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68 Commits

Author SHA1 Message Date
27ea2afe86 No compile on comms == none fix 2017-10-30 01:14:11 +00:00
78e8704eac Shaking out 2017-10-30 00:25:31 +00:00
67131d82f2 Get subrank info from communicator constructor 2017-10-30 00:24:11 +00:00
615a9448b9 Extended sub comm supported 2017-10-30 00:23:34 +00:00
00164f5ce5 : 2017-10-30 00:22:52 +00:00
a7f72eb994 SHaking out 2017-10-30 00:22:06 +00:00
501fa1614a Communicator updates for split grid 2017-10-30 00:16:12 +00:00
5bf42e1e15 Update 2017-10-30 00:05:21 +00:00
fe4d9b003c More digits 2017-10-30 00:04:47 +00:00
4a699b4da3 New rank can be found out 2017-10-30 00:04:14 +00:00
689323f4ee Reverse dim ordering lexico support 2017-10-30 00:03:15 +00:00
84b441800f Merge branch 'develop' into feature/lanczos-reorg 2017-10-27 14:21:38 +01:00
1ef424b139 Split grid Y2K bug fix attempt 2017-10-27 14:20:35 +01:00
aa66f41c69 Bug fix in the coarse restore...
Think this is nearly there
2017-10-27 10:29:34 +01:00
f96c800d25 Passes reload of coarse basis 2017-10-27 09:43:22 +01:00
32a52d7583 Move the local coherence lanczos into algorithms.
Keep the I/O in the tester. Other people can copy this method to write other I/O formats.
2017-10-27 09:04:31 +01:00
fa04b6d3c2 Finished ? Verifying coarse evec restore 2017-10-27 08:18:29 +01:00
7fab183c0e Better read test 2017-10-27 08:17:49 +01:00
9ec9850bdb 64bit ftello update 2017-10-26 23:34:31 +01:00
0c4ddaea0b Cleaning up 2017-10-26 23:31:46 +01:00
00ebc150ad Mistake in string parse; interface is ambiguous and must fix. Is char * a file, or a XML buffer ? 2017-10-26 23:30:37 +01:00
0f3e9ae57d Gsites error. Only appeared (so far) in I/O code for even odd fields 2017-10-26 23:29:59 +01:00
034de160bf Staggered updates : Schur fixed and added a unit test for Test_staggered_cg_schur.cc giving stronger check 2017-10-26 20:58:46 +01:00
14507fd6e4 Final? candidate for push back on the lanczos reorg feature 2017-10-26 16:25:01 +01:00
2db05ac214 Test for split/unsplit in isolation 2017-10-26 07:48:03 +01:00
31f99574fa Moving these out of algorithms 2017-10-26 07:47:42 +01:00
a34c8a2961 Update to IRL; getting close to the structure I would like. 2017-10-26 07:45:56 +01:00
ccd20df827 Better IRL interface 2017-10-26 01:59:59 +01:00
e9be293444 Better messaging 2017-10-26 01:59:30 +01:00
d577211cc3 Relax stoppign condition 2017-10-25 23:57:54 +01:00
f4336e480a Faster converge time 2017-10-25 23:53:44 +01:00
e4d461cb03 Messagign 2017-10-25 23:53:19 +01:00
3d63b4894e Use existing functionality where possible 2017-10-25 23:52:47 +01:00
08583afaff Red black friendly coarsening 2017-10-25 23:51:18 +01:00
b395a312af Better error messaging 2017-10-25 23:50:37 +01:00
66295b99aa Bit less verbose SciDAC IO 2017-10-25 23:50:05 +01:00
b8654be0ef 64 bit safe offsets 2017-10-25 23:49:23 +01:00
a479325349 Rewrite of local coherence lanczos 2017-10-25 23:48:47 +01:00
f6c3f6bf2d XML serialisation of parms and initialise from parms object 2017-10-25 23:47:59 +01:00
d83868fdbb Identity linear op added -- useful in circumstances where a linear op may or may not be needed.
Supply a trivial one if not needed
2017-10-25 23:47:10 +01:00
303e0b927d Improvements for coarse grid compressed lanczos 2017-10-25 23:46:33 +01:00
28ba8a0f48 Force spacing more nicely 2017-10-25 23:45:57 +01:00
f9e28577f3 Merge branch 'develop' of https://github.com/paboyle/Grid into develop 2017-10-25 21:07:56 +01:00
8a3aae98f6 Solving minor bug in compilation 2017-10-25 10:34:49 +01:00
8309f2364b Solving again the MPI comm bug with FFTs 2017-10-25 10:24:14 +01:00
cac1750078 Merge branch 'develop' of https://github.com/paboyle/Grid into develop 2017-10-24 23:30:36 +01:00
27936900e6 Putting the FG verbosity in the Integrator level 2017-10-18 13:08:09 +01:00
e325929851 ALl codes compile against the new Lanczos call signature 2017-10-13 14:02:43 +01:00
47af3565f4 Logging improvement; reunified the Lanczos codes 2017-10-13 13:23:07 +01:00
4b4d187935 Reunified the Lanczos implementations 2017-10-13 13:22:44 +01:00
9aff354ab5 Final version prior to reunification 2017-10-13 13:22:26 +01:00
cb9ff20249 Approx tests and lanczos improvement 2017-10-13 11:30:50 +01:00
9fe6ac71ea Starting reorg of Blocked lanczos 2017-10-11 10:12:07 +01:00
f1fa00b71b Merge branch 'develop' of https://github.com/paboyle/Grid into develop 2017-10-10 14:26:44 +01:00
bf58557fb1 Block compressed Lanczos 2017-10-10 14:15:11 +01:00
10cb37f504 Merge branch 'develop' of https://github.com/paboyle/Grid into develop 2017-10-10 14:09:44 +01:00
1374c943d4 Correct Schur operator called 2017-10-10 13:59:50 +01:00
a1d80282ec cb factorise 2017-10-10 13:49:31 +01:00
4eb8bbbebe Christop mods 2017-10-10 13:48:51 +01:00
d1c6288c5f Merge branch 'develop' of https://github.com/paboyle/Grid into develop 2017-10-10 13:38:40 +01:00
dd949bc428 Merge branch 'feature/staggering' into develop 2017-10-10 13:02:51 +01:00
153672d8ec Split CG testing 2017-10-09 23:20:58 +01:00
08ca338875 Split grid communication 2017-10-09 23:19:45 +01:00
f7cbf82c04 Better stdout/err debug 2017-10-09 23:18:48 +01:00
07009c569a Comms splitting improvements 2017-10-09 23:16:51 +01:00
a6eeea777b Merge branch 'develop' of https://github.com/paboyle/Grid into develop 2017-09-21 10:12:41 +01:00
77f7737ccc Merge branch 'develop' of https://github.com/paboyle/Grid into develop 2017-09-19 14:28:01 +01:00
f9df685cde Merge branch 'hotfix/dirac-ITT-fix1' 2017-09-16 18:18:48 +01:00
51 changed files with 5269 additions and 535 deletions

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@ -550,6 +550,7 @@ AC_CONFIG_FILES(tests/forces/Makefile)
AC_CONFIG_FILES(tests/hadrons/Makefile)
AC_CONFIG_FILES(tests/hmc/Makefile)
AC_CONFIG_FILES(tests/solver/Makefile)
AC_CONFIG_FILES(tests/lanczos/Makefile)
AC_CONFIG_FILES(tests/smearing/Makefile)
AC_CONFIG_FILES(tests/qdpxx/Makefile)
AC_CONFIG_FILES(tests/testu01/Makefile)

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@ -103,29 +103,32 @@ namespace Grid {
GridBase *CoarseGrid;
GridBase *FineGrid;
std::vector<Lattice<Fobj> > subspace;
int checkerboard;
Aggregation(GridBase *_CoarseGrid,GridBase *_FineGrid) :
