],[fermion actions with GPARITY BCs]);;
esac
+4 -2
View File
@@ -3,6 +3,9 @@
* without regression / tests being applied
*/
#include "disable_examples_without_instantiations.h"
#ifdef ENABLE_FERMION_INSTANTIATIONS
#include <Grid/Grid.h>
using namespace std;
@@ -310,5 +313,4 @@ int main (int argc, char ** argv)
Grid_finalize();
}
#endif
+4 -2
View File
@@ -3,6 +3,9 @@
* without regression / tests being applied
*/
#include "disable_examples_without_instantiations.h"
#ifdef ENABLE_FERMION_INSTANTIATIONS
#include <Grid/Grid.h>
using namespace std;
@@ -432,5 +435,4 @@ int main (int argc, char ** argv)
Grid_finalize();
}
#endif
+699
View File
@@ -0,0 +1,699 @@
/*************************************************************************************
Grid physics library, www.github.com/paboyle/Grid
Source file: ./examples/Example_pvdagm_3level.cc
Copyright (C) 2023
Author: Peter Boyle <paboyle@ph.ed.ac.uk>
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
See the full license in the file "LICENSE" in the top level distribution directory
*************************************************************************************/
/* END LEGAL */
#include <Grid/Grid.h>
#include <Grid/lattice/PaddedCell.h>
#include <Grid/stencil/GeneralLocalStencil.h>
#include <Grid/algorithms/iterative/PrecGeneralisedConjugateResidual.h>
#include <Grid/algorithms/iterative/PrecGeneralisedConjugateResidualNonHermitian.h>
#include <Grid/algorithms/iterative/BiCGSTAB.h>
using namespace std;
using namespace Grid;
template <class T> void readFile(T& out, std::string const fname){
#ifdef HAVE_LIME
std::cout << Grid::GridLogMessage << "Reading: " << fname << std::endl;
Grid::emptyUserRecord record;
Grid::ScidacReader SR;
SR.open(fname);
SR.readScidacFieldRecord(out, record);
SR.close();
#endif
}
template <class T> void writeFile(T& in, std::string const fname){
#ifdef HAVE_LIME
std::cout << Grid::GridLogMessage << "Writing: " << fname << std::endl;
Grid::emptyUserRecord record;
Grid::ScidacWriter SW(in.Grid()->IsBoss());
SW.open(fname);
SW.writeScidacFieldRecord(in, record);
SW.close();
#endif
}
template <class Field>
void saveSubspace(std::vector<Field> &subspace, std::string const fname){
#ifdef HAVE_LIME
std::cout << Grid::GridLogMessage << "Saving subspace (" << subspace.size() << " vectors) to: " << fname << std::endl;
Grid::emptyUserRecord record;
Grid::ScidacWriter SW(subspace[0].Grid()->IsBoss());
SW.open(fname);
for (int k = 0; k < (int)subspace.size(); k++)
SW.writeScidacFieldRecord(subspace[k], record);
SW.close();
#endif
}
template <class Field>
void loadSubspace(std::vector<Field> &subspace, std::string const fname){
#ifdef HAVE_LIME
std::cout << Grid::GridLogMessage << "Loading subspace (" << subspace.size() << " vectors) from: " << fname << std::endl;
Grid::emptyUserRecord record;
Grid::ScidacReader SR;
SR.open(fname);
for (int k = 0; k < (int)subspace.size(); k++)
SR.readScidacFieldRecord(subspace[k], record);
SR.close();
#endif
}
template<class Matrix,class Field>
class PVdagMLinearOperator : public LinearOperatorBase<Field> {
Matrix &_Mat;
Matrix &_PV;
int nApp;
int nAppDag;
public:
PVdagMLinearOperator(Matrix &Mat,Matrix &PV): _Mat(Mat),_PV(PV), nApp(0), nAppDag(0) {};
void OpDiag (const Field &in, Field &out) { assert(0); }
void OpDir (const Field &in, Field &out,int dir,int disp) { assert(0); }
void OpDirAll (const Field &in, std::vector<Field> &out){ assert(0); };
void Op (const Field &in, Field &out){
Field tmp(in.Grid());
_Mat.M(in,tmp);
_PV.Mdag(tmp,out);
nApp++;
}
void AdjOp (const Field &in, Field &out){
Field tmp(in.Grid());
_PV.M(in,tmp);
_Mat.Mdag(tmp,out);
nAppDag++;
}
void clear() { nApp = 0; nAppDag = 0; }
void getApplications() {
std::cout << GridLogMessage << "# applications of PVdagM: " << nApp << std::endl;
std::cout << GridLogMessage << "# applications of PVdagM^dag: " << nAppDag << std::endl;
std::cout << GridLogMessage << "# applications total: " << nApp + nAppDag << std::endl;
}
void HermOpAndNorm(const Field &in, Field &out,RealD &n1,RealD &n2){
HermOp(in,out);
ComplexD dot = innerProduct(in,out);
n1=real(dot);
n2=norm2(out);
}
void HermOp(const Field &in, Field &out){
Field tmp(in.Grid());
Op(in,tmp);
AdjOp(tmp,out);
}
};
template<class Matrix,class Field>
class MdagPVLinearOperator : public LinearOperatorBase<Field> {
Matrix &_Mat;
Matrix &_PV;
public:
MdagPVLinearOperator(Matrix &Mat,Matrix &PV): _Mat(Mat),_PV(PV){};
void OpDiag (const Field &in, Field &out) { assert(0); }
void OpDir (const Field &in, Field &out,int dir,int disp) { assert(0); }
void OpDirAll (const Field &in, std::vector<Field> &out){ assert(0); };
void Op (const Field &in, Field &out){
Field tmp(in.Grid());
_PV.M(in,tmp);
_Mat.Mdag(tmp,out);
}
void AdjOp (const Field &in, Field &out){
Field tmp(in.Grid());
_Mat.M(in,tmp);
_PV.Mdag(tmp,out);
}
void HermOpAndNorm(const Field &in, Field &out,RealD &n1,RealD &n2){
ComplexD dot = innerProduct(in,out);
n1=real(dot);
n2=norm2(out);
}
void HermOp(const Field &in, Field &out){
Field tmp(in.Grid());
Op(in,tmp);
AdjOp(tmp,out);
}
};
template<class Matrix,class Field>
class ShiftedPVdagMLinearOperator : public LinearOperatorBase<Field> {
Matrix &_Mat;
Matrix &_PV;
RealD shift;
public:
ShiftedPVdagMLinearOperator(RealD _shift,Matrix &Mat,Matrix &PV): shift(_shift),_Mat(Mat),_PV(PV){};
void OpDiag (const Field &in, Field &out) { assert(0); }
void OpDir (const Field &in, Field &out,int dir,int disp) { assert(0); }
void OpDirAll (const Field &in, std::vector<Field> &out){ assert(0); };
void Op (const Field &in, Field &out){
Field tmp(in.Grid());
_Mat.M(in,tmp);
_PV.Mdag(tmp,out);
out = out + shift * in;
}
void AdjOp (const Field &in, Field &out){
Field tmp(in.Grid());
_PV.M(tmp,out);
_Mat.Mdag(in,tmp);
out = out + shift * in;
}
void HermOpAndNorm(const Field &in, Field &out,RealD &n1,RealD &n2){ assert(0); }
void HermOp(const Field &in, Field &out){
Field tmp(in.Grid());
Op(in,tmp);
AdjOp(tmp,out);
}
};
// Lüscher deflated guesser (arXiv:0706.2298 Sec A.3) for a non-Hermitian solve.
// C_{st} = <psi[s] | LinOp | psi[t]>; guess = sum_s c_s psi[s] where c = C^{-1} psi† src.
template<class Field>
class LuscherGuesser : public LinearFunction<Field> {
const std::vector<Field> &psi;
Eigen::MatrixXcd C_inv;
public:
using LinearFunction<Field>::operator();
LuscherGuesser(const std::vector<Field> &psi_, const Eigen::MatrixXcd &Cinv_)
: psi(psi_), C_inv(Cinv_) {}
virtual void operator()(const Field &src, Field &guess) {
int N = psi.size();
Eigen::VectorXcd b(N);
for (int t = 0; t < N; t++)
b(t) = TensorRemove(innerProduct(psi[t], src));
Eigen::VectorXcd c = C_inv * b;
guess = Zero();
for (int s = 0; s < N; s++)
guess += ComplexD(c(s)) * psi[s];
}
};
template<class Fobj,class CComplex,int nbasis>
class MGPreconditioner : public LinearFunction< Lattice<Fobj> > {
public:
using LinearFunction<Lattice<Fobj> >::operator();
typedef Aggregation<Fobj,CComplex,nbasis> Aggregates;
typedef typename Aggregation<Fobj,CComplex,nbasis>::FineField FineField;
typedef typename Aggregation<Fobj,CComplex,nbasis>::CoarseVector CoarseVector;
typedef typename Aggregation<Fobj,CComplex,nbasis>::CoarseMatrix CoarseMatrix;
typedef LinearOperatorBase<FineField> FineOperator;
typedef LinearFunction <FineField> FineSmoother;
typedef LinearOperatorBase<CoarseVector> CoarseOperator;
typedef LinearFunction <CoarseVector> CoarseSolver;
Aggregates & _Aggregates;
FineOperator & _FineOperator;
FineSmoother & _PreSmoother;
FineSmoother & _PostSmoother;
CoarseOperator & _CoarseOperator;
CoarseSolver & _CoarseSolve;
CoarseSolver & _CoarseGuesser;
int level; void Level(int lv) {level = lv; };
MGPreconditioner(Aggregates &Agg,
FineOperator &Fine,
FineSmoother &PreSmoother,
FineSmoother &PostSmoother,
CoarseOperator &CoarseOperator_,
CoarseSolver &CoarseSolve_,
CoarseSolver &CoarseGuesser_)
: _Aggregates(Agg),
_FineOperator(Fine),
_PreSmoother(PreSmoother),
_PostSmoother(PostSmoother),
_CoarseOperator(CoarseOperator_),
_CoarseSolve(CoarseSolve_),
_CoarseGuesser(CoarseGuesser_),
level(1) { }
virtual void operator()(const FineField &in, FineField & out)
{
GridBase *CoarseGrid = _Aggregates.CoarseGrid;
CoarseVector Csrc(CoarseGrid);
CoarseVector Csol(CoarseGrid);
FineField vec1(in.Grid());
FineField vec2(in.Grid());
double t;
out = Zero();
t=-usecond();
_PreSmoother(in,out);
t+=usecond();
std::cout<<GridLogMessage << "PreSmoother took "<< t/1000.0<< "ms" <<std::endl;
_FineOperator.Op(out,vec1); sub(vec1, in ,vec1);
t=-usecond();
_Aggregates.ProjectToSubspace(Csrc,vec1);
t+=usecond();
std::cout<<GridLogMessage << "Project to coarse took "<< t/1000.0<< "ms" <<std::endl;
t=-usecond();
_CoarseGuesser(Csrc,Csol);
_CoarseSolve(Csrc,Csol);
t+=usecond();
std::cout<<GridLogMessage << "Coarse solve took "<< t/1000.0<< "ms" <<std::endl;
t=-usecond();
_Aggregates.PromoteFromSubspace(Csol,vec1);
add(out,out,vec1);
t+=usecond();
std::cout<<GridLogMessage << "Promote to this level took "<< t/1000.0<< "ms" <<std::endl;
_FineOperator.Op(out,vec1); sub(vec1 ,in , vec1);
t=-usecond();
vec2=Zero();
_PostSmoother(vec1,vec2);
t+=usecond();
std::cout<<GridLogMessage << "PostSmoother took "<< t/1000.0<< "ms" <<std::endl;
add(out,out,vec2);
}
};
// Generic shifted linear operator: wraps any LinearOperatorBase and adds shift*I.
// Used to condition the coarse-level GCR smoother, analogous to ShiftedPVdagMLinearOperator
// at the fine level.
template<class Field>
class ShiftedLinearOperator : public LinearOperatorBase<Field> {
LinearOperatorBase<Field> &_Op;
RealD shift;
public:
ShiftedLinearOperator(RealD _shift, LinearOperatorBase<Field> &Op) : shift(_shift), _Op(Op) {}
void OpDiag (const Field &in, Field &out) { assert(0); }
void OpDir (const Field &in, Field &out, int dir, int disp) { assert(0); }
void OpDirAll (const Field &in, std::vector<Field> &out) { assert(0); }
void Op (const Field &in, Field &out) { _Op.Op(in, out); out = out + shift * in; }
void AdjOp (const Field &in, Field &out) { _Op.AdjOp(in, out); out = out + shift * in; }
void HermOpAndNorm(const Field &in, Field &out, RealD &n1, RealD &n2) { assert(0); }
void HermOp (const Field &in, Field &out) { Field tmp(in.Grid()); Op(in,tmp); AdjOp(tmp,out); }
};
template<int NB, class PVdagM_t, class ShiftedPVdagM_t, class Subspace, class LittleDiracOperator, class CoarseVector, class TwoLevelMG>
void runMG(
GridCartesian *FGrid,
GridCartesian *Coarse5d,
GridCartesian *CoarseCoarse5d,
NextToNearestStencilGeometry5D geom,
PVdagM_t &PVdagM,
ShiftedPVdagM_t &ShiftedPVdagM,
Subspace &AggregatesPD
) {
std::vector<LatticeFermion> subspace = AggregatesPD.subspace;
assert((int)subspace.size() == NB);
const int nbasis = NB;
const int cb = 0;
CoarseVector c_src(Coarse5d);
CoarseVector c_res(Coarse5d);
Complex one(1.0);
LatticeFermionD f_src(FGrid);
LatticeFermionD f_res(FGrid);
TrivialPrecon<CoarseVector> simpleC;
TrivialPrecon<LatticeFermionD> simple_fine;
//////////////////////////////////////////////////////////////////////
// Level 0→1: coarsen PVdagM, build LinOpCoarse
//////////////////////////////////////////////////////////////////////
LittleDiracOperator LittleDiracOpPV(geom, FGrid, Coarse5d);
LittleDiracOpPV.CoarsenOperator(PVdagM, AggregatesPD);
NonHermitianLinearOperator<LittleDiracOperator,CoarseVector> LinOpCoarse(LittleDiracOpPV);
//////////////////////////////////////////////////////////////////////
// Baseline: plain PGCR on LinOpCoarse (reference for comparison)
//////////////////////////////////////////////////////////////////////
std::cout<<GridLogMessage<<"*******************************************"<<std::endl;
std::cout<<GridLogMessage<<" Level 1 solve: plain PGCR baseline"<<std::endl;
std::cout<<GridLogMessage<<"*******************************************"<<std::endl;
PrecGeneralisedConjugateResidualNonHermitian<CoarseVector> L2PGCR_baseline(3.0e-2,1100,LinOpCoarse,simpleC,10,10);
L2PGCR_baseline.Level(2);
L2PGCR_baseline.Name("Cbaseline");
c_src = one;
c_res = Zero();
L2PGCR_baseline(c_src,c_res);
//////////////////////////////////////////////////////////////////////
// psi_coarse: coarse projections of pre-GS fine null vectors.
// These are the Level 1 near-null vectors, promoted from Level 0.
// Used as the aggregation basis for Level 1→2 coarsening.
//////////////////////////////////////////////////////////////////////
std::vector<CoarseVector> psi_coarse(nbasis, Coarse5d);
for (int k = 0; k < nbasis; k++)
AggregatesPD.ProjectToSubspace(psi_coarse[k], subspace[k]);
//////////////////////////////////////////////////////////////////////
// Diagnostics: W (fine projected matrix) and C (Galerkin check)
//////////////////////////////////////////////////////////////////////
{
Eigen::MatrixXcd W = Eigen::MatrixXcd::Zero(nbasis, nbasis);
LatticeFermion ftmp(FGrid);
for (int j = 0; j < nbasis; j++) {
PVdagM.Op(subspace[j], ftmp);
for (int i = 0; i < nbasis; i++)
W(i,j) = TensorRemove(innerProduct(subspace[i], ftmp));
}
RealD normW = W.norm();
std::cout << GridLogMessage << "Fine projected matrix ||W|| = " << normW << std::endl;
Eigen::MatrixXcd C = Eigen::MatrixXcd::Zero(nbasis, nbasis);
CoarseVector Ac(Coarse5d);
for (int l = 0; l < nbasis; l++) {
LinOpCoarse.Op(psi_coarse[l], Ac);
for (int k = 0; k < nbasis; k++)
C(k,l) = TensorRemove(innerProduct(psi_coarse[k], Ac));
}
RealD normC = C.norm();
RealD normCmCdag = (C - C.adjoint()).norm();
std::cout << GridLogMessage << "Coarse null matrix ||C|| = " << normC << std::endl;
std::cout << GridLogMessage << "Coarse null matrix ||C - C†||/||C|| = " << normCmCdag/normC << std::endl;
std::cout << GridLogMessage << "Galerkin check ||C||/||W|| = " << normC/normW << std::endl;
}
//////////////////////////////////////////////////////////////////////
// Level 1→2: set up aggregation using psi_coarse as subspace.
// Block factor 2,2,3,2 (removes odd local sublattice in z given MPI
// geometry 3×6×4×4 where z-local at Level 1 is 6).
// psi_coarse are assigned directly; CoarsenOperator performs
// block-GS orthogonalisation before building LinOpCoarseCoarse.
//////////////////////////////////////////////////////////////////////
// innerProduct(CoarseSiteObj, CoarseSiteObj) returns iScalar<vTComplex>, so CComplex
// for the L1→L2 level must be iScalar<vTComplex>, not vTComplex.
typedef typename CoarseVector::vector_object CoarseSiteObj;
typedef iScalar<vTComplex> vTTComplex;
typedef GeneralCoarsenedMatrix<CoarseSiteObj,vTTComplex,NB> LittleDiracOperatorL2;
typedef typename LittleDiracOperatorL2::CoarseVector CoarseCoarseVector;
typedef Aggregation<CoarseSiteObj,vTTComplex,NB> SubspaceL2;
typedef MGPreconditioner<CoarseSiteObj,vTTComplex,NB> L1to2MG;
SubspaceL2 AggregatesL2(CoarseCoarse5d, Coarse5d, cb);
for (int k = 0; k < nbasis; k++)
AggregatesL2.subspace[k] = psi_coarse[k];
NextToNearestStencilGeometry5D geom2(CoarseCoarse5d);
LittleDiracOperatorL2 LittleDiracOpL2(geom2, Coarse5d, CoarseCoarse5d);
LittleDiracOpL2.CoarsenOperator(LinOpCoarse, AggregatesL2);
NonHermitianLinearOperator<LittleDiracOperatorL2,CoarseCoarseVector> LinOpCC(LittleDiracOpL2);
TrivialPrecon<CoarseCoarseVector> simpleCC;
//////////////////////////////////////////////////////////////////////
// Lüscher deflation guesser for L3PGCR.
// Step 1: project psi_coarse[k] (promoted fine null vectors) to
// CoarseCoarseVector space — these cover the zero-momentum
// component of the near-null space of LinOpCC.
// Step 2: breed Nextra additional null vectors directly on LinOpCC
// using GCR with random sources — these pick up near-null
// modes at all spatial frequencies not spanned by step 1.
// Step 3: build C_{st} = <psi_cc[s]|LinOpCC|psi_cc[t]> over the
// full augmented basis and invert directly via Eigen LU.
//////////////////////////////////////////////////////////////////////
std::vector<CoarseCoarseVector> psi_cc(nbasis, CoarseCoarse5d);
for (int k = 0; k < nbasis; k++)
AggregatesL2.ProjectToSubspace(psi_cc[k], psi_coarse[k]);
{
int Nextra = nbasis; // breed as many extra as we have promoted ones
if ( getenv("CC_NEXTRA") ) Nextra = atoi(getenv("CC_NEXTRA"));
GridParallelRNG RNG_CC(CoarseCoarse5d);
RNG_CC.SeedFixedIntegers({11,13,17,19});
PrecGeneralisedConjugateResidualNonHermitian<CoarseCoarseVector>
nullGCR(1e-2, 200, LinOpCC, simpleCC, 32, 32);
CoarseCoarseVector tmp(CoarseCoarse5d);
for (int k = 0; k < Nextra; k++) {
CoarseCoarseVector src(CoarseCoarse5d);
gaussian(RNG_CC, src);
tmp = Zero();
nullGCR(src, tmp);
psi_cc.push_back(tmp);
}
std::cout << GridLogMessage << "LinOpCC deflation basis: " << nbasis
<< " promoted + " << Nextra << " bred = " << psi_cc.size() << " total" << std::endl;
}
const int Naug = psi_cc.size();
Eigen::MatrixXcd Ccc = Eigen::MatrixXcd::Zero(Naug, Naug);
{
CoarseCoarseVector Acc(CoarseCoarse5d);
for (int l = 0; l < Naug; l++) {
LinOpCC.Op(psi_cc[l], Acc);
for (int k = 0; k < Naug; k++)
Ccc(k,l) = TensorRemove(innerProduct(psi_cc[k], Acc));
}
}
{
RealD normCcc = Ccc.norm();
RealD normCccmCdag = (Ccc - Ccc.adjoint()).norm();
std::cout << GridLogMessage << "Coarse-coarse deflation matrix ||Ccc|| = " << normCcc << std::endl;
std::cout << GridLogMessage << "Coarse-coarse deflation matrix ||Ccc-Ccc†||/||Ccc|| = " << normCccmCdag/normCcc << std::endl;
}
Eigen::MatrixXcd Ccc_inv = Ccc.inverse();
LuscherGuesser<CoarseCoarseVector> CCDeflGuesser(psi_cc, Ccc_inv);
//////////////////////////////////////////////////////////////////////
// Level 2 solver: plain GCR, no further coarsening
//////////////////////////////////////////////////////////////////////
PrecGeneralisedConjugateResidualNonHermitian<CoarseCoarseVector> L3PGCR(1.0e-1,200,LinOpCC,simpleCC,16,16);
L3PGCR.Level(3);
L3PGCR.Name("CCouter");
//////////////////////////////////////////////////////////////////////
// Coarse-level GCR smoother for Level 1→2 V-cycle.
// Mirrors fine-grid SmootherGCR: shifted operator + fixed step count.
// coarse_smoother_shift and coarse_smoother_nstep are the tuning knobs.
//////////////////////////////////////////////////////////////////////
RealD coarse_smoother_shift = 0.01;
int coarse_smoother_nstep = 12;
if(getenv("coarse_smoother_shift")) coarse_smoother_shift = atof(getenv("coarse_smoother_shift"));
if(getenv("coarse_smoother_nstep")) coarse_smoother_nstep = atoi(getenv("coarse_smoother_nstep"));
ShiftedLinearOperator<CoarseVector> ShiftedLinOpCoarse(coarse_smoother_shift, LinOpCoarse);
PrecGeneralisedConjugateResidualNonHermitian<CoarseVector> CoarseSmootherGCR(0.01,1,ShiftedLinOpCoarse,simpleC,coarse_smoother_nstep,coarse_smoother_nstep);
CoarseSmootherGCR.SetZeroGuess(1); // smoother slot: caller zeroes guess
CoarseSmootherGCR.Level(2);
CoarseSmootherGCR.Name("Csmoother");
//////////////////////////////////////////////////////////////////////
// Level 1→2 V-cycle preconditioner.
//////////////////////////////////////////////////////////////////////
L1to2MG L1to2Precon(AggregatesL2,
LinOpCoarse,
simpleC, // no pre-smoother (matches fine-grid setup)
CoarseSmootherGCR, // post-smoother: 12 GCR steps
LinOpCC,
L3PGCR,
CCDeflGuesser); // Lüscher guesser: psi_cc C^{-1} psi_cc†
//////////////////////////////////////////////////////////////////////
// Standalone Level 1 two-level solve test.
// Compare against plain PGCR baseline above.
//////////////////////////////////////////////////////////////////////
std::cout<<GridLogMessage<<"*******************************************"<<std::endl;
std::cout<<GridLogMessage<<" Level 1 solve: two-level MG preconditioned PGCR"<<std::endl;
std::cout<<GridLogMessage<<"*******************************************"<<std::endl;
PrecGeneralisedConjugateResidualNonHermitian<CoarseVector> L2MGsolver(3.0e-2,200,LinOpCoarse,L1to2Precon,16,16);
L2MGsolver.Level(2);
L2MGsolver.Name("Couter");
c_res = Zero();
L2MGsolver(c_src,c_res);
std::cout << GridLogMessage << "Level 1 two-level test: PVdagM operator uses:" << std::endl;
PVdagM.getApplications();
PVdagM.clear();
//////////////////////////////////////////////////////////////////////
// Full three-level outer solve
//////////////////////////////////////////////////////////////////////
std::cout<<GridLogMessage<<"*******************************************"<<std::endl;
std::cout<<GridLogMessage<<" Three-level outer solve"<<std::endl;
std::cout<<GridLogMessage<<"*******************************************"<<std::endl;
PrecGeneralisedConjugateResidualNonHermitian<LatticeFermionD> SmootherGCR(0.01,1,ShiftedPVdagM,simple_fine,16,16);
SmootherGCR.SetZeroGuess(1); // pre/post smoother slots zero their guess
SmootherGCR.Level(1);
SmootherGCR.Name("Fsmoother");
f_src = one;
// Pre-smoother: none (TrivialPrecon); post-smoother: shifted PGCR.
// Coarse solver: L2MGsolver (PGCR preconditioned by Level 1→2 V-cycle).
TwoLevelMG ThreeLevelPrecon(AggregatesPD,
PVdagM,
simple_fine,
SmootherGCR,
LinOpCoarse,
L2MGsolver,
simpleC);
PrecGeneralisedConjugateResidualNonHermitian<LatticeFermion> L1PGCR(1.0e-8,1000,PVdagM,ThreeLevelPrecon,16,16);
L1PGCR.Level(1);
L1PGCR.Name("Fouter");
f_res = Zero();
L1PGCR(f_src,f_res);
std::cout << GridLogMessage << "Three-level outer solve: PVdagM operator uses:" << std::endl;
PVdagM.getApplications();
PVdagM.clear();
}
int main (int argc, char ** argv)
{
Grid_init(&argc,&argv);
const int Ls = 24;
RealD M5 = 1.8;
RealD b = 1.5;
RealD c = 0.5;
RealD mass = 0.00078;
if ( getenv("MASS") ) mass = atof(getenv("MASS"));
const int nbasis = 60;
std::cout << GridLogMessage << "Mass: " << mass << ", Ls: " << Ls << ", b=" << b << ", c=" << c << std::endl;
std::cout << GridLogMessage << "nbasis: " << nbasis << std::endl;
std::vector<int> lat_size {48, 48, 48, 96};
GridCartesian * UGrid = SpaceTimeGrid::makeFourDimGrid(lat_size, GridDefaultSimd(Nd,vComplex::Nsimd()),GridDefaultMpi());
GridRedBlackCartesian * UrbGrid = SpaceTimeGrid::makeFourDimRedBlackGrid(UGrid);
GridCartesian * FGrid = SpaceTimeGrid::makeFiveDimGrid(Ls,UGrid);
GridRedBlackCartesian * FrbGrid = SpaceTimeGrid::makeFiveDimRedBlackGrid(Ls,UGrid);
// Level 1 coarse grid: block 2^4 from fine (48×48×48×96 → 24×24×24×48, Ls=1)
Coordinate clatt = lat_size;
for (int d = 0; d < 4; d++) clatt[d] /= 2;
std::cout << GridLogMessage << "Level 1 coarse lattice: " << clatt << std::endl;
GridCartesian *Coarse4d = SpaceTimeGrid::makeFourDimGrid(clatt, GridDefaultSimd(Nd,vComplex::Nsimd()),GridDefaultMpi());
GridCartesian *Coarse5d = SpaceTimeGrid::makeFiveDimGrid(1,Coarse4d);
// Level 2 coarse-coarse grid: block 2,2,3,3 from Level 1 (24×24×24×48 → 12×12×8×16, Ls=1).
// MPI geometry 3.6.4.4 (288 ranks): fine local {16,8,12,24}.
// Level 1 local {8,4,6,12}; Level 2 local {4,2,2,4}.
// z blocked by 3: z-Level1-local=6; 6/3=2 (even), 6/2=3 (odd) → must use 3.
// t blocked by 3: t-Level1-local=12; 12/3=4 divisible by Nsimd=4 (gen-simd-width=64).
// t-block=2 gives t2-local=6, 6 mod 4 ≠ 0, fails Grid SIMD assertion. ✓
// With {4,2,2,4}: Nsimd=4 goes into x or t (both =4). ✓
Coordinate clatt2 = clatt;
clatt2[0] /= 2;
clatt2[1] /= 2;
clatt2[2] /= 3;
clatt2[3] /= 3;
std::cout << GridLogMessage << "Level 2 coarse-coarse lattice: " << clatt2 << std::endl;
GridCartesian *CoarseCoarse4d = SpaceTimeGrid::makeFourDimGrid(clatt2, GridDefaultSimd(Nd,vComplex::Nsimd()),GridDefaultMpi());
GridCartesian *CoarseCoarse5d = SpaceTimeGrid::makeFiveDimGrid(1,CoarseCoarse4d);
std::vector<int> seeds4({1,2,3,4});
std::vector<int> seeds5({5,6,7,8});
GridParallelRNG RNG5(FGrid); RNG5.SeedFixedIntegers(seeds5);
GridParallelRNG RNG4(UGrid); RNG4.SeedFixedIntegers(seeds4);
LatticeGaugeField Umu(UGrid);
std::cout << GridLogMessage << "Reading gauge field" << std::endl;
FieldMetaData header;
std::string file("/ccs/home/poare/ckpoint_lat.1000");
NerscIO::readConfiguration(Umu,header,file);
RealD b_ = 1.5;
RealD c_ = 0.5;
MobiusFermionD Ddwf(Umu,*FGrid,*FrbGrid,*UGrid,*UrbGrid,mass,M5,b_,c_);
MobiusFermionD Dpv (Umu,*FGrid,*FrbGrid,*UGrid,*UrbGrid,1.0, M5,b_,c_);
typedef PVdagMLinearOperator<MobiusFermionD,LatticeFermionD> PVdagM_t;
typedef ShiftedPVdagMLinearOperator<MobiusFermionD,LatticeFermionD> ShiftedPVdagM_t;
typedef GeneralCoarsenedMatrix<vSpinColourVector,vTComplex,nbasis> LittleDiracOperator;
typedef LittleDiracOperator::CoarseVector CoarseVector;
typedef Aggregation<vSpinColourVector,vTComplex,nbasis> Subspace;
typedef MGPreconditioner<vSpinColourVector,vTComplex,nbasis> TwoLevelMG;
PVdagM_t PVdagM(Ddwf,Dpv);
ShiftedPVdagM_t ShiftedPVdagM(0.01,Ddwf,Dpv);
NextToNearestStencilGeometry5D geom(Coarse5d);
// Subspace cache: save after generation, reload on subsequent runs to skip expensive setup.
// Set SUBSPACE_FILE to override the default path.
std::string subspace_file = "/lustre/orion/phy157/proj-shared/phy157_dwf/paboyle/subspace_nb"
+ std::to_string(nbasis) + ".scidac";
if ( getenv("SUBSPACE_FILE") ) subspace_file = std::string(getenv("SUBSPACE_FILE"));
// Check if subspace file exists (boss rank checks, result broadcast via GlobalSum).
uint64_t file_exists = 0;
if ( UGrid->IsBoss() ) {
std::ifstream f(subspace_file);
file_exists = f.good() ? 1 : 0;
}
UGrid->GlobalSum(file_exists);
const int cb = 0;
Subspace AggregatesGCR(Coarse5d,FGrid,cb);
if ( file_exists ) {
std::cout << GridLogMessage << "*** Loading subspace from disk ***" << std::endl;
loadSubspace(AggregatesGCR.subspace, subspace_file);
// Insurance: GLOBAL (whole-lattice) orthonormalise, matching CreateSubspaceGCR
// (Aggregates.h:196), in case the cached file predates it. Span-preserving
// and globally orthonormal -- NOT the block Orthogonalise() below, which would
// defeat the raw-null discipline (runMG promotes the RAW subspace to build L2;
// block-GS here -> psi_coarse = e_k). The raw copy in runMG happens AFTER this.
AggregatesGCR.GlobalOrthonormalise();
// AggregatesGCR.Orthogonalise();
std::cout << GridLogMessage << "Subspace loaded, globally orthonormalised (raw block basis preserved)." << std::endl;
} else {
std::cout << GridLogMessage << "*** GCR subspace generation ***" << std::endl;
AggregatesGCR.CreateSubspaceGCR(RNG5,PVdagM,nbasis);
std::cout << GridLogMessage << "Subspace generation: PVdagM operator uses:" << std::endl;
PVdagM.getApplications();
PVdagM.clear();
saveSubspace(AggregatesGCR.subspace, subspace_file);
std::cout << GridLogMessage << "Subspace saved to: " << subspace_file << std::endl;
}
runMG<nbasis,PVdagM_t,ShiftedPVdagM_t,Subspace,LittleDiracOperator,CoarseVector,TwoLevelMG>(
FGrid,
Coarse5d,
CoarseCoarse5d,
geom,
PVdagM,
ShiftedPVdagM,
AggregatesGCR
);
std::cout << GridLogMessage << "Done" << std::endl;
Grid_finalize();
return 0;
}
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/*************************************************************************************
Grid physics library, www.github.com/paboyle/Grid
Source file: ./examples/Example_pvdagm_3level.cc
Copyright (C) 2023
Author: Peter Boyle <paboyle@ph.ed.ac.uk>
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
See the full license in the file "LICENSE" in the top level distribution directory
*************************************************************************************/
/* END LEGAL */
#include <Grid/Grid.h>
#include <Grid/lattice/PaddedCell.h>
#include <Grid/stencil/GeneralLocalStencil.h>
#include <Grid/algorithms/iterative/PrecGeneralisedConjugateResidual.h>
#include <Grid/algorithms/iterative/PrecGeneralisedConjugateResidualNonHermitian.h>
#include <Grid/algorithms/iterative/BiCGSTAB.h>
using namespace std;
using namespace Grid;
template <class T> void readFile(T& out, std::string const fname){
#ifdef HAVE_LIME
std::cout << Grid::GridLogMessage << "Reading: " << fname << std::endl;
Grid::emptyUserRecord record;
Grid::ScidacReader SR;
SR.open(fname);
SR.readScidacFieldRecord(out, record);
SR.close();
#endif
}
template <class T> void writeFile(T& in, std::string const fname){
#ifdef HAVE_LIME
std::cout << Grid::GridLogMessage << "Writing: " << fname << std::endl;
Grid::emptyUserRecord record;
Grid::ScidacWriter SW(in.Grid()->IsBoss());
SW.open(fname);
SW.writeScidacFieldRecord(in, record);
SW.close();
#endif
}
template <class Field>
void saveSubspace(std::vector<Field> &subspace, std::string const fname){
#ifdef HAVE_LIME
std::cout << Grid::GridLogMessage << "Saving subspace (" << subspace.size() << " vectors) to: " << fname << std::endl;
Grid::emptyUserRecord record;
Grid::ScidacWriter SW(subspace[0].Grid()->IsBoss());
SW.open(fname);
for (int k = 0; k < (int)subspace.size(); k++)
SW.writeScidacFieldRecord(subspace[k], record);
SW.close();
#endif
}
template <class Field>
void loadSubspace(std::vector<Field> &subspace, std::string const fname){
#ifdef HAVE_LIME
std::cout << Grid::GridLogMessage << "Loading subspace (" << subspace.size() << " vectors) from: " << fname << std::endl;
Grid::emptyUserRecord record;
Grid::ScidacReader SR;
SR.open(fname);
for (int k = 0; k < (int)subspace.size(); k++)
SR.readScidacFieldRecord(subspace[k], record);
SR.close();
#endif
}
template<class Matrix,class Field>
class PVdagMLinearOperator : public LinearOperatorBase<Field> {
Matrix &_Mat;
Matrix &_PV;
int nApp;
int nAppDag;
public:
PVdagMLinearOperator(Matrix &Mat,Matrix &PV): _Mat(Mat),_PV(PV), nApp(0), nAppDag(0) {};
void OpDiag (const Field &in, Field &out) { assert(0); }
void OpDir (const Field &in, Field &out,int dir,int disp) { assert(0); }
void OpDirAll (const Field &in, std::vector<Field> &out){ assert(0); };
void Op (const Field &in, Field &out){
Field tmp(in.Grid());
_Mat.M(in,tmp);
_PV.Mdag(tmp,out);
nApp++;
}
void AdjOp (const Field &in, Field &out){
Field tmp(in.Grid());
_PV.M(in,tmp);
_Mat.Mdag(tmp,out);
nAppDag++;
}
void clear() { nApp = 0; nAppDag = 0; }
void getApplications() {
std::cout << GridLogMessage << "# applications of PVdagM: " << nApp << std::endl;
std::cout << GridLogMessage << "# applications of PVdagM^dag: " << nAppDag << std::endl;
std::cout << GridLogMessage << "# applications total: " << nApp + nAppDag << std::endl;
}
void HermOpAndNorm(const Field &in, Field &out,RealD &n1,RealD &n2){
HermOp(in,out);
ComplexD dot = innerProduct(in,out);
n1=real(dot);
n2=norm2(out);
}
void HermOp(const Field &in, Field &out){
Field tmp(in.Grid());
Op(in,tmp);
AdjOp(tmp,out);
}
};
template<class Matrix,class Field>
class MdagPVLinearOperator : public LinearOperatorBase<Field> {
Matrix &_Mat;
Matrix &_PV;
public:
MdagPVLinearOperator(Matrix &Mat,Matrix &PV): _Mat(Mat),_PV(PV){};
void OpDiag (const Field &in, Field &out) { assert(0); }
void OpDir (const Field &in, Field &out,int dir,int disp) { assert(0); }
void OpDirAll (const Field &in, std::vector<Field> &out){ assert(0); };
void Op (const Field &in, Field &out){
Field tmp(in.Grid());
_PV.M(in,tmp);
_Mat.Mdag(tmp,out);
}
void AdjOp (const Field &in, Field &out){
Field tmp(in.Grid());
_Mat.M(in,tmp);
_PV.Mdag(tmp,out);
}
void HermOpAndNorm(const Field &in, Field &out,RealD &n1,RealD &n2){
ComplexD dot = innerProduct(in,out);
n1=real(dot);
n2=norm2(out);
}
void HermOp(const Field &in, Field &out){
Field tmp(in.Grid());
Op(in,tmp);
AdjOp(tmp,out);
}
};
template<class Matrix,class Field>
class ShiftedPVdagMLinearOperator : public LinearOperatorBase<Field> {
Matrix &_Mat;
Matrix &_PV;
RealD shift;
public:
ShiftedPVdagMLinearOperator(RealD _shift,Matrix &Mat,Matrix &PV): shift(_shift),_Mat(Mat),_PV(PV){};
void OpDiag (const Field &in, Field &out) { assert(0); }
void OpDir (const Field &in, Field &out,int dir,int disp) { assert(0); }
void OpDirAll (const Field &in, std::vector<Field> &out){ assert(0); };
void Op (const Field &in, Field &out){
Field tmp(in.Grid());
_Mat.M(in,tmp);
_PV.Mdag(tmp,out);
out = out + shift * in;
}
void AdjOp (const Field &in, Field &out){
Field tmp(in.Grid());
_PV.M(tmp,out);
_Mat.Mdag(in,tmp);
out = out + shift * in;
}
void HermOpAndNorm(const Field &in, Field &out,RealD &n1,RealD &n2){ assert(0); }
void HermOp(const Field &in, Field &out){
Field tmp(in.Grid());
Op(in,tmp);
AdjOp(tmp,out);
}
};
template<class Fobj,class CComplex,int nbasis>
class MGPreconditioner : public LinearFunction< Lattice<Fobj> > {
public:
using LinearFunction<Lattice<Fobj> >::operator();
typedef Aggregation<Fobj,CComplex,nbasis> Aggregates;
typedef typename Aggregation<Fobj,CComplex,nbasis>::FineField FineField;
typedef typename Aggregation<Fobj,CComplex,nbasis>::CoarseVector CoarseVector;
typedef typename Aggregation<Fobj,CComplex,nbasis>::CoarseMatrix CoarseMatrix;
typedef LinearOperatorBase<FineField> FineOperator;
typedef LinearFunction <FineField> FineSmoother;
typedef LinearOperatorBase<CoarseVector> CoarseOperator;
typedef LinearFunction <CoarseVector> CoarseSolver;
Aggregates & _Aggregates;
FineOperator & _FineOperator;
FineSmoother & _PreSmoother;
FineSmoother & _PostSmoother;
CoarseOperator & _CoarseOperator;
CoarseSolver & _CoarseSolve;
CoarseSolver & _CoarseGuesser;
std::string _name;
int level; void Level(int lv) {level = lv; };
MGPreconditioner(Aggregates &Agg,
FineOperator &Fine,
FineSmoother &PreSmoother,
FineSmoother &PostSmoother,
CoarseOperator &CoarseOperator_,
CoarseSolver &CoarseSolve_,
CoarseSolver &CoarseGuesser_,
std::string name = std::string("unnamed"))
: _Aggregates(Agg),
_FineOperator(Fine),
_PreSmoother(PreSmoother),
_PostSmoother(PostSmoother),
_CoarseOperator(CoarseOperator_),
_CoarseSolve(CoarseSolve_),
_CoarseGuesser(CoarseGuesser_),
_name(name),
level(1) { }
virtual void operator()(const FineField &in, FineField & out)
{
GridBase *CoarseGrid = _Aggregates.CoarseGrid;
CoarseVector Csrc(CoarseGrid);
CoarseVector Csol(CoarseGrid);
FineField vec1(in.Grid());
FineField vec2(in.Grid());
double t;
out = Zero();
t=-usecond();
_PreSmoother(in,out);
t+=usecond();
std::cout<<GridLogMessage << _name << "PreSmoother took "<< t/1000.0<< "ms" <<std::endl;
_FineOperator.Op(out,vec1); sub(vec1, in ,vec1);
t=-usecond();
_Aggregates.ProjectToSubspace(Csrc,vec1);
t+=usecond();
std::cout<<GridLogMessage << "Project to coarse took "<< t/1000.0<< "ms" <<std::endl;
t=-usecond();
_CoarseGuesser(Csrc,Csol);
_CoarseSolve(Csrc,Csol);
t+=usecond();
std::cout<<GridLogMessage << "Coarse solve took "<< t/1000.0<< "ms" <<std::endl;
t=-usecond();
_Aggregates.PromoteFromSubspace(Csol,vec1);
add(out,out,vec1);
t+=usecond();
std::cout<<GridLogMessage << _name << "Promote to this level took "<< t/1000.0<< "ms" <<std::endl;
_FineOperator.Op(out,vec1); sub(vec1 ,in , vec1);
t=-usecond();
vec2=Zero();
_PostSmoother(vec1,vec2);
t+=usecond();
std::cout<<GridLogMessage << _name <<"PostSmoother took "<< t/1000.0<< "ms" <<std::endl;
add(out,out,vec2);
}
};
// Generic shifted linear operator: wraps any LinearOperatorBase and adds shift*I.
// Used to condition the coarse-level GCR smoother, analogous to ShiftedPVdagMLinearOperator
// at the fine level.
template<class Field>
class ShiftedLinearOperator : public LinearOperatorBase<Field> {
LinearOperatorBase<Field> &_Op;
RealD shift;
public:
ShiftedLinearOperator(RealD _shift, LinearOperatorBase<Field> &Op) : shift(_shift), _Op(Op) {}
void OpDiag (const Field &in, Field &out) { assert(0); }
void OpDir (const Field &in, Field &out, int dir, int disp) { assert(0); }
void OpDirAll (const Field &in, std::vector<Field> &out) { assert(0); }
void Op (const Field &in, Field &out) { _Op.Op(in, out); out = out + shift * in; }
void AdjOp (const Field &in, Field &out) { _Op.AdjOp(in, out); out = out + shift * in; }
void HermOpAndNorm(const Field &in, Field &out, RealD &n1, RealD &n2) { assert(0); }
void HermOp (const Field &in, Field &out) { Field tmp(in.Grid()); Op(in,tmp); AdjOp(tmp,out); }
};
template<int NB, class PVdagM_t, class ShiftedPVdagM_t, class Subspace, class LittleDiracOperator, class CoarseVector, class TwoLevelMG>
void runMG(
GridCartesian *FGrid,
GridCartesian *Coarse5d,
GridCartesian *CoarseCoarse5d,
NextToNearestStencilGeometry5D geom,
PVdagM_t &PVdagM,
ShiftedPVdagM_t &ShiftedPVdagM,
Subspace &AggregatesPD
) {
std::vector<LatticeFermion> subspace = AggregatesPD.subspace;
assert((int)subspace.size() == NB);
const int nbasis = NB;
const int cb = 0;
CoarseVector c_src(Coarse5d);
CoarseVector c_res(Coarse5d);
Complex one(1.0);
LatticeFermionD f_src(FGrid);
LatticeFermionD f_res(FGrid);
TrivialPrecon<CoarseVector> simpleC;
TrivialPrecon<LatticeFermionD> simple_fine;
//////////////////////////////////////////////////////////////////////
// Level 0→1: coarsen PVdagM, build LinOpCoarse
//////////////////////////////////////////////////////////////////////
LittleDiracOperator LittleDiracOpPV(geom, FGrid, Coarse5d);
LittleDiracOpPV.CoarsenOperator(PVdagM, AggregatesPD);
NonHermitianLinearOperator<LittleDiracOperator,CoarseVector> LinOpCoarse(LittleDiracOpPV);
//////////////////////////////////////////////////////////////////////
// Baseline: plain PGCR on LinOpCoarse (reference for comparison)
//////////////////////////////////////////////////////////////////////
std::cout<<GridLogMessage<<"*******************************************"<<std::endl;
std::cout<<GridLogMessage<<" Level 1 solve: plain PGCR baseline"<<std::endl;
std::cout<<GridLogMessage<<"*******************************************"<<std::endl;
PrecGeneralisedConjugateResidualNonHermitian<CoarseVector> L2PGCR_baseline(3.0e-2,1100,LinOpCoarse,simpleC,10,10);
L2PGCR_baseline.Level(2);
c_src = one;
c_res = Zero();
L2PGCR_baseline(c_src,c_res);
PVdagM.getApplications();
PVdagM.clear();
//////////////////////////////////////////////////////////////////////
// psi_coarse: coarse projections of pre-GS fine null vectors.
// These are the Level 1 near-null vectors, promoted from Level 0.
// Used as the aggregation basis for Level 1→2 coarsening.
//////////////////////////////////////////////////////////////////////
std::vector<CoarseVector> psi_coarse(nbasis, Coarse5d);
for (int k = 0; k < nbasis; k++)
AggregatesPD.ProjectToSubspace(psi_coarse[k], subspace[k]);
//////////////////////////////////////////////////////////////////////
// Diagnostics: W (fine projected matrix) and C (Galerkin check)
//////////////////////////////////////////////////////////////////////
{
Eigen::MatrixXcd W = Eigen::MatrixXcd::Zero(nbasis, nbasis);
LatticeFermion ftmp(FGrid);
for (int j = 0; j < nbasis; j++) {
PVdagM.Op(subspace[j], ftmp);
for (int i = 0; i < nbasis; i++)
W(i,j) = TensorRemove(innerProduct(subspace[i], ftmp));
}
RealD normW = W.norm();
std::cout << GridLogMessage << "Fine projected matrix ||W|| = " << normW << std::endl;
Eigen::MatrixXcd C = Eigen::MatrixXcd::Zero(nbasis, nbasis);
CoarseVector Ac(Coarse5d);
for (int l = 0; l < nbasis; l++) {
LinOpCoarse.Op(psi_coarse[l], Ac);
for (int k = 0; k < nbasis; k++)
C(k,l) = TensorRemove(innerProduct(psi_coarse[k], Ac));
}
RealD normC = C.norm();
RealD normCmCdag = (C - C.adjoint()).norm();
std::cout << GridLogMessage << "Coarse null matrix ||C|| = " << normC << std::endl;
std::cout << GridLogMessage << "Coarse null matrix ||C - C†||/||C|| = " << normCmCdag/normC << std::endl;
std::cout << GridLogMessage << "Galerkin check ||C||/||W|| = " << normC/normW << std::endl;
}
//////////////////////////////////////////////////////////////////////
// Level 1→2: set up aggregation using psi_coarse as subspace.
// Block factor 2,2,3,2 (removes odd local sublattice in z given MPI
// geometry 3×6×4×4 where z-local at Level 1 is 6).
// psi_coarse are assigned directly; CoarsenOperator performs
// block-GS orthogonalisation before building LinOpCoarseCoarse.
//////////////////////////////////////////////////////////////////////
// innerProduct(CoarseSiteObj, CoarseSiteObj) returns iScalar<vTComplex>, so CComplex
// for the L1→L2 level must be iScalar<vTComplex>, not vTComplex.
typedef typename CoarseVector::vector_object CoarseSiteObj;
typedef iScalar<vTComplex> vTTComplex;
typedef GeneralCoarsenedMatrix<CoarseSiteObj,vTTComplex,NB> LittleDiracOperatorL2;
typedef typename LittleDiracOperatorL2::CoarseVector CoarseCoarseVector;
typedef Aggregation<CoarseSiteObj,vTTComplex,NB> SubspaceL2;
typedef MGPreconditioner<CoarseSiteObj,vTTComplex,NB> L1to2MG;
SubspaceL2 AggregatesL2(CoarseCoarse5d, Coarse5d, cb);
for (int k = 0; k < nbasis; k++)
AggregatesL2.subspace[k] = psi_coarse[k];
NextToNearestStencilGeometry5D geom2(CoarseCoarse5d);
LittleDiracOperatorL2 LittleDiracOpL2(geom2, Coarse5d, CoarseCoarse5d);
LittleDiracOpL2.CoarsenOperator(LinOpCoarse, AggregatesL2);
NonHermitianLinearOperator<LittleDiracOperatorL2,CoarseCoarseVector> LinOpCC(LittleDiracOpL2);
//////////////////////////////////////////////////////////////////////
// Level 2 solver: plain GCR, no further coarsening
//////////////////////////////////////////////////////////////////////
TrivialPrecon<CoarseCoarseVector> simpleCC;
// L3PGCR is an inner solver inside the L1→2 V-cycle; does not need to converge
// to fine-grid precision. Loose tolerance (3e-2) and large restart (64) to allow
// the Krylov space to span enough of the near-null spectrum of LinOpCC per cycle.
PrecGeneralisedConjugateResidualNonHermitian<CoarseCoarseVector> L3PGCR(1.0e-4,5,LinOpCC,simpleCC,64,64);
L3PGCR.Level(3);
//////////////////////////////////////////////////////////////////////
// Coarse-level GCR smoother for Level 1→2 V-cycle.
// Mirrors fine-grid SmootherGCR: shifted operator + fixed step count.
// coarse_smoother_shift and coarse_smoother_nstep are the tuning knobs.
//////////////////////////////////////////////////////////////////////
RealD coarse_smoother_shift = 0.0;
int coarse_smoother_nstep = 8;
if(getenv("coarse_smoother_shift")) coarse_smoother_shift = atof(getenv("coarse_smoother_shift"));
if(getenv("coarse_smoother_nstep")) coarse_smoother_nstep = atoi(getenv("coarse_smoother_nstep"));
ShiftedLinearOperator<CoarseVector> ShiftedLinOpCoarse(coarse_smoother_shift, LinOpCoarse);
PrecGeneralisedConjugateResidualNonHermitian<CoarseVector> CoarseSmootherGCR(0.0,1,ShiftedLinOpCoarse,simpleC,coarse_smoother_nstep,coarse_smoother_nstep);
CoarseSmootherGCR.Level(2);
//////////////////////////////////////////////////////////////////////
// Level 1→2 V-cycle preconditioner.
//////////////////////////////////////////////////////////////////////
L1to2MG L1to2Precon(AggregatesL2,
LinOpCoarse,
simpleC, // no pre-smoother (matches fine-grid setup)
CoarseSmootherGCR, // post-smoother: 12 GCR steps
LinOpCC,
L3PGCR,
simpleCC,
std::string("LinOpC"));
//////////////////////////////////////////////////////////////////////
// Standalone Level 1 two-level solve test.
// Compare against plain PGCR baseline above.
//////////////////////////////////////////////////////////////////////
std::cout<<GridLogMessage<<"*******************************************"<<std::endl;
std::cout<<GridLogMessage<<" Level 1 solve: two-level MG preconditioned PGCR"<<std::endl;
std::cout<<GridLogMessage<<"*******************************************"<<std::endl;
PrecGeneralisedConjugateResidualNonHermitian<CoarseVector> L2MGsolver(3.0e-2,200,LinOpCoarse,L1to2Precon,16,16);
L2MGsolver.Level(2);
c_res = Zero();
L2MGsolver(c_src,c_res);
std::cout << GridLogMessage << "Level 1 two-level test: PVdagM operator uses:" << std::endl;
PVdagM.getApplications();
PVdagM.clear();
//////////////////////////////////////////////////////////////////////
// Full three-level outer solve
//////////////////////////////////////////////////////////////////////
std::cout<<GridLogMessage<<"*******************************************"<<std::endl;
std::cout<<GridLogMessage<<" Three-level outer solve"<<std::endl;
std::cout<<GridLogMessage<<"*******************************************"<<std::endl;
PrecGeneralisedConjugateResidualNonHermitian<LatticeFermionD> SmootherGCR(0.00,1,ShiftedPVdagM,simple_fine,16,16);
SmootherGCR.Level(1);
f_src = one;
// Pre-smoother: none (TrivialPrecon); post-smoother: shifted PGCR.
// Coarse solver: L2MGsolver (PGCR preconditioned by Level 1→2 V-cycle).
TwoLevelMG ThreeLevelPrecon(AggregatesPD,
PVdagM,
simple_fine,
SmootherGCR,
LinOpCoarse,
L2MGsolver,
simpleC,
std::string("PVdagM"));
PrecGeneralisedConjugateResidualNonHermitian<LatticeFermion> L1PGCR(1.0e-8,1000,PVdagM,ThreeLevelPrecon,16,16);
L1PGCR.Level(1);
f_res = Zero();
L1PGCR(f_src,f_res);
std::cout << GridLogMessage << "Three-level outer solve: PVdagM operator uses:" << std::endl;
PVdagM.getApplications();
PVdagM.clear();
}
int main (int argc, char ** argv)
{
Grid_init(&argc,&argv);
const int Ls = 24;
RealD M5 = 1.8;
RealD b = 1.5;
RealD c = 0.5;
RealD mass = 0.00078;
if ( getenv("MASS") ) mass = atof(getenv("MASS"));
const int nbasis = 60;
std::cout << GridLogMessage << "Mass: " << mass << ", Ls: " << Ls << ", b=" << b << ", c=" << c << std::endl;
std::cout << GridLogMessage << "nbasis: " << nbasis << std::endl;
std::vector<int> lat_size {48, 48, 48, 96};
GridCartesian * UGrid = SpaceTimeGrid::makeFourDimGrid(lat_size, GridDefaultSimd(Nd,vComplex::Nsimd()),GridDefaultMpi());
GridRedBlackCartesian * UrbGrid = SpaceTimeGrid::makeFourDimRedBlackGrid(UGrid);
GridCartesian * FGrid = SpaceTimeGrid::makeFiveDimGrid(Ls,UGrid);
GridRedBlackCartesian * FrbGrid = SpaceTimeGrid::makeFiveDimRedBlackGrid(Ls,UGrid);
// Level 1 coarse grid: block 2^4 from fine (48×48×48×96 → 24×24×24×48, Ls=1)
Coordinate clatt = lat_size;
for (int d = 0; d < 4; d++) clatt[d] /= 2;
std::cout << GridLogMessage << "Level 1 coarse lattice: " << clatt << std::endl;
GridCartesian *Coarse4d = SpaceTimeGrid::makeFourDimGrid(clatt, GridDefaultSimd(Nd,vComplex::Nsimd()),GridDefaultMpi());
GridCartesian *Coarse5d = SpaceTimeGrid::makeFiveDimGrid(1,Coarse4d);
// Level 2 coarse-coarse grid: block 2,2,3,3 from Level 1 (24×24×24×48 → 12×12×8×16, Ls=1).
// MPI geometry 3.6.4.4 (288 ranks): fine local {16,8,12,24}.
// Level 1 local {8,4,6,12}; Level 2 local {4,2,2,4}.
// z blocked by 3: z-Level1-local=6; 6/3=2 (even), 6/2=3 (odd) → must use 3.
// t blocked by 3: t-Level1-local=12; 12/3=4 divisible by Nsimd=4 (gen-simd-width=64).
// t-block=2 gives t2-local=6, 6 mod 4 ≠ 0, fails Grid SIMD assertion. ✓
// With {4,2,2,4}: Nsimd=4 goes into x or t (both =4). ✓
Coordinate clatt2 = clatt;
clatt2[0] /= 2;
clatt2[1] /= 2;
clatt2[2] /= 3;
clatt2[3] /= 3;
std::cout << GridLogMessage << "Level 2 coarse-coarse lattice: " << clatt2 << std::endl;
GridCartesian *CoarseCoarse4d = SpaceTimeGrid::makeFourDimGrid(clatt2, GridDefaultSimd(Nd,vComplex::Nsimd()),GridDefaultMpi());
GridCartesian *CoarseCoarse5d = SpaceTimeGrid::makeFiveDimGrid(1,CoarseCoarse4d);
std::vector<int> seeds4({1,2,3,4});
std::vector<int> seeds5({5,6,7,8});
GridParallelRNG RNG5(FGrid); RNG5.SeedFixedIntegers(seeds5);
GridParallelRNG RNG4(UGrid); RNG4.SeedFixedIntegers(seeds4);
LatticeGaugeField Umu(UGrid);
std::cout << GridLogMessage << "Reading gauge field" << std::endl;
FieldMetaData header;
std::string file("/ccs/home/poare/ckpoint_lat.1000");
NerscIO::readConfiguration(Umu,header,file);
RealD b_ = 1.5;
RealD c_ = 0.5;
RealD madj = 1.0;
if ( getenv("MADJ") ) madj=atof(getenv("MADJ"));
std::cout << "PV mass set to "<<madj<<std::endl;
MobiusFermionD Ddwf(Umu,*FGrid,*FrbGrid,*UGrid,*UrbGrid,mass,M5,b_,c_);
MobiusFermionD Dpv (Umu,*FGrid,*FrbGrid,*UGrid,*UrbGrid,madj, M5,b_,c_);
typedef PVdagMLinearOperator<MobiusFermionD,LatticeFermionD> PVdagM_t;
typedef ShiftedPVdagMLinearOperator<MobiusFermionD,LatticeFermionD> ShiftedPVdagM_t;
typedef GeneralCoarsenedMatrix<vSpinColourVector,vTComplex,nbasis> LittleDiracOperator;
typedef LittleDiracOperator::CoarseVector CoarseVector;
typedef Aggregation<vSpinColourVector,vTComplex,nbasis> Subspace;
typedef MGPreconditioner<vSpinColourVector,vTComplex,nbasis> TwoLevelMG;
PVdagM_t PVdagM(Ddwf,Dpv);
ShiftedPVdagM_t ShiftedPVdagM(0.00,Ddwf,Dpv);
NextToNearestStencilGeometry5D geom(Coarse5d);
// Subspace cache: save after generation, reload on subsequent runs to skip expensive setup.
// Set SUBSPACE_FILE to override the default path.
std::string subspace_file = "/lustre/orion/phy157/proj-shared/phy157_dwf/paboyle/subspace_nb"
+ std::to_string(nbasis) + ".scidac";
if ( getenv("SUBSPACE_FILE") ) subspace_file = std::string(getenv("SUBSPACE_FILE"));
// Check if subspace file exists (boss rank checks, result broadcast via GlobalSum).
uint64_t file_exists = 0;
if ( UGrid->IsBoss() ) {
std::ifstream f(subspace_file);
file_exists = f.good() ? 1 : 0;
}
UGrid->GlobalSum(file_exists);
const int cb = 0;
Subspace AggregatesGCR(Coarse5d,FGrid,cb);
if ( file_exists ) {
std::cout << GridLogMessage << "*** Loading subspace from disk ***" << std::endl;
loadSubspace(AggregatesGCR.subspace, subspace_file);
// Re-orthogonalise after loading to ensure block-GS condition holds.
// AggregatesGCR.Orthogonalise();
std::cout << GridLogMessage << "Subspace loaded and re-orthogonalised." << std::endl;
} else {
std::cout << GridLogMessage << "*** GCR subspace generation ***" << std::endl;
AggregatesGCR.CreateSubspaceGCR(RNG5,PVdagM,nbasis);
std::cout << GridLogMessage << "Subspace generation: PVdagM operator uses:" << std::endl;
PVdagM.getApplications();
PVdagM.clear();
saveSubspace(AggregatesGCR.subspace, subspace_file);
std::cout << GridLogMessage << "Subspace saved to: " << subspace_file << std::endl;
}
runMG<nbasis,PVdagM_t,ShiftedPVdagM_t,Subspace,LittleDiracOperator,CoarseVector,TwoLevelMG>(
FGrid,
Coarse5d,
CoarseCoarse5d,
geom,
PVdagM,
ShiftedPVdagM,
AggregatesGCR
);
std::cout << GridLogMessage << "Done" << std::endl;
Grid_finalize();
return 0;
}
+798
View File
@@ -0,0 +1,798 @@
/*************************************************************************************
Grid physics library, www.github.com/paboyle/Grid
Source file: ./examples/Example_pvdagm_3level.cc
Copyright (C) 2023
Author: Peter Boyle <paboyle@ph.ed.ac.uk>
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
See the full license in the file "LICENSE" in the top level distribution directory
*************************************************************************************/
/* END LEGAL */
#include <Grid/Grid.h>
#include <Grid/lattice/PaddedCell.h>
#include <Grid/stencil/GeneralLocalStencil.h>
#include <Grid/algorithms/iterative/PrecGeneralisedConjugateResidual.h>
#include <Grid/algorithms/iterative/PrecGeneralisedConjugateResidualNonHermitian.h>
#include <Grid/algorithms/iterative/BiCGSTAB.h>
using namespace std;
using namespace Grid;
template <class T> void readFile(T& out, std::string const fname){
#ifdef HAVE_LIME
std::cout << Grid::GridLogMessage << "Reading: " << fname << std::endl;
Grid::emptyUserRecord record;
Grid::ScidacReader SR;
SR.open(fname);
SR.readScidacFieldRecord(out, record);
SR.close();
#endif
}
template <class T> void writeFile(T& in, std::string const fname){
#ifdef HAVE_LIME
std::cout << Grid::GridLogMessage << "Writing: " << fname << std::endl;
Grid::emptyUserRecord record;
Grid::ScidacWriter SW(in.Grid()->IsBoss());
SW.open(fname);
SW.writeScidacFieldRecord(in, record);
SW.close();
#endif
}
template <class Field>
void saveSubspace(std::vector<Field> &subspace, std::string const fname){
#ifdef HAVE_LIME
std::cout << Grid::GridLogMessage << "Saving subspace (" << subspace.size() << " vectors) to: " << fname << std::endl;
Grid::emptyUserRecord record;
Grid::ScidacWriter SW(subspace[0].Grid()->IsBoss());
SW.open(fname);
for (int k = 0; k < (int)subspace.size(); k++)
SW.writeScidacFieldRecord(subspace[k], record);
SW.close();
#endif
}
template <class Field>
void loadSubspace(std::vector<Field> &subspace, std::string const fname){
#ifdef HAVE_LIME
std::cout << Grid::GridLogMessage << "Loading subspace (" << subspace.size() << " vectors) from: " << fname << std::endl;
Grid::emptyUserRecord record;
Grid::ScidacReader SR;
SR.open(fname);
for (int k = 0; k < (int)subspace.size(); k++)
SR.readScidacFieldRecord(subspace[k], record);
SR.close();
#endif
}
template<class Matrix,class Field>
class PVdagMLinearOperator : public LinearOperatorBase<Field> {
Matrix &_Mat;
Matrix &_PV;
int nApp;
int nAppDag;
public:
PVdagMLinearOperator(Matrix &Mat,Matrix &PV): _Mat(Mat),_PV(PV), nApp(0), nAppDag(0) {};
void OpDiag (const Field &in, Field &out) { assert(0); }
void OpDir (const Field &in, Field &out,int dir,int disp) { assert(0); }
void OpDirAll (const Field &in, std::vector<Field> &out){ assert(0); };
void Op (const Field &in, Field &out){
Field tmp(in.Grid());
_Mat.M(in,tmp);
_PV.Mdag(tmp,out);
nApp++;
}
void AdjOp (const Field &in, Field &out){
Field tmp(in.Grid());
_PV.M(in,tmp);
_Mat.Mdag(tmp,out);
nAppDag++;
}
void clear() { nApp = 0; nAppDag = 0; }
void getApplications() {
std::cout << GridLogMessage << "# applications of PVdagM: " << nApp << std::endl;
std::cout << GridLogMessage << "# applications of PVdagM^dag: " << nAppDag << std::endl;
std::cout << GridLogMessage << "# applications total: " << nApp + nAppDag << std::endl;
}
void HermOpAndNorm(const Field &in, Field &out,RealD &n1,RealD &n2){
HermOp(in,out);
ComplexD dot = innerProduct(in,out);
n1=real(dot);
n2=norm2(out);
}
void HermOp(const Field &in, Field &out){
Field tmp(in.Grid());
Op(in,tmp);
AdjOp(tmp,out);
}
};
template<class Matrix,class Field>
class MdagPVLinearOperator : public LinearOperatorBase<Field> {
Matrix &_Mat;
Matrix &_PV;
public:
MdagPVLinearOperator(Matrix &Mat,Matrix &PV): _Mat(Mat),_PV(PV){};
void OpDiag (const Field &in, Field &out) { assert(0); }
void OpDir (const Field &in, Field &out,int dir,int disp) { assert(0); }
void OpDirAll (const Field &in, std::vector<Field> &out){ assert(0); };
void Op (const Field &in, Field &out){
Field tmp(in.Grid());
_PV.M(in,tmp);
_Mat.Mdag(tmp,out);
}
void AdjOp (const Field &in, Field &out){
Field tmp(in.Grid());
_Mat.M(in,tmp);
_PV.Mdag(tmp,out);
}
void HermOpAndNorm(const Field &in, Field &out,RealD &n1,RealD &n2){
ComplexD dot = innerProduct(in,out);
n1=real(dot);
n2=norm2(out);
}
void HermOp(const Field &in, Field &out){
Field tmp(in.Grid());
Op(in,tmp);
AdjOp(tmp,out);
}
};
template<class Matrix,class Field>
class ShiftedPVdagMLinearOperator : public LinearOperatorBase<Field> {
Matrix &_Mat;
Matrix &_PV;
RealD shift;
public:
ShiftedPVdagMLinearOperator(RealD _shift,Matrix &Mat,Matrix &PV): shift(_shift),_Mat(Mat),_PV(PV){};
void OpDiag (const Field &in, Field &out) { assert(0); }
void OpDir (const Field &in, Field &out,int dir,int disp) { assert(0); }
void OpDirAll (const Field &in, std::vector<Field> &out){ assert(0); };
void Op (const Field &in, Field &out){
Field tmp(in.Grid());
_Mat.M(in,tmp);
_PV.Mdag(tmp,out);
out = out + shift * in;
}
void AdjOp (const Field &in, Field &out){
Field tmp(in.Grid());
_PV.M(tmp,out);
_Mat.Mdag(in,tmp);
out = out + shift * in;
}
void HermOpAndNorm(const Field &in, Field &out,RealD &n1,RealD &n2){ assert(0); }
void HermOp(const Field &in, Field &out){
Field tmp(in.Grid());
Op(in,tmp);
AdjOp(tmp,out);
}
};
// Lüscher deflated guesser (arXiv:0706.2298 Sec A.3) for a non-Hermitian solve.
// C_{st} = <psi[s] | LinOp | psi[t]>; guess = sum_s c_s psi[s] where c = C^{-1} psi† src.
template<class Field>
class LuscherGuesser : public LinearFunction<Field> {
const std::vector<Field> &psi;
Eigen::MatrixXcd C_inv;
public:
using LinearFunction<Field>::operator();
LuscherGuesser(const std::vector<Field> &psi_, const Eigen::MatrixXcd &Cinv_)
: psi(psi_), C_inv(Cinv_) {}
virtual void operator()(const Field &src, Field &guess) {
int N = psi.size();
Eigen::VectorXcd b(N);
for (int t = 0; t < N; t++)
b(t) = TensorRemove(innerProduct(psi[t], src));
Eigen::VectorXcd c = C_inv * b;
guess = Zero();
for (int s = 0; s < N; s++)
guess += ComplexD(c(s)) * psi[s];
}
};
template<class Fobj,class CComplex,int nbasis>
class MGPreconditioner : public LinearFunction< Lattice<Fobj> > {
public:
using LinearFunction<Lattice<Fobj> >::operator();
typedef Aggregation<Fobj,CComplex,nbasis> Aggregates;
typedef typename Aggregation<Fobj,CComplex,nbasis>::FineField FineField;
typedef typename Aggregation<Fobj,CComplex,nbasis>::CoarseVector CoarseVector;
typedef typename Aggregation<Fobj,CComplex,nbasis>::CoarseMatrix CoarseMatrix;
typedef LinearOperatorBase<FineField> FineOperator;
typedef LinearFunction <FineField> FineSmoother;
typedef LinearOperatorBase<CoarseVector> CoarseOperator;
typedef LinearFunction <CoarseVector> CoarseSolver;
Aggregates & _Aggregates;
FineOperator & _FineOperator;
FineSmoother & _PreSmoother;
FineSmoother & _PostSmoother;
CoarseOperator & _CoarseOperator;
CoarseSolver & _CoarseSolve;
CoarseSolver & _CoarseGuesser;
int level; void Level(int lv) {level = lv; };
MGPreconditioner(Aggregates &Agg,
FineOperator &Fine,
FineSmoother &PreSmoother,
FineSmoother &PostSmoother,
CoarseOperator &CoarseOperator_,
CoarseSolver &CoarseSolve_,
CoarseSolver &CoarseGuesser_)
: _Aggregates(Agg),
_FineOperator(Fine),
_PreSmoother(PreSmoother),
_PostSmoother(PostSmoother),
_CoarseOperator(CoarseOperator_),
_CoarseSolve(CoarseSolve_),
_CoarseGuesser(CoarseGuesser_),
level(1) { }
virtual void operator()(const FineField &in, FineField & out)
{
GridBase *CoarseGrid = _Aggregates.CoarseGrid;
CoarseVector Csrc(CoarseGrid);
CoarseVector Csol(CoarseGrid);
FineField vec1(in.Grid());
FineField vec2(in.Grid());
double t;
out = Zero();
t=-usecond();
_PreSmoother(in,out);
t+=usecond();
std::cout<<GridLogMessage << "PreSmoother took "<< t/1000.0<< "ms" <<std::endl;
_FineOperator.Op(out,vec1); sub(vec1, in ,vec1);
t=-usecond();
_Aggregates.ProjectToSubspace(Csrc,vec1);
t+=usecond();
std::cout<<GridLogMessage << "Project to coarse took "<< t/1000.0<< "ms" <<std::endl;
t=-usecond();
_CoarseGuesser(Csrc,Csol);
_CoarseSolve(Csrc,Csol);
t+=usecond();
std::cout<<GridLogMessage << "Coarse solve took "<< t/1000.0<< "ms" <<std::endl;
t=-usecond();
_Aggregates.PromoteFromSubspace(Csol,vec1);
add(out,out,vec1);
t+=usecond();
std::cout<<GridLogMessage << "Promote to this level took "<< t/1000.0<< "ms" <<std::endl;
_FineOperator.Op(out,vec1); sub(vec1 ,in , vec1);
t=-usecond();
vec2=Zero();
_PostSmoother(vec1,vec2);
t+=usecond();
std::cout<<GridLogMessage << "PostSmoother took "<< t/1000.0<< "ms" <<std::endl;
add(out,out,vec2);
}
};
// Generic shifted linear operator: wraps any LinearOperatorBase and adds shift*I.
// Used to condition the coarse-level GCR smoother, analogous to ShiftedPVdagMLinearOperator
// at the fine level.
template<class Field>
class ShiftedLinearOperator : public LinearOperatorBase<Field> {
LinearOperatorBase<Field> &_Op;
RealD shift;
public:
ShiftedLinearOperator(RealD _shift, LinearOperatorBase<Field> &Op) : shift(_shift), _Op(Op) {}
void OpDiag (const Field &in, Field &out) { assert(0); }
void OpDir (const Field &in, Field &out, int dir, int disp) { assert(0); }
void OpDirAll (const Field &in, std::vector<Field> &out) { assert(0); }
void Op (const Field &in, Field &out) { _Op.Op(in, out); out = out + shift * in; }
void AdjOp (const Field &in, Field &out) { _Op.AdjOp(in, out); out = out + shift * in; }
void HermOpAndNorm(const Field &in, Field &out, RealD &n1, RealD &n2) { assert(0); }
void HermOp (const Field &in, Field &out) { Field tmp(in.Grid()); Op(in,tmp); AdjOp(tmp,out); }
};
template<int NB, class PVdagM_t, class ShiftedPVdagM_t, class Subspace, class LittleDiracOperator, class CoarseVector, class TwoLevelMG>
void runMG(
GridCartesian *FGrid,
GridCartesian *Coarse5d,
GridCartesian *CoarseCoarse5d,
GridCartesian *CoarseCoarseCoarse5d,
NextToNearestStencilGeometry5D geom,
PVdagM_t &PVdagM,
ShiftedPVdagM_t &ShiftedPVdagM,
Subspace &AggregatesPD
) {
std::vector<LatticeFermion> subspace = AggregatesPD.subspace;
assert((int)subspace.size() == NB);
const int nbasis = NB;
const int cb = 0;
CoarseVector c_src(Coarse5d);
CoarseVector c_res(Coarse5d);
Complex one(1.0);
LatticeFermionD f_src(FGrid);
LatticeFermionD f_res(FGrid);
TrivialPrecon<CoarseVector> simpleC;
TrivialPrecon<LatticeFermionD> simple_fine;
//////////////////////////////////////////////////////////////////////
// Level 0→1: coarsen PVdagM, build LinOpCoarse
//////////////////////////////////////////////////////////////////////
LittleDiracOperator LittleDiracOpPV(geom, FGrid, Coarse5d);
LittleDiracOpPV.CoarsenOperator(PVdagM, AggregatesPD);
NonHermitianLinearOperator<LittleDiracOperator,CoarseVector> LinOpCoarse(LittleDiracOpPV);
//////////////////////////////////////////////////////////////////////
// Baseline: plain PGCR on LinOpCoarse (reference for comparison)
//////////////////////////////////////////////////////////////////////
std::cout<<GridLogMessage<<"*******************************************"<<std::endl;
std::cout<<GridLogMessage<<" Level 1 solve: plain PGCR baseline"<<std::endl;
std::cout<<GridLogMessage<<"*******************************************"<<std::endl;
PrecGeneralisedConjugateResidualNonHermitian<CoarseVector> L2PGCR_baseline(3.0e-2,1100,LinOpCoarse,simpleC,10,10);
L2PGCR_baseline.Level(2);
L2PGCR_baseline.Name("Cbaseline");
c_src = one;
c_res = Zero();
L2PGCR_baseline(c_src,c_res);
//////////////////////////////////////////////////////////////////////
// psi_coarse: coarse projections of pre-GS fine null vectors.
// These are the Level 1 near-null vectors, promoted from Level 0.
// Used as the aggregation basis for Level 1→2 coarsening.
//////////////////////////////////////////////////////////////////////
std::vector<CoarseVector> psi_coarse(nbasis, Coarse5d);
for (int k = 0; k < nbasis; k++)
AggregatesPD.ProjectToSubspace(psi_coarse[k], subspace[k]);
//////////////////////////////////////////////////////////////////////
// Diagnostics: W (fine projected matrix) and C (Galerkin check)
//////////////////////////////////////////////////////////////////////
{
Eigen::MatrixXcd W = Eigen::MatrixXcd::Zero(nbasis, nbasis);
LatticeFermion ftmp(FGrid);
for (int j = 0; j < nbasis; j++) {
PVdagM.Op(subspace[j], ftmp);
for (int i = 0; i < nbasis; i++)
W(i,j) = TensorRemove(innerProduct(subspace[i], ftmp));
}
RealD normW = W.norm();
std::cout << GridLogMessage << "Fine projected matrix ||W|| = " << normW << std::endl;
Eigen::MatrixXcd C = Eigen::MatrixXcd::Zero(nbasis, nbasis);
CoarseVector Ac(Coarse5d);
for (int l = 0; l < nbasis; l++) {
LinOpCoarse.Op(psi_coarse[l], Ac);
for (int k = 0; k < nbasis; k++)
C(k,l) = TensorRemove(innerProduct(psi_coarse[k], Ac));
}
RealD normC = C.norm();
RealD normCmCdag = (C - C.adjoint()).norm();
std::cout << GridLogMessage << "Coarse null matrix ||C|| = " << normC << std::endl;
std::cout << GridLogMessage << "Coarse null matrix ||C - C†||/||C|| = " << normCmCdag/normC << std::endl;
std::cout << GridLogMessage << "Galerkin check ||C||/||W|| = " << normC/normW << std::endl;
}
//////////////////////////////////////////////////////////////////////
// Level 1→2: set up aggregation using psi_coarse as subspace.
// Block factor 2,2,3,2 (removes odd local sublattice in z given MPI
// geometry 3×6×4×4 where z-local at Level 1 is 6).
// psi_coarse are assigned directly; CoarsenOperator performs
// block-GS orthogonalisation before building LinOpCoarseCoarse.
//////////////////////////////////////////////////////////////////////
// innerProduct(CoarseSiteObj, CoarseSiteObj) returns iScalar<vTComplex>, so CComplex
// for the L1→L2 level must be iScalar<vTComplex>, not vTComplex.
typedef typename CoarseVector::vector_object CoarseSiteObj;
typedef iScalar<vTComplex> vTTComplex;
typedef GeneralCoarsenedMatrix<CoarseSiteObj,vTTComplex,NB> LittleDiracOperatorL2;
typedef typename LittleDiracOperatorL2::CoarseVector CoarseCoarseVector;
typedef Aggregation<CoarseSiteObj,vTTComplex,NB> SubspaceL2;
typedef MGPreconditioner<CoarseSiteObj,vTTComplex,NB> L1to2MG;
SubspaceL2 AggregatesL2(CoarseCoarse5d, Coarse5d, cb);
for (int k = 0; k < nbasis; k++)
AggregatesL2.subspace[k] = psi_coarse[k];
NextToNearestStencilGeometry5D geom2(CoarseCoarse5d);
LittleDiracOperatorL2 LittleDiracOpL2(geom2, Coarse5d, CoarseCoarse5d);
LittleDiracOpL2.CoarsenOperator(LinOpCoarse, AggregatesL2);
NonHermitianLinearOperator<LittleDiracOperatorL2,CoarseCoarseVector> LinOpCC(LittleDiracOpL2);
TrivialPrecon<CoarseCoarseVector> simpleCC;
//////////////////////////////////////////////////////////////////////
// Lüscher deflation guesser for L3PGCR.