CoarseGrid(_CoarseGrid),
Aggregation(GridBase *_CoarseGrid,GridBase *_FineGrid,int _checkerboard) :
CoarseGrid(_CoarseGrid),
FineGrid(_FineGrid),
subspace(nbasis,_FineGrid)
subspace(nbasis,_FineGrid),
checkerboard(_checkerboard)
{
};
void Orthogonalise(void){
CoarseScalar InnerProd(CoarseGrid);
std::cout << GridLogMessage <<" Gramm-Schmidt pass 1"<<std::endl;
blockOrthogonalise(InnerProd,subspace);
std::cout << GridLogMessage <<" Gramm-Schmidt pass 2"<<std::endl;
blockOrthogonalise(InnerProd,subspace);
// std::cout << GridLogMessage <<" Gramm-Schmidt checking orthogonality"<<std::endl;
// CheckOrthogonal();
}
void CheckOrthogonal(void){
CoarseVector iProj(CoarseGrid);
CoarseVector eProj(CoarseGrid);
Lattice<CComplex> pokey(CoarseGrid);
for(int i=0;i<nbasis;i++){
blockProject(iProj,subspace[i],subspace);
eProj=zero;
for(int ss=0;ss<CoarseGrid->oSites();ss++){
parallel_for(int ss=0;ss<CoarseGrid->oSites();ss++){
eProj._odata[ss](i)=CComplex(1.0);
}
eProj=eProj - iProj;
@ -137,6 +140,7 @@ namespace Grid {
blockProject(CoarseVec,FineVec,subspace);
}
void PromoteFromSubspace(const CoarseVector &CoarseVec,FineField &FineVec){
FineVec.checkerboard = subspace[0].checkerboard;
blockPromote(CoarseVec,FineVec,subspace);
}
void CreateSubspaceRandom(GridParallelRNG &RNG){
@ -147,6 +151,7 @@ namespace Grid {
Orthogonalise();
}
/*
virtual void CreateSubspaceLanczos(GridParallelRNG &RNG,LinearOperatorBase<FineField> &hermop,int nn=nbasis)
{
// Run a Lanczos with sloppy convergence
@ -195,7 +200,7 @@ namespace Grid {
std::cout << GridLogMessage <<"subspace["<<b<<"] = "<<norm2(subspace[b])<<std::endl;
}
}
*/
virtual void CreateSubspace(GridParallelRNG &RNG,LinearOperatorBase<FineField> &hermop,int nn=nbasis) {
RealD scale;

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@ -207,7 +207,6 @@ namespace Grid {
void OpDir (const Field &in, Field &out,int dir,int disp) {
assert(0);
}
};
template<class Matrix,class Field>
class SchurDiagMooeeOperator : public SchurOperatorBase<Field> {
@ -265,7 +264,6 @@ namespace Grid {
return axpy_norm(out,-1.0,tmp,in);
}
};
template<class Matrix,class Field>
class SchurDiagTwoOperator : public SchurOperatorBase<Field> {
protected:
@ -294,8 +292,15 @@ namespace Grid {
return axpy_norm(out,-1.0,tmp,in);
}
};
//
///////////////////////////////////////////////////////////////////////////////////////////////////
// Left handed Moo^-1 ; (Moo - Moe Mee^-1 Meo) psi = eta --> ( 1 - Moo^-1 Moe Mee^-1 Meo ) psi = Moo^-1 eta
// Right handed Moo^-1 ; (Moo - Moe Mee^-1 Meo) Moo^-1 Moo psi = eta --> ( 1 - Moe Mee^-1 Meo ) Moo^-1 phi=eta ; psi = Moo^-1 phi
///////////////////////////////////////////////////////////////////////////////////////////////////
template<class Matrix,class Field> using SchurDiagOneRH = SchurDiagTwoOperator<Matrix,Field> ;
template<class Matrix,class Field> using SchurDiagOneLH = SchurDiagOneOperator<Matrix,Field> ;
///////////////////////////////////////////////////////////////////////////////////////////////////
// Staggered use
///////////////////////////////////////////////////////////////////////////////////////////////////
template<class Matrix,class Field>
class SchurStaggeredOperator : public SchurOperatorBase<Field> {
protected:
@ -303,9 +308,8 @@ namespace Grid {
public:
SchurStaggeredOperator (Matrix &Mat): _Mat(Mat){};
virtual void HermOpAndNorm(const Field &in, Field &out,RealD &n1,RealD &n2){
ComplexD dot;
n2 = Mpc(in,out);
dot= innerProduct(in,out);
ComplexD dot= innerProduct(in,out);
n1 = real(dot);
}
virtual void HermOp(const Field &in, Field &out){
@ -315,7 +319,7 @@ namespace Grid {
Field tmp(in._grid);
_Mat.Meooe(in,tmp);
_Mat.MooeeInv(tmp,out);
_Mat.MeooeDag(out,tmp);
_Mat.Meooe(out,tmp);
_Mat.Mooee(in,out);
return axpy_norm(out,-1.0,tmp,out);
}
@ -342,6 +346,14 @@ namespace Grid {
virtual void operator() (const Field &in, Field &out) = 0;
};
template<class Field> class IdentityLinearFunction : public LinearFunction<Field> {
public:
void operator() (const Field &in, Field &out){
out = in;
};
};
/////////////////////////////////////////////////////////////
// Base classes for Multishift solvers for operators
/////////////////////////////////////////////////////////////
@ -364,6 +376,64 @@ namespace Grid {
};
*/
////////////////////////////////////////////////////////////////////////////////////////////
// Hermitian operator Linear function and operator function
////////////////////////////////////////////////////////////////////////////////////////////
template<class Field>
class HermOpOperatorFunction : public OperatorFunction<Field> {
void operator() (LinearOperatorBase<Field> &Linop, const Field &in, Field &out) {
Linop.HermOp(in,out);
};
};
template<typename Field>
class PlainHermOp : public LinearFunction<Field> {
public:
LinearOperatorBase<Field> &_Linop;
PlainHermOp(LinearOperatorBase<Field>& linop) : _Linop(linop)
{}
void operator()(const Field& in, Field& out) {
_Linop.HermOp(in,out);
}
};
template<typename Field>
class FunctionHermOp : public LinearFunction<Field> {
public:
OperatorFunction<Field> & _poly;
LinearOperatorBase<Field> &_Linop;
FunctionHermOp(OperatorFunction<Field> & poly,LinearOperatorBase<Field>& linop)
: _poly(poly), _Linop(linop) {};
void operator()(const Field& in, Field& out) {
_poly(_Linop,in,out);
}
};
template<class Field>
class Polynomial : public OperatorFunction<Field> {
private:
std::vector<RealD> Coeffs;
public:
Polynomial(std::vector<RealD> &_Coeffs) : Coeffs(_Coeffs) { };
// Implement the required interface
void operator() (LinearOperatorBase<Field> &Linop, const Field &in, Field &out) {
Field AtoN(in._grid);
Field Mtmp(in._grid);
AtoN = in;
out = AtoN*Coeffs[0];
for(int n=1;n<Coeffs.size();n++){
Mtmp = AtoN;
Linop.HermOp(Mtmp,AtoN);
out=out+AtoN*Coeffs[n];
}
};
};
}

View File

@ -8,6 +8,7 @@
Author: Peter Boyle <paboyle@ph.ed.ac.uk>
Author: paboyle <paboyle@ph.ed.ac.uk>
Author: Christoph Lehner <clehner@bnl.gov>
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
@ -33,41 +34,12 @@ Author: paboyle <paboyle@ph.ed.ac.uk>
namespace Grid {
////////////////////////////////////////////////////////////////////////////////////////////