// Step 1: project psi_coarse[k] (promoted fine null vectors) to
// CoarseCoarseVector space — these cover the zero-momentum
// component of the near-null space of LinOpCC.
// Step 2: breed Nextra additional null vectors directly on LinOpCC
// using GCR with random sources — these pick up near-null
// modes at all spatial frequencies not spanned by step 1.
// Step 3: build C_{st} = <psi_cc[s]|LinOpCC|psi_cc[t]> over the
// full augmented basis and invert directly via Eigen LU.
//////////////////////////////////////////////////////////////////////
std::vector<CoarseCoarseVector> psi_cc(nbasis, CoarseCoarse5d);
for (int k = 0; k < nbasis; k++)
AggregatesL2.ProjectToSubspace(psi_cc[k], psi_coarse[k]);
{
int Nextra = nbasis; // breed as many extra as we have promoted ones
if ( getenv("CC_NEXTRA") ) Nextra = atoi(getenv("CC_NEXTRA"));
GridParallelRNG RNG_CC(CoarseCoarse5d);
RNG_CC.SeedFixedIntegers({11,13,17,19});
PrecGeneralisedConjugateResidualNonHermitian<CoarseCoarseVector>
nullGCR(1e-2, 200, LinOpCC, simpleCC, 32, 32);
CoarseCoarseVector tmp(CoarseCoarse5d);
for (int k = 0; k < Nextra; k++) {
CoarseCoarseVector src(CoarseCoarse5d);
gaussian(RNG_CC, src);
tmp = Zero();
nullGCR(src, tmp);
psi_cc.push_back(tmp);
}
std::cout << GridLogMessage << "LinOpCC deflation basis: " << nbasis
<< " promoted + " << Nextra << " bred = " << psi_cc.size() << " total" << std::endl;
}
const int Naug = psi_cc.size();
Eigen::MatrixXcd Ccc = Eigen::MatrixXcd::Zero(Naug, Naug);
{
CoarseCoarseVector Acc(CoarseCoarse5d);
for (int l = 0; l < Naug; l++) {
LinOpCC.Op(psi_cc[l], Acc);
for (int k = 0; k < Naug; k++)
Ccc(k,l) = TensorRemove(innerProduct(psi_cc[k], Acc));
}
}
{
RealD normCcc = Ccc.norm();
RealD normCccmCdag = (Ccc - Ccc.adjoint()).norm();
std::cout << GridLogMessage << "Coarse-coarse deflation matrix ||Ccc|| = " << normCcc << std::endl;
std::cout << GridLogMessage << "Coarse-coarse deflation matrix ||Ccc-Ccc†||/||Ccc|| = " << normCccmCdag/normCcc << std::endl;
}
Eigen::MatrixXcd Ccc_inv = Ccc.inverse();
LuscherGuesser<CoarseCoarseVector> CCDeflGuesser(psi_cc, Ccc_inv);
//////////////////////////////////////////////////////////////////////
// Level 2→3: coarsen LinOpCC using the RAW promoted psi_cc as aggregation
// to build the Level 4 (coarse-coarse-coarse) operator.
// psi_cc[0..nbasis-1] are the coarse-coarse near-null vectors, projected
// from the RAW psi_coarse (themselves projected from the RAW fine null
// vectors) -- the pre-block-GS chain the whole construction depends on.
// CoarsenOperator block-GS orthogonalises AggregatesL3.subspace IN PLACE,
// so assign COPIES of psi_cc and keep psi_cc itself raw.
//
// Tensor depth deepens once more: innerProduct(CoarseCoarseSiteObj,...) returns
// iScalar<vTTComplex>, so CComplex for the L2→L3 level is iScalar<iScalar<vTComplex>>.
//////////////////////////////////////////////////////////////////////
typedef typename CoarseCoarseVector::vector_object CoarseCoarseSiteObj;
typedef iScalar<vTTComplex> vTTTComplex;
typedef GeneralCoarsenedMatrix<CoarseCoarseSiteObj,vTTTComplex,NB> LittleDiracOperatorL3;
typedef typename LittleDiracOperatorL3::CoarseVector CoarseCoarseCoarseVector;
typedef Aggregation<CoarseCoarseSiteObj,vTTTComplex,NB> SubspaceL3;
typedef MGPreconditioner<CoarseCoarseSiteObj,vTTTComplex,NB> L2to3MG;
SubspaceL3 AggregatesL3(CoarseCoarseCoarse5d, CoarseCoarse5d, cb);
for (int k = 0; k < nbasis; k++)
AggregatesL3.subspace[k] = psi_cc[k]; // raw promoted; COPY, keeps psi_cc raw
NextToNearestStencilGeometry5D geom3(CoarseCoarseCoarse5d);
LittleDiracOperatorL3 LittleDiracOpL3(geom3, CoarseCoarse5d, CoarseCoarseCoarse5d);
LittleDiracOpL3.CoarsenOperator(LinOpCC, AggregatesL3); // block-GS's AggregatesL3.subspace in place
NonHermitianLinearOperator<LittleDiracOperatorL3,CoarseCoarseCoarseVector> LinOpCCC(LittleDiracOpL3);
TrivialPrecon<CoarseCoarseCoarseVector> simpleCCC;
//////////////////////////////////////////////////////////////////////
// Level 4 bottom solve: GCR on a SHIFTED LinOpCCC. This is the one level
// with no IRS shift, and it is the most non-normal (coarsest) operator, so
// the bare bottom GCR wanders in a field of values that wraps the origin and
// its iteration count blows out (observed 5..54 iters to hit 0.2). Solving
// (A_ccc + l4_shift) instead slides the FoV off the origin; the correction is
// only ever a loose 0.2 approximation anyway, so the detuning is free.
// l4_shift defaults to 0.0 => bare LinOpCCC, baseline unchanged until opted in.
//////////////////////////////////////////////////////////////////////
RealD l4_shift = 0.0;
if(getenv("l4_shift")) l4_shift = atof(getenv("l4_shift"));
std::cout << GridLogMessage << "PARAM l4_shift = " << l4_shift << std::endl;
ShiftedLinearOperator<CoarseCoarseCoarseVector> ShiftedLinOpCCC(l4_shift, LinOpCCC);
PrecGeneralisedConjugateResidualNonHermitian<CoarseCoarseCoarseVector> L4PGCR(1.0e-1,200,ShiftedLinOpCCC,simpleCCC,16,16);
L4PGCR.Level(4);
L4PGCR.Name("CCCouter");
//////////////////////////////////////////////////////////////////////
// Level 2→3 V-cycle: depth-2 SHIFTED smoother on LinOpCC + L4 bottom.
// The shift slides the coarse-coarse field of values off the origin so a
// 2-step smoother has something to bite on a non-normal operator (IRS idea).
//////////////////////////////////////////////////////////////////////
RealD cc_smoother_shift = 0.01;
int cc_smoother_nstep = 2;
if(getenv("cc_smoother_shift")) cc_smoother_shift = atof(getenv("cc_smoother_shift"));
if(getenv("cc_smoother_nstep")) cc_smoother_nstep = atoi(getenv("cc_smoother_nstep"));
ShiftedLinearOperator<CoarseCoarseVector> ShiftedLinOpCC(cc_smoother_shift, LinOpCC);
PrecGeneralisedConjugateResidualNonHermitian<CoarseCoarseVector>
CoarseCoarseSmootherGCR(0.01,1,ShiftedLinOpCC,simpleCC,cc_smoother_nstep,cc_smoother_nstep);
CoarseCoarseSmootherGCR.SetZeroGuess(1); // smoother slot: caller zeroes guess
CoarseCoarseSmootherGCR.Level(3);
CoarseCoarseSmootherGCR.Name("CCsmoother");
L2to3MG L2to3Precon(AggregatesL3,
LinOpCC,
simpleCC, // no pre-smoother
CoarseCoarseSmootherGCR, // post-smoother: depth-2 shifted GCR
LinOpCCC,
L4PGCR,
simpleCCC); // trivial guesser at the bottom
//////////////////////////////////////////////////////////////////////
// Level 3 (coarse-coarse) solve: GCR preconditioned by the L2→L3 V-cycle.
// Replaces the plain L3PGCR of the 3-level build -- the coarse-coarse level
// is now smoothed shallowly and recursed rather than solved deeply.
//////////////////////////////////////////////////////////////////////
PrecGeneralisedConjugateResidualNonHermitian<CoarseCoarseVector> L3MGsolver(1.0e-1,200,LinOpCC,L2to3Precon,16,16);
L3MGsolver.Level(3);
L3MGsolver.Name("CCouter");
//////////////////////////////////////////////////////////////////////
// Coarse-level GCR smoother for Level 1→2 V-cycle.
// Mirrors fine-grid SmootherGCR: shifted operator + fixed step count.
// coarse_smoother_shift and coarse_smoother_nstep are the tuning knobs.
//////////////////////////////////////////////////////////////////////
RealD coarse_smoother_shift = 0.01;
int coarse_smoother_nstep = 2; // depth-2 smoother on the coarse level
if(getenv("coarse_smoother_shift")) coarse_smoother_shift = atof(getenv("coarse_smoother_shift"));
if(getenv("coarse_smoother_nstep")) coarse_smoother_nstep = atoi(getenv("coarse_smoother_nstep"));
ShiftedLinearOperator<CoarseVector> ShiftedLinOpCoarse(coarse_smoother_shift, LinOpCoarse);
PrecGeneralisedConjugateResidualNonHermitian<CoarseVector> CoarseSmootherGCR(0.01,1,ShiftedLinOpCoarse,simpleC,coarse_smoother_nstep,coarse_smoother_nstep);
CoarseSmootherGCR.SetZeroGuess(1); // smoother slot: caller zeroes guess
CoarseSmootherGCR.Level(2);
CoarseSmootherGCR.Name("Csmoother");
//////////////////////////////////////////////////////////////////////
// Level 1→2 V-cycle preconditioner.
//////////////////////////////////////////////////////////////////////
L1to2MG L1to2Precon(AggregatesL2,
LinOpCoarse,
simpleC, // no pre-smoother (matches fine-grid setup)
CoarseSmootherGCR, // post-smoother: depth-2 shifted GCR
LinOpCC,
L3MGsolver, // coarse-coarse solve is now the L2→L3 V-cycle
CCDeflGuesser); // Lüscher guesser: psi_cc C^{-1} psi_cc†
//////////////////////////////////////////////////////////////////////
// Standalone Level 1 two-level solve test.
// Compare against plain PGCR baseline above.
//////////////////////////////////////////////////////////////////////
std::cout<<GridLogMessage<<"*******************************************"<<std::endl;
std::cout<<GridLogMessage<<" Level 1 solve: two-level MG preconditioned PGCR"<<std::endl;
std::cout<<GridLogMessage<<"*******************************************"<<std::endl;
PrecGeneralisedConjugateResidualNonHermitian<CoarseVector> L2MGsolver(3.0e-2,200,LinOpCoarse,L1to2Precon,16,16);
L2MGsolver.Level(2);
L2MGsolver.Name("Couter");
c_res = Zero();
L2MGsolver(c_src,c_res);
std::cout << GridLogMessage << "Level 1 two-level test: PVdagM operator uses:" << std::endl;
PVdagM.getApplications();
PVdagM.clear();
//////////////////////////////////////////////////////////////////////
// Full three-level outer solve
//////////////////////////////////////////////////////////////////////
std::cout<<GridLogMessage<<"*******************************************"<<std::endl;
std::cout<<GridLogMessage<<" Three-level outer solve"<<std::endl;
std::cout<<GridLogMessage<<"*******************************************"<<std::endl;
PrecGeneralisedConjugateResidualNonHermitian<LatticeFermionD> SmootherGCR(0.01,1,ShiftedPVdagM,simple_fine,16,16);
SmootherGCR.SetZeroGuess(1); // pre/post smoother slots zero their guess
SmootherGCR.Level(1);
SmootherGCR.Name("Fsmoother");
f_src = one;
// Pre-smoother: none (TrivialPrecon); post-smoother: shifted PGCR.
// Coarse solver: L2MGsolver (PGCR preconditioned by Level 1→2 V-cycle).
TwoLevelMG ThreeLevelPrecon(AggregatesPD,
PVdagM,
simple_fine,
SmootherGCR,
LinOpCoarse,
L2MGsolver,
simpleC);
PrecGeneralisedConjugateResidualNonHermitian<LatticeFermion> L1PGCR(1.0e-8,1000,PVdagM,ThreeLevelPrecon,16,16);
L1PGCR.Level(1);
L1PGCR.Name("Fouter");
f_res = Zero();
L1PGCR(f_src,f_res);
std::cout << GridLogMessage << "Three-level outer solve: PVdagM operator uses:" << std::endl;
PVdagM.getApplications();
PVdagM.clear();
}
int main (int argc, char ** argv)
{
Grid_init(&argc,&argv);
const int Ls = 24;
RealD M5 = 1.8;
RealD b = 1.5;
RealD c = 0.5;
RealD mass = 0.00078;
if ( getenv("MASS") ) mass = atof(getenv("MASS"));
const int nbasis = 60;
std::cout << GridLogMessage << "Mass: " << mass << ", Ls: " << Ls << ", b=" << b << ", c=" << c << std::endl;
std::cout << GridLogMessage << "nbasis: " << nbasis << std::endl;
std::vector<int> lat_size {48, 48, 48, 96};
GridCartesian * UGrid = SpaceTimeGrid::makeFourDimGrid(lat_size, GridDefaultSimd(Nd,vComplex::Nsimd()),GridDefaultMpi());
GridRedBlackCartesian * UrbGrid = SpaceTimeGrid::makeFourDimRedBlackGrid(UGrid);
GridCartesian * FGrid = SpaceTimeGrid::makeFiveDimGrid(Ls,UGrid);
GridRedBlackCartesian * FrbGrid = SpaceTimeGrid::makeFiveDimRedBlackGrid(Ls,UGrid);
// Level 1 coarse grid: block 2^4 from fine (48×48×48×96 → 24×24×24×48, Ls=1)
Coordinate clatt = lat_size;
for (int d = 0; d < 4; d++) clatt[d] /= 2;
std::cout << GridLogMessage << "Level 1 coarse lattice: " << clatt << std::endl;
GridCartesian *Coarse4d = SpaceTimeGrid::makeFourDimGrid(clatt, GridDefaultSimd(Nd,vComplex::Nsimd()),GridDefaultMpi());
GridCartesian *Coarse5d = SpaceTimeGrid::makeFiveDimGrid(1,Coarse4d);
// Level 2 coarse-coarse grid: block 2,2,3,3 from Level 1 (24×24×24×48 → 12×12×8×16, Ls=1).
// MPI geometry 3.6.4.4 (288 ranks): fine local {16,8,12,24}.
// Level 1 local {8,4,6,12}; Level 2 local {4,2,2,4}.
// z blocked by 3: z-Level1-local=6; 6/3=2 (even), 6/2=3 (odd) → must use 3.
// t blocked by 3: t-Level1-local=12; 12/3=4 divisible by Nsimd=4 (gen-simd-width=64).
// t-block=2 gives t2-local=6, 6 mod 4 ≠ 0, fails Grid SIMD assertion. ✓
// With {4,2,2,4}: Nsimd=4 goes into x or t (both =4). ✓
Coordinate clatt2 = clatt;
clatt2[0] /= 2;
clatt2[1] /= 2;
clatt2[2] /= 3;
clatt2[3] /= 3;
std::cout << GridLogMessage << "Level 2 coarse-coarse lattice: " << clatt2 << std::endl;
GridCartesian *CoarseCoarse4d = SpaceTimeGrid::makeFourDimGrid(clatt2, GridDefaultSimd(Nd,vComplex::Nsimd()),GridDefaultMpi());
GridCartesian *CoarseCoarse5d = SpaceTimeGrid::makeFiveDimGrid(1,CoarseCoarse4d);
// Level 3 coarse-coarse-coarse grid: block clatt2 = {12,12,8,16} -> {6,12,8,8}.
// GEOMETRY (mpi 3.6.4.4, Nsimd=4 => SIMD layout {1,1,2,2}, factor 2 on z and t):
// every grid needs z-local and t-local EVEN. clatt2-local is {4,2,2,4}, so
// z-local=2 is already at its minimum even value and CANNOT be blocked (2->1
// is odd and trips the SIMD assertion); y-local=2 would go to 1 (degenerate).
// Only x and t have room, so block {2,1,1,2}: clatt3 {6,12,8,8}, L4-local
// {2,2,2,2} -- all dims even and >=2. z stays unblocked by construction.
Coordinate clatt3 = clatt2;
clatt3[0] /= 2; // x: 12 -> 6 (x-local 4 -> 2)
// clatt3[1] (y) unblocked: y-local 2 -> blocking gives 1 (degenerate)
// clatt3[2] (z) unblocked: z-local 2 is SIMD-pinned even, cannot halve
clatt3[3] /= 2; // t: 16 -> 8 (t-local 4 -> 2)
std::cout << GridLogMessage << "Level 3 coarse-coarse-coarse lattice: " << clatt3 << std::endl;
GridCartesian *CoarseCoarseCoarse4d = SpaceTimeGrid::makeFourDimGrid(clatt3, GridDefaultSimd(Nd,vComplex::Nsimd()),GridDefaultMpi());
GridCartesian *CoarseCoarseCoarse5d = SpaceTimeGrid::makeFiveDimGrid(1,CoarseCoarseCoarse4d);
std::vector<int> seeds4({1,2,3,4});
std::vector<int> seeds5({5,6,7,8});
GridParallelRNG RNG5(FGrid); RNG5.SeedFixedIntegers(seeds5);
GridParallelRNG RNG4(UGrid); RNG4.SeedFixedIntegers(seeds4);
LatticeGaugeField Umu(UGrid);
std::cout << GridLogMessage << "Reading gauge field" << std::endl;
FieldMetaData header;
std::string file("/ccs/home/poare/ckpoint_lat.1000");
NerscIO::readConfiguration(Umu,header,file);
RealD b_ = 1.5;
RealD c_ = 0.5;
MobiusFermionD Ddwf(Umu,*FGrid,*FrbGrid,*UGrid,*UrbGrid,mass,M5,b_,c_);
MobiusFermionD Dpv (Umu,*FGrid,*FrbGrid,*UGrid,*UrbGrid,1.0, M5,b_,c_);
typedef PVdagMLinearOperator<MobiusFermionD,LatticeFermionD> PVdagM_t;
typedef ShiftedPVdagMLinearOperator<MobiusFermionD,LatticeFermionD> ShiftedPVdagM_t;
typedef GeneralCoarsenedMatrix<vSpinColourVector,vTComplex,nbasis> LittleDiracOperator;
typedef LittleDiracOperator::CoarseVector CoarseVector;
typedef Aggregation<vSpinColourVector,vTComplex,nbasis> Subspace;
typedef MGPreconditioner<vSpinColourVector,vTComplex,nbasis> TwoLevelMG;
PVdagM_t PVdagM(Ddwf,Dpv);
ShiftedPVdagM_t ShiftedPVdagM(0.01,Ddwf,Dpv);
NextToNearestStencilGeometry5D geom(Coarse5d);
// Subspace cache: save after generation, reload on subsequent runs to skip expensive setup.
// Set SUBSPACE_FILE to override the default path.
std::string subspace_file = "/lustre/orion/phy157/proj-shared/phy157_dwf/paboyle/subspace_nb"
+ std::to_string(nbasis) + ".scidac";
if ( getenv("SUBSPACE_FILE") ) subspace_file = std::string(getenv("SUBSPACE_FILE"));
// Check if subspace file exists (boss rank checks, result broadcast via GlobalSum).
uint64_t file_exists = 0;
if ( UGrid->IsBoss() ) {
std::ifstream f(subspace_file);
file_exists = f.good() ? 1 : 0;
}
UGrid->GlobalSum(file_exists);
const int cb = 0;
Subspace AggregatesGCR(Coarse5d,FGrid,cb);
if ( file_exists ) {
std::cout << GridLogMessage << "*** Loading subspace from disk ***" << std::endl;
loadSubspace(AggregatesGCR.subspace, subspace_file);
// Insurance: GLOBAL (whole-lattice) orthonormalise, in case the cached file
// predates the GlobalOrthonormalise() that CreateSubspaceGCR now applies
// (Aggregates.h:196). It is span-preserving and makes the vectors globally
// orthonormal -- it is NOT the block Orthogonalise() below, so it does NOT
// cause the psi_coarse->e_k trap. The RAW subspace copy in runMG happens
// AFTER this call, so the raw-null (pre-block-GS) discipline is preserved.
AggregatesGCR.GlobalOrthonormalise();
// DO NOT block-orthogonalise here: runMG copies subspace[] as the RAW
// (pre-block-GS) basis and CoarsenOperator block-GS's it in place later.
// Orthogonalising now defeats the raw-null discipline (psi_coarse -> e_k)
// and poisons L2/L3/L4. See project_block_orthogonalise_leak.
// AggregatesGCR.Orthogonalise();
std::cout << GridLogMessage << "Subspace loaded, globally orthonormalised (raw block basis preserved)." << std::endl;
} else {
std::cout << GridLogMessage << "*** GCR subspace generation ***" << std::endl;
AggregatesGCR.CreateSubspaceGCR(RNG5,PVdagM,nbasis);
std::cout << GridLogMessage << "Subspace generation: PVdagM operator uses:" << std::endl;
PVdagM.getApplications();
PVdagM.clear();
saveSubspace(AggregatesGCR.subspace, subspace_file);
std::cout << GridLogMessage << "Subspace saved to: " << subspace_file << std::endl;
}
runMG<nbasis,PVdagM_t,ShiftedPVdagM_t,Subspace,LittleDiracOperator,CoarseVector,TwoLevelMG>(
FGrid,
Coarse5d,
CoarseCoarse5d,
CoarseCoarseCoarse5d,
geom,
PVdagM,
ShiftedPVdagM,
AggregatesGCR
);
std::cout << GridLogMessage << "Done" << std::endl;
Grid_finalize();
return 0;
}
+954
View File
@@ -0,0 +1,954 @@
/*************************************************************************************
Grid physics library, www.github.com/paboyle/Grid
Source file: ./examples/Example_pvdagm_5level.cc
Copyright (C) 2023
Author: Peter Boyle <paboyle@ph.ed.ac.uk>
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
See the full license in the file "LICENSE" in the top level distribution directory
*************************************************************************************/
/* END LEGAL */
#include <Grid/Grid.h>
#include <Grid/lattice/PaddedCell.h>
#include <Grid/stencil/GeneralLocalStencil.h>
#include <Grid/algorithms/iterative/PrecGeneralisedConjugateResidual.h>
#include <Grid/algorithms/iterative/PrecGeneralisedConjugateResidualNonHermitian.h>
#include <Grid/algorithms/iterative/BiCGSTAB.h>
using namespace std;
using namespace Grid;
template <class T> void readFile(T& out, std::string const fname){
#ifdef HAVE_LIME
std::cout << Grid::GridLogMessage << "Reading: " << fname << std::endl;
Grid::emptyUserRecord record;
Grid::ScidacReader SR;
SR.open(fname);
SR.readScidacFieldRecord(out, record);
SR.close();
#endif
}
template <class T> void writeFile(T& in, std::string const fname){
#ifdef HAVE_LIME
std::cout << Grid::GridLogMessage << "Writing: " << fname << std::endl;
Grid::emptyUserRecord record;
Grid::ScidacWriter SW(in.Grid()->IsBoss());
SW.open(fname);
SW.writeScidacFieldRecord(in, record);
SW.close();
#endif
}
template <class Field>
void saveSubspace(std::vector<Field> &subspace, std::string const fname){
#ifdef HAVE_LIME
std::cout << Grid::GridLogMessage << "Saving subspace (" << subspace.size() << " vectors) to: " << fname << std::endl;
Grid::emptyUserRecord record;
Grid::ScidacWriter SW(subspace[0].Grid()->IsBoss());
SW.open(fname);
for (int k = 0; k < (int)subspace.size(); k++)
SW.writeScidacFieldRecord(subspace[k], record);
SW.close();
#endif
}
template <class Field>
void loadSubspace(std::vector<Field> &subspace, std::string const fname){
#ifdef HAVE_LIME
std::cout << Grid::GridLogMessage << "Loading subspace (" << subspace.size() << " vectors) from: " << fname << std::endl;
Grid::emptyUserRecord record;
Grid::ScidacReader SR;
SR.open(fname);
for (int k = 0; k < (int)subspace.size(); k++)
SR.readScidacFieldRecord(subspace[k], record);
SR.close();
#endif
}
template<class Matrix,class Field>
class PVdagMLinearOperator : public LinearOperatorBase<Field> {
Matrix &_Mat;
Matrix &_PV;
int nApp;
int nAppDag;
public:
PVdagMLinearOperator(Matrix &Mat,Matrix &PV): _Mat(Mat),_PV(PV), nApp(0), nAppDag(0) {};
void OpDiag (const Field &in, Field &out) { assert(0); }
void OpDir (const Field &in, Field &out,int dir,int disp) { assert(0); }
void OpDirAll (const Field &in, std::vector<Field> &out){ assert(0); };
void Op (const Field &in, Field &out){
Field tmp(in.Grid());
_Mat.M(in,tmp);
_PV.Mdag(tmp,out);
nApp++;
}
void AdjOp (const Field &in, Field &out){
Field tmp(in.Grid());
_PV.M(in,tmp);
_Mat.Mdag(tmp,out);
nAppDag++;
}
void clear() { nApp = 0; nAppDag = 0; }
void getApplications() {
std::cout << GridLogMessage << "# applications of PVdagM: " << nApp << std::endl;
std::cout << GridLogMessage << "# applications of PVdagM^dag: " << nAppDag << std::endl;
std::cout << GridLogMessage << "# applications total: " << nApp + nAppDag << std::endl;
}
void HermOpAndNorm(const Field &in, Field &out,RealD &n1,RealD &n2){
HermOp(in,out);
ComplexD dot = innerProduct(in,out);
n1=real(dot);
n2=norm2(out);
}
void HermOp(const Field &in, Field &out){
Field tmp(in.Grid());
Op(in,tmp);
AdjOp(tmp,out);
}
};
template<class Matrix,class Field>
class MdagPVLinearOperator : public LinearOperatorBase<Field> {
Matrix &_Mat;
Matrix &_PV;
public:
MdagPVLinearOperator(Matrix &Mat,Matrix &PV): _Mat(Mat),_PV(PV){};
void OpDiag (const Field &in, Field &out) { assert(0); }
void OpDir (const Field &in, Field &out,int dir,int disp) { assert(0); }
void OpDirAll (const Field &in, std::vector<Field> &out){ assert(0); };
void Op (const Field &in, Field &out){
Field tmp(in.Grid());
_PV.M(in,tmp);
_Mat.Mdag(tmp,out);
}
void AdjOp (const Field &in, Field &out){
Field tmp(in.Grid());
_Mat.M(in,tmp);
_PV.Mdag(tmp,out);
}
void HermOpAndNorm(const Field &in, Field &out,RealD &n1,RealD &n2){
ComplexD dot = innerProduct(in,out);
n1=real(dot);
n2=norm2(out);
}
void HermOp(const Field &in, Field &out){
Field tmp(in.Grid());
Op(in,tmp);
AdjOp(tmp,out);
}
};
template<class Matrix,class Field>
class ShiftedPVdagMLinearOperator : public LinearOperatorBase<Field> {
Matrix &_Mat;
Matrix &_PV;
RealD shift;
public:
ShiftedPVdagMLinearOperator(RealD _shift,Matrix &Mat,Matrix &PV): shift(_shift),_Mat(Mat),_PV(PV){};
void OpDiag (const Field &in, Field &out) { assert(0); }
void OpDir (const Field &in, Field &out,int dir,int disp) { assert(0); }
void OpDirAll (const Field &in, std::vector<Field> &out){ assert(0); };
void Op (const Field &in, Field &out){
Field tmp(in.Grid());
_Mat.M(in,tmp);
_PV.Mdag(tmp,out);
out = out + shift * in;
}
void AdjOp (const Field &in, Field &out){
Field tmp(in.Grid());
_PV.M(tmp,out);
_Mat.Mdag(in,tmp);
out = out + shift * in;
}
void HermOpAndNorm(const Field &in, Field &out,RealD &n1,RealD &n2){ assert(0); }
void HermOp(const Field &in, Field &out){
Field tmp(in.Grid());
Op(in,tmp);
AdjOp(tmp,out);
}
};
// Lüscher deflated guesser (arXiv:0706.2298 Sec A.3) for a non-Hermitian solve.
// C_{st} = <psi[s] | LinOp | psi[t]>; guess = sum_s c_s psi[s] where c = C^{-1} psi† src.
template<class Field>
class LuscherGuesser : public LinearFunction<Field> {
const std::vector<Field> &psi;
Eigen::MatrixXcd C_inv;
public:
using LinearFunction<Field>::operator();
LuscherGuesser(const std::vector<Field> &psi_, const Eigen::MatrixXcd &Cinv_)
: psi(psi_), C_inv(Cinv_) {}
virtual void operator()(const Field &src, Field &guess) {
int N = psi.size();
Eigen::VectorXcd b(N);
for (int t = 0; t < N; t++)
b(t) = TensorRemove(innerProduct(psi[t], src));
Eigen::VectorXcd c = C_inv * b;
guess = Zero();
for (int s = 0; s < N; s++)
guess += ComplexD(c(s)) * psi[s];
}
};
template<class Fobj,class CComplex,int nbasis>
class MGPreconditioner : public LinearFunction< Lattice<Fobj> > {
public:
using LinearFunction<Lattice<Fobj> >::operator();
typedef Aggregation<Fobj,CComplex,nbasis> Aggregates;
typedef typename Aggregation<Fobj,CComplex,nbasis>::FineField FineField;
typedef typename Aggregation<Fobj,CComplex,nbasis>::CoarseVector CoarseVector;
typedef typename Aggregation<Fobj,CComplex,nbasis>::CoarseMatrix CoarseMatrix;
typedef LinearOperatorBase<FineField> FineOperator;
typedef LinearFunction <FineField> FineSmoother;
typedef LinearOperatorBase<CoarseVector> CoarseOperator;
typedef LinearFunction <CoarseVector> CoarseSolver;
Aggregates & _Aggregates;
FineOperator & _FineOperator;
FineSmoother & _PreSmoother;
FineSmoother & _PostSmoother;
CoarseOperator & _CoarseOperator;
CoarseSolver & _CoarseSolve;
CoarseSolver & _CoarseGuesser;
int level; void Level(int lv) {level = lv; };
MGPreconditioner(Aggregates &Agg,
FineOperator &Fine,
FineSmoother &PreSmoother,
FineSmoother &PostSmoother,
CoarseOperator &CoarseOperator_,
CoarseSolver &CoarseSolve_,
CoarseSolver &CoarseGuesser_)
: _Aggregates(Agg),
_FineOperator(Fine),
_PreSmoother(PreSmoother),
_PostSmoother(PostSmoother),
_CoarseOperator(CoarseOperator_),
_CoarseSolve(CoarseSolve_),
_CoarseGuesser(CoarseGuesser_),
level(1) { }
virtual void operator()(const FineField &in, FineField & out)
{
GridBase *CoarseGrid = _Aggregates.CoarseGrid;
CoarseVector Csrc(CoarseGrid);
CoarseVector Csol(CoarseGrid);
FineField vec1(in.Grid());
FineField vec2(in.Grid());
double t;
out = Zero();
t=-usecond();
_PreSmoother(in,out);
t+=usecond();
std::cout<<GridLogMessage << "PreSmoother took "<< t/1000.0<< "ms" <<std::endl;
_FineOperator.Op(out,vec1); sub(vec1, in ,vec1);
t=-usecond();
_Aggregates.ProjectToSubspace(Csrc,vec1);
t+=usecond();
std::cout<<GridLogMessage << "Project to coarse took "<< t/1000.0<< "ms" <<std::endl;
t=-usecond();
_CoarseGuesser(Csrc,Csol);
_CoarseSolve(Csrc,Csol);
t+=usecond();
std::cout<<GridLogMessage << "Coarse solve took "<< t/1000.0<< "ms" <<std::endl;
t=-usecond();
_Aggregates.PromoteFromSubspace(Csol,vec1);
add(out,out,vec1);
t+=usecond();
std::cout<<GridLogMessage << "Promote to this level took "<< t/1000.0<< "ms" <<std::endl;
_FineOperator.Op(out,vec1); sub(vec1 ,in , vec1);
t=-usecond();
vec2=Zero();
_PostSmoother(vec1,vec2);
t+=usecond();
std::cout<<GridLogMessage << "PostSmoother took "<< t/1000.0<< "ms" <<std::endl;
add(out,out,vec2);
}
};
// Generic shifted linear operator: wraps any LinearOperatorBase and adds shift*I.
// Used to condition the coarse-level GCR smoother, analogous to ShiftedPVdagMLinearOperator
// at the fine level.
template<class Field>
class ShiftedLinearOperator : public LinearOperatorBase<Field> {
LinearOperatorBase<Field> &_Op;
RealD shift;
public:
ShiftedLinearOperator(RealD _shift, LinearOperatorBase<Field> &Op) : shift(_shift), _Op(Op) {}
void OpDiag (const Field &in, Field &out) { assert(0); }
void OpDir (const Field &in, Field &out, int dir, int disp) { assert(0); }
void OpDirAll (const Field &in, std::vector<Field> &out) { assert(0); }
void Op (const Field &in, Field &out) { _Op.Op(in, out); out = out + shift * in; }
void AdjOp (const Field &in, Field &out) { _Op.AdjOp(in, out); out = out + shift * in; }
void HermOpAndNorm(const Field &in, Field &out, RealD &n1, RealD &n2) { assert(0); }
void HermOp (const Field &in, Field &out) { Field tmp(in.Grid()); Op(in,tmp); AdjOp(tmp,out); }
};
template<int NB, class PVdagM_t, class ShiftedPVdagM_t, class Subspace, class LittleDiracOperator, class CoarseVector, class TwoLevelMG>
void runMG(
GridCartesian *FGrid,
GridCartesian *Coarse5d,
GridCartesian *CoarseCoarse5d,
GridCartesian *CoarseCoarseCoarse5d,
GridCartesian *CoarseCoarseCoarseCoarse5d,
NextToNearestStencilGeometry5D geom,
PVdagM_t &PVdagM,
ShiftedPVdagM_t &ShiftedPVdagM,
Subspace &AggregatesPD
) {
std::vector<LatticeFermion> subspace = AggregatesPD.subspace;
assert((int)subspace.size() == NB);
const int nbasis = NB;
const int cb = 0;
CoarseVector c_src(Coarse5d);
CoarseVector c_res(Coarse5d);
Complex one(1.0);
LatticeFermionD f_src(FGrid);
LatticeFermionD f_res(FGrid);
TrivialPrecon<CoarseVector> simpleC;
TrivialPrecon<LatticeFermionD> simple_fine;
//////////////////////////////////////////////////////////////////////
// Level 0→1: coarsen PVdagM, build LinOpCoarse
//////////////////////////////////////////////////////////////////////
LittleDiracOperator LittleDiracOpPV(geom, FGrid, Coarse5d);
LittleDiracOpPV.CoarsenOperator(PVdagM, AggregatesPD);
NonHermitianLinearOperator<LittleDiracOperator,CoarseVector> LinOpCoarse(LittleDiracOpPV);
//////////////////////////////////////////////////////////////////////
// Baseline: plain PGCR on LinOpCoarse (reference for comparison)
//////////////////////////////////////////////////////////////////////
std::cout<<GridLogMessage<<"*******************************************"<<std::endl;
std::cout<<GridLogMessage<<" Level 1 solve: plain PGCR baseline"<<std::endl;
std::cout<<GridLogMessage<<"*******************************************"<<std::endl;
PrecGeneralisedConjugateResidualNonHermitian<CoarseVector> L2PGCR_baseline(3.0e-2,1100,LinOpCoarse,simpleC,10,10);
L2PGCR_baseline.Level(2);
L2PGCR_baseline.Name("Cbaseline");
c_src = one;
c_res = Zero();
L2PGCR_baseline(c_src,c_res);
//////////////////////////////////////////////////////////////////////
// psi_coarse: coarse projections of pre-GS fine null vectors.
// These are the Level 1 near-null vectors, promoted from Level 0.
// Used as the aggregation basis for Level 1→2 coarsening.
//////////////////////////////////////////////////////////////////////
std::vector<CoarseVector> psi_coarse(nbasis, Coarse5d);
for (int k = 0; k < nbasis; k++)
AggregatesPD.ProjectToSubspace(psi_coarse[k], subspace[k]);
//////////////////////////////////////////////////////////////////////
// Diagnostics: W (fine projected matrix) and C (Galerkin check)
//////////////////////////////////////////////////////////////////////
{
Eigen::MatrixXcd W = Eigen::MatrixXcd::Zero(nbasis, nbasis);
LatticeFermion ftmp(FGrid);
for (int j = 0; j < nbasis; j++) {
PVdagM.Op(subspace[j], ftmp);
for (int i = 0; i < nbasis; i++)
W(i,j) = TensorRemove(innerProduct(subspace[i], ftmp));
}
RealD normW = W.norm();
std::cout << GridLogMessage << "Fine projected matrix ||W|| = " << normW << std::endl;
Eigen::MatrixXcd C = Eigen::MatrixXcd::Zero(nbasis, nbasis);
CoarseVector Ac(Coarse5d);
for (int l = 0; l < nbasis; l++) {
LinOpCoarse.Op(psi_coarse[l], Ac);
for (int k = 0; k < nbasis; k++)
C(k,l) = TensorRemove(innerProduct(psi_coarse[k], Ac));
}
RealD normC = C.norm();
RealD normCmCdag = (C - C.adjoint()).norm();
std::cout << GridLogMessage << "Coarse null matrix ||C|| = " << normC << std::endl;
std::cout << GridLogMessage << "Coarse null matrix ||C - C†||/||C|| = " << normCmCdag/normC << std::endl;
std::cout << GridLogMessage << "Galerkin check ||C||/||W|| = " << normC/normW << std::endl;
}
//////////////////////////////////////////////////////////////////////
// Level 1→2: set up aggregation using psi_coarse as subspace.
// Block factor 2,2,3,2 (removes odd local sublattice in z given MPI
// geometry 3×6×4×4 where z-local at Level 1 is 6).
// psi_coarse are assigned directly; CoarsenOperator performs
// block-GS orthogonalisation before building LinOpCoarseCoarse.
//////////////////////////////////////////////////////////////////////
// innerProduct(CoarseSiteObj, CoarseSiteObj) returns iScalar<vTComplex>, so CComplex
// for the L1→L2 level must be iScalar<vTComplex>, not vTComplex.
typedef typename CoarseVector::vector_object CoarseSiteObj;
typedef iScalar<vTComplex> vTTComplex;
typedef GeneralCoarsenedMatrix<CoarseSiteObj,vTTComplex,NB> LittleDiracOperatorL2;
typedef typename LittleDiracOperatorL2::CoarseVector CoarseCoarseVector;
typedef Aggregation<CoarseSiteObj,vTTComplex,NB> SubspaceL2;
typedef MGPreconditioner<CoarseSiteObj,vTTComplex,NB> L1to2MG;
SubspaceL2 AggregatesL2(CoarseCoarse5d, Coarse5d, cb);
for (int k = 0; k < nbasis; k++)
AggregatesL2.subspace[k] = psi_coarse[k];
NextToNearestStencilGeometry5D geom2(CoarseCoarse5d);
LittleDiracOperatorL2 LittleDiracOpL2(geom2, Coarse5d, CoarseCoarse5d);
LittleDiracOpL2.CoarsenOperator(LinOpCoarse, AggregatesL2);
NonHermitianLinearOperator<LittleDiracOperatorL2,CoarseCoarseVector> LinOpCC(LittleDiracOpL2);
TrivialPrecon<CoarseCoarseVector> simpleCC;
//////////////////////////////////////////////////////////////////////
// Lüscher deflation guesser for L3PGCR.
// Step 1: project psi_coarse[k] (promoted fine null vectors) to
// CoarseCoarseVector space — these cover the zero-momentum
// component of the near-null space of LinOpCC.
// Step 2: breed Nextra additional null vectors directly on LinOpCC
// using GCR with random sources — these pick up near-null
// modes at all spatial frequencies not spanned by step 1.
// Step 3: build C_{st} = <psi_cc[s]|LinOpCC|psi_cc[t]> over the
// full augmented basis and invert directly via Eigen LU.
//////////////////////////////////////////////////////////////////////
std::vector<CoarseCoarseVector> psi_cc(nbasis, CoarseCoarse5d);
for (int k = 0; k < nbasis; k++)
AggregatesL2.ProjectToSubspace(psi_cc[k], psi_coarse[k]);
{
int Nextra = nbasis; // breed as many extra as we have promoted ones
if ( getenv("CC_NEXTRA") ) Nextra = atoi(getenv("CC_NEXTRA"));
GridParallelRNG RNG_CC(CoarseCoarse5d);
RNG_CC.SeedFixedIntegers({11,13,17,19});
PrecGeneralisedConjugateResidualNonHermitian<CoarseCoarseVector>
nullGCR(1e-2, 200, LinOpCC, simpleCC, 32, 32);
CoarseCoarseVector tmp(CoarseCoarse5d);
for (int k = 0; k < Nextra; k++) {
CoarseCoarseVector src(CoarseCoarse5d);
gaussian(RNG_CC, src);
tmp = Zero();
nullGCR(src, tmp);
psi_cc.push_back(tmp);
}
std::cout << GridLogMessage << "LinOpCC deflation basis: " << nbasis
<< " promoted + " << Nextra << " bred = " << psi_cc.size() << " total" << std::endl;
}
const int Naug = psi_cc.size();
Eigen::MatrixXcd Ccc = Eigen::MatrixXcd::Zero(Naug, Naug);
{
CoarseCoarseVector Acc(CoarseCoarse5d);
for (int l = 0; l < Naug; l++) {
LinOpCC.Op(psi_cc[l], Acc);
for (int k = 0; k < Naug; k++)
Ccc(k,l) = TensorRemove(innerProduct(psi_cc[k], Acc));
}
}
{
RealD normCcc = Ccc.norm();
RealD normCccmCdag = (Ccc - Ccc.adjoint()).norm();
std::cout << GridLogMessage << "Coarse-coarse deflation matrix ||Ccc|| = " << normCcc << std::endl;
std::cout << GridLogMessage << "Coarse-coarse deflation matrix ||Ccc-Ccc†||/||Ccc|| = " << normCccmCdag/normCcc << std::endl;
}
Eigen::MatrixXcd Ccc_inv = Ccc.inverse();
LuscherGuesser<CoarseCoarseVector> CCDeflGuesser(psi_cc, Ccc_inv);
//////////////////////////////////////////////////////////////////////
// Level 2→3: coarsen LinOpCC using the RAW promoted psi_cc as aggregation
// to build the Level 4 (coarse-coarse-coarse) operator.
// psi_cc[0..nbasis-1] are the coarse-coarse near-null vectors, projected
// from the RAW psi_coarse (themselves projected from the RAW fine null
// vectors) -- the pre-block-GS chain the whole construction depends on.
// CoarsenOperator block-GS orthogonalises AggregatesL3.subspace IN PLACE,
// so assign COPIES of psi_cc and keep psi_cc itself raw.
//
// Tensor depth deepens once more: innerProduct(CoarseCoarseSiteObj,...) returns
// iScalar<vTTComplex>, so CComplex for the L2→L3 level is iScalar<iScalar<vTComplex>>.
//////////////////////////////////////////////////////////////////////
typedef typename CoarseCoarseVector::vector_object CoarseCoarseSiteObj;
typedef iScalar<vTTComplex> vTTTComplex;
typedef GeneralCoarsenedMatrix<CoarseCoarseSiteObj,vTTTComplex,NB> LittleDiracOperatorL3;
typedef typename LittleDiracOperatorL3::CoarseVector CoarseCoarseCoarseVector;
typedef Aggregation<CoarseCoarseSiteObj,vTTTComplex,NB> SubspaceL3;
typedef MGPreconditioner<CoarseCoarseSiteObj,vTTTComplex,NB> L2to3MG;
SubspaceL3 AggregatesL3(CoarseCoarseCoarse5d, CoarseCoarse5d, cb);
for (int k = 0; k < nbasis; k++)
AggregatesL3.subspace[k] = psi_cc[k]; // raw promoted; COPY, keeps psi_cc raw
NextToNearestStencilGeometry5D geom3(CoarseCoarseCoarse5d);
LittleDiracOperatorL3 LittleDiracOpL3(geom3, CoarseCoarse5d, CoarseCoarseCoarse5d);
LittleDiracOpL3.CoarsenOperator(LinOpCC, AggregatesL3); // block-GS's AggregatesL3.subspace in place
NonHermitianLinearOperator<LittleDiracOperatorL3,CoarseCoarseCoarseVector> LinOpCCC(LittleDiracOpL3);
TrivialPrecon<CoarseCoarseCoarseVector> simpleCCC;
//////////////////////////////////////////////////////////////////////
// Level 3→4: coarsen LinOpCCC to build the Level 5 operator, using a
// TRUNCATED basis of only the first NB5 (< nbasis) raw promoted null vectors.
// psi_ccc[k] = raw psi_cc projected through the (block-GS'd) L3 aggregation
// -- the pre-block-GS chain continued one level deeper. We keep only the
// leading NB5: after the global orthogonalisation of the original fine null
// vectors the early indices retain the most-null content (shared low-mode
// components are peeled in first), so the leading NB5 are the crudely-most-
// null slice. This is the cheap "first 30" truncation test; a principled
// sigma-ordered rotation of psi_ccc would replace the slice, not the idea.
// NB: a positive result is conservative (sigma-ordering can only help); a
// negative one is inconclusive until the sigma-ordered NB5 is tried.
//
// Tensor depth deepens once more: CComplex for the L3→L4 level is
// iScalar<vTTTComplex>. NB5 (the coarse dimension) is independent of the
// depth -- it just makes the coarsest site vector NB5-dimensional.
//////////////////////////////////////////////////////////////////////
const int NB5 = 30; // compile-time: changing it re-instantiates the L4/L5 tensors
std::cout << GridLogMessage << "PARAM NB5 (truncated coarsest basis) = " << NB5 << std::endl;
assert(NB5 <= nbasis);
std::vector<CoarseCoarseCoarseVector> psi_ccc(nbasis, CoarseCoarseCoarse5d);
for (int k = 0; k < nbasis; k++)
AggregatesL3.ProjectToSubspace(psi_ccc[k], psi_cc[k]); // raw psi_cc -> L4 null vectors
//////////////////////////////////////////////////////////////////////
// Optional sigma-ordering of psi_ccc (SVD_REORDER set): replace the crude
// first-NB5 slice with the NB5 genuinely-most-null directions of span(psi_ccc)
// under LinOpCCC. For a NON-NORMAL operator the nullness measure is the
// singular value of A restricted to the span -- eig of Q†A†AQ -- NOT the
// numerical range Q†AQ (which non-normality contaminates). Robust route:
// whiten by the Gram (drop near-dependent directions), Hermitian-eig the
// whitened A†A, rotate. The printed singular spectrum IS the SVD study: where
// it falls off tells you the natural NB5, and the same numbers illuminate why
// the earlier singular-subspace deflation re-entered. Safe here because we
// ORDER vectors that then feed a Galerkin projection, not REMOVE a subspace.
// Default (unset) leaves psi_ccc in raw order == the "first 30" test.
//////////////////////////////////////////////////////////////////////
if ( getenv("SVD_REORDER") ) {
std::cout << GridLogMessage << "SVD_REORDER: sigma-ordering psi_ccc under LinOpCCC" << std::endl;
Eigen::MatrixXcd G(nbasis,nbasis); // Gram = Psi^dag Psi
for (int i=0;i<nbasis;i++)
for (int j=0;j<nbasis;j++)
G(i,j) = TensorRemove(innerProduct(psi_ccc[i],psi_ccc[j]));
std::vector<CoarseCoarseCoarseVector> Apsi(nbasis, CoarseCoarseCoarse5d);
for (int j=0;j<nbasis;j++) LinOpCCC.Op(psi_ccc[j], Apsi[j]);
Eigen::MatrixXcd M(nbasis,nbasis); // A^dagA = Psi^dag A^dag A Psi
for (int i=0;i<nbasis;i++)
for (int j=0;j<nbasis;j++)
M(i,j) = TensorRemove(innerProduct(Apsi[i],Apsi[j]));
// Whiten by the Gram: G = Ug diag(g) Ug^dag; keep g > tol*max; T = Ug diag(1/sqrt g).
// Q = Psi T is then orthonormal (Q^dag Q = T^dag G T = I).
Eigen::SelfAdjointEigenSolver<Eigen::MatrixXcd> esG(G);
Eigen::VectorXd g = esG.eigenvalues(); // ascending, real
RealD gmax = g(nbasis-1);
RealD gtol = 1.0e-9 * gmax;
int keep = 0; for (int i=0;i<nbasis;i++) if (g(i) > gtol) keep++;
std::cout << GridLogMessage << " Gram spectrum: min=" << g(0) << " max=" << gmax
<< " cond=" << gmax/std::max(g(0),1.0e-300) << " keep=" << keep << "/" << nbasis << std::endl;
assert(keep >= NB5);
Eigen::MatrixXcd T(nbasis, keep); // whitening (largest-g first)
{ int c=0;
for (int i=nbasis-1;i>=0;i--) if (g(i) > gtol) { T.col(c) = esG.eigenvectors().col(i)/std::sqrt(g(i)); c++; }
}
Eigen::MatrixXcd Mw = T.adjoint() * M * T; // whitened A^dagA (keep x keep, Hermitian)
Eigen::SelfAdjointEigenSolver<Eigen::MatrixXcd> esM(Mw);
Eigen::VectorXd s2 = esM.eigenvalues(); // ascending sigma^2 (most-null first)
std::cout << GridLogMessage << " Singular spectrum sigma_k (most-null first):" << std::endl;
for (int k=0;k<keep;k++)
std::cout << GridLogMessage << " sigma[" << k << "] = " << std::sqrt(std::max(s2(k),0.0)) << std::endl;
Eigen::MatrixXcd R = T * esM.eigenvectors(); // coeffs over Psi, sigma-ordered orthonormal dirs
std::vector<CoarseCoarseCoarseVector> phi(keep, CoarseCoarseCoarse5d);
for (int k=0;k<keep;k++) {
phi[k] = Zero();
for (int j=0;j<nbasis;j++)
phi[k] = phi[k] + ComplexD(R(j,k)) * psi_ccc[j];
}
for (int k=0;k<keep;k++) psi_ccc[k] = phi[k]; // psi_ccc[0..NB5-1] now = most-null dirs
std::cout << GridLogMessage << "SVD_REORDER: psi_ccc replaced by sigma-ordered directions" << std::endl;
}
typedef typename CoarseCoarseCoarseVector::vector_object CoarseCoarseCoarseSiteObj;
typedef iScalar<vTTTComplex> vTTTTComplex;
typedef GeneralCoarsenedMatrix<CoarseCoarseCoarseSiteObj,vTTTTComplex,NB5> LittleDiracOperatorL4;
typedef typename LittleDiracOperatorL4::CoarseVector CoarseCoarseCoarseCoarseVector;
typedef Aggregation<CoarseCoarseCoarseSiteObj,vTTTTComplex,NB5> SubspaceL4;
typedef MGPreconditioner<CoarseCoarseCoarseSiteObj,vTTTTComplex,NB5> L3to4MG;
SubspaceL4 AggregatesL4(CoarseCoarseCoarseCoarse5d, CoarseCoarseCoarse5d, cb);
for (int k = 0; k < NB5; k++)
AggregatesL4.subspace[k] = psi_ccc[k]; // FIRST NB5 raw promoted vectors (truncation)
NextToNearestStencilGeometry5D geom4(CoarseCoarseCoarseCoarse5d);
LittleDiracOperatorL4 LittleDiracOpL4(geom4, CoarseCoarseCoarse5d, CoarseCoarseCoarseCoarse5d);
LittleDiracOpL4.CoarsenOperator(LinOpCCC, AggregatesL4); // block-GS's AggregatesL4.subspace in place
NonHermitianLinearOperator<LittleDiracOperatorL4,CoarseCoarseCoarseCoarseVector> LinOpCCCC(LittleDiracOpL4);
TrivialPrecon<CoarseCoarseCoarseCoarseVector> simpleCCCC;
//////////////////////////////////////////////////////////////////////
// Level 5 bottom solve: GCR on a SHIFTED LinOpCCCC (the coarsest, most
// non-normal operator). l5_shift slides its field of values off the origin;
// defaults to 0.0 (bare LinOpCCCC) until opted in. This is the level a dense
// direct inverse would eventually replace: rank = NB5 * sites(clatt4).
//////////////////////////////////////////////////////////////////////
RealD l5_shift = 0.0;
if(getenv("l5_shift")) l5_shift = atof(getenv("l5_shift"));
std::cout << GridLogMessage << "PARAM l5_shift = " << l5_shift << std::endl;
ShiftedLinearOperator<CoarseCoarseCoarseCoarseVector> ShiftedLinOpCCCC(l5_shift, LinOpCCCC);
PrecGeneralisedConjugateResidualNonHermitian<CoarseCoarseCoarseCoarseVector> L5PGCR(1.0e-1,200,ShiftedLinOpCCCC,simpleCCCC,16,16);
L5PGCR.Level(5);
L5PGCR.Name("CCCCouter");
//////////////////////////////////////////////////////////////////////
// Level 3→4 V-cycle: depth-2 SHIFTED smoother on LinOpCCC + Level 5 bottom.
// Level 4 is no longer the bottom -- it is smoothed shallowly and recursed to
// Level 5, mirroring how Level 3 recurses to Level 4.
//////////////////////////////////////////////////////////////////////
RealD ccc_smoother_shift = 0.05;
int ccc_smoother_nstep = 2;
if(getenv("ccc_smoother_shift")) ccc_smoother_shift = atof(getenv("ccc_smoother_shift"));
if(getenv("ccc_smoother_nstep")) ccc_smoother_nstep = atoi(getenv("ccc_smoother_nstep"));
ShiftedLinearOperator<CoarseCoarseCoarseVector> ShiftedLinOpCCC(ccc_smoother_shift, LinOpCCC);
PrecGeneralisedConjugateResidualNonHermitian<CoarseCoarseCoarseVector>
CoarseCoarseCoarseSmootherGCR(0.01,1,ShiftedLinOpCCC,simpleCCC,ccc_smoother_nstep,ccc_smoother_nstep);
CoarseCoarseCoarseSmootherGCR.SetZeroGuess(1); // smoother slot: caller zeroes guess
CoarseCoarseCoarseSmootherGCR.Level(4);
CoarseCoarseCoarseSmootherGCR.Name("CCCsmoother");
L3to4MG L3to4Precon(AggregatesL4,
LinOpCCC,
simpleCCC, // no pre-smoother
CoarseCoarseCoarseSmootherGCR, // post-smoother: depth-2 shifted GCR
LinOpCCCC,
L5PGCR,
simpleCCCC); // trivial guesser at the bottom
//////////////////////////////////////////////////////////////////////
// Level 4 (coarse-coarse-coarse) solve: GCR preconditioned by the L3→L4 V-cycle.
//////////////////////////////////////////////////////////////////////
PrecGeneralisedConjugateResidualNonHermitian<CoarseCoarseCoarseVector> L4MGsolver(1.0e-1,200,LinOpCCC,L3to4Precon,16,16);
L4MGsolver.Level(4);
L4MGsolver.Name("CCCouter");
//////////////////////////////////////////////////////////////////////
// Level 2→3 V-cycle: depth-2 SHIFTED smoother on LinOpCC + Level 4 solve.
// The shift slides the coarse-coarse field of values off the origin so a
// 2-step smoother has something to bite on a non-normal operator (IRS idea).
//////////////////////////////////////////////////////////////////////
RealD cc_smoother_shift = 0.01;
int cc_smoother_nstep = 2;
if(getenv("cc_smoother_shift")) cc_smoother_shift = atof(getenv("cc_smoother_shift"));
if(getenv("cc_smoother_nstep")) cc_smoother_nstep = atoi(getenv("cc_smoother_nstep"));
ShiftedLinearOperator<CoarseCoarseVector> ShiftedLinOpCC(cc_smoother_shift, LinOpCC);
PrecGeneralisedConjugateResidualNonHermitian<CoarseCoarseVector>
CoarseCoarseSmootherGCR(0.01,1,ShiftedLinOpCC,simpleCC,cc_smoother_nstep,cc_smoother_nstep);
CoarseCoarseSmootherGCR.SetZeroGuess(1); // smoother slot: caller zeroes guess
CoarseCoarseSmootherGCR.Level(3);
CoarseCoarseSmootherGCR.Name("CCsmoother");
L2to3MG L2to3Precon(AggregatesL3,
LinOpCC,
simpleCC, // no pre-smoother
CoarseCoarseSmootherGCR, // post-smoother: depth-2 shifted GCR
LinOpCCC,
L4MGsolver, // coarse solve is now the L3→L4 V-cycle
simpleCCC); // trivial guesser
//////////////////////////////////////////////////////////////////////
// Level 3 (coarse-coarse) solve: GCR preconditioned by the L2→L3 V-cycle.
// Replaces the plain L3PGCR of the 3-level build -- the coarse-coarse level
// is now smoothed shallowly and recursed rather than solved deeply.
//////////////////////////////////////////////////////////////////////
PrecGeneralisedConjugateResidualNonHermitian<CoarseCoarseVector> L3MGsolver(1.0e-1,200,LinOpCC,L2to3Precon,16,16);
L3MGsolver.Level(3);
L3MGsolver.Name("CCouter");
//////////////////////////////////////////////////////////////////////
// Coarse-level GCR smoother for Level 1→2 V-cycle.
// Mirrors fine-grid SmootherGCR: shifted operator + fixed step count.
// coarse_smoother_shift and coarse_smoother_nstep are the tuning knobs.
//////////////////////////////////////////////////////////////////////
RealD coarse_smoother_shift = 0.01;
int coarse_smoother_nstep = 2; // depth-2 smoother on the coarse level
if(getenv("coarse_smoother_shift")) coarse_smoother_shift = atof(getenv("coarse_smoother_shift"));
if(getenv("coarse_smoother_nstep")) coarse_smoother_nstep = atoi(getenv("coarse_smoother_nstep"));
ShiftedLinearOperator<CoarseVector> ShiftedLinOpCoarse(coarse_smoother_shift, LinOpCoarse);
PrecGeneralisedConjugateResidualNonHermitian<CoarseVector> CoarseSmootherGCR(0.01,1,ShiftedLinOpCoarse,simpleC,coarse_smoother_nstep,coarse_smoother_nstep);
CoarseSmootherGCR.SetZeroGuess(1); // smoother slot: caller zeroes guess
CoarseSmootherGCR.Level(2);
CoarseSmootherGCR.Name("Csmoother");
//////////////////////////////////////////////////////////////////////
// Level 1→2 V-cycle preconditioner.
//////////////////////////////////////////////////////////////////////
L1to2MG L1to2Precon(AggregatesL2,
LinOpCoarse,
simpleC, // no pre-smoother (matches fine-grid setup)
CoarseSmootherGCR, // post-smoother: depth-2 shifted GCR
LinOpCC,
L3MGsolver, // coarse-coarse solve is now the L2→L3 V-cycle
CCDeflGuesser); // Lüscher guesser: psi_cc C^{-1} psi_cc†
//////////////////////////////////////////////////////////////////////
// Standalone Level 1 two-level solve test.
// Compare against plain PGCR baseline above.
//////////////////////////////////////////////////////////////////////
std::cout<<GridLogMessage<<"*******************************************"<<std::endl;
std::cout<<GridLogMessage<<" Level 1 solve: two-level MG preconditioned PGCR"<<std::endl;
std::cout<<GridLogMessage<<"*******************************************"<<std::endl;
PrecGeneralisedConjugateResidualNonHermitian<CoarseVector> L2MGsolver(3.0e-2,200,LinOpCoarse,L1to2Precon,16,16);
L2MGsolver.Level(2);
L2MGsolver.Name("Couter");
c_res = Zero();
L2MGsolver(c_src,c_res);
std::cout << GridLogMessage << "Level 1 two-level test: PVdagM operator uses:" << std::endl;
PVdagM.getApplications();
PVdagM.clear();
//////////////////////////////////////////////////////////////////////
// Full five-level outer solve
//////////////////////////////////////////////////////////////////////
std::cout<<GridLogMessage<<"*******************************************"<<std::endl;
std::cout<<GridLogMessage<<" Five-level outer solve"<<std::endl;
std::cout<<GridLogMessage<<"*******************************************"<<std::endl;
PrecGeneralisedConjugateResidualNonHermitian<LatticeFermionD> SmootherGCR(0.01,1,ShiftedPVdagM,simple_fine,16,16);
SmootherGCR.SetZeroGuess(1); // pre/post smoother slots zero their guess
SmootherGCR.Level(1);
SmootherGCR.Name("Fsmoother");
f_src = one;
// Pre-smoother: none (TrivialPrecon); post-smoother: shifted PGCR.
// Coarse solver: L2MGsolver (PGCR preconditioned by Level 1→2 V-cycle).
TwoLevelMG ThreeLevelPrecon(AggregatesPD,
PVdagM,
simple_fine,
SmootherGCR,
LinOpCoarse,
L2MGsolver,
simpleC);
PrecGeneralisedConjugateResidualNonHermitian<LatticeFermion> L1PGCR(1.0e-8,1000,PVdagM,ThreeLevelPrecon,16,16);
L1PGCR.Level(1);
L1PGCR.Name("Fouter");
f_res = Zero();
L1PGCR(f_src,f_res);
std::cout << GridLogMessage << "Five-level outer solve: PVdagM operator uses:" << std::endl;
PVdagM.getApplications();
PVdagM.clear();
}
int main (int argc, char ** argv)
{
Grid_init(&argc,&argv);
const int Ls = 24;
RealD M5 = 1.8;
RealD b = 1.5;
RealD c = 0.5;
RealD mass = 0.00078;
if ( getenv("MASS") ) mass = atof(getenv("MASS"));
const int nbasis = 60;
std::cout << GridLogMessage << "Mass: " << mass << ", Ls: " << Ls << ", b=" << b << ", c=" << c << std::endl;
std::cout << GridLogMessage << "nbasis: " << nbasis << std::endl;
std::vector<int> lat_size {48, 48, 48, 96};
GridCartesian * UGrid = SpaceTimeGrid::makeFourDimGrid(lat_size, GridDefaultSimd(Nd,vComplex::Nsimd()),GridDefaultMpi());
GridRedBlackCartesian * UrbGrid = SpaceTimeGrid::makeFourDimRedBlackGrid(UGrid);
GridCartesian * FGrid = SpaceTimeGrid::makeFiveDimGrid(Ls,UGrid);
GridRedBlackCartesian * FrbGrid = SpaceTimeGrid::makeFiveDimRedBlackGrid(Ls,UGrid);
// Level 1 coarse grid: block 2^4 from fine (48×48×48×96 → 24×24×24×48, Ls=1)
Coordinate clatt = lat_size;
for (int d = 0; d < 4; d++) clatt[d] /= 2;
std::cout << GridLogMessage << "Level 1 coarse lattice: " << clatt << std::endl;
GridCartesian *Coarse4d = SpaceTimeGrid::makeFourDimGrid(clatt, GridDefaultSimd(Nd,vComplex::Nsimd()),GridDefaultMpi());
GridCartesian *Coarse5d = SpaceTimeGrid::makeFiveDimGrid(1,Coarse4d);
// Level 2 coarse-coarse grid: block 2,2,3,3 from Level 1 (24×24×24×48 → 12×12×8×16, Ls=1).
// MPI geometry 3.6.4.4 (288 ranks): fine local {16,8,12,24}.
// Level 1 local {8,4,6,12}; Level 2 local {4,2,2,4}.
// z blocked by 3: z-Level1-local=6; 6/3=2 (even), 6/2=3 (odd) → must use 3.
// t blocked by 3: t-Level1-local=12; 12/3=4 divisible by Nsimd=4 (gen-simd-width=64).
// t-block=2 gives t2-local=6, 6 mod 4 ≠ 0, fails Grid SIMD assertion. ✓
// With {4,2,2,4}: Nsimd=4 goes into x or t (both =4). ✓
Coordinate clatt2 = clatt;
clatt2[0] /= 2;
clatt2[1] /= 2;
clatt2[2] /= 3;
clatt2[3] /= 3;
std::cout << GridLogMessage << "Level 2 coarse-coarse lattice: " << clatt2 << std::endl;
GridCartesian *CoarseCoarse4d = SpaceTimeGrid::makeFourDimGrid(clatt2, GridDefaultSimd(Nd,vComplex::Nsimd()),GridDefaultMpi());
GridCartesian *CoarseCoarse5d = SpaceTimeGrid::makeFiveDimGrid(1,CoarseCoarse4d);
// Level 3 coarse-coarse-coarse grid: block clatt2 = {12,12,8,16} -> {6,12,8,8}.
// GEOMETRY (mpi 3.6.4.4, Nsimd=4 => SIMD layout {1,1,2,2}, factor 2 on z and t):
// every grid needs z-local and t-local EVEN. clatt2-local is {4,2,2,4}, so
// z-local=2 is already at its minimum even value and CANNOT be blocked (2->1
// is odd and trips the SIMD assertion); y-local=2 would go to 1 (degenerate).
// Only x and t have room, so block {2,1,1,2}: clatt3 {6,12,8,8}, L4-local
// {2,2,2,2} -- all dims even and >=2. z stays unblocked by construction.
Coordinate clatt3 = clatt2;
clatt3[0] /= 2; // x: 12 -> 6 (x-local 4 -> 2)
// clatt3[1] (y) unblocked: y-local 2 -> blocking gives 1 (degenerate)
// clatt3[2] (z) unblocked: z-local 2 is SIMD-pinned even, cannot halve
clatt3[3] /= 2; // t: 16 -> 8 (t-local 4 -> 2)
std::cout << GridLogMessage << "Level 3 coarse-coarse-coarse lattice: " << clatt3 << std::endl;
GridCartesian *CoarseCoarseCoarse4d = SpaceTimeGrid::makeFourDimGrid(clatt3, GridDefaultSimd(Nd,vComplex::Nsimd()),GridDefaultMpi());
GridCartesian *CoarseCoarseCoarse5d = SpaceTimeGrid::makeFiveDimGrid(1,CoarseCoarseCoarse4d);
// Level 4 coarse^4 grid: block clatt3 = {6,12,8,8} -> {3,6,8,8} via {2,2,1,1}.
// mpi 3.6.4.4 => clatt4-local {1,1,2,2}: z-local=2, t-local=2 stay EVEN (SIMD
// factor 2 pins them), so z,t are unblocked; x,y (SIMD factor 1) halve to
// local 1 -- fully distributed but legal for the halo-depth-1 NextToNearest
// stencil. 1152 sites; with NB5=30 that is the 34,560-rank coarsest operator
// a dense direct inverse would target.
Coordinate clatt4 = clatt3;
clatt4[0] /= 2; // x: 6 -> 3 (x-local 2 -> 1)
clatt4[1] /= 2; // y: 12 -> 6 (y-local 2 -> 1)
// clatt4[2] (z) unblocked: z-local 2 is SIMD-pinned even
// clatt4[3] (t) unblocked: t-local 2 is SIMD-pinned even
std::cout << GridLogMessage << "Level 4 coarse^4 lattice: " << clatt4 << std::endl;
GridCartesian *CoarseCoarseCoarseCoarse4d = SpaceTimeGrid::makeFourDimGrid(clatt4, GridDefaultSimd(Nd,vComplex::Nsimd()),GridDefaultMpi());
GridCartesian *CoarseCoarseCoarseCoarse5d = SpaceTimeGrid::makeFiveDimGrid(1,CoarseCoarseCoarseCoarse4d);
std::vector<int> seeds4({1,2,3,4});
std::vector<int> seeds5({5,6,7,8});
GridParallelRNG RNG5(FGrid); RNG5.SeedFixedIntegers(seeds5);
GridParallelRNG RNG4(UGrid); RNG4.SeedFixedIntegers(seeds4);
LatticeGaugeField Umu(UGrid);
std::cout << GridLogMessage << "Reading gauge field" << std::endl;
FieldMetaData header;
std::string file("/ccs/home/poare/ckpoint_lat.1000");
NerscIO::readConfiguration(Umu,header,file);
RealD b_ = 1.5;
RealD c_ = 0.5;
MobiusFermionD Ddwf(Umu,*FGrid,*FrbGrid,*UGrid,*UrbGrid,mass,M5,b_,c_);
MobiusFermionD Dpv (Umu,*FGrid,*FrbGrid,*UGrid,*UrbGrid,1.0, M5,b_,c_);
typedef PVdagMLinearOperator<MobiusFermionD,LatticeFermionD> PVdagM_t;
typedef ShiftedPVdagMLinearOperator<MobiusFermionD,LatticeFermionD> ShiftedPVdagM_t;
typedef GeneralCoarsenedMatrix<vSpinColourVector,vTComplex,nbasis> LittleDiracOperator;
typedef LittleDiracOperator::CoarseVector CoarseVector;
typedef Aggregation<vSpinColourVector,vTComplex,nbasis> Subspace;
typedef MGPreconditioner<vSpinColourVector,vTComplex,nbasis> TwoLevelMG;
PVdagM_t PVdagM(Ddwf,Dpv);
ShiftedPVdagM_t ShiftedPVdagM(0.01,Ddwf,Dpv);
NextToNearestStencilGeometry5D geom(Coarse5d);
// Subspace cache: save after generation, reload on subsequent runs to skip expensive setup.
// Set SUBSPACE_FILE to override the default path.
std::string subspace_file = "/lustre/orion/phy157/proj-shared/phy157_dwf/paboyle/subspace_nb"
+ std::to_string(nbasis) + ".scidac";
if ( getenv("SUBSPACE_FILE") ) subspace_file = std::string(getenv("SUBSPACE_FILE"));
// Check if subspace file exists (boss rank checks, result broadcast via GlobalSum).
uint64_t file_exists = 0;
if ( UGrid->IsBoss() ) {
std::ifstream f(subspace_file);
file_exists = f.good() ? 1 : 0;
}
UGrid->GlobalSum(file_exists);
const int cb = 0;
Subspace AggregatesGCR(Coarse5d,FGrid,cb);
if ( file_exists ) {
std::cout << GridLogMessage << "*** Loading subspace from disk ***" << std::endl;
loadSubspace(AggregatesGCR.subspace, subspace_file);
// Insurance: GLOBAL (whole-lattice) orthonormalise, in case the cached file
// predates the GlobalOrthonormalise() that CreateSubspaceGCR now applies
// (Aggregates.h:196). It is span-preserving and makes the vectors globally
// orthonormal -- it is NOT the block Orthogonalise() below, so it does NOT
// cause the psi_coarse->e_k trap. It also (re)establishes the weak nullness
// gradient (shared most-null components peeled into the early indices) that
// the "first NB5" truncation relies on. Idempotent if the file was already
// globally orthonormal. The RAW subspace copy in runMG happens AFTER this
// call, so the raw-null (pre-block-GS) discipline is preserved.
AggregatesGCR.GlobalOrthonormalise();
// DO NOT block-orthogonalise here: runMG copies subspace[] as the RAW
// (pre-block-GS) basis and CoarsenOperator block-GS's it in place later.
// Orthogonalising now defeats the raw-null discipline (psi_coarse -> e_k)
// and poisons L2/L3/L4. See project_block_orthogonalise_leak.
// AggregatesGCR.Orthogonalise();
std::cout << GridLogMessage << "Subspace loaded, globally orthonormalised (raw block basis preserved)." << std::endl;
} else {
std::cout << GridLogMessage << "*** GCR subspace generation ***" << std::endl;
AggregatesGCR.CreateSubspaceGCR(RNG5,PVdagM,nbasis);
std::cout << GridLogMessage << "Subspace generation: PVdagM operator uses:" << std::endl;
PVdagM.getApplications();
PVdagM.clear();
saveSubspace(AggregatesGCR.subspace, subspace_file);
std::cout << GridLogMessage << "Subspace saved to: " << subspace_file << std::endl;
}
runMG<nbasis,PVdagM_t,ShiftedPVdagM_t,Subspace,LittleDiracOperator,CoarseVector,TwoLevelMG>(
FGrid,
Coarse5d,
CoarseCoarse5d,
CoarseCoarseCoarse5d,
CoarseCoarseCoarseCoarse5d,
geom,
PVdagM,
ShiftedPVdagM,
AggregatesGCR
);
std::cout << GridLogMessage << "Done" << std::endl;
Grid_finalize();
return 0;
}
+717
View File
@@ -0,0 +1,717 @@
/*************************************************************************************
Grid physics library, www.github.com/paboyle/Grid
Source file: ./examples/Example_pvdagm_census.cc
Copyright (C) 2026
Author: Peter Boyle <paboyle@ph.ed.ac.uk>
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
See the full license in the file "LICENSE" in the top level distribution directory
*************************************************************************************/
/* END LEGAL */
// Spectral census of the coarsened PVdagM operator A_c.
//
// Measures the three sets that discriminate between the candidate explanations
// for slow coarse-grid Krylov convergence:
//
// 0. Fine Ritz diagonal of RAW subspace vectors (pre-block-orthog).
// NB CoarsenOperator block-orthogonalises subspace[] IN PLACE; all
// nulliness/deflation bases must be built from a raw copy.
// 1. Adjoint correctness check <y|A x> == <A^dag y|x> (fail-fast)
// 2. Raw-vector coarse images vs A_c: RQ (must equal CENSUS 0 by Galerkin),
// ||A_c psi_c||/||psi_c||, and representability error
// 3. sigma_max^2 = lambda_max(A_c^dag A_c) via power method
// 4. Low singular values Chebyshev-filtered IRL on A_c^dag A_c
// -> sigma_min census = pseudospectrum of A_c evaluated at the origin
// 5. Half-plane margin lambda_min/max of H = (A_c + A_c^dag)/2
// -> min Re W(A_c); positive-real check (Eisenstat-Elman-Schultz bound)
//
// Interpretation:
// sigma_min ~ min|lambda|, ~nbasis tiny then gap : effectively normal, bipartite
// sigma_min ~ min|lambda|, dense low tail : normal but rank-starved
// sigma_min << min|lambda| : non-normal near origin
// lambda_min(H) < 0 : half-plane condition violated
//
// Requires the dagger code path in GeneralCoarsenedMatrix:
// _Adag allocated, PopulateAdag active, _Adag exchanged, hermitian=0.
//
// Env vars:
// MASS fermion mass (default 0.00078)
// SUBSPACE_FILE subspace cache path
// CoarseSolverShift shift baked into coarsening (default 0.0: pure Galerkin)
// CENSUS_NSTOP converged low modes wanted (default 60)
// CENSUS_NK Lanczos Nk (default 96)
// CENSUS_NM Lanczos Nm (default 192)
// CENSUS_TOL Lanczos residual (default 1e-5)
// CENSUS_MAXIT Lanczos max restarts (default 50)
// CHEBY_LO filter low edge in sigma^2 (default 4.0)
// CHEBY_HI filter high edge; 0 = auto from power method x1.1
// CHEBY_ORDER filter order (default 401)
// filter gain at 0 ~ cosh(order*2*sqrt(lo/hi)); with
// hi~2200, lo=4, order=401 => gain ~ 1e14. lo=0.01 at
// order 201 gives gain ~1.4 (stagnation).
#include <Grid/Grid.h>
#include <Grid/Grid_Eigen_Dense.h>
#include <Grid/lattice/PaddedCell.h>
#include <Grid/stencil/GeneralLocalStencil.h>
using namespace std;
using namespace Grid;
RealD mass = 0.00078;
RealD CoarseSolverShift = 0.0;
int CensusNstop = 60;
int CensusNk = 96;
int CensusNm = 192;
RealD CensusTol = 1.0e-5;
int CensusMaxIt = 50;
RealD ChebyLo = 4.0; // sigma^2 cutoff: amplifies sigma < 2. Filter gain ~ cosh(order*2*sqrt(lo/hi))
RealD ChebyHi = 0.0; // 0 => auto: 1.1 * power-method sigma_max^2
int ChebyOrder = 401;
RealD CGdeflTol = 1.0e-8; // CENSUS 6 deflated-CG tolerance
int CGdeflMaxIt = 4000; // CENSUS 6 deflated-CG max iterations
int DeflRank = 0; // CENSUS 6 deflation rank; 0 => all available per basis
void ParseEnvironment(void)
{
if(getenv("MASS")) mass = atof(getenv("MASS"));
if(getenv("CoarseSolverShift")) CoarseSolverShift = atof(getenv("CoarseSolverShift"));
if(getenv("CENSUS_NSTOP")) CensusNstop = atoi(getenv("CENSUS_NSTOP"));
if(getenv("CENSUS_NK")) CensusNk = atoi(getenv("CENSUS_NK"));
if(getenv("CENSUS_NM")) CensusNm = atoi(getenv("CENSUS_NM"));
if(getenv("CENSUS_TOL")) CensusTol = atof(getenv("CENSUS_TOL"));
if(getenv("CENSUS_MAXIT")) CensusMaxIt = atoi(getenv("CENSUS_MAXIT"));
if(getenv("CHEBY_LO")) ChebyLo = atof(getenv("CHEBY_LO"));
if(getenv("CHEBY_HI")) ChebyHi = atof(getenv("CHEBY_HI"));
if(getenv("CHEBY_ORDER")) ChebyOrder = atoi(getenv("CHEBY_ORDER"));
if(getenv("CGDEFL_TOL")) CGdeflTol = atof(getenv("CGDEFL_TOL"));
if(getenv("CGDEFL_MAXIT")) CGdeflMaxIt = atoi(getenv("CGDEFL_MAXIT"));
if(getenv("DEFL_RANK")) DeflRank = atoi(getenv("DEFL_RANK"));
std::cout << GridLogMessage << "PARAM: MASS " << mass << std::endl;
std::cout << GridLogMessage << "PARAM: CoarseSolverShift " << CoarseSolverShift << std::endl;
std::cout << GridLogMessage << "PARAM: CENSUS_NSTOP " << CensusNstop << std::endl;
std::cout << GridLogMessage << "PARAM: CENSUS_NK " << CensusNk << std::endl;
std::cout << GridLogMessage << "PARAM: CENSUS_NM " << CensusNm << std::endl;
std::cout << GridLogMessage << "PARAM: CENSUS_TOL " << CensusTol << std::endl;
std::cout << GridLogMessage << "PARAM: CENSUS_MAXIT " << CensusMaxIt << std::endl;
std::cout << GridLogMessage << "PARAM: CHEBY_LO " << ChebyLo << std::endl;
std::cout << GridLogMessage << "PARAM: CHEBY_HI " << ChebyHi << std::endl;
std::cout << GridLogMessage << "PARAM: CHEBY_ORDER " << ChebyOrder << std::endl;
}
template <class Field>
void saveSubspace(std::vector<Field> &subspace, std::string const fname){
#ifdef HAVE_LIME
std::cout << Grid::GridLogMessage << "Saving subspace (" << subspace.size() << " vectors) to: " << fname << std::endl;
Grid::emptyUserRecord record;
Grid::ScidacWriter SW(subspace[0].Grid()->IsBoss());
SW.open(fname);
for (int k = 0; k < (int)subspace.size(); k++)
SW.writeScidacFieldRecord(subspace[k], record);
SW.close();
#endif
}
template <class Field>
void loadSubspace(std::vector<Field> &subspace, std::string const fname){
#ifdef HAVE_LIME
std::cout << Grid::GridLogMessage << "Loading subspace (" << subspace.size() << " vectors) from: " << fname << std::endl;
Grid::emptyUserRecord record;
Grid::ScidacReader SR;
SR.open(fname);
for (int k = 0; k < (int)subspace.size(); k++)
SR.readScidacFieldRecord(subspace[k], record);
SR.close();
#endif
}
template<class Matrix,class Field>
class PVdagMLinearOperator : public LinearOperatorBase<Field> {
Matrix &_Mat;
Matrix &_PV;
public:
PVdagMLinearOperator(Matrix &Mat,Matrix &PV): _Mat(Mat),_PV(PV) {};
void OpDiag (const Field &in, Field &out) { assert(0); }
void OpDir (const Field &in, Field &out,int dir,int disp) { assert(0); }
void OpDirAll (const Field &in, std::vector<Field> &out){ assert(0); };
void Op (const Field &in, Field &out){
Field tmp(in.Grid());
_Mat.M(in,tmp);
_PV.Mdag(tmp,out);
}
void AdjOp (const Field &in, Field &out){
Field tmp(in.Grid());
_PV.M(in,tmp);
_Mat.Mdag(tmp,out);
}
void HermOpAndNorm(const Field &in, Field &out,RealD &n1,RealD &n2){
HermOp(in,out);
ComplexD dot = innerProduct(in,out);
n1=real(dot);
n2=norm2(out);
}
void HermOp(const Field &in, Field &out){
Field tmp(in.Grid());
Op(in,tmp);
AdjOp(tmp,out);
}
};
template<class Matrix,class Field>
class ShiftedPVdagMLinearOperator : public LinearOperatorBase<Field> {
Matrix &_Mat;
Matrix &_PV;
public:
RealD shift;
ShiftedPVdagMLinearOperator(RealD _shift,Matrix &Mat,Matrix &PV): shift(_shift),_Mat(Mat),_PV(PV){};
void OpDiag (const Field &in, Field &out) { assert(0); }
void OpDir (const Field &in, Field &out,int dir,int disp) { assert(0); }
void OpDirAll (const Field &in, std::vector<Field> &out){ assert(0); };
void Op (const Field &in, Field &out){
Field tmp(in.Grid());
_Mat.M(in,tmp);
_PV.Mdag(tmp,out);
out = out + shift * in;
}
void AdjOp (const Field &in, Field &out){
Field tmp(in.Grid());
_PV.M(tmp,out);
_Mat.Mdag(in,tmp);
out = out + shift * in;
}
void HermOpAndNorm(const Field &in, Field &out,RealD &n1,RealD &n2){ assert(0); }
void HermOp(const Field &in, Field &out){
Field tmp(in.Grid());
Op(in,tmp);
AdjOp(tmp,out);
}
};
// H = (A + A^dag)/2 : Hermitian part of the coarse operator.