// Simple general polynomial with user supplied coefficients
////////////////////////////////////////////////////////////////////////////////////////////
template<class Field>
class HermOpOperatorFunction : public OperatorFunction<Field> {
void operator() (LinearOperatorBase<Field> &Linop, const Field &in, Field &out) {
Linop.HermOp(in,out);
};
};
template<class Field>
class Polynomial : public OperatorFunction<Field> {
private:
std::vector<RealD> Coeffs;
public:
Polynomial(std::vector<RealD> &_Coeffs) : Coeffs(_Coeffs) { };
// Implement the required interface
void operator() (LinearOperatorBase<Field> &Linop, const Field &in, Field &out) {
Field AtoN(in._grid);
Field Mtmp(in._grid);
AtoN = in;
out = AtoN*Coeffs[0];
// std::cout <<"Poly in " <<norm2(in)<<" size "<< Coeffs.size()<<std::endl;
// std::cout <<"Coeffs[0]= "<<Coeffs[0]<< " 0 " <<norm2(out)<<std::endl;
for(int n=1;n<Coeffs.size();n++){
Mtmp = AtoN;
Linop.HermOp(Mtmp,AtoN);
out=out+AtoN*Coeffs[n];
// std::cout <<"Coeffs "<<n<<"= "<< Coeffs[n]<< " 0 " <<std::endl;
// std::cout << n<<" " <<norm2(out)<<std::endl;
}
};
};
struct ChebyParams : Serializable {
GRID_SERIALIZABLE_CLASS_MEMBERS(ChebyParams,
RealD, alpha,
RealD, beta,
int, Npoly);
};
////////////////////////////////////////////////////////////////////////////////////////////
// Generic Chebyshev approximations
@ -82,8 +54,10 @@ namespace Grid {
public:
void csv(std::ostream &out){
RealD diff = hi-lo;
for (RealD x=lo-0.2*diff; x<hi+0.2*diff; x+=(hi-lo)/1000) {
RealD diff = hi-lo;
RealD delta = (hi-lo)*1.0e-9;
for (RealD x=lo; x<hi; x+=delta) {
delta*=1.1;
RealD f = approx(x);
out<< x<<" "<<f<<std::endl;
}
@ -99,6 +73,7 @@ namespace Grid {
};
Chebyshev(){};
Chebyshev(ChebyParams p){ Init(p.alpha,p.beta,p.Npoly);};
Chebyshev(RealD _lo,RealD _hi,int _order, RealD (* func)(RealD) ) {Init(_lo,_hi,_order,func);};
Chebyshev(RealD _lo,RealD _hi,int _order) {Init(_lo,_hi,_order);};
@ -193,6 +168,47 @@ namespace Grid {
return sum;
};
RealD approxD(RealD x)
{
RealD Un;
RealD Unm;
RealD Unp;
RealD y=( x-0.5*(hi+lo))/(0.5*(hi-lo));
RealD U0=1;
RealD U1=2*y;
RealD sum;
sum = Coeffs[1]*U0;
sum+= Coeffs[2]*U1*2.0;
Un =U1;
Unm=U0;
for(int i=2;i<order-1;i++){
Unp=2*y*Un-Unm;
Unm=Un;
Un =Unp;
sum+= Un*Coeffs[i+1]*(i+1.0);
}
return sum/(0.5*(hi-lo));
};
RealD approxInv(RealD z, RealD x0, int maxiter, RealD resid) {
RealD x = x0;
RealD eps;
int i;
for (i=0;i<maxiter;i++) {
eps = approx(x) - z;
if (fabs(eps / z) < resid)
return x;
x = x - eps / approxD(x);
}
return std::numeric_limits<double>::quiet_NaN();
}
// Implement the required interface
void operator() (LinearOperatorBase<Field> &Linop, const Field &in, Field &out) {

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@ -78,12 +78,12 @@ class ConjugateGradient : public OperatorFunction<Field> {
cp = a;
ssq = norm2(src);
std::cout << GridLogIterative << std::setprecision(4) << "ConjugateGradient: guess " << guess << std::endl;
std::cout << GridLogIterative << std::setprecision(4) << "ConjugateGradient: src " << ssq << std::endl;
std::cout << GridLogIterative << std::setprecision(4) << "ConjugateGradient: mp " << d << std::endl;
std::cout << GridLogIterative << std::setprecision(4) << "ConjugateGradient: mmp " << b << std::endl;
std::cout << GridLogIterative << std::setprecision(4) << "ConjugateGradient: cp,r " << cp << std::endl;
std::cout << GridLogIterative << std::setprecision(4) << "ConjugateGradient: p " << a << std::endl;
std::cout << GridLogIterative << std::setprecision(8) << "ConjugateGradient: guess " << guess << std::endl;
std::cout << GridLogIterative << std::setprecision(8) << "ConjugateGradient: src " << ssq << std::endl;
std::cout << GridLogIterative << std::setprecision(8) << "ConjugateGradient: mp " << d << std::endl;
std::cout << GridLogIterative << std::setprecision(8) << "ConjugateGradient: mmp " << b << std::endl;
std::cout << GridLogIterative << std::setprecision(8) << "ConjugateGradient: cp,r " << cp << std::endl;
std::cout << GridLogIterative << std::setprecision(8) << "ConjugateGradient: p " << a << std::endl;
RealD rsq = Tolerance * Tolerance * ssq;
@ -92,7 +92,7 @@ class ConjugateGradient : public OperatorFunction<Field> {
return;
}
std::cout << GridLogIterative << std::setprecision(4)
std::cout << GridLogIterative << std::setprecision(8)
<< "ConjugateGradient: k=0 residual " << cp << " target " << rsq << std::endl;
GridStopWatch LinalgTimer;

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@ -7,8 +7,9 @@
Copyright (C) 2015
Author: Peter Boyle <paboyle@ph.ed.ac.uk>
Author: Chulwoo Jung
Author: Guido Cossu
Author: paboyle <paboyle@ph.ed.ac.uk>
Author: Chulwoo Jung <chulwoo@bnl.gov>
Author: Christoph Lehner <clehner@bnl.gov>
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
@ -27,125 +28,282 @@ Author: Guido Cossu
See the full license in the file "LICENSE" in the top level distribution directory
*************************************************************************************/
/* END LEGAL */
#ifndef GRID_IRL_H
#define GRID_IRL_H
#ifndef GRID_BIRL_H
#define GRID_BIRL_H
#include <string.h> //memset
//#include <zlib.h>
#include <sys/stat.h>
namespace Grid {
namespace Grid {
enum IRLdiagonalisation {
IRLdiagonaliseWithDSTEGR,
IRLdiagonaliseWithQR,
IRLdiagonaliseWithEigen
};
////////////////////////////////////////////////////////////////////////////////
// Helper class for sorting the evalues AND evectors by Field
// Use pointer swizzle on vectors
////////////////////////////////////////////////////////////////////////////////
////////////////////////////////////////////////////////
// Move following 100 LOC to lattice/Lattice_basis.h
////////////////////////////////////////////////////////
template<class Field>
class SortEigen {
private:
static bool less_lmd(RealD left,RealD right){
return left > right;
}
static bool less_pair(std::pair<RealD,Field const*>& left,
std::pair<RealD,Field const*>& right){
return left.first > (right.first);
}
public:
void push(std::vector<RealD>& lmd,std::vector<Field>& evec,int N) {
////////////////////////////////////////////////////////////////////////
// PAB: FIXME: VERY VERY VERY wasteful: takes a copy of the entire vector set.
// : The vector reorder should be done by pointer swizzle somehow
////////////////////////////////////////////////////////////////////////
std::vector<Field> cpy(lmd.size(),evec[0]._grid);
for(int i=0;i<lmd.size();i++) cpy[i] = evec[i];
std::vector<std::pair<RealD, Field const*> > emod(lmd.size());
void basisOrthogonalize(std::vector<Field> &basis,Field &w,int k)
{
for(int j=0; j<k; ++j){
auto ip = innerProduct(basis[j],w);
w = w - ip*basis[j];
}
}
for(int i=0;i<lmd.size();++i) emod[i] = std::pair<RealD,Field const*>(lmd[i],&cpy[i]);
partial_sort(emod.begin(),emod.begin()+N,emod.end(),less_pair);
typename std::vector<std::pair<RealD, Field const*> >::iterator it = emod.begin();
for(int i=0;i<N;++i){
lmd[i]=it->first;
evec[i]=*(it->second);
++it;
template<class Field>
void basisRotate(std::vector<Field> &basis,Eigen::MatrixXd& Qt,int j0, int j1, int k0,int k1,int Nm)
{
typedef typename Field::vector_object vobj;
GridBase* grid = basis[0]._grid;
parallel_region
{
std::vector < vobj > B(Nm); // Thread private
parallel_for_internal(int ss=0;ss < grid->oSites();ss++){
for(int j=j0; j<j1; ++j) B[j]=0.;
for(int j=j0; j<j1; ++j){
for(int k=k0; k<k1; ++k){
B[j] +=Qt(j,k) * basis[k]._odata[ss];
}
}
for(int j=j0; j<j1; ++j){
basis[j]._odata[ss] = B[j];
}
}
}
void push(std::vector<RealD>& lmd,int N) {
std::partial_sort(lmd.begin(),lmd.begin()+N,lmd.end(),less_lmd);
}
// Extract a single rotated vector
template<class Field>
void basisRotateJ(Field &result,std::vector<Field> &basis,Eigen::MatrixXd& Qt,int j, int k0,int k1,int Nm)
{
typedef typename Field::vector_object vobj;
GridBase* grid = basis[0]._grid;
result.checkerboard = basis[0].checkerboard;
parallel_for(int ss=0;ss < grid->oSites();ss++){
vobj B = zero;
for(int k=k0; k<k1; ++k){
B +=Qt(j,k) * basis[k]._odata[ss];
}
result._odata[ss] = B;
}
bool saturated(RealD lmd, RealD thrs) {
return fabs(lmd) > fabs(thrs);
}
template<class Field>
void basisReorderInPlace(std::vector<Field> &_v,std::vector<RealD>& sort_vals, std::vector<int>& idx)
{
int vlen = idx.size();
assert(vlen>=1);
assert(vlen<=sort_vals.size());
assert(vlen<=_v.size());
for (size_t i=0;i<vlen;i++) {
if (idx[i] != i) {
//////////////////////////////////////
// idx[i] is a table of desired sources giving a permutation.
// Swap v[i] with v[idx[i]].
// Find j>i for which _vnew[j] = _vold[i],
// track the move idx[j] => idx[i]
// track the move idx[i] => i
//////////////////////////////////////
size_t j;
for (j=i;j<idx.size();j++)
if (idx[j]==i)
break;
assert(idx[i] > i); assert(j!=idx.size()); assert(idx[j]==i);
std::swap(_v[i]._odata,_v[idx[i]]._odata); // should use vector move constructor, no data copy
std::swap(sort_vals[i],sort_vals[idx[i]]);
idx[j] = idx[i];
idx[i] = i;
}
}
};
}
inline std::vector<int> basisSortGetIndex(std::vector<RealD>& sort_vals)
{
std::vector<int> idx(sort_vals.size());
std::iota(idx.begin(), idx.end(), 0);
// sort indexes based on comparing values in v
std::sort(idx.begin(), idx.end(), [&sort_vals](int i1, int i2) {
return ::fabs(sort_vals[i1]) < ::fabs(sort_vals[i2]);
});
return idx;
}
template<class Field>
void basisSortInPlace(std::vector<Field> & _v,std::vector<RealD>& sort_vals, bool reverse)
{
std::vector<int> idx = basisSortGetIndex(sort_vals);
if (reverse)
std::reverse(idx.begin(), idx.end());
basisReorderInPlace(_v,sort_vals,idx);
}
// PAB: faster to compute the inner products first then fuse loops.
// If performance critical can improve.
template<class Field>
void basisDeflate(const std::vector<Field> &_v,const std::vector<RealD>& eval,const Field& src_orig,Field& result) {
result = zero;
assert(_v.size()==eval.size());
int N = (int)_v.size();
for (int i=0;i<N;i++) {
Field& tmp = _v[i];
axpy(result,TensorRemove(innerProduct(tmp,src_orig)) / eval[i],tmp,result);
}
}
/////////////////////////////////////////////////////////////
// Implicitly restarted lanczos
/////////////////////////////////////////////////////////////
template<class Field> class ImplicitlyRestartedLanczosTester
{
public:
virtual int TestConvergence(int j,RealD resid,Field &evec, RealD &eval,RealD evalMaxApprox);
virtual int ReconstructEval(int j,RealD resid,Field &evec, RealD &eval,RealD evalMaxApprox);
};
enum IRLdiagonalisation {
IRLdiagonaliseWithDSTEGR,
IRLdiagonaliseWithQR,
IRLdiagonaliseWithEigen
};
template<class Field> class ImplicitlyRestartedLanczosHermOpTester : public ImplicitlyRestartedLanczosTester<Field>
{
public:
LinearFunction<Field> &_HermOpTest;
ImplicitlyRestartedLanczosHermOpTester(LinearFunction<Field> &HermOpTest) : _HermOpTest(HermOpTest) { };
int ReconstructEval(int j,RealD resid,Field &B, RealD &eval,RealD evalMaxApprox)
{
return TestConvergence(j,resid,B,eval,evalMaxApprox);
}
int TestConvergence(int j,RealD eresid,Field &B, RealD &eval,RealD evalMaxApprox)
{
Field v(B);
RealD eval_poly = eval;
// Apply operator
_HermOpTest(B,v);
RealD vnum = real(innerProduct(B,v)); // HermOp.
RealD vden = norm2(B);
RealD vv0 = norm2(v);
eval = vnum/vden;
v -= eval*B;
RealD vv = norm2(v) / ::pow(evalMaxApprox,2.0);
std::cout.precision(13);
std::cout<<GridLogIRL << "[" << std::setw(3)<<j<<"] "
<<"eval = "<<std::setw(25)<< eval << " (" << eval_poly << ")"
<<" |H B[i] - eval[i]B[i]|^2 / evalMaxApprox^2 " << std::setw(25) << vv
<<std::endl;
int conv=0;
if( (vv<eresid*eresid) ) conv = 1;
return conv;
}
};
template<class Field>
class ImplicitlyRestartedLanczos {
private:
int MaxIter; // Max iterations
int Nstop; // Number of evecs checked for convergence
int Nk; // Number of converged sought
int Nm; // Nm -- total number of vectors
RealD eresid;
private:
const RealD small = 1.0e-8;
int MaxIter;
int MinRestart; // Minimum number of restarts; only check for convergence after
int Nstop; // Number of evecs checked for convergence
int Nk; // Number of converged sought
// int Np; // Np -- Number of spare vecs in krylov space // == Nm - Nk
int Nm; // Nm -- total number of vectors
IRLdiagonalisation diagonalisation;
////////////////////////////////////
int orth_period;
RealD OrthoTime;
RealD eresid, betastp;
////////////////////////////////
// Embedded objects
////////////////////////////////////
SortEigen<Field> _sort;
LinearOperatorBase<Field> &_Linop;
OperatorFunction<Field> &_poly;
////////////////////////////////
LinearFunction<Field> &_HermOp;
LinearFunction<Field> &_HermOpTest;
ImplicitlyRestartedLanczosTester<Field> &_Tester;
// Default tester provided (we need a ref to something in default case)
ImplicitlyRestartedLanczosHermOpTester<Field> SimpleTester;
/////////////////////////
// Constructor
/////////////////////////
public:
ImplicitlyRestartedLanczos(LinearOperatorBase<Field> &Linop, // op
OperatorFunction<Field> & poly, // polynomial
int _Nstop, // really sought vecs
int _Nk, // sought vecs
int _Nm, // total vecs
RealD _eresid, // resid in lmd deficit
int _MaxIter, // Max iterations
IRLdiagonalisation _diagonalisation= IRLdiagonaliseWithEigen ) :
_Linop(Linop), _poly(poly),
Nstop(_Nstop), Nk(_Nk), Nm(_Nm),
eresid(_eresid), MaxIter(_MaxIter),
diagonalisation(_diagonalisation)
{ };
//////////////////////////////////////////////////////////////////
// PAB:
//////////////////////////////////////////////////////////////////
// Too many options & knobs. Do we really need orth_period
// What is the theoretical basis & guarantees of betastp ?