// lambda_min(H) = min Re W(A) is the half-plane margin; the EES GCR
// convergence theorem requires it positive.
template<class Matrix,class Field>
class HermitianPartOperator : public LinearOperatorBase<Field> {
Matrix &_Mat;
public:
HermitianPartOperator(Matrix &Mat): _Mat(Mat) {};
void OpDiag (const Field &in, Field &out) { assert(0); }
void OpDir (const Field &in, Field &out,int dir,int disp) { assert(0); }
void OpDirAll (const Field &in, std::vector<Field> &out){ assert(0); };
void Op (const Field &in, Field &out){ HermOp(in,out); }
void AdjOp (const Field &in, Field &out){ HermOp(in,out); }
void HermOpAndNorm(const Field &in, Field &out,RealD &n1,RealD &n2){
HermOp(in,out);
ComplexD dot = innerProduct(in,out);
n1=real(dot);
n2=norm2(out);
}
void HermOp(const Field &in, Field &out){
Field tmp(in.Grid());
_Mat.M(in,out);
_Mat.Mdag(in,tmp);
out = 0.5*(out + tmp);
}
};
// s*I - Op : power method on this gives s - lambda_min(Op) for Hermitian Op.
template<class Field>
class ShiftedNegatedOperator : public LinearOperatorBase<Field> {
LinearOperatorBase<Field> &_Op;
RealD s;
public:
ShiftedNegatedOperator(RealD _s, LinearOperatorBase<Field> &Op): _Op(Op), s(_s) {};
void OpDiag (const Field &in, Field &out) { assert(0); }
void OpDir (const Field &in, Field &out,int dir,int disp) { assert(0); }
void OpDirAll (const Field &in, std::vector<Field> &out){ assert(0); };
void Op (const Field &in, Field &out){ HermOp(in,out); }
void AdjOp (const Field &in, Field &out){ HermOp(in,out); }
void HermOpAndNorm(const Field &in, Field &out,RealD &n1,RealD &n2){
HermOp(in,out);
ComplexD dot = innerProduct(in,out);
n1=real(dot);
n2=norm2(out);
}
void HermOp(const Field &in, Field &out){
_Op.HermOp(in,out);
out = s*in - out;
}
};
int main (int argc, char ** argv)
{
Grid_init(&argc,&argv);
ParseEnvironment();
const int Ls=24;
RealD M5=1.8;
RealD b=1.5;
RealD c=0.5;
const int nbasis = 60;
std::cout << GridLogMessage << "Census of coarse PVdagM: mass=" << mass << " Ls=" << Ls << " nbasis=" << nbasis << std::endl;
std::vector<int> lat_size {48, 48, 48, 96};
GridCartesian * UGrid = SpaceTimeGrid::makeFourDimGrid(lat_size, GridDefaultSimd(Nd,vComplex::Nsimd()),GridDefaultMpi());
GridRedBlackCartesian * UrbGrid = SpaceTimeGrid::makeFourDimRedBlackGrid(UGrid);
GridCartesian * FGrid = SpaceTimeGrid::makeFiveDimGrid(Ls,UGrid);
GridRedBlackCartesian * FrbGrid = SpaceTimeGrid::makeFiveDimRedBlackGrid(Ls,UGrid);
// Blocking: default matches Example_pvdagm.cc; override with e.g. BLOCK=2.2.2.2
Coordinate clatt = lat_size;
Coordinate Block({4,4,6,4});
if ( getenv("BLOCK") ) {
GridCmdOptionIntVector(std::string(getenv("BLOCK")),Block);
GRID_ASSERT(Block.size()==4);
}
for(int d=0;d<clatt.size();d++){
GRID_ASSERT(lat_size[d] % Block[d] == 0);
clatt[d] = lat_size[d]/Block[d];
}
std::cout << GridLogMessage << "Block " << Block << " coarse lattice " << clatt << std::endl;
GridCartesian *Coarse4d = SpaceTimeGrid::makeFourDimGrid(clatt, GridDefaultSimd(Nd,vComplex::Nsimd()),GridDefaultMpi());
GridCartesian *Coarse5d = SpaceTimeGrid::makeFiveDimGrid(1,Coarse4d);
GridParallelRNG RNG5(FGrid); RNG5.SeedFixedIntegers({5,6,7,8});
GridParallelRNG RNG4(UGrid); RNG4.SeedFixedIntegers({1,2,3,4});
GridParallelRNG CRNG(Coarse5d); CRNG.SeedFixedIntegers({5,6,7,8});
LatticeGaugeField Umu(UGrid);
std::cout << GridLogMessage << "Reading gauge field" << std::endl;
FieldMetaData header;
std::string file("/ccs/home/poare/ckpoint_lat.1000");
NerscIO::readConfiguration(Umu,header,file);
MobiusFermionD Ddwf(Umu,*FGrid,*FrbGrid,*UGrid,*UrbGrid,mass,M5,b,c);
MobiusFermionD Dpv (Umu,*FGrid,*FrbGrid,*UGrid,*UrbGrid,1.0, M5,b,c);
typedef PVdagMLinearOperator<MobiusFermionD,LatticeFermionD> PVdagM_t;
typedef ShiftedPVdagMLinearOperator<MobiusFermionD,LatticeFermionD> ShiftedPVdagM_t;
typedef GeneralCoarsenedMatrix<vSpinColourVector,vTComplex,nbasis> LittleDiracOperator;
typedef LittleDiracOperator::CoarseVector CoarseVector;
typedef Aggregation<vSpinColourVector,vTComplex,nbasis> Subspace;
PVdagM_t PVdagM(Ddwf,Dpv);
ShiftedPVdagM_t ShiftedPVdagM(CoarseSolverShift,Ddwf,Dpv);
NextToNearestStencilGeometry5D geom(Coarse5d);
//////////////////////////////////////////////////////////////////////
// Subspace: load from cache or generate
//////////////////////////////////////////////////////////////////////
std::string subspace_file = "/lustre/orion/phy157/proj-shared/phy157_dwf/paboyle/subspace_nb"
+ std::to_string(nbasis) + ".scidac";
if ( getenv("SUBSPACE_FILE") ) subspace_file = std::string(getenv("SUBSPACE_FILE"));
uint64_t file_exists = 0;
if ( UGrid->IsBoss() ) {
std::ifstream f(subspace_file);
file_exists = f.good() ? 1 : 0;
}
UGrid->GlobalSum(file_exists);
const int cb = 0;
Subspace AggregatesGCR(Coarse5d,FGrid,cb);
if ( file_exists ) {
std::cout << GridLogMessage << "*** Loading subspace from disk ***" << std::endl;
loadSubspace(AggregatesGCR.subspace, subspace_file);
} else {
std::cout << GridLogMessage << "*** GCR subspace generation ***" << std::endl;
AggregatesGCR.CreateSubspaceGCR(RNG5,PVdagM,nbasis);
saveSubspace(AggregatesGCR.subspace, subspace_file);
}
//////////////////////////////////////////////////////////////////////
// Keep the RAW (pre-block-orthogonalisation) near-null vectors.
// CoarsenOperator block-orthogonalises subspace[] IN PLACE, after which
// subspace[k] is the orthonormal basis phi_k and Project(phi_k) = e_k,
// the block-constant unit vector -- NOT a near-null direction.
// All nulliness measurements and any deflation basis must use raw[].
//////////////////////////////////////////////////////////////////////
std::vector<LatticeFermionD> raw(nbasis,FGrid);
for(int k=0;k<nbasis;k++) raw[k] = AggregatesGCR.subspace[k];
//////////////////////////////////////////////////////////////////////
// CENSUS 0: fine-grid Ritz diagonal on the loaded/generated raw vectors.
// Expect Re <psi|A|psi>/<psi|psi> ~ the nulliness achieved at generation
// (~2e-3). O(0.1-10) values mean the cache holds orthogonalised vectors
// and must be regenerated.
//////////////////////////////////////////////////////////////////////
std::cout << GridLogMessage << "=================================================" << std::endl;
std::cout << GridLogMessage << "CENSUS 0: fine Ritz diagonal of raw subspace vectors" << std::endl;
std::cout << GridLogMessage << "=================================================" << std::endl;
{
LatticeFermionD Ap(FGrid);
for(int k=0;k<nbasis;k++){
PVdagM.Op(raw[k],Ap);
RealD n2psi = norm2(raw[k]);
ComplexD rq = innerProduct(raw[k],Ap)/n2psi;
std::cout << GridLogMessage << "CENSUS: raw[" << k << "] <psi|A|psi>/<psi|psi> = " << rq
<< " ||A psi||/||psi|| = " << std::sqrt(norm2(Ap)/n2psi) << std::endl;
}
}
//////////////////////////////////////////////////////////////////////
// Coarsen. hermitian=0 is REQUIRED: enables PopulateAdag so that
// Mdag applies A^dag rather than silently aliasing to A.
//////////////////////////////////////////////////////////////////////
LittleDiracOperator LittleDiracOpPV(geom,FGrid,Coarse5d,0);
if ( CoarseSolverShift != 0.0 ) {
std::cout << GridLogMessage << "Coarsening SHIFTED operator, shift=" << CoarseSolverShift << std::endl;
LittleDiracOpPV.CoarsenOperator(ShiftedPVdagM, AggregatesGCR);
} else {
std::cout << GridLogMessage << "Coarsening pure Galerkin operator (no shift)" << std::endl;
LittleDiracOpPV.CoarsenOperator(PVdagM, AggregatesGCR);
}
CoarseVector c_x(Coarse5d);
CoarseVector c_y(Coarse5d);
CoarseVector c_t1(Coarse5d);
CoarseVector c_t2(Coarse5d);
//////////////////////////////////////////////////////////////////////
// CENSUS 1: adjoint correctness (fail fast)
// <y|A x> == <A^dag y|x> for random x,y
//////////////////////////////////////////////////////////////////////
std::cout << GridLogMessage << "=================================================" << std::endl;
std::cout << GridLogMessage << "CENSUS 1: adjoint correctness of dagger code path" << std::endl;
std::cout << GridLogMessage << "=================================================" << std::endl;
random(CRNG,c_x);
random(CRNG,c_y);
LittleDiracOpPV.M (c_x,c_t1); // A x
LittleDiracOpPV.Mdag(c_y,c_t2); // A^dag y
ComplexD ip1 = innerProduct(c_y,c_t1); // <y|A x>
ComplexD ip2 = innerProduct(c_t2,c_x); // <A^dag y|x>
RealD reldiff = abs(ip1-ip2)/abs(ip1);
std::cout << GridLogMessage << "CENSUS: <y|Ax> = " << ip1 << std::endl;
std::cout << GridLogMessage << "CENSUS: <Adag y|x> = " << ip2 << std::endl;
std::cout << GridLogMessage << "CENSUS: rel diff = " << reldiff << " (expect ~1e-14; FAIL if O(1))" << std::endl;
GRID_ASSERT(reldiff < 1.0e-8);
// Coarse near-null ("global") vectors psi_c[k] = P^dag raw[k], stored for the
// Ritz-matrix + deflation study in CENSUS 6 (filled in CENSUS 2's projection
// loop below, before raw[]/subspace[] are freed).
std::vector<CoarseVector> psi_c(nbasis,Coarse5d);
//////////////////////////////////////////////////////////////////////
// CENSUS 2: nulliness of the RAW vectors' coarse images against A_c.
// psi_c[k] = P^dag raw[k]. Galerkin guarantees the Rayleigh quotient
// equals CENSUS 0's fine value exactly (raw[k] is in span of its own
// chopped pieces) -- agreement is a machine-precision validation of
// the coarsening. ||A_c psi_c||/||psi_c|| is the sigma-relevant norm.
// The representability column ||raw - P psi_c||/||raw|| must be ~eps.
//////////////////////////////////////////////////////////////////////
std::cout << GridLogMessage << "=================================================" << std::endl;
std::cout << GridLogMessage << "CENSUS 2: raw-vector coarse images against coarse operator" << std::endl;
std::cout << GridLogMessage << "=================================================" << std::endl;
{
LatticeFermionD back(FGrid);
for(int k=0;k<nbasis;k++){
AggregatesGCR.ProjectToSubspace(c_x, raw[k]);
psi_c[k] = c_x; // store coarse near-null vector for CENSUS 6
AggregatesGCR.PromoteFromSubspace(c_x, back);
back = back - raw[k];
RealD represent = std::sqrt(norm2(back)/norm2(raw[k]));
LittleDiracOpPV.M(c_x, c_t1);
RealD n2psi = norm2(c_x);
RealD n2Apsi= norm2(c_t1);
ComplexD rq = innerProduct(c_x,c_t1) / n2psi;
std::cout << GridLogMessage << "CENSUS: psi_c[" << k << "] <psi|A|psi>/<psi|psi> = " << rq
<< " ||A psi||/||psi|| = " << std::sqrt(n2Apsi/n2psi)
<< " represent_err = " << represent << std::endl;
}
}
// Fine subspace + raw copy are needed only through CENSUS 2; CENSUS 3-5 are
// entirely coarse (LittleDiracOpPV only), and the CENSUS 4 evec save writes the
// coarse vectors directly. Release the ~2*nbasis fine 5D fields (~14 GB/GCD at
// 2^4) HERE, before the order-ChebyOrder Lanczos whose padded coarse temporaries
// otherwise push host memory over the top on top of _A + _Adag (the AccCache
// CpuPtr!=NULL abort seen mid-iteration).
// Direct orthonormality check of the fine near-null vectors (GlobalOrthonormalise
// in CreateSubspaceGCR). raw is freed just below, so this runs here, not CENSUS 6.
// If this is ~0 but the coarse Gram S (CENSUS 6) is not, the gap is representability,
// not orthonormality.
{
Eigen::MatrixXcd Gfine(nbasis,nbasis);
for(int i=0;i<nbasis;i++){
for(int j=i;j<nbasis;j++){
ComplexD g = innerProduct(raw[i],raw[j]);
Gfine(i,j) = std::complex<double>(g.real(),g.imag());
Gfine(j,i) = std::conj(Gfine(i,j));
}
}
double GmI = (Gfine - Eigen::MatrixXcd::Identity(nbasis,nbasis)).norm();
std::cout << GridLogMessage << "CENSUS 2b: fine Gram ||<raw_i|raw_j> - I||_F = " << GmI
<< " (expect ~0 if fine vectors orthonormal)" << std::endl;
}
raw.clear(); raw.shrink_to_fit();
AggregatesGCR.subspace.clear(); AggregatesGCR.subspace.shrink_to_fit();
//////////////////////////////////////////////////////////////////////
// CENSUS 3: sigma_max^2 = lambda_max( A_c^dag A_c ) by power method
//////////////////////////////////////////////////////////////////////
std::cout << GridLogMessage << "=================================================" << std::endl;
std::cout << GridLogMessage << "CENSUS 3: power method for sigma_max" << std::endl;
std::cout << GridLogMessage << "=================================================" << std::endl;
MdagMLinearOperator<LittleDiracOperator,CoarseVector> HermOpAdagA(LittleDiracOpPV);
random(CRNG,c_x);
PowerMethod<CoarseVector> PM;
RealD sigmax2 = PM(HermOpAdagA,c_x);
std::cout << GridLogMessage << "CENSUS: lambda_max(AdagA) = " << sigmax2
<< " sigma_max = " << std::sqrt(sigmax2) << std::endl;
//////////////////////////////////////////////////////////////////////
// CENSUS 4: low singular values via Chebyshev-filtered IRL on A^dag A
// The low end of sigma(A_c) is the pseudospectrum of A_c at z=0.
//////////////////////////////////////////////////////////////////////
std::cout << GridLogMessage << "=================================================" << std::endl;
std::cout << GridLogMessage << "CENSUS 4: Chebyshev-filtered Lanczos, low sigma^2" << std::endl;
std::cout << GridLogMessage << "=================================================" << std::endl;
RealD cheby_hi = (ChebyHi > 0.0) ? ChebyHi : 1.1*sigmax2;
std::cout << GridLogMessage << "Chebyshev filter [" << ChebyLo << "," << cheby_hi << "] order " << ChebyOrder << std::endl;
// eval/evec/Nconv hoisted out of the block so CENSUS 6 can deflate with them.
std::vector<RealD> eval(CensusNm);
std::vector<CoarseVector> evec(CensusNm,Coarse5d);
int Nconv=0;
{
Chebyshev<CoarseVector> Cheby(ChebyLo,cheby_hi,ChebyOrder);
FunctionHermOp<CoarseVector> OpCheby(Cheby,HermOpAdagA);
PlainHermOp<CoarseVector> Op (HermOpAdagA);
ImplicitlyRestartedLanczos<CoarseVector> IRL(OpCheby,Op,CensusNstop,CensusNk,CensusNm,CensusTol,CensusMaxIt);
random(CRNG,c_x);
IRL.calc(eval,evec,c_x,Nconv);
std::cout << GridLogMessage << "CENSUS: converged " << Nconv << " modes of AdagA" << std::endl;
for(int i=0;i<Nconv;i++){
std::cout << GridLogMessage << "CENSUS: sigma[" << i << "]^2 = " << eval[i]
<< " sigma = " << std::sqrt(std::max(eval[i],0.0)) << std::endl;
}
// Optionally persist the low right-singular-vector basis: this IS the
// deflation basis for the coarse solve (ADEF1 / MultiRHSDeflation).
// Set CENSUS_EVEC_FILE to enable.
if ( getenv("CENSUS_EVEC_FILE") && Nconv>0 ) {
#ifdef HAVE_LIME
std::string evec_file(getenv("CENSUS_EVEC_FILE"));
std::string eval_file = evec_file + ".evals.xml";
std::cout << GridLogMessage << "CENSUS: saving " << Nconv << " singular vectors to " << evec_file << std::endl;
emptyUserRecord record;
ScidacWriter WR(evec[0].Grid()->IsBoss());
WR.open(evec_file);
for(int i=0;i<Nconv;i++) WR.writeScidacFieldRecord(evec[i],record);
WR.close();
XmlWriter WRx(eval_file);
std::vector<RealD> eval_out(eval.begin(),eval.begin()+Nconv); // don't shrink shared eval
write(WRx,"evals",eval_out);
#endif
}
}
// NB: evec/eval stay sized CensusNm (Lattice has no default ctor, so
// std::vector<CoarseVector>::resize won't instantiate). They match in size,
// which is all DeflatedGuesser asserts; CENSUS 6 only ever indexes [0,Nconv).
//////////////////////////////////////////////////////////////////////
// CENSUS 5: half-plane margin from the Hermitian part
// lambda_min(H) = min Re W(A_c) > 0 <=> positive-real (EES applies)
//////////////////////////////////////////////////////////////////////
std::cout << GridLogMessage << "=================================================" << std::endl;
std::cout << GridLogMessage << "CENSUS 5: Hermitian part H=(A+Adag)/2, half-plane margin" << std::endl;
std::cout << GridLogMessage << "=================================================" << std::endl;
HermitianPartOperator<LittleDiracOperator,CoarseVector> HermPart(LittleDiracOpPV);
random(CRNG,c_x);
RealD lamHmax = PM(HermPart,c_x);
std::cout << GridLogMessage << "CENSUS: lambda_max(H) = " << lamHmax << std::endl;
// lambda_min(H): most-negative eigenvalue via Chebyshev-filtered IRL on H.
// A shifted power method cannot separate it from the dense low tail (which is
// why the earlier -0.006 is suspect); Cheby(lo, hi>=lambda_max) amplifies the
// most-negative mode hardest so IRL isolates the true bottom of the spectrum.
RealD hpLo = getenv("HPLANE_CHEBY_LO") ? atof(getenv("HPLANE_CHEBY_LO")) : 0.1;
RealD hpHi = getenv("HPLANE_CHEBY_HI") ? atof(getenv("HPLANE_CHEBY_HI")) : 1.1*lamHmax;
int hpOrder = getenv("HPLANE_CHEBY_ORDER") ? atoi(getenv("HPLANE_CHEBY_ORDER")) : 61;
// Grid's Chebyshev filter MUST be odd order (positive for x < -1, where the low/
// negative modes map); an even order flips the sign there and the IRL blows up.
if(hpOrder%2==0){ hpOrder++;
std::cout<<GridLogMessage<<"HPLANE_CHEBY_ORDER forced odd -> "<<hpOrder<<std::endl; }
int hpNstop = getenv("HPLANE_NSTOP") ? atoi(getenv("HPLANE_NSTOP")) : 8;
int hpNk = getenv("HPLANE_NK") ? atoi(getenv("HPLANE_NK")) : 24;
int hpNm = getenv("HPLANE_NM") ? atoi(getenv("HPLANE_NM")) : 48;
RealD hpTol = getenv("HPLANE_TOL") ? atof(getenv("HPLANE_TOL")) : 1.0e-4;
int hpMaxIt = getenv("HPLANE_MAXIT") ? atoi(getenv("HPLANE_MAXIT")) : 20;
Chebyshev<CoarseVector> HCheby(hpLo,hpHi,hpOrder);
FunctionHermOp<CoarseVector> HOpCheby(HCheby,HermPart);
PlainHermOp<CoarseVector> HOpPlain(HermPart);
ImplicitlyRestartedLanczos<CoarseVector> HIRL(HOpCheby,HOpPlain,hpNstop,hpNk,hpNm,hpTol,hpMaxIt);
std::vector<RealD> heval(hpNm);
std::vector<CoarseVector> hevec(hpNm,Coarse5d);
int hNconv=0;
random(CRNG,c_x);
HIRL.calc(heval,hevec,c_x,hNconv);
RealD lamHmin = (hNconv>0) ? heval[0] : 9.99e99;
for(int kk=0;kk<hNconv;kk++) lamHmin = std::min(lamHmin, heval[kk]);
std::cout << GridLogMessage << "CENSUS: IRL H-bottom converged " << hNconv
<< " eigenvalues; most-negative = " << lamHmin << std::endl;
std::cout << GridLogMessage << "CENSUS: lambda_min(H) = " << lamHmin
<< " (positive-real / half-plane margin; NEGATIVE => GCR unguaranteed)" << std::endl;
//////////////////////////////////////////////////////////////////////
// CENSUS 6: Ritz matrix of the coarse near-null basis + deflated-CG study
//
// C_ij = <psi_c^i | A^dag A | psi_c^j>, S_ij = <psi_c^i | psi_c^j>.
// psi_c are NOT orthonormal (raw near-null projected to coarse), so the
// Rayleigh-Ritz problem is the GENERALISED Hermitian one C v = theta S v.
// Its eigenpairs (theta_i, g_i = sum_j V(j,i) psi_c^j) are the best approximate
// eigenpairs of A^dag A available from span{psi_c}; Eigen normalises so that
// V^dag S V = I, hence <g_i|g_j> = delta_ij and the g_i are an orthonormal
// DeflatedGuesser basis. Compare theta_i to the Lanczos sigma_i^2, then run
// three CG solves on A^dag A: [1] no deflation, [2] Lanczos-eigenvector
// deflated guess, [3] Ritz global-vector deflated guess (g_i treated as pure
// eigenvectors with eigenvalue theta_i).
//////////////////////////////////////////////////////////////////////
std::cout << GridLogMessage << "=================================================" << std::endl;
std::cout << GridLogMessage << "CENSUS 6: Ritz matrix C_ij = <psi_c^i|AdagA|psi_c^j> + deflated CG" << std::endl;
std::cout << GridLogMessage << "=================================================" << std::endl;
std::vector<CoarseVector> Apsi(nbasis,Coarse5d);
for(int j=0;j<nbasis;j++) HermOpAdagA.HermOp(psi_c[j],Apsi[j]); // A^dag A psi_c^j
Eigen::MatrixXcd Cmat(nbasis,nbasis);
Eigen::MatrixXcd Smat(nbasis,nbasis);
for(int i=0;i<nbasis;i++){
for(int j=0;j<nbasis;j++){
ComplexD cij = innerProduct(psi_c[i],Apsi[j]);
ComplexD sij = innerProduct(psi_c[i],psi_c[j]);
Cmat(i,j) = std::complex<double>(cij.real(),cij.imag());
Smat(i,j) = std::complex<double>(sij.real(),sij.imag());
}
}
{
Eigen::SelfAdjointEigenSolver<Eigen::MatrixXcd> ses(Smat);
Eigen::MatrixXcd Id = Eigen::MatrixXcd::Identity(nbasis,nbasis);
double SmI = (Smat - Id).norm(); // ||S - I||_F : ~0 iff psi_c orthonormal
std::cout << GridLogMessage << "CENSUS 6: Gram S eig range [" << ses.eigenvalues()(0)
<< ", " << ses.eigenvalues()(nbasis-1)
<< "] ||S - I||_F = " << SmI
<< " (expect ~0: fine vectors are GlobalOrthonormalise'd => psi_c orthonormal)" << std::endl;
}
Eigen::GeneralizedSelfAdjointEigenSolver<Eigen::MatrixXcd> ges(Cmat,Smat);
Eigen::VectorXd theta = ges.eigenvalues(); // ascending, real
Eigen::MatrixXcd Vr = ges.eigenvectors(); // columns; V^dag S V = I
int ncmp = std::min((int)nbasis,Nconv);
std::cout << GridLogMessage << "CENSUS 6: Ritz theta vs Lanczos sigma^2 (both ascending):" << std::endl;
for(int i=0;i<nbasis;i++){
if(i<ncmp)
std::cout << GridLogMessage << "CENSUS: theta["<<i<<"] = "<<theta(i)
<<" sqrt = "<<std::sqrt(std::max(theta(i),0.0))
<<" | sigma^2 = "<<eval[i]<<" theta/sigma^2 = "<<theta(i)/eval[i] << std::endl;
else
std::cout << GridLogMessage << "CENSUS: theta["<<i<<"] = "<<theta(i)
<<" sqrt = "<<std::sqrt(std::max(theta(i),0.0)) << std::endl;
}
// Ritz global vectors g_i = sum_j V(j,i) psi_c^j (S-orthonormal), eigenvalue theta_i
std::vector<CoarseVector> gvec(nbasis,Coarse5d);
std::vector<RealD> gval(nbasis);
for(int i=0;i<nbasis;i++){
gvec[i] = Zero();
for(int j=0;j<nbasis;j++){
ComplexD coeff(Vr(j,i).real(),Vr(j,i).imag());
axpy(gvec[i],coeff,psi_c[j],gvec[i]);
}
gval[i] = theta(i);
}
// How good are the diagonalised global vectors as actual eigenvectors of A^dag A?
{
CoarseVector Ag(Coarse5d), rr(Coarse5d);
int nchk = std::min((int)nbasis,16);
for(int i=0;i<nchk;i++){
HermOpAdagA.HermOp(gvec[i],Ag);
axpy(rr,-gval[i],gvec[i],Ag); // rr = A^dag A g - theta g
RealD rn = std::sqrt(norm2(rr));
std::cout << GridLogMessage << "CENSUS 6: Ritz resid ["<<i<<"] ||AdagA g - theta g||/theta = "
<< rn/std::max(gval[i],1.0e-30) << " (theta="<<gval[i]<<")" << std::endl;
}
}
// --- Three CG solves on A^dag A, common random source ---
int rankLanc = (DeflRank>0) ? std::min(DeflRank,Nconv) : Nconv;
int rankRitz = (DeflRank>0) ? std::min(DeflRank,(int)nbasis) : (int)nbasis;
std::cout << GridLogMessage << "CENSUS 6: CG tol "<<CGdeflTol<<" maxit "<<CGdeflMaxIt
<< " ; deflation ranks -- Lanczos "<<rankLanc<<", Ritz "<<rankRitz << std::endl;
CoarseVector cg_src(Coarse5d); random(CRNG,cg_src);
CoarseVector cg_x (Coarse5d);
ConjugateGradient<CoarseVector> CGdefl(CGdeflTol,CGdeflMaxIt,false);
cg_x = Zero();
CGdefl(HermOpAdagA,cg_src,cg_x);
std::cout << GridLogMessage << "CENSUS 6: [1] no deflation : iters = "
<< CGdefl.IterationsToComplete << " true_resid = " << CGdefl.TrueResidual << std::endl;
if(rankLanc>0){
DeflatedGuesser<CoarseVector> guessL(evec,eval,rankLanc);
guessL(cg_src,cg_x);
CGdefl(HermOpAdagA,cg_src,cg_x);
std::cout << GridLogMessage << "CENSUS 6: [2] Lanczos-evec deflation : iters = "
<< CGdefl.IterationsToComplete << " true_resid = " << CGdefl.TrueResidual << std::endl;
}
{
DeflatedGuesser<CoarseVector> guessR(gvec,gval,rankRitz);
guessR(cg_src,cg_x);
CGdefl(HermOpAdagA,cg_src,cg_x);
std::cout << GridLogMessage << "CENSUS 6: [3] Ritz-vector deflation : iters = "
<< CGdefl.IterationsToComplete << " true_resid = " << CGdefl.TrueResidual << std::endl;
}
//////////////////////////////////////////////////////////////////////
// Summary
//////////////////////////////////////////////////////////////////////
std::cout << GridLogMessage << "=================================================" << std::endl;
std::cout << GridLogMessage << "CENSUS SUMMARY" << std::endl;
std::cout << GridLogMessage << " sigma_max = " << std::sqrt(sigmax2) << std::endl;
std::cout << GridLogMessage << " lambda_max(H) = " << lamHmax << std::endl;
std::cout << GridLogMessage << " lambda_min(H) = " << lamHmin << std::endl;
std::cout << GridLogMessage << " low sigma census : see CENSUS 4 table above" << std::endl;
std::cout << GridLogMessage << " Compare min sigma with |lambda| from Krylov-Schur (Patrick):" << std::endl;
std::cout << GridLogMessage << " sigma_min ~ min|lambda| : effectively normal; deflation rank is the issue" << std::endl;
std::cout << GridLogMessage << " sigma_min << min|lambda|: non-normal; need two-sided/singular-vector deflation" << std::endl;
std::cout << GridLogMessage << "=================================================" << std::endl;
std::cout << GridLogMessage << "Done" << std::endl;
Grid_finalize();
return 0;
}
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/*
* Example_pvdagm_halfplane.cc
*
* Standalone fine-operator diagnostic: the EES half-plane margin of the
* (non-Hermitian) PV-preconditioned Mobius DWF operator
*
* A(m_adj) = D_adj^dag D_light (D_adj plays the Pauli-Villars role)
*
* as a function of the adjoint mass m_adj, dialled from the light quark mass
* up to the Pauli-Villars mass (=1). No coarse grid, no subspace, no Lanczos
* -- pure power-method spectral tests on the fine grid.
*
* Purpose: A is the LEFT preconditioner for inverting the light operator.
* To solve D_light X = B we iterate the preconditioned system
* (D_adj^dag D_light) X = D_adj^dag B ,
* whose solution X is independent of m_adj -- only the conditioning and the
* iterative convergence change. m_adj = m_light is the usual CGNR (symmetric
* normal equations); m_adj = 1 is the Pauli-Villars preconditioned system.
* The sweep asks which m_adj keeps the preconditioned operator well-behaved
* (positive-real / EES-guaranteed) while buying the wider spectral range.
*
* For the Hermitian part H(A) = (A + A^dag)/2 we measure, per m_adj:
*
* lambda_max(H) -- power method on H
* lambda_min(H) -- power method on (sI - H) => min Re W(A), the half-plane
* margin. EES (Eisenstat-Elman-Schultz 1983, Thm 3.3)
* GUARANTEES GCR convergence with rate
* [ 1 - lambda_min(H)^2 / sigma_max^2 ]^{1/2}
* ONLY when lambda_min(H) > 0 (positive-real / A's field
* of values in the open right half-plane). A negative
* value means the guarantee is lost (not that GCR
* diverges); the magnitude is then the distance-to-
* positive-realness, i.e. the shift/deflation needed to
* recover it.
* sigma_max -- power method on A^dag A (= A.HermOp)
*
* Endpoints:
* m_adj = m_light => A = M^dag M, Hermitian PD, positive-real by
* construction, lambda_min(H) = sigma_min^2 > 0 (the
* squared / CGNR operator).
* m_adj = 1 => A = PV^dag M, the standard PVdagM operator.
*
* Env: MASS, M5, MOBIUS_B, MOBIUS_C, LS, CONFIG,
* MADJ_LIST (comma separated) OR MADJ_MIN / MADJ_MAX / MADJ_N (geometric).
*
* Caveat: lambda_min(H) via a shifted power method can be soft when it sits
* near zero over a dense low spectrum. The SIGN and the TREND across m_adj
* are the robust signal; confirm an individual near-zero value with a proper
* shifted Lanczos if it is load-bearing.
*/
#include <Grid/Grid.h>
using namespace std;
using namespace Grid;
//////////////////////////////////////////////////////////////////////
// A = PV^dag M : Op = _PV.Mdag . _Mat.M , AdjOp = _Mat.Mdag . _PV.M
//////////////////////////////////////////////////////////////////////
template<class Matrix,class Field>
class PVdagMLinearOperator : public LinearOperatorBase<Field> {
Matrix &_Mat;
Matrix &_PV;
public:
PVdagMLinearOperator(Matrix &Mat,Matrix &PV): _Mat(Mat),_PV(PV) {};
void OpDiag (const Field &in, Field &out) { assert(0); }
void OpDir (const Field &in, Field &out,int dir,int disp) { assert(0); }
void OpDirAll (const Field &in, std::vector<Field> &out){ assert(0); };
void Op (const Field &in, Field &out){
Field tmp(in.Grid());
_Mat.M(in,tmp);
_PV.Mdag(tmp,out);
}
void AdjOp (const Field &in, Field &out){
Field tmp(in.Grid());
_PV.M(in,tmp);
_Mat.Mdag(tmp,out);
}
void HermOpAndNorm(const Field &in, Field &out,RealD &n1,RealD &n2){
HermOp(in,out);
ComplexD dot = innerProduct(in,out);
n1=real(dot);
n2=norm2(out);
}
void HermOp(const Field &in, Field &out){ // A^dag A
Field tmp(in.Grid());
Op(in,tmp);
AdjOp(tmp,out);
}
};
//////////////////////////////////////////////////////////////////////
// H = (A + A^dag)/2 for a general non-Hermitian LinearOperator A.
//////////////////////////////////////////////////////////////////////
template<class Field>
class HermitianPartLinOp : public LinearOperatorBase<Field> {
LinearOperatorBase<Field> &_A;
public:
HermitianPartLinOp(LinearOperatorBase<Field> &A): _A(A) {};
void OpDiag (const Field &in, Field &out) { assert(0); }
void OpDir (const Field &in, Field &out,int dir,int disp) { assert(0); }
void OpDirAll (const Field &in, std::vector<Field> &out){ assert(0); };
void Op (const Field &in, Field &out){ HermOp(in,out); }
void AdjOp (const Field &in, Field &out){ HermOp(in,out); }
void HermOpAndNorm(const Field &in, Field &out,RealD &n1,RealD &n2){
HermOp(in,out);
ComplexD dot = innerProduct(in,out);
n1=real(dot);
n2=norm2(out);
}
void HermOp(const Field &in, Field &out){
Field tmp(in.Grid());
_A.Op(in,out); // A in
_A.AdjOp(in,tmp); // A^dag in
out = 0.5*(out + tmp);
}
};
//////////////////////////////////////////////////////////////////////
// s*I - Op : power method on this gives s - lambda_min(Op) for Hermitian Op.
//////////////////////////////////////////////////////////////////////
template<class Field>
class ShiftedNegatedOperator : public LinearOperatorBase<Field> {
LinearOperatorBase<Field> &_Op;
RealD s;
public:
ShiftedNegatedOperator(RealD _s, LinearOperatorBase<Field> &Op): _Op(Op), s(_s) {};
void OpDiag (const Field &in, Field &out) { assert(0); }
void OpDir (const Field &in, Field &out,int dir,int disp) { assert(0); }
void OpDirAll (const Field &in, std::vector<Field> &out){ assert(0); };
void Op (const Field &in, Field &out){ HermOp(in,out); }
void AdjOp (const Field &in, Field &out){ HermOp(in,out); }
void HermOpAndNorm(const Field &in, Field &out,RealD &n1,RealD &n2){
HermOp(in,out);
ComplexD dot = innerProduct(in,out);
n1=real(dot);
n2=norm2(out);
}
void HermOp(const Field &in, Field &out){
_Op.HermOp(in,out);
out = s*in - out;
}
};
int main (int argc, char ** argv)
{
Grid_init(&argc,&argv);
RealD mass = 0.00078;
RealD M5 = 1.8;
RealD b = 1.5;
RealD c = 0.5;
int Ls = 24;
std::string config("ckpoint_lat.1000");
if(getenv("MASS")) mass = atof(getenv("MASS"));
if(getenv("M5")) M5 = atof(getenv("M5"));
if(getenv("MOBIUS_B")) b = atof(getenv("MOBIUS_B"));
if(getenv("MOBIUS_C")) c = atof(getenv("MOBIUS_C"));
if(getenv("LS")) Ls = atoi(getenv("LS"));
if(getenv("CONFIG")) config = std::string(getenv("CONFIG"));
// Adjoint-mass sweep: explicit list, or geometric MADJ_MIN..MADJ_MAX in MADJ_N steps.
std::vector<RealD> madj_list;
if(getenv("MADJ_LIST")){
std::stringstream ss(getenv("MADJ_LIST"));
std::string tok;
while(std::getline(ss,tok,',')) if(tok.size()) madj_list.push_back(std::stod(tok));
} else {
int N = getenv("MADJ_N") ? atoi(getenv("MADJ_N")) : 6;
RealD lo = getenv("MADJ_MIN") ? atof(getenv("MADJ_MIN")) : mass;
RealD hi = getenv("MADJ_MAX") ? atof(getenv("MADJ_MAX")) : 1.0;
GRID_ASSERT(N>=1);
for(int i=0;i<N;i++)
madj_list.push_back( (N==1) ? lo : lo*std::pow(hi/lo, double(i)/double(N-1)) );
}
// lambda_min(H) is the most-negative eigenvalue; resolved by Chebyshev-filtered
// Lanczos on H (a shifted power method cannot separate it from the dense low tail).