// Nstop=Nk viable?
// MinRestart avoidable with new convergence test?
// Could cut to HermOp, HermOpTest, Tester, Nk, Nm, resid, maxiter (+diagonalisation)
// HermOpTest could be eliminated if we dropped the Power method for max eval.
// -- also: The eval, eval2, eval2_copy stuff is still unnecessarily unclear
//////////////////////////////////////////////////////////////////
ImplicitlyRestartedLanczos(LinearFunction<Field> & HermOp,
LinearFunction<Field> & HermOpTest,
ImplicitlyRestartedLanczosTester<Field> & Tester,
int _Nstop, // sought vecs
int _Nk, // sought vecs
int _Nm, // spare vecs
RealD _eresid, // resid in lmdue deficit
int _MaxIter, // Max iterations
RealD _betastp=0.0, // if beta(k) < betastp: converged
int _MinRestart=1, int _orth_period = 1,
IRLdiagonalisation _diagonalisation= IRLdiagonaliseWithEigen) :
SimpleTester(HermOpTest), _HermOp(HermOp), _HermOpTest(HermOpTest), _Tester(Tester),
Nstop(_Nstop) , Nk(_Nk), Nm(_Nm),
eresid(_eresid), betastp(_betastp),
MaxIter(_MaxIter) , MinRestart(_MinRestart),
orth_period(_orth_period), diagonalisation(_diagonalisation) { };
ImplicitlyRestartedLanczos(LinearFunction<Field> & HermOp,
LinearFunction<Field> & HermOpTest,
int _Nstop, // sought vecs
int _Nk, // sought vecs
int _Nm, // spare vecs
RealD _eresid, // resid in lmdue deficit
int _MaxIter, // Max iterations
RealD _betastp=0.0, // if beta(k) < betastp: converged
int _MinRestart=1, int _orth_period = 1,
IRLdiagonalisation _diagonalisation= IRLdiagonaliseWithEigen) :
SimpleTester(HermOpTest), _HermOp(HermOp), _HermOpTest(HermOpTest), _Tester(SimpleTester),
Nstop(_Nstop) , Nk(_Nk), Nm(_Nm),
eresid(_eresid), betastp(_betastp),
MaxIter(_MaxIter) , MinRestart(_MinRestart),
orth_period(_orth_period), diagonalisation(_diagonalisation) { };
////////////////////////////////
// Helpers
////////////////////////////////
static RealD normalise(Field& v)
template<typename T> static RealD normalise(T& v)
{
RealD nn = norm2(v);
nn = sqrt(nn);
v = v * (1.0/nn);
return nn;
}
void orthogonalize(Field& w, std::vector<Field>& evec, int k)
void orthogonalize(Field& w, std::vector<Field>& evec,int k)
{
typedef typename Field::scalar_type MyComplex;
MyComplex ip;
for(int j=0; j<k; ++j){
ip = innerProduct(evec[j],w);
w = w - ip * evec[j];
}
OrthoTime-=usecond()/1e6;
basisOrthogonalize(evec,w,k);
normalise(w);
OrthoTime+=usecond()/1e6;
}
/* Rudy Arthur's thesis pp.137
@ -165,184 +323,234 @@ repeat
→AVK =VKHK +fKe†K † Extend to an M = K + P step factorization AVM = VMHM + fMeM
until convergence
*/
void calc(std::vector<RealD>& eval, std::vector<Field>& evec, const Field& src, int& Nconv)
void calc(std::vector<RealD>& eval, std::vector<Field>& evec, const Field& src, int& Nconv, bool reverse=true)
{
GridBase *grid = src._grid;
assert(grid == evec[0]._grid);
GridBase *grid = evec[0]._grid;
assert(grid == src._grid);
std::cout << GridLogMessage <<"**************************************************************************"<< std::endl;
std::cout << GridLogMessage <<" ImplicitlyRestartedLanczos::calc() starting iteration 0 / "<< MaxIter<< std::endl;
std::cout << GridLogMessage <<"**************************************************************************"<< std::endl;
std::cout << GridLogMessage <<" -- seek Nk = " << Nk <<" vectors"<< std::endl;
std::cout << GridLogMessage <<" -- accept Nstop = " << Nstop <<" vectors"<< std::endl;
std::cout << GridLogMessage <<" -- total Nm = " << Nm <<" vectors"<< std::endl;
std::cout << GridLogMessage <<" -- size of eval = " << eval.size() << std::endl;
std::cout << GridLogMessage <<" -- size of evec = " << evec.size() << std::endl;
GridLogIRL.TimingMode(1);
std::cout << GridLogIRL <<"**************************************************************************"<< std::endl;
std::cout << GridLogIRL <<" ImplicitlyRestartedLanczos::calc() starting iteration 0 / "<< MaxIter<< std::endl;
std::cout << GridLogIRL <<"**************************************************************************"<< std::endl;
std::cout << GridLogIRL <<" -- seek Nk = " << Nk <<" vectors"<< std::endl;
std::cout << GridLogIRL <<" -- accept Nstop = " << Nstop <<" vectors"<< std::endl;
std::cout << GridLogIRL <<" -- total Nm = " << Nm <<" vectors"<< std::endl;
std::cout << GridLogIRL <<" -- size of eval = " << eval.size() << std::endl;
std::cout << GridLogIRL <<" -- size of evec = " << evec.size() << std::endl;
if ( diagonalisation == IRLdiagonaliseWithDSTEGR ) {
std::cout << GridLogMessage << "Diagonalisation is DSTEGR "<<std::endl;
std::cout << GridLogIRL << "Diagonalisation is DSTEGR "<<std::endl;
} else if ( diagonalisation == IRLdiagonaliseWithQR ) {
std::cout << GridLogMessage << "Diagonalisation is QR "<<std::endl;
std::cout << GridLogIRL << "Diagonalisation is QR "<<std::endl;
} else if ( diagonalisation == IRLdiagonaliseWithEigen ) {
std::cout << GridLogMessage << "Diagonalisation is Eigen "<<std::endl;
std::cout << GridLogIRL << "Diagonalisation is Eigen "<<std::endl;
}
std::cout << GridLogMessage <<"**************************************************************************"<< std::endl;
std::cout << GridLogIRL <<"**************************************************************************"<< std::endl;
assert(Nm <= evec.size() && Nm <= eval.size());
assert(Nm == evec.size() && Nm == eval.size());
// quickly get an idea of the largest eigenvalue to more properly normalize the residuum
RealD evalMaxApprox = 0.0;
{
auto src_n = src;
auto tmp = src;
const int _MAX_ITER_IRL_MEVAPP_ = 50;
for (int i=0;i<_MAX_ITER_IRL_MEVAPP_;i++) {
_HermOpTest(src_n,tmp);
RealD vnum = real(innerProduct(src_n,tmp)); // HermOp.
RealD vden = norm2(src_n);
RealD na = vnum/vden;
if (fabs(evalMaxApprox/na - 1.0) < 0.05)
i=_MAX_ITER_IRL_MEVAPP_;
evalMaxApprox = na;
std::cout << GridLogIRL << " Approximation of largest eigenvalue: " << evalMaxApprox << std::endl;
src_n = tmp;
}
}
std::vector<RealD> lme(Nm);
std::vector<RealD> lme2(Nm);
std::vector<RealD> eval2(Nm);
std::vector<RealD> eval2_copy(Nm);
Eigen::MatrixXd Qt = Eigen::MatrixXd::Zero(Nm,Nm);
Eigen::MatrixXd Qt = Eigen::MatrixXd::Zero(Nm,Nm);
std::vector<int> Iconv(Nm);
std::vector<Field> B(Nm,grid); // waste of space replicating
Field f(grid);
Field v(grid);
int k1 = 1;
int k2 = Nk;
Nconv = 0;
RealD beta_k;
Nconv = 0;
// Set initial vector
evec[0] = src;
std::cout << GridLogMessage <<"norm2(src)= " << norm2(src)<<std::endl;
normalise(evec[0]);
std::cout << GridLogMessage <<"norm2(evec[0])= " << norm2(evec[0]) <<std::endl;
// Initial Nk steps
OrthoTime=0.;
for(int k=0; k<Nk; ++k) step(eval,lme,evec,f,Nm,k);
std::cout<<GridLogIRL <<"Initial "<< Nk <<"steps done "<<std::endl;
std::cout<<GridLogIRL <<"Initial steps:OrthoTime "<<OrthoTime<< "seconds"<<std::endl;
//////////////////////////////////
// Restarting loop begins
//////////////////////////////////
int iter;
for(iter = 0; iter<MaxIter; ++iter){
OrthoTime=0.;
std::cout<< GridLogMessage <<" **********************"<< std::endl;
std::cout<< GridLogMessage <<" Restart iteration = "<< iter << std::endl;
std::cout<< GridLogMessage <<" **********************"<< std::endl;
std::cout<<GridLogIRL <<" running "<<Nm-Nk <<" steps: "<<std::endl;
for(int k=Nk; k<Nm; ++k) step(eval,lme,evec,f,Nm,k);
f *= lme[Nm-1];
std::cout<<GridLogIRL <<" "<<Nm-Nk <<" steps done "<<std::endl;
std::cout<<GridLogIRL <<"Initial steps:OrthoTime "<<OrthoTime<< "seconds"<<std::endl;
//////////////////////////////////
// getting eigenvalues
//////////////////////////////////
for(int k=0; k<Nm; ++k){
eval2[k] = eval[k+k1-1];
lme2[k] = lme[k+k1-1];
}
Qt = Eigen::MatrixXd::Identity(Nm,Nm);
diagonalize(eval2,lme2,Nm,Nm,Qt,grid);
std::cout<<GridLogIRL <<" diagonalized "<<std::endl;
//////////////////////////////////
// sorting
_sort.push(eval2,Nm);
//////////////////////////////////
eval2_copy = eval2;
std::partial_sort(eval2.begin(),eval2.begin()+Nm,eval2.end(),std::greater<RealD>());
std::cout<<GridLogIRL <<" evals sorted "<<std::endl;
const int chunk=8;
for(int io=0; io<k2;io+=chunk){
std::cout<<GridLogIRL << "eval "<< std::setw(3) << io ;
for(int ii=0;ii<chunk;ii++){
if ( (io+ii)<k2 )
std::cout<< " "<< std::setw(12)<< eval2[io+ii];
}
std::cout << std::endl;
}
//////////////////////////////////
// Implicitly shifted QR transformations
//////////////////////////////////
Qt = Eigen::MatrixXd::Identity(Nm,Nm);
for(int ip=k2; ip<Nm; ++ip){
// Eigen replacement for qr_decomp ???
qr_decomp(eval,lme,Nm,Nm,Qt,eval2[ip],k1,Nm);
QR_decomp(eval,lme,Nm,Nm,Qt,eval2[ip],k1,Nm);
}
for(int i=0; i<(Nk+1); ++i) B[i] = 0.0;
for(int j=k1-1; j<k2+1; ++j){
for(int k=0; k<Nm; ++k){
B[j].checkerboard = evec[k].checkerboard;
B[j] += Qt(j,k) * evec[k];
}
}
for(int j=k1-1; j<k2+1; ++j) evec[j] = B[j];
std::cout<<GridLogIRL <<"QR decomposed "<<std::endl;
assert(k2<Nm); assert(k2<Nm); assert(k1>0);
basisRotate(evec,Qt,k1-1,k2+1,0,Nm,Nm); /// big constraint on the basis
std::cout<<GridLogIRL <<"basisRotated by Qt"<<std::endl;
////////////////////////////////////////////////////
// Compressed vector f and beta(k2)
////////////////////////////////////////////////////
f *= Qt(k2-1,Nm-1);
f += lme[k2-1] * evec[k2];
beta_k = norm2(f);
beta_k = sqrt(beta_k);
std::cout<< GridLogMessage<<" beta(k) = "<<beta_k<<std::endl;
std::cout<<GridLogIRL<<" beta(k) = "<<beta_k<<std::endl;
RealD betar = 1.0/beta_k;
evec[k2] = betar * f;
lme[k2-1] = beta_k;
////////////////////////////////////////////////////
// Convergence test
////////////////////////////////////////////////////
for(int k=0; k<Nm; ++k){
eval2[k] = eval[k];
lme2[k] = lme[k];
}
Qt = Eigen::MatrixXd::Identity(Nm,Nm);
diagonalize(eval2,lme2,Nk,Nm,Qt,grid);
for(int k = 0; k<Nk; ++k) B[k]=0.0;
for(int j = 0; j<Nk; ++j){
for(int k = 0; k<Nk; ++k){
B[j].checkerboard = evec[k].checkerboard;
B[j] += Qt(j,k) * evec[k];
}
}
std::cout<<GridLogIRL <<" Diagonalized "<<std::endl;
Nconv = 0;
for(int i=0; i<Nk; ++i){
_Linop.HermOp(B[i],v);
RealD vnum = real(innerProduct(B[i],v)); // HermOp.
RealD vden = norm2(B[i]);
eval2[i] = vnum/vden;
v -= eval2[i]*B[i];
RealD vv = norm2(v);
std::cout.precision(13);
std::cout << GridLogMessage << "[" << std::setw(3)<< std::setiosflags(std::ios_base::right) <<i<<"] ";
std::cout << "eval = "<<std::setw(25)<< std::setiosflags(std::ios_base::left)<< eval2[i];
std::cout << " |H B[i] - eval[i]B[i]|^2 "<< std::setw(25)<< std::setiosflags(std::ios_base::right)<< vv<< std::endl;
// change the criteria as evals are supposed to be sorted, all evals smaller(larger) than Nstop should have converged
if((vv<eresid*eresid) && (i == Nconv) ){
Iconv[Nconv] = i;
++Nconv;
}
} // i-loop end
std::cout<< GridLogMessage <<" #modes converged: "<<Nconv<<std::endl;
if (iter >= MinRestart) {
if( Nconv>=Nstop ){
goto converged;
}
} // end of iter loop
std::cout << GridLogMessage <<"**************************************************************************"<< std::endl;
std::cout<< GridLogError <<" ImplicitlyRestartedLanczos::calc() NOT converged.";
std::cout << GridLogMessage <<"**************************************************************************"<< std::endl;
std::cout << GridLogIRL << "Test convergence: rotate subset of vectors to test convergence " << std::endl;
Field B(grid); B.checkerboard = evec[0].checkerboard;
// power of two search pattern; not every evalue in eval2 is assessed.