RealD HalfChebyLo = getenv("HALF_CHEBY_LO") ? atof(getenv("HALF_CHEBY_LO")) : 0.1;
RealD HalfChebyHi = getenv("HALF_CHEBY_HI") ? atof(getenv("HALF_CHEBY_HI")) : 0.0; // 0 => auto
int HalfChebyOrder = getenv("HALF_CHEBY_ORDER") ? atoi(getenv("HALF_CHEBY_ORDER")) : 61;
// Grid's Chebyshev filter MUST be odd order: only then is the polynomial positive
// for x < -1, the region the low/negative modes map to. An even order flips the
// sign there, the filtered operator explodes negative, and the IRL never converges.
if(HalfChebyOrder%2==0){ HalfChebyOrder++;
std::cout<<GridLogMessage<<"HALF_CHEBY_ORDER forced odd -> "<<HalfChebyOrder<<std::endl; }
int HalfNstop = getenv("HALF_NSTOP") ? atoi(getenv("HALF_NSTOP")) : 8;
int HalfNk = getenv("HALF_NK") ? atoi(getenv("HALF_NK")) : 24;
int HalfNm = getenv("HALF_NM") ? atoi(getenv("HALF_NM")) : 48;
RealD HalfTol = getenv("HALF_TOL") ? atof(getenv("HALF_TOL")) : 1.0e-4;
int HalfMaxIt = getenv("HALF_MAXIT") ? atoi(getenv("HALF_MAXIT")) : 20;
std::vector<int> lat = {48,48,48,96};
GridCartesian * UGrid = SpaceTimeGrid::makeFourDimGrid(lat, GridDefaultSimd(Nd,vComplex::Nsimd()),GridDefaultMpi());
GridRedBlackCartesian * UrbGrid = SpaceTimeGrid::makeFourDimRedBlackGrid(UGrid);
GridCartesian * FGrid = SpaceTimeGrid::makeFiveDimGrid(Ls,UGrid);
GridRedBlackCartesian * FrbGrid = SpaceTimeGrid::makeFiveDimRedBlackGrid(Ls,UGrid);
GridParallelRNG RNG5(FGrid); RNG5.SeedFixedIntegers({5,6,7,8});
std::cout << GridLogMessage << "PARAM: MASS(light) " << mass << " M5 " << M5
<< " b " << b << " c " << c << " Ls " << Ls << std::endl;
std::cout << GridLogMessage << "PARAM: CONFIG " << config << std::endl;
LatticeGaugeField Umu(UGrid);
FieldMetaData header;
std::cout << GridLogMessage << "Reading gauge field " << config << std::endl;
NerscIO::readConfiguration(Umu,header,config);
// Fixed light operator (never changes across the sweep).
MobiusFermionD Dlight(Umu,*FGrid,*FrbGrid,*UGrid,*UrbGrid, mass, M5, b, c);
LatticeFermionD x(FGrid);
std::cout << GridLogMessage << "=================================================" << std::endl;
std::cout << GridLogMessage << "FINE HALF-PLANE SWEEP A(m_adj) = D_adj^dag D_light" << std::endl;
std::cout << GridLogMessage << " m_adj = " << mass << " => M^dag M (positive-real); m_adj = 1 => PVdagM" << std::endl;
std::cout << GridLogMessage << "=================================================" << std::endl;
for(auto madj : madj_list){
MobiusFermionD Dadj(Umu,*FGrid,*FrbGrid,*UGrid,*UrbGrid, madj, M5, b, c);
PVdagMLinearOperator<MobiusFermionD,LatticeFermionD> A(Dlight,Dadj); // A = Dadj^dag Dlight
HermitianPartLinOp<LatticeFermionD> H(A);
PowerMethod<LatticeFermionD> PM;
random(RNG5,x); RealD lamHmax = PM(H,x);
// lambda_min(H): most-negative eigenvalue via Chebyshev-filtered IRL on H.
// Cheby(lo,hi) amplifies eigenvalues below lo; with hi>=lambda_max(H) the most
// negative mode is amplified hardest, so IRL isolates the true bottom of the
// (possibly indefinite) spectrum where the shifted power method could not.
RealD fhi = (HalfChebyHi>0.0)? HalfChebyHi : 1.1*lamHmax;
Chebyshev<LatticeFermionD> Cheby(HalfChebyLo,fhi,HalfChebyOrder);
FunctionHermOp<LatticeFermionD> OpCheby(Cheby,H);
PlainHermOp<LatticeFermionD> OpPlain(H);
ImplicitlyRestartedLanczos<LatticeFermionD> IRL(OpCheby,OpPlain,HalfNstop,HalfNk,HalfNm,HalfTol,HalfMaxIt);
std::vector<RealD> heval(HalfNm);
std::vector<LatticeFermionD> hevec(HalfNm,FGrid);
int hNconv=0;
random(RNG5,x);
IRL.calc(heval,hevec,x,hNconv);
RealD lamHmin = (hNconv>0) ? heval[0] : 9.99e99;
for(int kk=0;kk<hNconv;kk++) lamHmin = std::min(lamHmin, heval[kk]);
std::cout << GridLogMessage << " (IRL H-bottom: " << hNconv
<< " converged, most-negative eval " << lamHmin << ")" << std::endl;
random(RNG5,x); RealD sigmax2 = PM(A,x); // A.HermOp = A^dag A
RealD sigmax = std::sqrt(sigmax2);
bool posreal = (lamHmin > 0.0);
RealD ratefac = posreal ? std::sqrt(1.0 - lamHmin*lamHmin/sigmax2) : 0.0; // EES per-iter
RealD iters8 = (posreal && ratefac < 1.0) ? std::log(1.0e-8)/std::log(ratefac) : 0.0;
std::cout << GridLogMessage << "HALFPLANE: m_adj " << madj
<< " lambda_min(H) " << lamHmin
<< " lambda_max(H) " << lamHmax
<< " sigma_max " << sigmax
<< " positive_real " << (posreal ? "YES" : "NO ")
<< (posreal
? (" EES_rate " + std::to_string(ratefac) + " EES_iters(1e-8) " + std::to_string(iters8))
: (" margin_below_zero " + std::to_string(-lamHmin) + " (EES guarantee lost)"))
<< std::endl;
}
std::cout << GridLogMessage << "=================================================" << std::endl;
std::cout << GridLogMessage << "Reading: lambda_min(H) > 0 => EES guarantees GCR at the quoted rate." << std::endl;
std::cout << GridLogMessage << " crossing to < 0 as m_adj -> 1 marks loss of positive-realness." << std::endl;
std::cout << GridLogMessage << " (non-normality: eigenvalues may still be right-half-plane.)" << std::endl;
std::cout << GridLogMessage << "Done" << std::endl;
Grid_finalize();
return 0;
}
+613
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/*************************************************************************************
Grid physics library, www.github.com/paboyle/Grid
Source file: ./examples/Example_pvdagm_mrhs_3level.cc
Copyright (C) 2026
Author: Peter Boyle <paboyle@ph.ed.ac.uk>
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.
See the full license in the file "LICENSE" in the top level distribution directory
*************************************************************************************/
/* END LEGAL */
// MultiRHS (valence) THREE-level multigrid for PVdagM.
//
// This is exactly the plain three-level algorithm of Example_pvdagm_3level_SVDdefl.cc
// with L3_DEFL=0 (NO deflation), applied to the enlarged block-diagonal mRHS system:
// the coarse and coarse-coarse levels run a SINGLE Krylov (one GCR polynomial, inner
// products summed over rhs) on the packed 6D mrhs fields, so both coarse levels batch
// through GEMM (MultiGeneralCoarsenedMatrix) -- the valence throughput win at BOTH levels.
//
// Level structure (each coarse level is a single-field PGCR on a packed 6D mrhs field):
// L1 (fine) : std::vector<LatticeFermionD>, MrhsPGCRNonHermitian on PVdagM,
// preconditioned by the L1->L2 mrhs V-cycle (MrhsTwoLevelMG).
// L2 (coarse) : 6D mrhs coarse field, PGCR, preconditioned by the L2->L3 mrhs
// V-cycle (MrhsCoarseThreeLevelPrec) -- coarse-coarse correction + coarse smoother.
// L3 (coarse-coarse): 6D mrhs coarse-coarse field, PGCR (the innermost solve).
//
// RAW-NULL DISCIPLINE (critical -- see project_block_orthogonalise_leak): the L2->L3
// aggregation MUST be built from RAW fine near-null vectors (pre block-GS). We take a
// raw copy of the loaded subspace BEFORE the L1->L2 CoarsenOperator (which block-
// orthonormalises in place) and project THAT. Guards print ||<psi|psi> - I||: ~0.23 =
// content preserved, ~N_coarse = the e_k leak is back.
//
// Env: MASS SUBSPACE_FILE NRHS
// BLOCK (dotted, default 2.2.2.2) BLOCK2 (dotted, default 2.2.3.3)
// FineSmootherShift FineSmootherOrder
// CoarseSmootherShift CoarseSmootherNstep
// CoarseSolverTol CoarseSolverOrder
// L3_TOL L3_MAXIT L3_NSTEP
// OuterMmax OuterNstep OuterTol
#include <Grid/Grid.h>
#include <Grid/lattice/PaddedCell.h>
#include <Grid/stencil/GeneralLocalStencil.h>
#include <Grid/algorithms/iterative/PrecGeneralisedConjugateResidualNonHermitian.h>
using namespace std;
using namespace Grid;
RealD FineSmootherShift = 0.1;
int FineSmootherOrder = 16;
RealD CoarseSmootherShift = 0.1;
int CoarseSmootherNstep = 4;
RealD CoarseSolverTol = 0.03;
int CoarseSolverOrder = 200;
RealD L3Tol = 2.5e-1;
int L3MaxIt = 50;
int L3Nstep = 50;
RealD OuterTol = 1.0e-8;
int OuterMmax = 8;
int OuterNstep = 8;
int Nrhs = 12;
RealD mass = 0.00078;
void ParseEnvironment(void)
{
if(getenv("MASS")) mass = atof(getenv("MASS"));
if(getenv("FineSmootherShift")) FineSmootherShift = atof(getenv("FineSmootherShift"));
if(getenv("FineSmootherOrder")) FineSmootherOrder = atoi(getenv("FineSmootherOrder"));
if(getenv("CoarseSmootherShift"))CoarseSmootherShift= atof(getenv("CoarseSmootherShift"));
if(getenv("CoarseSmootherNstep"))CoarseSmootherNstep= atoi(getenv("CoarseSmootherNstep"));
if(getenv("CoarseSolverTol")) CoarseSolverTol = atof(getenv("CoarseSolverTol"));
if(getenv("CoarseSolverOrder")) CoarseSolverOrder = atoi(getenv("CoarseSolverOrder"));
if(getenv("L3_TOL")) L3Tol = atof(getenv("L3_TOL"));
if(getenv("L3_MAXIT")) L3MaxIt = atoi(getenv("L3_MAXIT"));
if(getenv("L3_NSTEP")) L3Nstep = atoi(getenv("L3_NSTEP"));
if(getenv("OuterTol")) OuterTol = atof(getenv("OuterTol"));
if(getenv("OuterMmax")) OuterMmax = atoi(getenv("OuterMmax"));
if(getenv("OuterNstep")) OuterNstep = atoi(getenv("OuterNstep"));
if(getenv("NRHS")) Nrhs = atoi(getenv("NRHS"));
std::cout << GridLogMessage << "PARAM: MASS " << mass << std::endl;
std::cout << GridLogMessage << "PARAM: NRHS " << Nrhs << std::endl;
std::cout << GridLogMessage << "PARAM: FineSmootherShift " << FineSmootherShift << std::endl;
std::cout << GridLogMessage << "PARAM: FineSmootherOrder " << FineSmootherOrder << std::endl;
std::cout << GridLogMessage << "PARAM: CoarseSmootherShift" << CoarseSmootherShift<< std::endl;
std::cout << GridLogMessage << "PARAM: CoarseSmootherNstep" << CoarseSmootherNstep<< std::endl;
std::cout << GridLogMessage << "PARAM: CoarseSolverTol " << CoarseSolverTol << std::endl;
std::cout << GridLogMessage << "PARAM: CoarseSolverOrder " << CoarseSolverOrder << std::endl;
std::cout << GridLogMessage << "PARAM: L3_TOL " << L3Tol << std::endl;
std::cout << GridLogMessage << "PARAM: OuterMmax " << OuterMmax << std::endl;
std::cout << GridLogMessage << "PARAM: OuterNstep " << OuterNstep << std::endl;
}
template <class Field>
void saveSubspace(std::vector<Field> &subspace, std::string const fname){
#ifdef HAVE_LIME
Grid::emptyUserRecord record;
Grid::ScidacWriter SW(subspace[0].Grid()->IsBoss());
SW.open(fname);
for (int k = 0; k < (int)subspace.size(); k++) SW.writeScidacFieldRecord(subspace[k], record);
SW.close();
#endif
}
template <class Field>
void loadSubspace(std::vector<Field> &subspace, std::string const fname){
#ifdef HAVE_LIME
Grid::emptyUserRecord record;
Grid::ScidacReader SR;
SR.open(fname);
for (int k = 0; k < (int)subspace.size(); k++) SR.readScidacFieldRecord(subspace[k], record);
SR.close();
#endif
}
//////////////////////////////////////////////////////////////////////
// A = PV^dag M (non-Hermitian), and shifted variant for smoothers.
//////////////////////////////////////////////////////////////////////
template<class Matrix,class Field>
class PVdagMLinearOperator : public LinearOperatorBase<Field> {
Matrix &_Mat; Matrix &_PV;
public:
PVdagMLinearOperator(Matrix &Mat,Matrix &PV): _Mat(Mat),_PV(PV) {};
void OpDiag (const Field &in, Field &out) { assert(0); }
void OpDir (const Field &in, Field &out,int dir,int disp) { assert(0); }
void OpDirAll (const Field &in, std::vector<Field> &out){ assert(0); };
void Op (const Field &in, Field &out){ Field tmp(in.Grid()); _Mat.M(in,tmp); _PV.Mdag(tmp,out); }
void AdjOp (const Field &in, Field &out){ Field tmp(in.Grid()); _PV.M(in,tmp); _Mat.Mdag(tmp,out); }
void HermOpAndNorm(const Field &in, Field &out,RealD &n1,RealD &n2){ HermOp(in,out); ComplexD d=innerProduct(in,out); n1=real(d); n2=norm2(out); }
void HermOp(const Field &in, Field &out){ Field tmp(in.Grid()); Op(in,tmp); AdjOp(tmp,out); }
};
template<class Matrix,class Field>
class ShiftedPVdagMLinearOperator : public LinearOperatorBase<Field> {
Matrix &_Mat; Matrix &_PV;
public:
RealD shift;
ShiftedPVdagMLinearOperator(RealD _shift,Matrix &Mat,Matrix &PV): shift(_shift),_Mat(Mat),_PV(PV){};
void OpDiag (const Field &in, Field &out) { assert(0); }
void OpDir (const Field &in, Field &out,int dir,int disp) { assert(0); }
void OpDirAll (const Field &in, std::vector<Field> &out){ assert(0); };
void Op (const Field &in, Field &out){ Field tmp(in.Grid()); _Mat.M(in,tmp); _PV.Mdag(tmp,out); out = out + shift*in; }
void AdjOp (const Field &in, Field &out){ Field tmp(in.Grid()); _PV.M(tmp,out); _Mat.Mdag(in,tmp); out = out + shift*in; }
void HermOpAndNorm(const Field &in, Field &out,RealD &n1,RealD &n2){ assert(0); }
void HermOp(const Field &in, Field &out){ Field tmp(in.Grid()); Op(in,tmp); AdjOp(tmp,out); }
};
// Generic shift wrapper (for the coarse-level smoother on the 6D mrhs coarse operator).
template<class Field>
class ShiftedLinearOperator : public LinearOperatorBase<Field> {
LinearOperatorBase<Field> &_Op; RealD shift;
public:
ShiftedLinearOperator(RealD _shift, LinearOperatorBase<Field> &Op) : _Op(Op), shift(_shift) {}
void OpDiag (const Field &in, Field &out) { assert(0); }
void OpDir (const Field &in, Field &out,int dir,int disp) { assert(0); }
void OpDirAll (const Field &in, std::vector<Field> &out) { assert(0); }
void Op (const Field &in, Field &out) { _Op.Op(in,out); out = out + shift*in; }
void AdjOp (const Field &in, Field &out) { _Op.AdjOp(in,out); out = out + shift*in; }
void HermOpAndNorm(const Field &in, Field &out,RealD &n1,RealD &n2){ assert(0); }
void HermOp (const Field &in, Field &out) { Field tmp(in.Grid()); Op(in,tmp); AdjOp(tmp,out); }
};
//////////////////////////////////////////////////////////////////////
// mrhs interfaces + single-polynomial mrhs PGCR (verbatim from Example_pvdagm_mrhs.cc):
// reductions summed over rhs -> one alpha/beta per step for the enlarged system.
//////////////////////////////////////////////////////////////////////
template<class Field>
class MrhsLinearFunction {
public:
virtual void operator()(std::vector<Field> &in, std::vector<Field> &out) = 0;
};
template<class Field>
class MrhsPGCRNonHermitian {
public:
RealD Tolerance; Integer MaxIterations; int mmax,nstep,steps,level;
int ZeroGuess = 0; int FirstCycle = 0; // caller contract: zero guess => first-cycle r0 = src
std::string name = "Level 1";
LinearOperatorBase<Field> &Linop;
MrhsLinearFunction<Field> &Preconditioner;
void Level(int lv){ name = "Level " + std::to_string(lv); level=lv; }
void Name(std::string n){ name = n; }
void SetZeroGuess(int z){ ZeroGuess=z; }
MrhsPGCRNonHermitian(RealD tol,Integer maxit,LinearOperatorBase<Field> &_Linop,MrhsLinearFunction<Field> &Prec,int _mmax,int _nstep)
: Tolerance(tol),MaxIterations(maxit),Linop(_Linop),Preconditioner(Prec),mmax(_mmax),nstep(_nstep){ level=1; }
static RealD vnorm2(std::vector<Field> &x){ RealD s=0; for(auto &f:x) s+=norm2(f); return s; }
static ComplexD vinnerProduct(std::vector<Field> &x,std::vector<Field> &y){ ComplexD s(0); for(int r=0;r<(int)x.size();r++) s+=innerProduct(x[r],y[r]); return s; }
static void vaxpy(std::vector<Field> &z,ComplexD a,std::vector<Field> &x,std::vector<Field> &y){ for(int r=0;r<(int)z.size();r++) axpy(z[r],a,x[r],y[r]); }
void vOp(std::vector<Field> &in,std::vector<Field> &out){ for(int r=0;r<(int)in.size();r++) Linop.Op(in[r],out[r]); }
void operator()(std::vector<Field> &src,std::vector<Field> &psi){
RealD cp,ssq,rsq; int nrhs=src.size(); GridBase *grid=src[0].Grid();
ssq=vnorm2(src); rsq=Tolerance*Tolerance*ssq;
std::vector<Field> r(nrhs,grid);
GridStopWatch T; T.Start(); steps=0; FirstCycle=1;
for(int k=0;k<MaxIterations;k++){
cp=GCRnStep(src,psi,rsq);
std::cout<<GridLogMessage<<std::string(level,'\t')<<" "<<name<<" MrhsPGCR("<<mmax<<","<<nstep<<") "<<steps<<" steps cp = "<<cp<<" target "<<rsq<<std::endl;
if(cp<rsq){
T.Stop(); vOp(psi,r); for(int rr=0;rr<nrhs;rr++) axpy(r[rr],-1.0,src[rr],r[rr]);
RealD tr=vnorm2(r);
std::cout<<GridLogMessage<<std::string(level,'\t')<<" "<<name<<" MrhsPGCR: Converged on iteration "<<steps
<<" computed residual "<<std::sqrt(cp/ssq)<<" true residual "<<std::sqrt(tr/ssq)<<" target "<<Tolerance<<std::endl;
std::cout<<GridLogMessage<<std::string(level,'\t')<<" "<<name<<" MrhsPGCR Time elapsed: Total "<<T.Elapsed()<<std::endl;
for(int rr=0;rr<nrhs;rr++){ RealD rn=std::sqrt(norm2(r[rr])/norm2(src[rr])); std::cout<<GridLogMessage<<"MrhsPGCR per-rhs true residual["<<rr<<"] = "<<rn<<std::endl; }
return;
}
}
std::cout<<GridLogMessage<<"MrhsPGCR: did not converge"<<std::endl;
}
RealD GCRnStep(std::vector<Field> &src,std::vector<Field> &psi,RealD rsq){
RealD cp; ComplexD a,b,rq; RealD zAAz; int nrhs=src.size(); GridBase *grid=src[0].Grid();
std::vector<Field> r(nrhs,grid),z(nrhs,grid),Az(nrhs,grid);
std::vector< std::vector<Field> > q(mmax,std::vector<Field>(nrhs,grid));
std::vector< std::vector<Field> > p(mmax,std::vector<Field>(nrhs,grid));
std::vector<RealD> qq(mmax);
std::cout<<GridLogMessage<<std::string(level,'\t')<<" "<<name<<" MrhsPGCR nStep("<<nstep<<")"<<std::endl;
if (ZeroGuess && FirstCycle) { for(int rr=0;rr<nrhs;rr++){ psi[rr]=Zero(); r[rr]=src[rr]; } }
else { vOp(psi,Az); for(int rr=0;rr<nrhs;rr++) r[rr]=src[rr]-Az[rr]; }
FirstCycle=0;
Preconditioner(r,z); vOp(z,Az); zAAz=vnorm2(Az);
p[0]=z; q[0]=Az; qq[0]=zAAz; cp=vnorm2(r);
for(int k=0;k<nstep;k++){
steps++; int kp=k+1, peri_k=k%mmax, peri_kp=kp%mmax;
rq=vinnerProduct(q[peri_k],r); a=rq/qq[peri_k];
vaxpy(psi,a,p[peri_k],psi); vaxpy(r,-a,q[peri_k],r); cp=vnorm2(r);
std::cout<<GridLogMessage<<std::string(level,'\t')<<" "<<name<<" MrhsPGCR step["<<steps<<"] resid "<<cp<<" target "<<rsq<<std::endl;
if((k==nstep-1)||(cp<rsq)) return cp;
Preconditioner(r,z); vOp(z,Az); zAAz=vnorm2(Az);
q[peri_kp]=Az; p[peri_kp]=z;
int northog=((kp)>(mmax-1))?(mmax-1):(kp);
for(int back=0;back<northog;back++){ int peri_back=(k-back)%mmax; GRID_ASSERT((k-back)>=0);
b=-real(vinnerProduct(q[peri_back],Az))/qq[peri_back];
vaxpy(p[peri_kp],b,p[peri_back],p[peri_kp]); vaxpy(q[peri_kp],b,q[peri_back],q[peri_kp]); }
qq[peri_kp]=vnorm2(q[peri_kp]);
}
GRID_ASSERT(0); return cp;
}
};
//////////////////////////////////////////////////////////////////////
// L2->L3 mrhs V-cycle: a LinearFunction on the 6D mrhs COARSE field.
// Mirrors Example_pvdagm_mrhs.cc's MrhsTwoLevelMG one level down, and the
// single-RHS MGPreconditioner of Example_pvdagm_3level_SVDdefl.cc:
// out = in (trivial pre)
// r = in - A_coarse out
// restrict (unpack 6D coarse -> blockProject -> pack 6D coarse-coarse)
// ONE coarse-coarse solve (L3, GEMM)
// prolong (unpack -> blockPromote -> pack); out += correction
// r = in - A_coarse out
// coarse smoother (shifted 6D coarse op); out += smooth(r)
//////////////////////////////////////////////////////////////////////
template<class CoarseField, class CoarseCoarseField>
class MrhsCoarseThreeLevelPrec : public LinearFunction<CoarseField> {
public:
LinearOperatorBase<CoarseField> &_CoarseOp; // mrhs coarse op (6D)
LinearFunction<CoarseField> &_CoarseSmoother; // shifted 6D coarse smoother
MultiRHSBlockProject<CoarseField> &_Projector; // L2->L3 (vector-based)
LinearFunction<CoarseCoarseField> &_CoarseCoarseSolve; // L3 solve (6D cc)
GridBase *_Coarse5d, *_CoarseCoarse5d, *_CoarseCoarseMrhs;
int _nrhs;
MrhsCoarseThreeLevelPrec(LinearOperatorBase<CoarseField> &CoarseOp,
LinearFunction<CoarseField> &CoarseSmoother,
MultiRHSBlockProject<CoarseField> &Projector,
LinearFunction<CoarseCoarseField> &CoarseCoarseSolve,
GridBase *Coarse5d, GridBase *CoarseCoarse5d, GridBase *CoarseCoarseMrhs, int nrhs)
: _CoarseOp(CoarseOp), _CoarseSmoother(CoarseSmoother), _Projector(Projector),
_CoarseCoarseSolve(CoarseCoarseSolve),
_Coarse5d(Coarse5d), _CoarseCoarse5d(CoarseCoarse5d), _CoarseCoarseMrhs(CoarseCoarseMrhs), _nrhs(nrhs) {}
using LinearFunction<CoarseField>::operator();
virtual void operator()(const CoarseField &in, CoarseField &out) {
int nrhs=_nrhs; double t;
CoarseField vec1(in.Grid());
CoarseField vec2(in.Grid());
// trivial pre-smoother
out = in;
// residual (6D coarse)
_CoarseOp.Op(out,vec1); sub(vec1,in,vec1);
// restrict: unpack 6D coarse -> vector<Coarse> -> blockProject -> vector<CoarseCoarse> -> pack 6D cc
std::vector<CoarseField> csplit(nrhs,_Coarse5d);
std::vector<CoarseCoarseField> ccsplit(nrhs,_CoarseCoarse5d);
CoarseCoarseField CCsrc(_CoarseCoarseMrhs);
CoarseCoarseField CCsol(_CoarseCoarseMrhs);
t=-usecond();
for(int r=0;r<nrhs;r++) ExtractSliceFast(csplit[r],vec1,r,0);
_Projector.blockProject(csplit,ccsplit);
for(int r=0;r<nrhs;r++) InsertSliceFast(ccsplit[r],CCsrc,r,0);
t+=usecond();
std::cout<<GridLogMessage<<"L2->L3 restrict took "<<t/1000.0<<"ms"<<std::endl;
// L3 solve (6D coarse-coarse, GEMM)
t=-usecond();
CCsol=Zero();
_CoarseCoarseSolve(CCsrc,CCsol);
t+=usecond();
std::cout<<GridLogMessage<<"L3 coarse-coarse solve took "<<t/1000.0<<"ms ("<<t/1000.0/nrhs<<"ms/rhs)"<<std::endl;
// prolong: unpack 6D cc -> blockPromote -> pack 6D coarse; add correction
t=-usecond();
for(int r=0;r<nrhs;r++) ExtractSliceFast(ccsplit[r],CCsol,r,0);
_Projector.blockPromote(csplit,ccsplit);
for(int r=0;r<nrhs;r++) InsertSliceFast(csplit[r],vec1,r,0);
add(out,out,vec1);
t+=usecond();
std::cout<<GridLogMessage<<"L2->L3 prolong took "<<t/1000.0<<"ms"<<std::endl;
// residual + coarse smoother (6D coarse)
_CoarseOp.Op(out,vec1); sub(vec1,in,vec1);
vec2=Zero();
_CoarseSmoother(vec1,vec2);
add(out,out,vec2);
}
};
//////////////////////////////////////////////////////////////////////
// L1->L2 mrhs V-cycle (verbatim from Example_pvdagm_mrhs.cc):
// per-rhs fine smoother + batched restriction + ONE coarse solve + batched prolong.
// The coarse solve passed in is now itself three-level (preconditioned by L2->L3).
//////////////////////////////////////////////////////////////////////
template<class FineField, class MrhsCoarseVector, class FineSmoother>
class MrhsTwoLevelMG : public MrhsLinearFunction<FineField> {
public:
typedef MrhsCoarseVector CoarseVector;
LinearOperatorBase<FineField> &_FineOperator;
FineSmoother &_PostSmoother;
MultiRHSBlockProject<FineField> &_Projector;
LinearFunction<CoarseVector> &_CoarseSolve;
GridBase *_CoarseGrid, *_CoarseGridMrhs;
MrhsTwoLevelMG(LinearOperatorBase<FineField> &FineOp, FineSmoother &Post,
MultiRHSBlockProject<FineField> &Projector, LinearFunction<CoarseVector> &CoarseSolve,
GridBase *CoarseGrid, GridBase *CoarseGridMrhs)
: _FineOperator(FineOp),_PostSmoother(Post),_Projector(Projector),_CoarseSolve(CoarseSolve),
_CoarseGrid(CoarseGrid),_CoarseGridMrhs(CoarseGridMrhs){}
virtual void operator()(std::vector<FineField> &in, std::vector<FineField> &out){
int nrhs=in.size(); GridBase *fgrid=in[0].Grid(); double t;
std::vector<FineField> vec1(nrhs,fgrid),vec2(nrhs,fgrid);
for(int r=0;r<nrhs;r++) out[r]=in[r];
for(int r=0;r<nrhs;r++){ _FineOperator.Op(out[r],vec1[r]); sub(vec1[r],in[r],vec1[r]); }
std::vector<CoarseVector> Csrc_split(nrhs,_CoarseGrid), Csol_split(nrhs,_CoarseGrid);
CoarseVector CsrcMrhs(_CoarseGridMrhs), CsolMrhs(_CoarseGridMrhs);
t=-usecond();
_Projector.blockProject(vec1,Csrc_split);
for(int r=0;r<nrhs;r++) InsertSliceFast(Csrc_split[r],CsrcMrhs,r,0);
t+=usecond(); std::cout<<GridLogMessage<<"Mrhs project+pack took "<<t/1000.0<<"ms"<<std::endl;
t=-usecond(); CsolMrhs=Zero(); _CoarseSolve(CsrcMrhs,CsolMrhs); t+=usecond();
std::cout<<GridLogMessage<<"Mrhs coarse solve took "<<t/1000.0<<"ms ("<<t/1000.0/nrhs<<"ms/rhs)"<<std::endl;
t=-usecond();
for(int r=0;r<nrhs;r++) ExtractSliceFast(Csol_split[r],CsolMrhs,r,0);
_Projector.blockPromote(vec1,Csol_split);
for(int r=0;r<nrhs;r++) add(out[r],out[r],vec1[r]);
t+=usecond(); std::cout<<GridLogMessage<<"Mrhs unpack+promote took "<<t/1000.0<<"ms"<<std::endl;
for(int r=0;r<nrhs;r++){ _FineOperator.Op(out[r],vec1[r]); sub(vec1[r],in[r],vec1[r]); }
t=-usecond();
for(int r=0;r<nrhs;r++){ vec2[r]=Zero(); _PostSmoother(vec1[r],vec2[r]); add(out[r],out[r],vec2[r]); }
t+=usecond(); std::cout<<GridLogMessage<<"Mrhs post-smooth took "<<t/1000.0<<"ms ("<<t/1000.0/nrhs<<"ms/rhs)"<<std::endl;
}
};
int main (int argc, char ** argv)
{
Grid_init(&argc,&argv);
ParseEnvironment();
const int Ls=24; RealD M5=1.8, b=1.5, c=0.5;
const int nbasis=60; const int nrhs=Nrhs;
GRID_ASSERT(nrhs % vComplex::Nsimd() == 0);
std::vector<int> lat_size {48,48,48,96};
GridCartesian * UGrid = SpaceTimeGrid::makeFourDimGrid(lat_size, GridDefaultSimd(Nd,vComplex::Nsimd()),GridDefaultMpi());
GridRedBlackCartesian * UrbGrid = SpaceTimeGrid::makeFourDimRedBlackGrid(UGrid);
GridCartesian * FGrid = SpaceTimeGrid::makeFiveDimGrid(Ls,UGrid);
GridRedBlackCartesian * FrbGrid = SpaceTimeGrid::makeFiveDimRedBlackGrid(Ls,UGrid);
// Level 1 blocking (default 2^4)
Coordinate clatt = lat_size;
Coordinate Block({2,2,2,2});
if ( getenv("BLOCK") ){ GridCmdOptionIntVector(std::string(getenv("BLOCK")),Block); GRID_ASSERT(Block.size()==4); }
for(int d=0;d<4;d++){ GRID_ASSERT(lat_size[d]%Block[d]==0); clatt[d]=lat_size[d]/Block[d]; }
std::cout << GridLogMessage << "Block " << Block << " coarse lattice " << clatt << std::endl;
// Level 2 blocking (default 2,2,3,3) -- matches Example_pvdagm_3level_SVDdefl
Coordinate cclatt = clatt;
Coordinate Block2({2,2,3,3});
if ( getenv("BLOCK2") ){ GridCmdOptionIntVector(std::string(getenv("BLOCK2")),Block2); GRID_ASSERT(Block2.size()==4); }
for(int d=0;d<4;d++){ GRID_ASSERT(clatt[d]%Block2[d]==0); cclatt[d]=clatt[d]/Block2[d]; }
std::cout << GridLogMessage << "Block2 " << Block2 << " coarse-coarse lattice " << cclatt << std::endl;
GridCartesian *Coarse4d = SpaceTimeGrid::makeFourDimGrid(clatt, GridDefaultSimd(Nd,vComplex::Nsimd()),GridDefaultMpi());
GridCartesian *Coarse5d = SpaceTimeGrid::makeFiveDimGrid(1,Coarse4d);
GridCartesian *CoarseCoarse4d = SpaceTimeGrid::makeFourDimGrid(cclatt, GridDefaultSimd(Nd,vComplex::Nsimd()),GridDefaultMpi());
GridCartesian *CoarseCoarse5d = SpaceTimeGrid::makeFiveDimGrid(1,CoarseCoarse4d);
// 6D mrhs grids: rhs is dim 0, SIMD across rhs (pattern: Test_general_coarse_hdcg_phys48.cc)
Coordinate mpi=GridDefaultMpi();
Coordinate rhMpi ({1,1,mpi[0],mpi[1],mpi[2],mpi[3]});
Coordinate rhSimd({vComplex::Nsimd(),1,1,1,1,1});
Coordinate rhLatt ({nrhs,1,clatt[0], clatt[1], clatt[2], clatt[3]});
Coordinate rhLatt2({nrhs,1,cclatt[0],cclatt[1],cclatt[2],cclatt[3]});
GridCartesian *CoarseMrhs = new GridCartesian(rhLatt, rhSimd,rhMpi);
GridCartesian *CoarseCoarseMrhs = new GridCartesian(rhLatt2,rhSimd,rhMpi);
GridParallelRNG RNG5(FGrid); RNG5.SeedFixedIntegers({5,6,7,8});
LatticeGaugeField Umu(UGrid);
std::cout << GridLogMessage << "Reading gauge field" << std::endl;
FieldMetaData header;
std::string file("/ccs/home/poare/ckpoint_lat.1000");
NerscIO::readConfiguration(Umu,header,file);
MobiusFermionD Ddwf(Umu,*FGrid,*FrbGrid,*UGrid,*UrbGrid,mass,M5,b,c);
MobiusFermionD Dpv (Umu,*FGrid,*FrbGrid,*UGrid,*UrbGrid,1.0, M5,b,c);
typedef PVdagMLinearOperator<MobiusFermionD,LatticeFermionD> PVdagM_t;
typedef ShiftedPVdagMLinearOperator<MobiusFermionD,LatticeFermionD> ShiftedPVdagM_t;
// Level 1 tensor types
typedef GeneralCoarsenedMatrix<vSpinColourVector,vTComplex,nbasis> LittleDiracOperator;
typedef MultiGeneralCoarsenedMatrix<vSpinColourVector,vTComplex,nbasis> MrhsLittleDiracOperator;
typedef LittleDiracOperator::CoarseVector CoarseVector;
typedef Aggregation<vSpinColourVector,vTComplex,nbasis> Subspace;
// Level 2 tensor types (coarsening deepens the nest by one iScalar -- see CLAUDE.md)
typedef CoarseVector::vector_object CoarseSiteObj;
typedef iScalar<vTComplex> vTTComplex;
typedef GeneralCoarsenedMatrix<CoarseSiteObj,vTTComplex,nbasis> LittleDiracOperatorL2;
typedef MultiGeneralCoarsenedMatrix<CoarseSiteObj,vTTComplex,nbasis> MrhsLittleDiracOperatorL2;
typedef LittleDiracOperatorL2::CoarseVector CoarseCoarseVector;
typedef Aggregation<CoarseSiteObj,vTTComplex,nbasis> SubspaceL2;
PVdagM_t PVdagM(Ddwf,Dpv);
ShiftedPVdagM_t ShiftedPVdagM(FineSmootherShift,Ddwf,Dpv);
NextToNearestStencilGeometry5D geom (Coarse5d);
NextToNearestStencilGeometry5D geom2(CoarseCoarse5d); // 33-point at L2->L3, matching SVDdefl
//////////////////////////////////////////////////////////////////////
// Subspace: load RAW (no Orthogonalise!), or generate.
//////////////////////////////////////////////////////////////////////
std::string subspace_file = "/lustre/orion/phy157/proj-shared/phy157_dwf/paboyle/subspace_nb"
+ std::to_string(nbasis) + ".scidac";
if ( getenv("SUBSPACE_FILE") ) subspace_file = std::string(getenv("SUBSPACE_FILE"));
uint64_t file_exists=0;
if ( UGrid->IsBoss() ){ std::ifstream f(subspace_file); file_exists=f.good()?1:0; }
UGrid->GlobalSum(file_exists);
const int cb=0;
Subspace AggregatesGCR(Coarse5d,FGrid,cb);
if ( file_exists ){
std::cout << GridLogMessage << "*** Loading subspace from disk (kept RAW) ***" << std::endl;
loadSubspace(AggregatesGCR.subspace, subspace_file);
} else {
std::cout << GridLogMessage << "*** GCR subspace generation ***" << std::endl;
AggregatesGCR.CreateSubspaceGCR(RNG5,PVdagM,nbasis);
saveSubspace(AggregatesGCR.subspace, subspace_file);
}
// RAW copy of the fine null vectors BEFORE CoarsenOperator block-orthonormalises in place.
std::vector<LatticeFermionD> rawNull(nbasis,FGrid);
for(int k=0;k<nbasis;k++) rawNull[k]=AggregatesGCR.subspace[k];
//////////////////////////////////////////////////////////////////////
// Coarsen L1->L2 and L2->L3 with SINGLE-RHS machinery, import into the mrhs
// operators via CopyMatrix. The single-RHS L1->L2 coarse operator must stay
// alive to be the "fine" operator for the L2->L3 coarsening, so BOTH single-RHS
// ops (and their padded _A) live in one scope and free together. [MEMORY: this
// is the setup peak -- L1->L2 padded _A (~large at 2^4) + L2->L3 padded _A.]