for(int jj = 1; jj<=Nstop; jj*=2){
int j = Nstop-jj;
RealD e = eval2_copy[j]; // Discard the evalue
basisRotateJ(B,evec,Qt,j,0,Nk,Nm);
if( _Tester.TestConvergence(j,eresid,B,e,evalMaxApprox) ) {
if ( j > Nconv ) {
Nconv=j+1;
jj=Nstop; // Terminate the scan
}
}
}
// Do evec[0] for good measure
{
int j=0;
RealD e = eval2_copy[0];
basisRotateJ(B,evec,Qt,j,0,Nk,Nm);
_Tester.TestConvergence(j,eresid,B,e,evalMaxApprox);
}
// test if we converged, if so, terminate
std::cout<<GridLogIRL<<" #modes converged: >= "<<Nconv<<"/"<<Nstop<<std::endl;
// if( Nconv>=Nstop || beta_k < betastp){
if( Nconv>=Nstop){
goto converged;
}
} else {
std::cout << GridLogIRL << "iter < MinRestart: do not yet test for convergence\n";
} // end of iter loop
}
std::cout<<GridLogError<<"\n NOT converged.\n";
abort();
converged:
// Sorting
eval.resize(Nconv);
evec.resize(Nconv,grid);
for(int i=0; i<Nconv; ++i){
eval[i] = eval2[Iconv[i]];
evec[i] = B[Iconv[i]];
{
Field B(grid); B.checkerboard = evec[0].checkerboard;
basisRotate(evec,Qt,0,Nk,0,Nk,Nm);
std::cout << GridLogIRL << " Rotated basis"<<std::endl;
Nconv=0;
//////////////////////////////////////////////////////////////////////
// Full final convergence test; unconditionally applied
//////////////////////////////////////////////////////////////////////
for(int j = 0; j<=Nk; j++){
B=evec[j];
if( _Tester.ReconstructEval(j,eresid,B,eval2[j],evalMaxApprox) ) {
Nconv++;
}
}
if ( Nconv < Nstop )
std::cout << GridLogIRL << "Nconv ("<<Nconv<<") < Nstop ("<<Nstop<<")"<<std::endl;
eval=eval2;
basisSortInPlace(evec,eval,reverse);
}
_sort.push(eval,evec,Nconv);
std::cout << GridLogMessage <<"**************************************************************************"<< std::endl;
std::cout << GridLogMessage << "ImplicitlyRestartedLanczos CONVERGED ; Summary :\n";
std::cout << GridLogMessage <<"**************************************************************************"<< std::endl;
std::cout << GridLogMessage << " -- Iterations = "<< iter << "\n";
std::cout << GridLogMessage << " -- beta(k) = "<< beta_k << "\n";
std::cout << GridLogMessage << " -- Nconv = "<< Nconv << "\n";
std::cout << GridLogMessage <<"**************************************************************************"<< std::endl;
std::cout << GridLogIRL <<"**************************************************************************"<< std::endl;
std::cout << GridLogIRL << "ImplicitlyRestartedLanczos CONVERGED ; Summary :\n";
std::cout << GridLogIRL <<"**************************************************************************"<< std::endl;
std::cout << GridLogIRL << " -- Iterations = "<< iter << "\n";
std::cout << GridLogIRL << " -- beta(k) = "<< beta_k << "\n";
std::cout << GridLogIRL << " -- Nconv = "<< Nconv << "\n";
std::cout << GridLogIRL <<"**************************************************************************"<< std::endl;
}
private:
private:
/* Saad PP. 195
1. Choose an initial vector v1 of 2-norm unity. Set β1 ≡ 0, v0 ≡ 0
2. For k = 1,2,...,m Do:
@ -360,28 +568,38 @@ private:
{
const RealD tiny = 1.0e-20;
assert( k< Nm );
_poly(_Linop,evec[k],w); // 3. wk:=Avkβkv_{k1}
GridStopWatch gsw_op,gsw_o;
Field& evec_k = evec[k];
_HermOp(evec_k,w); std::cout<<GridLogIRL << "Poly(HermOp)" <<std::endl;
if(k>0) w -= lme[k-1] * evec[k-1];
ComplexD zalph = innerProduct(evec[k],w); // 4. αk:=(wk,vk)
ComplexD zalph = innerProduct(evec_k,w); // 4. αk:=(wk,vk)
RealD alph = real(zalph);
w = w - alph * evec[k];// 5. wk:=wkαkvk
w = w - alph * evec_k;// 5. wk:=wkαkvk
RealD beta = normalise(w); // 6. βk+1 := ∥wk∥2. If βk+1 = 0 then Stop
// 7. vk+1 := wk/βk+1
lmd[k] = alph;
lme[k] = beta;
if ( k > 0 ) orthogonalize(w,evec,k); // orthonormalise
if ( k < Nm-1) evec[k+1] = w;
if ( beta < tiny ) std::cout << GridLogMessage << " beta is tiny "<<beta<<std::endl;
if (k>0 && k % orth_period == 0) {
orthogonalize(w,evec,k); // orthonormalise
std::cout<<GridLogIRL << "Orthogonalised " <<std::endl;
}
if(k < Nm-1) evec[k+1] = w;
std::cout<<GridLogIRL << "alpha[" << k << "] = " << zalph << " beta[" << k << "] = "<<beta<<std::endl;
if ( beta < tiny )
std::cout<<GridLogIRL << " beta is tiny "<<beta<<std::endl;
}
void diagonalize_Eigen(std::vector<RealD>& lmd, std::vector<RealD>& lme,
int Nk, int Nm,
Eigen::MatrixXd & Qt, // Nm x Nm
@ -404,11 +622,11 @@ private:
}
}
}
///////////////////////////////////////////////////////////////////////////
// File could end here if settle on Eigen ???
///////////////////////////////////////////////////////////////////////////
void qr_decomp(std::vector<RealD>& lmd, // Nm
///////////////////////////////////////////////////////////////////////////
// File could end here if settle on Eigen ??? !!!
///////////////////////////////////////////////////////////////////////////
void QR_decomp(std::vector<RealD>& lmd, // Nm
std::vector<RealD>& lme, // Nm
int Nk, int Nm, // Nk, Nm
Eigen::MatrixXd& Qt, // Nm x Nm matrix
@ -575,51 +793,50 @@ void diagonalize_lapack(std::vector<RealD>& lmd,
#endif
}
void diagonalize_QR(std::vector<RealD>& lmd, std::vector<RealD>& lme,
int Nk, int Nm,
Eigen::MatrixXd & Qt,
GridBase *grid)
{
int Niter = 100*Nm;
int kmin = 1;
int kmax = Nk;
// (this should be more sophisticated)
for(int iter=0; iter<Niter; ++iter){
// determination of 2x2 leading submatrix
RealD dsub = lmd[kmax-1]-lmd[kmax-2];
RealD dd = sqrt(dsub*dsub + 4.0*lme[kmax-2]*lme[kmax-2]);
RealD Dsh = 0.5*(lmd[kmax-2]+lmd[kmax-1] +dd*(dsub/fabs(dsub)));
// (Dsh: shift)
// transformation
qr_decomp(lmd,lme,Nk,Nm,Qt,Dsh,kmin,kmax); // Nk, Nm
// Convergence criterion (redef of kmin and kamx)
for(int j=kmax-1; j>= kmin; --j){
RealD dds = fabs(lmd[j-1])+fabs(lmd[j]);
if(fabs(lme[j-1])+dds > dds){
kmax = j+1;
goto continued;
}
}
Niter = iter;
return;
continued:
for(int j=0; j<kmax-1; ++j){
RealD dds = fabs(lmd[j])+fabs(lmd[j+1]);
if(fabs(lme[j])+dds > dds){
kmin = j+1;
break;
}
void diagonalize_QR(std::vector<RealD>& lmd, std::vector<RealD>& lme,
int Nk, int Nm,
Eigen::MatrixXd & Qt,
GridBase *grid)
{
int QRiter = 100*Nm;
int kmin = 1;
int kmax = Nk;
// (this should be more sophisticated)
for(int iter=0; iter<QRiter; ++iter){
// determination of 2x2 leading submatrix
RealD dsub = lmd[kmax-1]-lmd[kmax-2];
RealD dd = sqrt(dsub*dsub + 4.0*lme[kmax-2]*lme[kmax-2]);
RealD Dsh = 0.5*(lmd[kmax-2]+lmd[kmax-1] +dd*(dsub/fabs(dsub)));
// (Dsh: shift)
// transformation
QR_decomp(lmd,lme,Nk,Nm,Qt,Dsh,kmin,kmax); // Nk, Nm