//////////////////////////////////////////////////////////////////////
MrhsLittleDiracOperator mrhsLittleDiracOpPV(geom, CoarseMrhs);
MrhsLittleDiracOperatorL2 mrhsLittleDiracOpL2(geom2, CoarseCoarseMrhs);
MultiRHSBlockProject<LatticeFermionD> MrhsProjector;
MultiRHSBlockProject<CoarseVector> MrhsProjectorL2;
{
// --- L1->L2 single-RHS coarse operator (kept alive for the L2->L3 coarsening) ---
LittleDiracOperator LittleDiracOpPV(geom,FGrid,Coarse5d);
LittleDiracOpPV.CoarsenOperator(PVdagM, AggregatesGCR); // orthonormalises AggregatesGCR.subspace in place
mrhsLittleDiracOpPV.CopyMatrix(LittleDiracOpPV);
MrhsProjector.Allocate(nbasis,FGrid,Coarse5d);
MrhsProjector.ImportBasis(AggregatesGCR.subspace); // orthonormalised, matches the coarse op
NonHermitianLinearOperator<LittleDiracOperator,CoarseVector> LinOpCoarse(LittleDiracOpPV);
// --- psi_coarse = P^dag (RAW fine null) -> Galerkin images, NOT e_k ---
std::vector<CoarseVector> psi_coarse(nbasis,Coarse5d);
for(int k=0;k<nbasis;k++) AggregatesGCR.ProjectToSubspace(psi_coarse[k], rawNull[k]);
rawNull.clear(); rawNull.shrink_to_fit();
{
RealD s2=0.0;
for(int i=0;i<nbasis;i++) for(int j=0;j<nbasis;j++){
ComplexD sij=TensorRemove(innerProduct(psi_coarse[i],psi_coarse[j]));
ComplexD d=sij-(i==j?ComplexD(1.0):ComplexD(0.0)); s2+=real(d)*real(d)+imag(d)*imag(d);
}
std::cout<<GridLogMessage<<"GUARD: ||<psi_coarse|psi_coarse> - I||_F = "<<std::sqrt(s2)
<<" (~0.23 good; ~sqrt(N_coarse)="<<std::sqrt((double)Coarse5d->gSites())<<" = e_k leak)"<<std::endl;
}
// --- L2->L3 single-RHS coarsening (coarsen the single-RHS LinOpCoarse) ---
SubspaceL2 AggregatesL2(CoarseCoarse5d,Coarse5d,cb);
for(int k=0;k<nbasis;k++) AggregatesL2.subspace[k]=psi_coarse[k];
LittleDiracOperatorL2 LittleDiracOpL2(geom2,Coarse5d,CoarseCoarse5d);
LittleDiracOpL2.CoarsenOperator(LinOpCoarse, AggregatesL2);
mrhsLittleDiracOpL2.CopyMatrix(LittleDiracOpL2);
MrhsProjectorL2.Allocate(nbasis,Coarse5d,CoarseCoarse5d);
MrhsProjectorL2.ImportBasis(AggregatesL2.subspace); // orthonormalised by CoarsenOperator
// --- guard psi_cc (RAW psi_coarse; AggregatesL2 holds a separate orthonormalised copy) ---
{
std::vector<CoarseCoarseVector> psi_cc(nbasis,CoarseCoarse5d);
for(int k=0;k<nbasis;k++) AggregatesL2.ProjectToSubspace(psi_cc[k], psi_coarse[k]);
RealD s2=0.0;
for(int i=0;i<nbasis;i++) for(int j=0;j<nbasis;j++){
ComplexD sij=TensorRemove(innerProduct(psi_cc[i],psi_cc[j]));
ComplexD d=sij-(i==j?ComplexD(1.0):ComplexD(0.0)); s2+=real(d)*real(d)+imag(d)*imag(d);
}
std::cout<<GridLogMessage<<"GUARD: ||<psi_cc|psi_cc> - I||_F = "<<std::sqrt(s2)
<<" (~0.23 good; ~sqrt(N_cc)="<<std::sqrt((double)CoarseCoarse5d->gSites())<<" = e_k leak)"<<std::endl;
}
} // both single-RHS ops + padded _A + AggregatesL2 + psi_coarse freed here
NonHermitianLinearOperator<MrhsLittleDiracOperator,CoarseVector> mrhsLinOpCoarse(mrhsLittleDiracOpPV);
NonHermitianLinearOperator<MrhsLittleDiracOperatorL2,CoarseCoarseVector> mrhsLinOpCC(mrhsLittleDiracOpL2);
//////////////////////////////////////////////////////////////////////
// Solvers, innermost first.
//////////////////////////////////////////////////////////////////////
TrivialPrecon<CoarseVector> simpleC;
TrivialPrecon<CoarseCoarseVector> simpleCC;
TrivialPrecon<LatticeFermionD> simple_fine;
// L3 (coarse-coarse) solve: PGCR on the 6D cc operator
PrecGeneralisedConjugateResidualNonHermitian<CoarseCoarseVector>
L3PGCR(L3Tol,L3MaxIt,mrhsLinOpCC,simpleCC,L3Nstep,L3Nstep);
L3PGCR.Level(3);
L3PGCR.Name("CCouter");
L3PGCR.SetZeroGuess(1); // caller zeroes CCsol
// L2 coarse smoother: shifted 6D coarse op, fixed nstep
ShiftedLinearOperator<CoarseVector> ShiftedMrhsCoarse(CoarseSmootherShift, mrhsLinOpCoarse);
PrecGeneralisedConjugateResidualNonHermitian<CoarseVector>
CoarseSmootherGCR(0.01,1,ShiftedMrhsCoarse,simpleC,CoarseSmootherNstep,CoarseSmootherNstep);
CoarseSmootherGCR.Level(2);
CoarseSmootherGCR.Name("Csmoother");
CoarseSmootherGCR.SetZeroGuess(1); // caller zeroes vec2
// L2->L3 V-cycle preconditioner (operates on 6D coarse field)
MrhsCoarseThreeLevelPrec<CoarseVector,CoarseCoarseVector>
L2to3Precon(mrhsLinOpCoarse, CoarseSmootherGCR, MrhsProjectorL2, L3PGCR,
Coarse5d, CoarseCoarse5d, CoarseCoarseMrhs, nrhs);
// L2 coarse solve: PGCR on 6D coarse op, preconditioned by the L2->L3 V-cycle
PrecGeneralisedConjugateResidualNonHermitian<CoarseVector>
L2PGCR(CoarseSolverTol, CoarseSolverOrder/16, mrhsLinOpCoarse, L2to3Precon, 16, 16);
L2PGCR.Level(2);
L2PGCR.Name("Couter");
L2PGCR.SetZeroGuess(1); // caller zeroes CsolMrhs
// Fine smoother (per-rhs, looped in the L1->L2 V-cycle)
PrecGeneralisedConjugateResidualNonHermitian<LatticeFermionD>
SmootherGCR(0.0,1,ShiftedPVdagM,simple_fine,FineSmootherOrder,FineSmootherOrder);
SmootherGCR.Level(1);
SmootherGCR.Name("Fsmoother");
SmootherGCR.SetZeroGuess(1); // caller zeroes vec2[r]
// L1->L2 V-cycle (fine); its coarse solve is the three-level L2PGCR
typedef PrecGeneralisedConjugateResidualNonHermitian<LatticeFermionD> FineSmoother_t;
MrhsTwoLevelMG<LatticeFermionD,CoarseVector,FineSmoother_t>
ThreeLevelPrecon(PVdagM, SmootherGCR, MrhsProjector, L2PGCR, Coarse5d, CoarseMrhs);
// Outer mrhs solve
MrhsPGCRNonHermitian<LatticeFermionD>
L1PGCR(OuterTol,1000,PVdagM,ThreeLevelPrecon,OuterMmax,OuterNstep);
L1PGCR.Level(1);
L1PGCR.Name("Fouter");
L1PGCR.SetZeroGuess(1); // sol[r]=Zero() at source setup
//////////////////////////////////////////////////////////////////////
// Sources and solve
//////////////////////////////////////////////////////////////////////
std::vector<LatticeFermionD> src(nrhs,FGrid), sol(nrhs,FGrid);
for(int r=0;r<nrhs;r++){ gaussian(RNG5,src[r]); sol[r]=Zero(); }
std::cout << GridLogMessage << "**********************************************" << std::endl;
std::cout << GridLogMessage << " MultiRHS THREE-level solve: " << nrhs << " RHS " << std::endl;
std::cout << GridLogMessage << "**********************************************" << std::endl;
GridStopWatch w; w.Start();
L1PGCR(src,sol);
w.Stop();
std::cout << GridLogMessage << "MultiRHS 3-level solve total " << w.Elapsed()
<< " (per RHS: " << w.useconds()/1.0e6/nrhs << " s)" << std::endl;
{ LatticeFermionD Ax(FGrid); RealD worst=0.0;
for(int r=0;r<nrhs;r++){ PVdagM.Op(sol[r],Ax); Ax=Ax-src[r];
RealD rn=std::sqrt(norm2(Ax)/norm2(src[r]));
std::cout << GridLogMessage << "FINAL: rhs["<<r<<"] true residual = " << rn << std::endl;
worst=std::max(worst,rn); }
std::cout << GridLogMessage << "FINAL: worst-case residual = " << worst << std::endl;
}
std::cout << GridLogMessage << "Done" << std::endl;
Grid_finalize();
return 0;
}
File diff suppressed because it is too large Load Diff
+4 -2
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@@ -3,6 +3,9 @@
* without regression / tests being applied
*/
#include "disable_examples_without_instantiations.h"
#ifdef ENABLE_FERMION_INSTANTIATIONS
#include <Grid/Grid.h>
using namespace std;
@@ -535,5 +538,4 @@ int main (int argc, char ** argv)
Grid_finalize();
}
#endif
+4 -2
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@@ -3,6 +3,9 @@
* without regression / tests being applied
*/
#include "disable_examples_without_instantiations.h"
#ifdef ENABLE_FERMION_INSTANTIATIONS
#include <Grid/Grid.h>
using namespace std;
@@ -429,5 +432,4 @@ int main (int argc, char ** argv)
Grid_finalize();
}
#endif
@@ -0,0 +1,15 @@
#include <Grid/Grid.h>
#pragma once
#ifndef ENABLE_FERMION_INSTANTIATIONS
#include <iostream>
int main(void) {
std::cout << "This build of Grid was configured to exclude fermion instantiations, "
<< "which this example relies on. "
<< "Please reconfigure and rebuild Grid with --enable-fermion-instantiations"
<< "to run this example."
<< std::endl;
return 1;
}
#endif
+1 -1
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@@ -11,7 +11,7 @@ CCFILES=`find . -name '*.cc' -not -path '*/instantiation/*/*' -not -path '*/gamm
ZWILS_FERMION_FILES=` find . -name '*.cc' -path '*/instantiation/*' -path '*/instantiation/ZWilsonImpl*' `
WILS_FERMION_FILES=` find . -name '*.cc' -path '*/instantiation/*' -path '*/instantiation/WilsonImpl*' `
STAG_FERMION_FILES=` find . -name '*.cc' -path '*/instantiation/*' -path '*/instantiation/Staggered*' `
STAG_FERMION_FILES=` find . -name '*.cc' -path '*/instantiation/*' -path '*/instantiation/StaggeredImpl*' `
GP_FERMION_FILES=` find . -name '*.cc' -path '*/instantiation/*' -path '*/instantiation/Gparity*' `
ADJ_FERMION_FILES=` find . -name '*.cc' -path '*/instantiation/*' -path '*/instantiation/WilsonAdj*' `
TWOIND_FERMION_FILES=`find . -name '*.cc' -path '*/instantiation/*' -path '*/instantiation/WilsonTwoIndex*'`
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---
name: communication-overlap
description: Design and implement communication/computation overlap pipelines for GPU+MPI codes — per-packet event tracking, host-staging through pinned memory, internode/intranode bandwidth separation, and the 7-phase pipeline pattern that replaces broken accelerator-aware MPI paths.
user-invocable: true
allowed-tools:
- Read
- Bash(grep -r)
---
# Communication/Computation Overlap Pipeline Design
## Why GPU-Direct MPI Is Often Not the Right Default
GPU-direct RDMA (passing GPU buffer pointers directly to MPI) is appealing because it eliminates explicit D2H/H2D copies. In practice on several leadership systems:
- **Bandwidth**: RDMA at 30% of wirespeed has been observed on Pontevecchio/Aurora. The overhead of staging through pinned host memory can be *lower* total latency than slow RDMA.
- **Correctness**: Device buffer aliasing in `MPI_Sendrecv` (see `mpi-heterogeneous.md`) makes direct GPU-to-GPU transfer unreliable.
- **Overlap**: Host-staging enables fine-grained overlap — each packet's D2H can be issued as a separate asynchronous event, and the corresponding MPI send can fire as soon as *that packet* arrives in host memory, not after all packets are ready.
The pipeline pattern below was developed to replace broken MPICH accelerator-aware paths. It achieves genuine computation/communication overlap by tracking per-packet GPU events.
## The 7-Phase Pipeline
Given a set of halo exchange operations (each identified by a `packet_index`):
### Phase 0: Prepare data on device
Pack halo data into contiguous GPU buffers. One buffer per direction/neighbour.
### Phase 1: Post receives + start D2H
Post all `MPI_Irecv` calls immediately (into pinned host buffers). Simultaneously, start asynchronous D2H copies for all send buffers:
```cpp
for (auto &pkt : send_packets) {
MPI_Irecv(pkt.host_recv_buf, pkt.bytes, MPI_BYTE,
pkt.src_rank, pkt.tag, comm, &pkt.recv_req);
acceleratorCopyFromDeviceAsync(pkt.device_send_buf,
pkt.host_send_buf,
pkt.bytes, &pkt.d2h_event);
}
```
The key: `pkt.d2h_event` is a per-packet GPU event (e.g. `cudaEvent_t`, `hipEvent_t`, or SYCL event). We can poll individual packet completion rather than waiting for all.
### Phase 2: Fire sends as D2H completes (packet by packet)
Poll packet D2H events. As each packet becomes ready in host memory, immediately fire the corresponding `MPI_Isend`. Also start intranode D2D copies at this point — these are deferred until now to avoid competing with the internode D2H on PCIe bandwidth:
```cpp
bool all_sent = false;
while (!all_sent) {
all_sent = true;
for (auto &pkt : send_packets) {
if (!pkt.sent && acceleratorEventIsComplete(pkt.d2h_event)) {
MPI_Isend(pkt.host_send_buf, pkt.bytes, MPI_BYTE,
pkt.dst_rank, pkt.tag, comm, &pkt.send_req);
pkt.sent = true;
start_intranode_copy(pkt); // now safe, D2H is done
}
if (!pkt.sent) all_sent = false;
}
}
```
### Phase 3: Poll receives + start H2D as each arrives
`MPI_Test` individual receive requests. As each completes, immediately start the H2D copy into device-resident halo buffer:
```cpp
bool all_recvd = false;
while (!all_recvd) {
all_recvd = true;
for (auto &pkt : recv_packets) {
if (!pkt.h2d_started) {
int flag = 0;
MPI_Test(&pkt.recv_req, &flag, MPI_STATUS_IGNORE);
if (flag) {
acceleratorCopyToDeviceAsync(pkt.host_recv_buf,
pkt.device_recv_buf,
pkt.bytes, &pkt.h2d_event);
pkt.h2d_started = true;
}
}
if (!pkt.h2d_started) all_recvd = false;
}
}
```
### Phase 4: Wait for all sends
```cpp
std::vector<MPI_Request> send_reqs;
for (auto &pkt : send_packets) send_reqs.push_back(pkt.send_req);
MPI_Waitall(send_reqs.size(), send_reqs.data(), MPI_STATUSES_IGNORE);
```
### Phase 5: Wait for all H2D copies
```cpp
for (auto &pkt : recv_packets) acceleratorEventWait(pkt.h2d_event);
```
### Phase 6: Run interior computation
The interior (non-halo) computation can run from Phase 1 onwards, overlapped with all of the above:
```cpp
// Launched in Phase 1, runs in parallel with the pipeline
accelerator_for(ss, interior_sites, ...) { compute_interior(ss); }
```
Synchronise with interior before using the full field:
```cpp
accelerator_barrier(); // interior kernel done
// Halo H2D is also complete (Phase 5 above)
// Now safe to use full field
```
## Per-Packet Event Tracking Data Structure
```cpp
struct Packet {
// Buffers
void *device_send_buf;
void *host_send_buf; // pinned
void *device_recv_buf;
void *host_recv_buf; // pinned
size_t bytes;
// MPI
int src_rank, dst_rank, tag;
MPI_Request send_req, recv_req;
// GPU events (one per packet, not one global barrier)
AcceleratorEvent d2h_event;
AcceleratorEvent h2d_event;
// State flags
bool sent = false;
bool h2d_started = false;
};
```
The critical design point: `d2h_event` and `h2d_event` are **per-packet**, not global. This allows the MPI send for packet 0 to fire while packet 1's D2H is still in progress.
## Internode vs Intranode Separation
PCIe (GPU-to-CPU) and NVLink/xGMI (GPU-to-GPU within a node) are separate bandwidth resources. They do not compete with each other, but they *do* compete with each other for transactions if both are active simultaneously.
Strategy: complete all internode D2H copies first (to maximise NIC injection bandwidth), then start intranode D2D copies (which use NVLink/xGMI and do not contend with PCIe for internode traffic):
```cpp
// In Phase 2: start intranode D2D only after D2H is confirmed complete
if (pkt.is_intranode && pkt.d2h_done) {
// Use peer access (cudaMemcpyPeerAsync / hipMemcpyPeerAsync)
// rather than staging through host for intranode
cudaMemcpyPeerAsync(pkt.peer_recv_buf, pkt.dst_device,
pkt.device_send_buf, pkt.src_device,
pkt.bytes, computeStream);
}
```
Grid reference: `Grid/communicator/Communicator_mpi3.cc` — search for `NVLINK_GET` and `ACCELERATOR_AWARE_MPI` conditional blocks.
## Pinned Memory Allocation
All host staging buffers must be pinned (page-locked) for async D2H/H2D:
```cpp
// CUDA
cudaMallocHost(&host_buf, bytes);
cudaFreeHost(host_buf);
// HIP
hipHostMalloc(&host_buf, bytes, hipHostMallocDefault);
hipHostFree(host_buf);
// SYCL
host_buf = sycl::malloc_host(bytes, *queue);
sycl::free(host_buf, *queue);
```
Pre-allocate at startup. Repeated `cudaMallocHost` in the hot path adds latency from the OS memory manager.
## Checksumming in the Pipeline
Insert checksum computation before D2H (on the GPU-resident data) and verification after H2D (on the received GPU-resident data). See `correctness-verification.md` for the checksum pattern. The salting (`packet_index + 1000 * tag`) detects packet transposition — critical for diagnosing MPI buffer aliasing bugs where two packets' contents are swapped.
## Smoke Test for a New System
Before running physics, validate the pipeline on a synthetic benchmark:
```cpp
// Send a buffer of known values, receive and check
// Run at multiple message sizes: 4KB, 64KB, 1MB, 16MB
// Run at multiple process counts: 2, 8, 64, 512
// Verify checksums on every packet
// Measure bandwidth: should be ≥ 80% of FDR/HDR/NDR peak for host-staged
```
Any bandwidth below 50% of theoretical, or any checksum failure, indicates a problem in the communication stack that must be resolved before production runs.
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---
name: compiler-validation
description: Identify GPU compiler code generation bugs, distinguish them from hardware and runtime bugs, construct minimal reproducers, and validate correctness of generated assembly for performance-critical HPC kernels.
user-invocable: true
allowed-tools:
- Read
- Bash(grep -r)
- Bash(objdump)
---
# Compiler Validation for GPU HPC Codes
## Why Compiler Bugs Are Distinct
Compiler bugs have a unique diagnostic signature: they produce *deterministically wrong* results. The same input always produces the same wrong output. This distinguishes them from:
- Hardware bugs: usually stochastic (wrong answer sometimes, correct answer other times)
- Runtime bugs (premature barrier, buffer aliasing): often stochastic or history-dependent
- Race conditions: non-deterministic
**The determinism test**: run the same kernel 100 times with the same input. If the wrong answer is always the same wrong answer, suspect the compiler.
## The Minimal Reproducer Protocol
When a kernel produces wrong results, isolate the compiler as quickly as possible:
**Step 1: Eliminate the physics**. Reduce the failing kernel to the smallest possible computation that still exhibits the bug. Replace QCD fields with `double` arrays. Replace lattice operations with scalar arithmetic. The goal is a 20-line CUDA/HIP/SYCL file that any compiler engineer can compile and run.
**Step 2: Binary search over optimisation levels**. Compile at `-O0` (or equivalent). If the answer becomes correct, the bug is in an optimisation pass. Then test `-O1`, `-O2`, `-O3` individually to find which optimisation level introduces the bug.
```bash
# HIP example
hipcc -O0 minimal_repro.cc -o test_O0 && ./test_O0 # should be correct
hipcc -O1 minimal_repro.cc -o test_O1 && ./test_O1 # compare
hipcc -O2 minimal_repro.cc -o test_O2 && ./test_O2 # compare
```
**Step 3: Identify the optimisation pass**. For LLVM-based compilers (clang, hipcc, dpcpp, nvcc via ptxas):
```bash
# Disable individual optimisation passes:
hipcc -O2 -mllvm -disable-loop-unrolling minimal_repro.cc -o test
hipcc -O2 -fno-vectorize minimal_repro.cc -o test
hipcc -O2 -fno-slp-vectorize minimal_repro.cc -o test
```
**Step 4: Inspect the generated code**. For CUDA/HIP, use `--generate-line-info` and `cuobjdump` or `roc-obj-extract` to get annotated assembly:
```bash
# CUDA
nvcc -O2 --generate-line-info --keep minimal_repro.cu
cuobjdump --dump-ptx minimal_repro.o
# HIP/ROCm
hipcc -O2 --save-temps minimal_repro.cc
llvm-objdump -d minimal_repro.o
# SYCL/DPC++
icpx -O2 -fsycl -Xclang -ast-dump minimal_repro.cc 2>&1 | grep -A5 "suspicious_expr"
```
Look for: incorrect register spill/fill sequences, loop trip count miscalculation, vectorisation across iteration boundaries, incorrect address arithmetic.
## Known Compiler Bug Patterns in GPU Code
### Register Pressure / Spill Bugs
High register usage forces spills to local memory. Some compiler versions generate incorrect spill/fill code — the value is written to local memory but a stale register value is read back instead of the spilled value.
**Signature**: Wrong answer with high-register-count kernels; becomes correct when `--maxrregcount=N` forces lower register count (more spilling) or higher (`--maxrregcount=256`, fewer spills).
**Diagnostic**: Check register usage:
```bash
nvcc -O2 --ptxas-options=-v minimal_repro.cu 2>&1 | grep "registers"
hipcc -O2 --offload-arch=gfx90a --save-temps minimal_repro.cc
llvm-mc --arch=amdgcn minimal_repro.s 2>&1 | grep "VGPRs"
```
### Vectorisation Across Loop Boundaries
The compiler vectorises two successive loop iterations as a SIMD unit when they have a data dependency that the compiler has incorrectly determined does not exist.
**Signature**: Wrong answer that becomes correct when the loop body is extracted to a non-inlined function (disabling auto-vectorisation across iterations).
### Incorrect Constant Propagation
The compiler evaluates a compile-time expression incorrectly, substituting a wrong constant. Common in template-heavy code where `sizeof(T)` or `alignof(T)` is used in arithmetic that the compiler folds at compile time.
**Signature**: Wrong array index or wrong stride. Inspecting the generated assembly shows a literal constant where you expect a computed value.
## Stress Patterns for Compiler Validation
These patterns exercise the compiler in ways that commonly expose bugs:
```cpp
// 1. Aliased pointer write followed by immediate read
// (tests correct handling of write-after-write in register allocation)
__global__ void alias_stress(double *a, double *b, int n) {
int i = blockIdx.x * blockDim.x + threadIdx.x;
if (i < n) {
a[i] = a[i] * 2.0;
b[i] = a[i] + 1.0; // must read the updated value, not the original
}
}
// 2. Mixed-precision accumulation
// (tests correct type promotion in FMA sequences)
__global__ void precision_stress(float *in, double *out, int n) {
double acc = 0.0;
for (int i = 0; i < n; i++) acc += (double)in[i];
*out = acc;
}
// 3. Large struct in shared memory
// (tests alignment and offset calculation for non-power-of-2-sized objects)
struct S { double x[3]; }; // sizeof = 24 bytes, not a power of 2
__global__ void struct_stress(S *in, S *out, int n) {
extern __shared__ S smem[];
int tid = threadIdx.x;
smem[tid] = in[tid];
__syncthreads();
out[tid] = smem[(tid + 1) % blockDim.x];
}
```
## Separating Compiler from Runtime/Hardware
When results are deterministically wrong:
| Test | Compiler bug | Runtime/hardware bug |
|---|---|---|
| Recompile at -O0 | Fixes it | No effect |
| Run on CPU (host code equivalent) | Fixes it | No effect |
| Reorder loop iterations | Changes wrong answer | No effect or different pattern |
| Different compiler version | Fixes or changes wrong answer | No effect |
| Different GPU of same model | Same wrong answer | Different or no error |
| Different GPU model | Fixes it (ISA-specific codegen bug) | May or may not fix |
## Reporting to Compiler Teams
A compiler bug report needs:
1. Minimal reproducer (< 50 lines)
2. Compiler version (`hipcc --version`, `nvcc --version`, `icpx --version`)
3. GPU model and driver version
4. Exact wrong and correct answers (hexfloat for reproducibility)
5. Which compile flags change the behaviour
6. Generated assembly for the correct and incorrect variants
File with: LLVM Bugzilla (for hipcc/clang/dpcpp backends), NVIDIA bug portal (nvcc/ptxas), or vendor-specific developer forum. The minimal reproducer is the single most important element — without it, compiler teams cannot prioritise.
## Pragmatic In-Production Workaround
When a compiler bug is confirmed but the fix is not yet available, the lowest-risk workaround is to mark the affected function with reduced optimisation:
```cpp
#pragma clang optimize off // clang/hipcc/dpcpp
void __attribute__((optimize("O0"))) affected_kernel_host_wrapper() { ... }
// For device code, use per-file compilation flags via CMake/Makefile
```
Document the workaround with a comment referencing the compiler bug report number so it can be removed when the compiler is updated.
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---
name: correctness-verification
description: Implement application-level correctness verification for HPC codes on unreliable hardware — double-run pattern, deterministic reductions, per-packet checksums, and flight recorder step logging.
user-invocable: true
allowed-tools:
- Read
- Bash(grep -r)
---
# Correctness Verification Infrastructure for HPC Codes
## The Problem
Leadership computing facilities sometimes have hardware or firmware bugs below the level visible to application code. The accelerator runtime can return from `q.wait()` or `cudaDeviceSynchronize()` before work is actually complete, or silently produce wrong answers in DMA transfers. Standard testing does not catch these because they are non-deterministic and often topology-dependent (fail only at specific process counts or on specific node configurations).
The symptoms look like numerical instabilities, random MPI hangs, or wrong physics results — not like crashes. Without deliberate infrastructure, diagnosing root cause takes months.
## The Double-Run Pattern
The most reliable correctness check for non-deterministic hardware bugs is to run every computation twice and compare bit-identical fingerprints.
**Key constraint**: the second run must use a *deterministic* code path. Non-deterministic floating-point ordering (e.g. from MPI_Allreduce with different reduction trees on retry) produces false mismatches. See `mpi-heterogeneous.md` for how to make reductions deterministic.
```cpp
// Pseudocode: double-run a step and compare CRC fingerprints
void run_step_verified(State &state) {
state.save_checkpoint();
uint64_t crc_a = run_step_and_fingerprint(state);
state.restore_checkpoint();
uint64_t crc_b = run_step_and_fingerprint(state);
if (crc_a != crc_b) {
report_mismatch("step", crc_a, crc_b);
// Policy: abort, retry from checkpoint, or continue with alarm
}
}
```
**Fingerprinting**: XOR-fold a CRC32 over all floating-point data after each step. XOR is order-independent, so it works across distributed nodes without communication. For field data:
```cpp
uint64_t fingerprint(const double *data, size_t n) {
uint64_t acc = 0;
for (size_t i = 0; i < n; i++) {
uint64_t bits;
memcpy(&bits, &data[i], sizeof(bits));
acc ^= crc32(bits);
}
return acc;
}
```
On GPU, compute the XOR reduction on-device (avoids D2H transfer of the full field):
```cpp
// SYCL
uint64_t svm_xor(uint64_t *vec, uint64_t L) {
uint64_t ret = 0;
{ sycl::buffer<uint64_t,1> abuff(&ret, {1});
theGridAccelerator->submit([&](sycl::handler &cgh) {
auto R = sycl::reduction(abuff, cgh, uint64_t(0), std::bit_xor<>());
cgh.parallel_for(sycl::range<1>{L}, R,
[=](sycl::id<1> i, auto &sum) { sum ^= vec[i]; });
}); }
theGridAccelerator->wait();
return ret;
}
```
## Per-Packet Communication Checksums
Silent data corruption in MPI buffers (documented in MPICH with device-resident buffers; see `mpi-heterogeneous.md`) requires per-packet verification, not just end-to-end. The pattern:
1. Before packing a send buffer, compute a GPU-side checksum of the payload.
2. Append the checksum to the host staging buffer alongside the data.
3. After receiving and copying to device, recompute the checksum on-device and compare.
Salt each checksum with `packet_index + 1000 * mpi_tag` to detect transposition (packet A landing in packet B's slot):
```cpp
uint64_t salt = (uint64_t)packet_index + 1000ULL * mpi_tag;
checksum_send = checksum_gpu(payload_gpu, payload_words) ^ salt;
// ... transmit payload + checksum_send ...
checksum_recv = checksum_gpu(payload_gpu_recv, payload_words) ^ salt;
assert(checksum_recv == checksum_send);
```
Grid reference: `Grid/communicator/Communicator_mpi3.cc`, `#ifdef GRID_CHECKSUM_COMMS`.
## Flight Recorder: Step-Level Logging
Maintain a monotonic counter that names the current operation. On a hang, this is the only way to know *which* operation the process is stuck in without a debugger.
```cpp
struct FlightRecorder {
std::atomic<uint64_t> step_counter{0};
const char *step_name = "init";
void step_log(const char *name) {
step_name = name;
step_counter.fetch_add(1, std::memory_order_relaxed);
}
};
extern FlightRecorder gRecorder;
```
In Record mode, also store floating-point norms and communication checksums to vectors. In Verify mode, compare against stored values:
```cpp
void norm_log(double val) {
if (mode == Record) norm_log_vec.push_back(val);
if (mode == Verify) {
double expected = norm_log_vec[norm_counter];
if (val != expected) { // bit-exact for deterministic paths
std::cerr << "MISMATCH at step " << step_counter
<< " (" << step_name << "): "
<< std::hexfloat << val << " vs " << expected << "\n";
print_backtrace();
}
norm_counter++;
}
}
```
Grid reference: `Grid/util/FlightRecorder.h`, `Grid/util/FlightRecorder.cc`.
## Signal Handler for Hang Detection
Install a SIGHUP handler that dumps the current flight recorder state. This is async-safe only if the handler writes to a pre-allocated buffer using `write()` (not `printf`):
```cpp
static char hang_buf[4096];
static void sighup_handler(int) {
int n = snprintf(hang_buf, sizeof(hang_buf),
"rank=%d step=%llu name=%s\n",
mpi_rank,
(unsigned long long)gRecorder.step_counter.load(),
gRecorder.step_name);
write(STDERR_FILENO, hang_buf, n);
// Optional: call backtrace_symbols_fd (async-safe on Linux)
void *frames[64];
int depth = backtrace(frames, 64);
backtrace_symbols_fd(frames, depth, STDERR_FILENO);
}
// In main():
signal(SIGHUP, sighup_handler);
```
To diagnose a hang across all ranks: `kill -HUP $(pgrep my_app)` or via job scheduler.
## What to Verify at Each Step
| Data type | Fingerprint method | Frequency |
|---|---|---|
| Lattice fields | XOR of CRC32 over float64 words | Every algorithmic step |
| Communication buffers | GPU XOR reduction, salted | Every MPI operation |
| Scalar reductions | Bit-exact match of double | Every GlobalSum |
| Iteration counters | Exact integer match | Every solver iteration |
## When to Abort vs Continue
- **Abort immediately**: communication checksum mismatch (data is corrupt, continuing will silently propagate errors).
- **Log and continue**: norm mismatch in Verify mode if you need to map out which operations are unreliable.
- **Retry from checkpoint**: double-run mismatch when the underlying bug is non-deterministic (second retry will usually pass).
Track the mismatch rate over a production run. A rate above ~1/1000 steps indicates a systemic hardware issue that should be escalated to the facility.
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---
name: gpu-memory-performance
description: Diagnose and fix GPU memory bandwidth and occupancy problems in Grid HPC kernels — acceleratorThreads() pitfalls, LambdaApply thread mapping, coalescedRead/Write idiom, when to use accelerator_for vs a hand-rolled __global__ kernel, and fused vs staged HBM access patterns.
user-invocable: true
allowed-tools:
- Read
- Bash(grep -r)
---
# GPU Memory Performance in Grid
## Nsimd on GPU builds
With `GEN_SIMD_WIDTH=64B` (the typical production setting), `Nsimd` is **not 1**:
| Scalar type | `sizeof` | `Nsimd = 64 / sizeof` |
|---|---|---|
| `ComplexD` | 16 B | **4** |
| `ComplexF` | 8 B | **8** |
| `RealD` | 8 B | **8** |
| `RealF` | 4 B | **16** |
So for `LatticePropagatorD` (scalar type `ComplexD`), `Nsimd=4` and the SIMD lane runs `threadIdx.x ∈ {0,1,2,3}`. True `Nsimd=1` scalar-GPU builds are the exception, not the rule.
## The acceleratorThreads() Trap
`acceleratorThreads()` is a runtime-settable global (default **8**) that controls the `blockDim.y` of every `accelerator_for` launch. It is NOT the SIMD width — it is the number of sites processed per block in the y-dimension.
```cpp
// Grid/threads/Accelerator.cc
uint32_t accelerator_threads = 8;
```
With `accelerator_for(ss, osites, nsimd, ...)`, the launch is:
```
dim3 threads(nsimd, acceleratorThreads(), 1)
dim3 blocks ((osites + acceleratorThreads() - 1) / acceleratorThreads(), 1, 1)
```
Total threads per block = `Nsimd × acceleratorThreads()`. With `GEN_SIMD_WIDTH=64B` and `Nsimd=8` (fp32 / ComplexF):
| `acceleratorThreads()` | threads/block | AMD wavefront | note |
|---|---|---|---|
| 2 (original default) | 16 | 25% | sub-wavefront, poor |
| 4 | 32 | 50% | half wavefront |
| **8 (current default)** | **64** | **100%** | **one full wavefront — Dslash sweet spot** |
| 16 | 128 | 200% | two wavefronts/block; register-pressure cliff for heavy kernels |
| 32 | 256 | 400% | severe register spill for stencil kernels |
**Why 8 and not higher?** Compute-heavy kernels like the Domain Wall Dslash carry many live registers per thread (spinors + gauge links + projections). Doubling `acceleratorThreads` from 8→16 doubles the register demand per block, which on AMD GFX90A triggers a hard occupancy cliff: `Benchmark_dwf_fp32` drops from 1.7 TF/s (nt=8) to ~300 GF/s (nt=16). The sweet spot is one full wavefront per block, which with `Nsimd=8` (fp32) means `nt=8`.
For fp64 work (`Nsimd=4`), `nt=8` gives 32 threads = half a wavefront (AMD pads to 64 with idle lanes). Kernels that are not register-limited (e.g. simple lattice arithmetic) can benefit from `--accelerator-threads 16` at runtime. Reduction kernels bypass `acceleratorThreads()` entirely via `getNumBlocksAndThreads`.
**Why was the default ever 2?** Before the `threadIdx.x`/`threadIdx.y` remap (see LambdaApply section below), the site index lived in `threadIdx.x` — the fast, coalescing dimension. Increasing `acceleratorThreads` widened the block in the *site* direction, so adjacent threads in a warp hit adjacent sites, each stride `sizeof(vobj)` apart in AoS memory — breaking coalescing. On early NVIDIA ports with `Nsimd≈8`, `nt=2` gave 16 threads = 50% of a 32-thread warp; NVIDIA recovers this via multiple concurrent blocks per SM, so occupancy was barely tolerable. AMD has no such multiplier when blocks are already sub-wavefront. After the remap put the site index in `threadIdx.y` and the SIMD lane in `threadIdx.x`, coalescing became independent of `acceleratorThreads`, removing the constraint.
**Diagnostic**: observed bandwidth << peak, kernel time >> expected from data volume. Check with `--accelerator-threads 32` at runtime. A large speedup confirms occupancy starvation.
**Fix options** (in order of preference):
1. Kernel needs its own thread count — use `getNumBlocksAndThreads` and launch a `__global__` kernel directly (see below).
2. Temporarily acceptable: set `--accelerator-threads 32` at the application level. Note this affects every `accelerator_for` site in the binary.
## LambdaApply Thread Mapping
`accelerator_for` and `accelerator_for2d` go through `LambdaApply`:
```cpp
// HIP/CUDA LambdaApply kernel:
uint64_t x = threadIdx.y + blockDim.y * blockIdx.x; // iter1 (site index)
uint64_t y = threadIdx.z + blockDim.z * blockIdx.y; // iter2
uint64_t z = threadIdx.x; // lane (SIMD lane)
Lambda(x, y, z);
```
`threadIdx.x` is the **fast** (lane) dimension — consecutive thread IDs within a warp/wavefront correspond to consecutive lane values on the **same** site, not consecutive sites.
With `GEN_SIMD_WIDTH=64B` and `Nsimd=4` (PropagatorD), a 64-thread AMD wavefront contains 64/4 = 16 sites, each processed by 4 lanes. Adjacent threads within the wavefront read different lanes of the same site — this is a broadcast pattern (hardware handles this efficiently), not a stride. The stride between consecutive *sites* (`sizeof(vobj)`) only appears between groups of `Nsimd` threads, spaced `Nsimd` apart in threadIdx.x — not between adjacent threads within a warp.
## coalescedRead / coalescedWrite
These are Grid's canonical way to read/write one SIMD lane from a vector type inside a `GRID_SIMT` kernel:
```cpp
// accelerator_for(ss, osites, Nsimd, {
// lane = acceleratorSIMTlane(Nsimd) = threadIdx.x ∈ {0..Nsimd-1}
auto scalar_val = coalescedRead(field[ss]); // extractLane(lane, field[ss])
coalescedWrite(field[ss], scalar_val); // insertLane(lane, field[ss], scalar_val)
```
For `vobj` aggregate types, `coalescedRead` calls `extractLane(lane, vobj)` which recurses through the tensor hierarchy and returns `vobj::scalar_object`.
For `vsimd` (raw SIMD vector) types, it casts to `scalar_type*` and indexes with `lane`.
## Coalescing the Iteration Structure
For an AoS input array where each site is `words` 16-byte elements, adjacent threads reading the same site's consecutive words achieve coalesced access:
```cpp
// Good: k varies across threads in a block → consecutive 16-byte reads
accelerator_for2d(k, R, ss, osites, Nsimd, {
coalescedWrite(out[ss]._internal[k],
coalescedRead(idat[ss * words + base + k]));
});
// dim3(Nsimd, nt, 1): threadIdx.y = k (consecutive words, coalesced)
// threadIdx.x = lane (SIMD sub-lane, coalesced for Nsimd>1)
```
```cpp
// Bad: each thread reads all R words of its site serially
accelerator_for(ss, osites, 1, {
Bundle b;
for (int k = 0; k < R; k++)
b._internal[k] = idat[ss * words + base + k]; // serial, not coalesced across threads
out[ss] = b; // bulk struct write
});
```
The bad pattern also accumulates a large struct in registers (192 bytes for R=12), increasing register pressure and reducing occupancy further.
## When to Use a __global__ Kernel Instead of accelerator_for
`accelerator_for` is correct for site-parallel work where `acceleratorThreads()` is tuned appropriately. Use a direct `__global__` kernel when:
- The kernel requires a **specific thread count** for correctness or performance (reductions, shared-memory algorithms).
- The optimal thread count depends on `sizeof(sobj)` and `sharedMemPerBlock`, not on a runtime global.
- You need the retirement-count pattern for cross-block final reduction.
Pattern: use `getNumBlocksAndThreads` to pick `numThreads` and `numBlocks`:
```cpp
Integer numThreads, numBlocks;
int ok = getNumBlocksAndThreads(n, sizeof(sobj), numThreads, numBlocks);
// starts at warpSize (32/64), doubles while 2*threads*sizeof(sobj) < sharedMemPerBlock
// gives 64256 threads/block → correct occupancy independent of acceleratorThreads()
Integer smemSize = numThreads * sizeof(sobj);
myKernel<<<numBlocks, numThreads, smemSize, computeStream>>>(args...);
```
Grid's `reduceKernel` uses this pattern and achieves ~400 GB/s on MI250X.
## Fused vs Staged HBM Access
A staged pack+reduce reads the data **three times**:
```
pack kernel: reads vobj array (N bytes), writes bundle buffer (N bytes)
reduce kernel: reads bundle buffer (N bytes), writes tiny result buffer
```
Total HBM: 3N bytes for N bytes of useful input.
A fused kernel reads the data **once**:
```
packReduceKernel: reads R words of vobj array (N bytes), reduces in-place
```
Total HBM: N bytes. Register pressure increases (R words held per thread) but the 3× HBM saving dominates for large objects.
The fused pattern in Grid's `sumD_gpu_reduce_words<R>`:
```cpp
template <int R, class vobj, class sobj, class Iterator>
__device__ void packReduceBlocks(
const iScalar<typename vobj::vector_type> *idat,
sobj *g_odata, Iterator osites, int base, int words)
{
// sobj = iVector<iScalar<scalarD>, R> (R double-precision scalars per site)
constexpr Iterator nsimd = vobj::Nsimd();
...
while (i < osites * nsimd) {
Iterator lane = i % nsimd;
Iterator ss = i / nsimd;
sobj tmpD; zeroit(tmpD);
for (int k = 0; k < R; k++) {
auto w = extractLane(lane, idat[ss * words + base + k]);
iScalar<typename vobj::scalar_typeD> wd; wd = w; // float→double promotion
tmpD._internal[k] = wd;
}
mySum += tmpD;
...
}
reduceBlock(sdata, mySum, tid);
}
```
Launched with `getNumBlocksAndThreads` → 128 threads/block for R=12 (`BundleScalarD`=192 B, sharedMem=64 KB) → correct occupancy without depending on `acceleratorThreads()`.
## Observed Numbers on MI250X (32^4 LatticePropagatorD, Nsimd=4, GEN_SIMD_WIDTH=64B)
| Configuration | pack µs/group | reduce µs/group | total µs | GB/s |
|---|---|---|---|---|
| acceleratorThreads=2 (8 threads/block), staged | 10,080 | 470 | 126,909 | 50 |
| acceleratorThreads=16 (64 threads/block), staged | 342 | 310 | 8,251 | 297 |
| acceleratorThreads=16, fused (128 threads/block via getNumBlocksAndThreads) | — | 349 | 4,584 | 546 |
The fused kernel at 349 µs/group reads 201 MB at 576 GB/s — 36% of MI250X HBM peak. The remaining gap from peak is the in-kernel serial loop over R=12 words and the 12 serial kernel launches.
## Quick Checklist When a Kernel Is Slow
1. **Check Nsimd**: `GEN_SIMD_WIDTH=64B` → Nsimd=4 (ComplexD), 8 (ComplexF). Total threads/block = `Nsimd × acceleratorThreads()`. With old default nt=2 and Nsimd=4: 8 threads = 12.5% of AMD wavefront.
2. Check threads per block: for `accelerator_for` kernels use `--accelerator-threads 32` and measure; a large speedup confirms occupancy starvation.
3. Check for bulk struct accumulation in registers (`Bundle b; for(...) b._internal[k] = ...;`). Replace with per-element writes via `coalescedWrite`.
4. Check for staged HBM access (pack → buffer → reduce). Count the passes; fuse if ≥ 2 passes over the same data.
5. For reduction kernels, always use `getNumBlocksAndThreads` rather than `accelerator_for` so thread count is independent of `acceleratorThreads()`.
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---
name: gpu-runtime-correctness
description: Detect and work around GPU runtime correctness failures — premature completion signalling, infinite poll hangs, stale completion flags, and the double-wait diagnostic pattern. Covers CUDA, HIP/ROCm, and SYCL/Level Zero runtimes.
user-invocable: true
allowed-tools:
- Read
- Bash(grep -r)
---
# GPU Runtime Correctness
## The Completion Signalling Problem
GPU runtimes expose a synchronisation primitive — `cudaDeviceSynchronize()`, `hipDeviceSynchronize()`, `q.wait()` — that is supposed to block until all previously submitted GPU work is complete. On several production systems, this guarantee has been violated in two distinct ways:
### Failure Mode A: Premature Return
The wait returns before the GPU work is done. The subsequent CPU code reads stale data from the output buffer. This is the most dangerous failure because it looks like a numerical instability, not a crash. Results are wrong but the program exits normally.
**Identifying Premature Return**: Insert a second, independent wait immediately after the first. If a second `q.wait()` "fixes" incorrect results that appeared with a single `q.wait()`, the first wait was returning prematurely.
```cpp
// Diagnostic version — if this stabilises results, you have premature return
accelerator_barrier(); // first wait
accelerator_barrier(); // second wait (diagnostic)
```
Production fix: submit a trivially cheap no-op kernel after the real work and wait for it. The no-op kernel cannot complete until all previous commands in the queue are done (command queue ordering guarantee), so waiting for the no-op is a stronger barrier than waiting for the queue itself:
```cpp
// Lightweight fence kernel
template<class T>
__global__ void noop_kernel(T *p) { if (threadIdx.x == 0) (void)(*p); }
void strong_barrier(T *device_ptr) {
noop_kernel<<<1, 1, 0, computeStream>>>(device_ptr);
cudaStreamSynchronize(computeStream); // wait for the no-op
}
```
### Failure Mode B: Infinite Poll
The wait enters a polling loop that never terminates. The process consumes 100% CPU in a runtime library. The GPU has either stopped signalling progress entirely, or the completion flag is in a memory region that has become incoherent.
This is distinct from Failure Mode A: with premature return the CPU proceeds; with infinite poll the CPU is stuck.
**Identifying Infinite Poll**: `top` shows the MPI rank at 100% CPU. `perf top -p PID` or `strace -p PID` shows the process burning cycles inside the GPU runtime library (e.g. `libze_intel_gpu.so`, `libamdhip64.so`).
**Documented instances**:
- Intel Level Zero on Pontevecchio (Aurora): both premature return *and* infinite poll have been observed as independent bugs on the same system.
- The two failure modes can co-exist and have overlapping symptoms at the application level.
## Completion Signalling Architecture
Understanding why these bugs happen requires knowing how completion signalling works:
```
GPU command processor
→ signals completion by writing to a host-visible memory address
→ CPU runtime polls that address (or uses OS event notification via ioctl)
```
A premature return means the memory write happened before the actual work completed (e.g. the signal is on a different command stream that has not been serialised with the work stream). An infinite poll means the memory write never happens (hardware or driver bug preventing the signal from being written).
**Implication**: `accelerator_barrier()` is not an unconditional correctness guarantee on all production systems. Application-level verification (double-run, checksums) is necessary as a second line of defence.
## The Double-Wait Pattern in Practice
The double-wait is a pragmatic workaround when premature return is suspected but not yet confirmed. It adds latency but does not change correctness if the barrier is working properly, so it is safe to enable in production:
```cpp
#ifdef WORKAROUND_PREMATURE_BARRIER
#define accelerator_barrier() do { \
real_accelerator_barrier(); \
real_accelerator_barrier(); \
} while(0)
#endif
```
Monitor whether this changes observed behaviour. If double-wait eliminates wrong answers, you have confirmed premature return. If it does not help but inserting a no-op kernel does, the issue is with the wait primitive specifically, not with the underlying completion signal.
## SYCL/Level Zero Specifics
Level Zero (the backend for Intel GPU runtimes) separates command submission from synchronisation. A `q.wait()` should wait for all previously submitted command lists to retire. Documented bugs include:
- `q.wait()` returning before the associated fence in Level Zero has been signalled.
- `q.wait()` entering an `ioctl(i915, I915_GEM_WAIT)` call that never returns (kernel driver bug, not runtime bug).
The latter requires a node reboot and cannot be worked around in application code. Detect it by checking process state (`D` in `ps aux`) and the kernel function via `/proc/PID/wchan`.
## Stream Ordering and Compute Streams
All GPU work must be submitted to the *same* stream/queue if you rely on in-order execution guarantees. Mixing default stream and non-default streams invalidates ordering assumptions on some backends.
Grid uses `computeStream` (CUDA/HIP) or `theGridAccelerator` (SYCL) consistently throughout. If mixing Grid with third-party GPU code, ensure the third-party code is directed to the same stream, or insert explicit inter-stream barriers.
## Checklist for New GPU Code
1. Every kernel launch is followed by an `accelerator_barrier()` before reading device-side output on the host.
2. All device-to-host copies use an explicit stream synchronisation after the copy, not before.
3. If results are non-deterministic across runs, insert a second barrier and observe whether reproducibility improves.
4. For correctness-critical operations (reductions that will be compared against reference values), add the double-run checksum test from `correctness-verification.md`.
5. If the process hangs at 100% CPU in a runtime library function, this is a driver/runtime bug — there is no application-level fix beyond scheduling a node reboot.
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---
name: hang-diagnosis
description: Diagnose and isolate process hangs on HPC systems — distinguishing kernel-level ioctl hangs, infinite poll loops, collective deadlocks, and GPU completion signalling failures using async-safe signal handlers and flight recorder step counters.
user-invocable: true
allowed-tools:
- Read
- Bash(grep -r)
- Bash(strace)
- Bash(gdb)
---
# Hang Diagnosis on HPC Systems
## Taxonomy of Hangs
Not all hangs are the same. Misidentifying the type leads to wrong mitigation. The four distinct classes encountered on production leadership systems:
### 1. Kernel-level ioctl hang (never returns)
The process is in `D` (uninterruptible sleep) state. `strace` shows it blocked in an `ioctl` syscall. The GPU device driver has entered an unrecoverable state.
**Diagnosis**: `ps aux | grep D` — the process shows `D` state. `cat /proc/PID/wchan` shows `i915_gem_wait_for_error` or similar.
**Resolution**: Only a driver reload or node reboot recovers it. Log the node identifier and request replacement from the facility scheduler.
### 2. Infinite poll loop (`q.wait()` or `cudaDeviceSynchronize()` never returns)
The process is in `R` (running) state, consuming 100% CPU. A polling loop inside the runtime is checking a completion flag that never becomes true, either because the hardware never sets it or because the flag is in a memory region not visible to the polling thread.
**Diagnosis**: `top` shows the rank at 100% CPU. `strace -p PID` shows repeated `futex` or `read` syscalls with zero-length results, or no syscalls at all (pure spinloop). `perf top -p PID` shows the process burning cycles in a single tight loop in a runtime library (e.g., `ze_intel_gpu.so`).
**Resolution**: The double-wait workaround — submit a trivially cheap kernel after the operation under test to act as a fence, then wait for the trivial kernel. See `gpu-runtime-correctness.md`.
### 3. Collective deadlock
One or more ranks are blocked in an MPI call, usually `MPI_Allreduce` or `MPI_Barrier`, while others are not. Root cause: a topology-dependent bug in the MPI library's collective algorithm where some ranks' contributions never arrive.
**Diagnosis**: Flight recorder step logs show some ranks at step N (inside the collective) while others are at step N+1 or stuck at step N with different `step_name` strings. The hung ranks will show `D` or `S` state in `ps`.
**Resolution**: Replace `MPI_Allreduce` with a deterministic point-to-point tree reduction. See `mpi-heterogeneous.md`.
### 4. Premature return from wait (silent wrong answer, not a hang)
The runtime returns from `q.wait()` before the GPU work is complete. The next operation reads stale data. This is not a hang — it manifests as a wrong answer or non-deterministic floating-point results. It is listed here because it is the most confusing failure mode: the code appears to run correctly and completes normally.
**Diagnosis**: Double-run with checksum (see `correctness-verification.md`). Insert a second `q.wait()` after the first and observe if results become reproducible. If inserting the second wait "fixes" wrong answers, the first wait was returning prematurely.
## Flight Recorder for Hang Localization
The most important diagnostic tool is knowing *which operation* a process is in when it hangs. Maintain a named step counter:
```cpp
// Call at the start of every major operation
FlightRecorder::StepLog("MPI_Allreduce::norm");
// ... do the operation ...
FlightRecorder::StepLog("MPI_Allreduce::done");
```
On SIGHUP, dump rank, step counter value, and step name to stderr in an async-safe manner:
```cpp
static void sighup_handler(int) {
char buf[256];
int n = snprintf(buf, sizeof(buf), "rank %d: step %llu '%s'\n",
comm_rank,
(unsigned long long)step_counter,
step_name);
write(2, buf, n);
// backtrace_symbols_fd is async-safe on Linux glibc
void *frames[32];
backtrace_symbols_fd(frames, backtrace(frames, 32), 2);
}
signal(SIGHUP, sighup_handler);
```
Broadcast SIGHUP to all ranks from outside the job:
```bash
# In a separate shell while the job is hung
squeue --job $JOBID -o "%i %N" | awk '{print $2}' | \
xargs -I{} ssh {} "pkill -SIGHUP -f my_application"
```
The step names from all ranks will reveal which collective operation has diverged.
## Distinguishing Driver Hang from MPI Hang
| Symptom | Driver hang | MPI hang |
|---|---|---|
| Process state | `D` (ioctl) or `R` (spinloop) | `S` (blocked in syscall) |
| `strace` | blocked `ioctl` or tight loop | blocked `recvmsg` / `read` |
| Scope | single rank / single node | subset of ranks, pattern-dependent |
| Recovery | reboot node | cancel job |
| Flight recorder | step name is a GPU operation | step name is a collective |
## Reducing Diagnostic Time
1. **Name every collective operation** in the flight recorder before calling it.
2. **Separate GPU work from MPI work** in the code so the step name unambiguously identifies which subsystem is hung.
3. **Log node identifiers** alongside step names so flaky nodes can be identified and blacklisted.
4. **Request flight recorder dumps from all ranks simultaneously** (SIGHUP broadcast) rather than attaching a debugger — attaching `gdb` to one rank of a hung MPI job usually deadlocks the debugger too.
## What Not to Do
- Do not `kill -9` a hung rank immediately — get the flight recorder dump first, otherwise diagnostic information is lost.
- Do not assume the first rank that prints an error is the faulty one — collective hangs are frequently caused by the *last* rank to arrive at the barrier.
- Do not use `MPI_Abort` in the hang handler — it may itself hang on some implementations. Use `_exit(1)` to force termination.
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---
name: mpi-heterogeneous
description: Diagnose and work around MPI correctness bugs on heterogeneous (CPU+GPU) systems — device buffer aliasing in MPI_Sendrecv, AARCH64 PLT corruption from libfabric, topology-dependent allreduce hangs, mixed-ABI HIP runtime from wrong GTL library (Frontier/ROCm), and deterministic point-to-point reduction trees as a replacement for MPI_Allreduce.
user-invocable: true
allowed-tools:
- Read
- Bash(grep -r)
---
# MPI Correctness on Heterogeneous HPC Systems
## The Core Problem
MPI libraries were designed for CPU-resident buffers. When GPU-resident buffers are passed directly (GPU-aware MPI / GPU direct RDMA), several correctness assumptions break:
- **Buffer aliasing**: The MPI library may internally alias send/receive buffer addresses for `MPI_Sendrecv` in ways that are safe for CPU memory but wrong for GPU memory with different cache coherency rules.
- **RDMA bandwidth**: GPU direct RDMA on some fabrics operates at a fraction of peak wirespeed (documented at ~30% on Pontevecchio/Aurora), making host-staging mandatory for performance even when correctness is not an issue.
- **Collective tree topology**: `MPI_Allreduce` implementations may select reduction trees based on process count or communicator topology that expose rank-ordering bugs, causing hangs on some configurations but not others.
## Bug Class 1: Device Buffer Aliasing in MPI_Sendrecv
**Symptom**: `MPI_Sendrecv` with GPU-resident send and receive buffers produces wrong results. The received data matches neither the expected payload nor a host-staged copy. The failure is *deterministic* for a given problem size and process count, but *history-dependent* — earlier sends affect which alias is selected.
**Root cause**: The MPI library internally reuses GPU buffer addresses for temporary staging without proper device memory ordering. When the same physical GPU memory pages appear in both the send and receive paths, writes from one path corrupt the other.
**Diagnosis**:
1. Enable per-packet checksumming (see `correctness-verification.md`). If the checksum on the received packet does not match the sent checksum, the data was corrupted in transit.
2. Replace `MPI_Sendrecv` with separate `MPI_Isend` + `MPI_Irecv` + `MPI_Waitall`. If this fixes the problem, the bug is in the `MPI_Sendrecv` implementation's internal buffer handling.
3. Stage through host memory (`cudaMemcpy`/`hipMemcpy` to a host buffer, then `MPI_Sendrecv` on host buffers, then copy back). If this fixes the problem, confirms GPU-specific aliasing.
**Reported as**: MPICH issue #7302. Affects MPICH on Intel Pontevecchio (Aurora) with device-resident buffers.
**Workaround**: Do not use `MPI_Sendrecv` with GPU buffers. Use asynchronous send/receive pairs or host-staging. See `communication-overlap.md` for the full pipeline pattern.
## Bug Class 2: PLT Corruption on AARCH64 (libfabric)
**Symptom**: Application crashes or hangs on first `MPI_Comm_dup` call on AARCH64 systems (e.g. NVIDIA Grace/H200). Backtrace shows a bad instruction in the PLT (Procedure Linkage Table) for `MPI_Comm_dup` — specifically a `br x15` instruction that should instead be a proper trampoline.
**Root cause**: `libfabric`'s memory registration cache monitor patches PLT entries at runtime to intercept memory allocation calls. Its AARCH64 trampoline generation writes an incorrect instruction sequence, leaving `br x15` (branch to whatever happens to be in x15) in the PLT entry. The next call through that PLT entry executes garbage.
**Diagnosis**:
```bash
# Check if the PLT entry is corrupted
objdump -d /proc/PID/exe | grep -A5 "MPI_Comm_dup@plt"
# Look for "br x15" — this should be a proper stub, not a register branch
```
Or check the disassembly of the live process:
```bash
gdb -p PID -batch -ex "disassemble 'MPI_Comm_dup@plt'"
```
**Workaround**:
```bash
export FI_MR_CACHE_MONITOR=disabled
```
This prevents libfabric from patching PLT entries. It may reduce MR cache performance but restores correctness.
**Reported as**: libfabric issue #11451. Affects systems using AARCH64 + libfabric OFI provider (Cray Slingshot, AWS EFA) with memory registration cache enabled.
## Bug Class 3: Topology-Dependent Allreduce Hangs
**Symptom**: `MPI_Allreduce` hangs indefinitely on some node configurations but completes correctly on others. The failure correlates with process count (e.g. fails at 512 ranks, works at 256) or network topology (fails when crossing specific router boundaries).
**Root cause**: The MPI library's collective selection algorithm picks a reduction tree implementation that assumes symmetric participation from all ranks. A bug in one rank's contribution path (e.g. a GPU-side buffer not yet flushed when MPI reads it, due to premature barrier — see `gpu-runtime-correctness.md`) causes that rank to send wrong or incomplete data, and the tree-reduction protocol deadlocks waiting for data that never arrives correctly.
**Diagnosis**: Flight recorder step logging (see `hang-diagnosis.md`). SIGHUP broadcast to all ranks. Ranks that are hung will show step name `MPI_Allreduce::...`; ranks that completed will show the next step. The hung ranks are the *recipients* of the stale data, not necessarily the *cause*.
**Workaround — deterministic P2P reduction tree**:
Replace `MPI_Allreduce` with an explicit point-to-point binary tree reduction. This is slower for large communicators but:
1. Is immune to topology-dependent collective bugs.
2. Is deterministic in floating-point ordering (the tree is fixed, not chosen at runtime).
3. Makes the hang location explicit — each P2P operation is a named step in the flight recorder.
```cpp
// Binary tree reduction: rank 0 collects, then broadcasts
void GlobalSumP2P(double *data, int count, MPI_Comm comm) {
int rank, size;
MPI_Comm_rank(comm, &rank); MPI_Comm_size(comm, &size);
// Reduce phase: even ranks receive from odd neighbours
for (int stride = 1; stride < size; stride *= 2) {
if (rank % (2*stride) == 0) {
int partner = rank + stride;
if (partner < size) {
std::vector<double> tmp(count);
MPI_Recv(tmp.data(), count, MPI_DOUBLE, partner, 0, comm, MPI_STATUS_IGNORE);
for (int i = 0; i < count; i++) data[i] += tmp[i];
}
} else if (rank % stride == 0) {
int partner = rank - stride;
MPI_Send(data, count, MPI_DOUBLE, partner, 0, comm);
break;
}
}
// Broadcast phase
for (int stride = /* highest power of 2 <= size */; stride >= 1; stride /= 2) {
if (rank % (2*stride) == 0) {
int partner = rank + stride;
if (partner < size)
MPI_Send(data, count, MPI_DOUBLE, partner, 0, comm);
} else if (rank % stride == 0) {
int partner = rank - stride;
MPI_Recv(data, count, MPI_DOUBLE, partner, 0, comm, MPI_STATUS_IGNORE);
}
}
}
```
Grid reference: `USE_GRID_REDUCTION` macro in `Grid/communicator/Communicator_mpi3.cc`.
## Bug Class 4: Mixed HIP ABI from Wrong GTL Library (Frontier / ROCm)
**Symptom**: `HIPFFT_PARSE_ERROR` (error code 12) returned by `hipfftPlanMany` / `hipfftMakePlanMany` / `hipfftPlan1d` for FFT sizes G < 32, but G ≥ 32 succeeds. The failure only occurs with an empty rocFFT kernel cache (`~/.cache/rocfft`); a warm cache may mask it. Host-side operations and GPU kernels that do not invoke rocFFT JIT work correctly.
**Root cause — mixed HIP ABI**: rocFFT uses JIT compilation (via `libamd_comgr`) for small transforms (G < 32); for G ≥ 32 it uses pre-compiled device code bundled in the library, so the JIT path is never exercised. When two HIP runtime versions are loaded in the same process — e.g. `libamdhip64.so.7` (ROCm 7) and `libamdhip64.so.6` (ROCm 6) — the rocFFT JIT cannot complete successfully.
The hidden source of the old library is the Cray MPI GPU Transport Layer. On Frontier, `cray-mpich`'s `libmpi_gtl_hsa.so` may be compiled against `libamdhip64.so.6` (ROCm 6 ABI) even when the loaded ROCm module is 7.0.2. Because `LD_LIBRARY_PATH` picks up the GTL directory before the ROCm 7 library directory, `libamdhip64.so.6` is pulled in first, and both ABI versions end up resident in the process.
**Diagnosis**:
```bash
# Check which libamdhip64 versions are actually linked into your binary at runtime
ldd --verbose ./your_binary 2>&1 | grep amdhip
# Bad output — two different .so versions:
# libamdhip64.so.6 => /opt/rocm-6.4.2/lib/libamdhip64.so.6
# libamdhip64.so.7 => /opt/rocm-7.0.2/lib/libamdhip64.so.7
# Good output — only one:
# libamdhip64.so.7 => /opt/rocm-7.0.2/lib/libamdhip64.so.7
```
If two versions appear, the problem is the GTL/LD_LIBRARY_PATH ordering.
**Fix — correct module stack and LD_LIBRARY_PATH ordering (Frontier)**:
```bash
module load cce/21.0.0
module load cpe/26.03
module load rocm/7.0.2
# Prepend CRAY_LD_LIBRARY_PATH so the ROCm-7-aware GTL is found first
export LD_LIBRARY_PATH=$CRAY_LD_LIBRARY_PATH:$LD_LIBRARY_PATH
# Ensure ROCm 7 LLVM libs (needed by libamd_comgr JIT) are on the path
export LD_LIBRARY_PATH=/opt/rocm-7.0.2/lib/llvm/lib/:$LD_LIBRARY_PATH
```
The critical step is prepending `CRAY_LD_LIBRARY_PATH`: this ensures the GTL library built against the ROCm 7 ABI is resolved before any older version that may appear further down `LD_LIBRARY_PATH`. Without this step, a stale symlink or directory ordering can silently load the wrong `libmpi_gtl_hsa.so`.
**Reproducer**: `tests/debug/Test_hipfft_repro.cc` — standalone hipFFT test (no Grid headers) that sweeps G and howmany values matching realistic Grid lattice geometries. Compile with:
```bash
hipcc -o Test_hipfft_repro Test_hipfft_repro.cc -lhipfft
rm -rf ~/.cache/rocfft # empty cache required to trigger JIT path
./Test_hipfft_repro
```
**Reference**: `systems/WorkArounds.txt`, Frontier section — GPU mapping, XPMEM, and `FI_MR_CACHE_MONITOR=disabled` settings for Frontier are documented there.
**Systems affected**: Frontier (ORNL, MI250X). Likely applies to any Cray PE system where the loaded `cray-mpich` GTL was compiled against an older ROCm ABI than the runtime ROCm module. LumiG (CSC, MI250X) uses the same Cray PE and may exhibit the same issue.
## Compile-Time Guard Structure
Recommended macro structure to switch between the workaround paths:
```cpp
// In configure / CMake, expose as options:
// ACCELERATOR_AWARE_MPI — use GPU direct (fast, potentially broken)
// GRID_CHECKSUM_COMMS — per-packet checksums (overhead: ~5%)
// USE_GRID_REDUCTION — P2P tree instead of MPI_Allreduce (slower, deterministic)
// FI_MR_CACHE_MONITOR — libfabric PLT workaround (env var, not compile-time)
```
On a known-good system, enable `ACCELERATOR_AWARE_MPI` and disable the others. On a system with known bugs, disable `ACCELERATOR_AWARE_MPI` and enable `GRID_CHECKSUM_COMMS` + `USE_GRID_REDUCTION` as needed.
## Escalation Checklist
Before concluding a bug is in your code:
1. [ ] Can you reproduce with a minimal reproducer (two MPI ranks, no physics code)?
2. [ ] Does the failure rate correlate with buffer size, process count, or network route?
3. [ ] Does staging through host memory eliminate the failure?
4. [ ] Is the failure deterministic for a given input (same answer, always wrong) or stochastic?
5. [ ] Does the failure appear on a different MPI implementation (e.g. OpenMPI vs MPICH)?
Deterministic wrong answers that reproduce with minimal reproducers and disappear with host-staging are strong evidence of an MPI library bug. File with the MPI library issue tracker with the minimal reproducer.
-1
View File
@@ -8,7 +8,6 @@ LIME=/p/home/jusers/boyle2/juwels/gm2dwf/boyle/
--disable-gparity \
--disable-fermion-reps \
--with-lime=$LIME \
--enable-accelerator-cshift \
--disable-unified \
CXX=nvcc \
LDFLAGS="-cudart shared " \
+104
View File
@@ -0,0 +1,104 @@
#!/bin/bash -l
# Node count scan. Everything that could confound the comparison is held
# fixed and only the number of Lustre clients changes:
#
# local volume 8.8.32.128 = 262144 sites x 576 B = 151 MB / rank
# aggregation k=2, row of 16, 8 extents of 18 MB (identical at
# every node count)
# old path contiguous run = lLattice[0]*576 = 4.6 KB (identical too)
#
# So the ratio of contiguous extent between the two layout preserving paths is
# a constant 4000x across the whole scan, and any change in their relative
# bandwidth is a property of the client count alone. That is the variable the
# 4 node runs could not move.
#
# Trim the tail of the run list if you want a smaller allocation; the
# geometries are independent.
#SBATCH --job-name=ioScale
#SBATCH --nodes=128
#SBATCH --ntasks-per-node=8
#SBATCH --cpus-per-task=7
#SBATCH --gpus-per-node=8
#SBATCH --time=02:00:00
#SBATCH --account=phy157_dwf
#SBATCH --gpu-bind=none
#SBATCH --exclusive
#SBATCH --mem=0
cat << EOF > select_gpu
#!/bin/bash
export GPU_MAP=(0 1 2 3 7 6 5 4)
export NUMA_MAP=(3 3 1 1 2 2 0 0)
export GPU=\${GPU_MAP[\$SLURM_LOCALID]}
export NUMA=\${NUMA_MAP[\$SLURM_LOCALID]}
unset ROCR_VISIBLE_DEVICES
export HIP_VISIBLE_DEVICES=\$GPU
rank=\$SLURM_PROCID
CMD="numactl -m \$NUMA -N \$NUMA \$*"
exec \$CMD
EOF
chmod +x ./select_gpu
SELECT=$SLURM_SUBMIT_DIR/select_gpu
root=$HOME/ParallelIO/systems/Frontier/
source ${root}/sourceme-rocm7.2.sh
export OMP_NUM_THREADS=7
export MPICH_GPU_SUPPORT_ENABLED=1
WORK=/lustre/orion/phy157/proj-shared/phy157_dwf/paboyle/aggscale.$SLURM_JOB_ID
mkdir -p $WORK
cd $WORK
# The largest rung writes three files of 154 GB, so budget ~700 GB for the
# whole scan and check the quota before submitting.
#
# Do NOT stripe by default. Measured on Frontier at 128 nodes / 1024 ranks,
# 154.6 GB record, best of 3 (MB/s):
#
# default layout lfs setstripe -c -1 -S 8M
# raw 97673 81728
# MPI-IO lexicographic 31675 77534
# aggregate 189535 86063
#
# The two layout preserving paths want opposite things. Wide striping is what
# rescues MPI-IO at scale, 32 -> 78 GB/s, which is presumably what careful
# striping has been buying in production. It costs the aggregate path a factor
# of 2.2, and costs raw as well. With the default layout MPI-IO plateaus at
# ~30 GB/s from 64 nodes upward -- the 20-40 GB/s seen in production -- while
# the aggregate path keeps scaling. Uncomment only to reproduce that.
#lfs setstripe -c -1 -S 8M $WORK
lfs getstripe -d $WORK # record the inherited layout; needed to read the numbers
BIN=$SLURM_SUBMIT_DIR/tests/IO/Test_aggregate_io
ARGS="--aggregate-target 4194304 --io-no-correctness --io-reps 3"
run () { # run <nodes> <grid> <mpi> <comment>
local nodes=$1 nranks=$(( $1 * 8 ))
echo
echo "==================================================================="
echo "=== SCAN nodes=$nodes ranks=$nranks grid=$2 mpi=$3 $4"
echo "==================================================================="
srun -N$nodes -n$nranks --ntasks-per-node=8 $SELECT $BIN --grid $2 --mpi $3 \
--accelerator-threads 8 --shm 2048 --device-mem 32000 $ARGS
echo "=== exit $?"
}
# nodes global lattice decomposition record
run 4 32.32.64.128 4.4.2.1 "4.8 GB"
run 8 32.32.64.256 4.4.2.2 "9.7 GB"
run 16 32.32.64.512 4.4.2.4 "19.3 GB"
run 32 32.32.128.512 4.4.4.4 "38.6 GB"
run 64 32.32.128.1024 4.4.4.8 "77.3 GB"
run 128 32.32.256.1024 4.4.8.8 "154.6 GB"
echo
echo "=== done. Files left in $WORK"
echo "=== For cold read numbers, submit a SECOND job on a fresh allocation"
echo "=== with WORK pointed at this directory and --io-read-only added to"
echo "=== ARGS. Reading back what this job wrote only measures page cache."
ls -l $WORK
+6 -4
View File
@@ -1,4 +1,5 @@
CLIME=`spack find --paths c-lime@2-3-9 | grep c-lime| cut -c 15-`
../../configure --enable-comms=mpi-auto \
--with-lime=$CLIME \
--enable-unified=no \
@@ -9,12 +10,13 @@ CLIME=`spack find --paths c-lime@2-3-9 | grep c-lime| cut -c 15-`
--disable-gparity \
--disable-fermion-reps \
--enable-simd=GPU \
--with-gmp=$OLCF_GMP_ROOT \
--with-mpfr=/opt/cray/pe/gcc/mpfr/3.1.4/ \
--with-openssl=$OPENSSL \
--with-gmp=$GMP \
--with-mpfr=$MPFR \
--disable-fermion-reps \
CXX=hipcc MPICXX=mpicxx \
CXXFLAGS="-fPIC -I${ROCM_PATH}/include/ -I${MPICH_DIR}/include -L/lib64 " \
LDFLAGS="-L/lib64 -L${ROCM_PATH}/lib -L${MPICH_DIR}/lib -lmpi -L${CRAY_MPICH_ROOTDIR}/gtl/lib -lmpi_gtl_hsa -lhipblas -lrocblas -lhipfft"
CXXFLAGS="-fPIC -I${ROCM_PATH}/include/ -I${MPICH_DIR}/include " \
LDFLAGS="-L${ROCM_PATH}/lib -L${MPICH_DIR}/lib -lmpi -lmpi_gtl_hsa -lhipblas -lrocsolver -lrocblas -lhipfft -lamdhip64"
+15
View File
@@ -0,0 +1,15 @@
echo spack
. /autofs/nccs-svm1_home1/paboyle/spack/share/spack/setup-env.sh
export CLIME=`spack find --paths c-lime | grep ^c-lime | awk '{print $2}' `
export MPFR=`spack find --paths mpfr | grep ^mpfr | awk '{print $2}' `
export OPENSSL=`spack find --paths openssl | grep openssl | awk '{print $2}' `
export GMP=`spack find --paths gmp | grep ^gmp | awk '{print $2}' `
module load cce/20.0.0
module load cpe/25.09
module load rocm/6.4.0
export LD_LIBRARY_PATH=$CRAY_LD_LIBRARY_PATH:$LD_LIBRARY_PATH
export LD_LIBRARY_PATH=/opt/rocm-6.4.0/lib/llvm/lib/:$LD_LIBRARY_PATH
module load emacs
+13
View File
@@ -0,0 +1,13 @@
echo spack
. /autofs/nccs-svm1_home1/paboyle/spack/share/spack/setup-env.sh
module load cce/21.0.0
module load cpe/26.03
module load rocm/7.0.2
export LD_LIBRARY_PATH=/opt/rocm-7.0.2/lib/llvm/lib/:$LD_LIBRARY_PATH
export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:$CRAY_LD_LIBRARY_PATH
module load emacs
+15
View File
@@ -0,0 +1,15 @@
echo spack
. /autofs/nccs-svm1_home1/paboyle/spack/share/spack/setup-env.sh
export CLIME=`spack find --paths c-lime | grep ^c-lime | awk '{print $2}' `
export MPFR=`spack find --paths mpfr | grep ^mpfr | awk '{print $2}' `
export OPENSSL=`spack find --paths openssl | grep openssl | awk '{print $2}' `
export GMP=`spack find --paths gmp | grep ^gmp | awk '{print $2}' `
module load cce/21.0.0
module load cpe/26.03
module load rocm/7.2.0
export LD_LIBRARY_PATH=/opt/rocm-7.2.0/lib/llvm/lib/:$LD_LIBRARY_PATH
export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:$CRAY_LD_LIBRARY_PATH
module load emacs
-25
View File
@@ -1,25 +0,0 @@
echo spack
. /autofs/nccs-svm1_home1/paboyle/Crusher/Grid/spack/share/spack/setup-env.sh
module load cce/15.0.1
module load rocm/5.3.0
module load cray-fftw
module load craype-accel-amd-gfx90a
#Ugly hacks to get down level software working on current system
export LD_LIBRARY_PATH=/opt/cray/libfabric/1.20.1/lib64/:$LD_LIBRARY_PATH
export LD_LIBRARY_PATH=/opt/gcc/mpfr/3.1.4/lib:$LD_LIBRARY_PATH
export LD_LIBRARY_PATH=`pwd`/:$LD_LIBRARY_PATH
ln -s /opt/rocm-6.0.0/lib/libamdhip64.so.6 .
#echo spack load c-lime
#spack load c-lime
#module load emacs
##module load PrgEnv-gnu
##module load cray-mpich
##module load cray-fftw
##module load craype-accel-amd-gfx90a
##export LD_LIBRARY_PATH=/opt/gcc/mpfr/3.1.4/lib:$LD_LIBRARY_PATH
#Hack for lib
##export LD_LIBRARY_PATH=`pwd`/:$LD_LIBRARY_PATH
+4 -5
View File
@@ -1,17 +1,16 @@
DIR=`pwd`
PREFIX=$DIR/../Prequisites/install/
../../configure \
--enable-comms=mpi \
--enable-simd=GPU \
--enable-shm=nvlink \
--enable-gen-simd-width=64 \
--with-gmp=$GMP \
--with-mpfr=$MPFR \
--enable-accelerator=cuda \
--enable-setdevice \
--disable-accelerator-cshift \
--with-gmp=$PREFIX \
--disable-fermion-reps \
--disable-unified \
--disable-gparity \
CXX=nvcc \
LDFLAGS="-cudart shared " \
CXXFLAGS="-ccbin CC -gencode arch=compute_80,code=sm_80 -std=c++14 -cudart shared"
CXXFLAGS="-ccbin CC -gencode arch=compute_80,code=sm_80 -std=c++17 -cudart shared"
+39
View File
@@ -0,0 +1,39 @@
#!/bin/bash
##SBATCH -A m5294_g
#SBATCH -A mp13_g
#m3886_g
#SBATCH -C gpu
#SBATCH -q premium
#SBATCH -t 00:20
#SBATCH -c 32
#SBATCH -N 384
#SBATCH -n 1536
#SBATCH --ntasks-per-node=4
#SBATCH --gpus-per-task=1
#SBATCH --exclusive
#SBATCH --gpu-bind=none
export SLURM_CPU_BIND="cores"
export MPICH_GPU_SUPPORT_ENABLED=1
export MPICH_RDMA_ENABLED_CUDA=1
export MPICH_GPU_IPC_ENABLED=1
export MPICH_GPU_EAGER_REGISTER_HOST_MEM=0
export MPICH_GPU_NO_ASYNC_MEMCPY=0
#export MPICH_SMP_SINGLE_COPY_MODE=CMA
cat << EOF > select_gpu
#!/bin/bash
export GPU_MAP=(0 1 2 3)
export NUMA_MAP=( 0 1 2 3 )
export GPU=\$SLURM_LOCALID
export NUMA=\$SLURM_LOCALID
export CUDA_VISIBLE_DEVICES=\$GPU
exec numactl -m \$NUMA -N \$NUMA \$*
EOF
chmod +x ./select_gpu
export VOL=128.128.128.288
OPT="--comms-overlap --shm-mpi 0"
srun ./select_gpu ./benchmarks/Benchmark_dwf_fp32 --mpi 4.8.4.12 --grid $VOL --device-mem 16000 --accelerator-threads 8 --shm 2048 $OPT

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