// Convergence criterion (redef of kmin and kamx)
for(int j=kmax-1; j>= kmin; --j){
RealD dds = fabs(lmd[j-1])+fabs(lmd[j]);
if(fabs(lme[j-1])+dds > dds){
kmax = j+1;
goto continued;
}
}
QRiter = iter;
return;
continued:
for(int j=0; j<kmax-1; ++j){
RealD dds = fabs(lmd[j])+fabs(lmd[j+1]);
if(fabs(lme[j])+dds > dds){
kmin = j+1;
break;
}
}
std::cout << GridLogError << "[QL method] Error - Too many iteration: "<<Niter<<"\n";
abort();
}
};
std::cout << GridLogError << "[QL method] Error - Too many iteration: "<<QRiter<<"\n";
abort();
}
};
}
#endif

View File

@ -0,0 +1,352 @@
/*************************************************************************************
Grid physics library, www.github.com/paboyle/Grid
Source file: ./lib/algorithms/iterative/LocalCoherenceLanczos.h
Copyright (C) 2015
Author: Christoph Lehner <clehner@bnl.gov>
Author: paboyle <paboyle@ph.ed.ac.uk>
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
See the full license in the file "LICENSE" in the top level distribution directory
*************************************************************************************/
/* END LEGAL */
#ifndef GRID_LOCAL_COHERENCE_IRL_H
#define GRID_LOCAL_COHERENCE_IRL_H
namespace Grid {
struct LanczosParams : Serializable {
public:
GRID_SERIALIZABLE_CLASS_MEMBERS(LanczosParams,
ChebyParams, Cheby,/*Chebyshev*/
int, Nstop, /*Vecs in Lanczos must converge Nstop < Nk < Nm*/
int, Nk, /*Vecs in Lanczos seek converge*/
int, Nm, /*Total vecs in Lanczos include restart*/
RealD, resid, /*residual*/
int, MaxIt,
RealD, betastp, /* ? */
int, MinRes); // Must restart
};
struct LocalCoherenceLanczosParams : Serializable {
public:
GRID_SERIALIZABLE_CLASS_MEMBERS(LocalCoherenceLanczosParams,
bool, doFine,
bool, doFineRead,
bool, doCoarse,
bool, doCoarseRead,
LanczosParams, FineParams,
LanczosParams, CoarseParams,
ChebyParams, Smoother,
RealD , coarse_relax_tol,
std::vector<int>, blockSize,
std::string, config,
std::vector < std::complex<double> >, omega,
RealD, mass,
RealD, M5);
};
// Duplicate functionality; ProjectedFunctionHermOp could be used with the trivial function
template<class Fobj,class CComplex,int nbasis>
class ProjectedHermOp : public LinearFunction<Lattice<iVector<CComplex,nbasis > > > {
public:
typedef iVector<CComplex,nbasis > CoarseSiteVector;
typedef Lattice<CoarseSiteVector> CoarseField;
typedef Lattice<CComplex> CoarseScalar; // used for inner products on fine field
typedef Lattice<Fobj> FineField;
LinearOperatorBase<FineField> &_Linop;
Aggregation<Fobj,CComplex,nbasis> &_Aggregate;
ProjectedHermOp(LinearOperatorBase<FineField>& linop, Aggregation<Fobj,CComplex,nbasis> &aggregate) :
_Linop(linop),
_Aggregate(aggregate) { };
void operator()(const CoarseField& in, CoarseField& out) {
GridBase *FineGrid = _Aggregate.FineGrid;
FineField fin(FineGrid);
FineField fout(FineGrid);
_Aggregate.PromoteFromSubspace(in,fin); std::cout<<GridLogIRL<<"ProjectedHermop : Promote to fine"<<std::endl;
_Linop.HermOp(fin,fout); std::cout<<GridLogIRL<<"ProjectedHermop : HermOp (fine) "<<std::endl;
_Aggregate.ProjectToSubspace(out,fout); std::cout<<GridLogIRL<<"ProjectedHermop : Project to coarse "<<std::endl;
}
};
template<class Fobj,class CComplex,int nbasis>
class ProjectedFunctionHermOp : public LinearFunction<Lattice<iVector<CComplex,nbasis > > > {
public:
typedef iVector<CComplex,nbasis > CoarseSiteVector;
typedef Lattice<CoarseSiteVector> CoarseField;
typedef Lattice<CComplex> CoarseScalar; // used for inner products on fine field
typedef Lattice<Fobj> FineField;
OperatorFunction<FineField> & _poly;
LinearOperatorBase<FineField> &_Linop;
Aggregation<Fobj,CComplex,nbasis> &_Aggregate;
ProjectedFunctionHermOp(OperatorFunction<FineField> & poly,LinearOperatorBase<FineField>& linop,
Aggregation<Fobj,CComplex,nbasis> &aggregate) :
_poly(poly),
_Linop(linop),
_Aggregate(aggregate) { };
void operator()(const CoarseField& in, CoarseField& out) {
GridBase *FineGrid = _Aggregate.FineGrid;
FineField fin(FineGrid) ;fin.checkerboard =_Aggregate.checkerboard;
FineField fout(FineGrid);fout.checkerboard =_Aggregate.checkerboard;
_Aggregate.PromoteFromSubspace(in,fin); std::cout<<GridLogIRL<<"ProjectedFunctionHermop : Promote to fine"<<std::endl;
_poly(_Linop,fin,fout); std::cout<<GridLogIRL<<"ProjectedFunctionHermop : Poly "<<std::endl;
_Aggregate.ProjectToSubspace(out,fout); std::cout<<GridLogIRL<<"ProjectedFunctionHermop : Project to coarse "<<std::endl;
}
};
template<class Fobj,class CComplex,int nbasis>
class ImplicitlyRestartedLanczosSmoothedTester : public ImplicitlyRestartedLanczosTester<Lattice<iVector<CComplex,nbasis > > >
{
public:
typedef iVector<CComplex,nbasis > CoarseSiteVector;
typedef Lattice<CoarseSiteVector> CoarseField;
typedef Lattice<CComplex> CoarseScalar; // used for inner products on fine field
typedef Lattice<Fobj> FineField;
LinearFunction<CoarseField> & _Poly;
OperatorFunction<FineField> & _smoother;
LinearOperatorBase<FineField> &_Linop;
Aggregation<Fobj,CComplex,nbasis> &_Aggregate;
RealD _coarse_relax_tol;
ImplicitlyRestartedLanczosSmoothedTester(LinearFunction<CoarseField> &Poly,
OperatorFunction<FineField> &smoother,
LinearOperatorBase<FineField> &Linop,
Aggregation<Fobj,CComplex,nbasis> &Aggregate,
RealD coarse_relax_tol=5.0e3)
: _smoother(smoother), _Linop(Linop),_Aggregate(Aggregate), _Poly(Poly), _coarse_relax_tol(coarse_relax_tol) { };
int TestConvergence(int j,RealD eresid,CoarseField &B, RealD &eval,RealD evalMaxApprox)
{
CoarseField v(B);
RealD eval_poly = eval;
// Apply operator
_Poly(B,v);
RealD vnum = real(innerProduct(B,v)); // HermOp.
RealD vden = norm2(B);
RealD vv0 = norm2(v);
eval = vnum/vden;
v -= eval*B;
RealD vv = norm2(v) / ::pow(evalMaxApprox,2.0);
std::cout.precision(13);
std::cout<<GridLogIRL << "[" << std::setw(3)<<j<<"] "
<<"eval = "<<std::setw(25)<< eval << " (" << eval_poly << ")"
<<" |H B[i] - eval[i]B[i]|^2 / evalMaxApprox^2 " << std::setw(25) << vv
<<std::endl;
int conv=0;
if( (vv<eresid*eresid) ) conv = 1;
return conv;
}
int ReconstructEval(int j,RealD eresid,CoarseField &B, RealD &eval,RealD evalMaxApprox)
{
GridBase *FineGrid = _Aggregate.FineGrid;
int checkerboard = _Aggregate.checkerboard;
FineField fB(FineGrid);fB.checkerboard =checkerboard;
FineField fv(FineGrid);fv.checkerboard =checkerboard;
_Aggregate.PromoteFromSubspace(B,fv);
_smoother(_Linop,fv,fB);
RealD eval_poly = eval;
_Linop.HermOp(fB,fv);
RealD vnum = real(innerProduct(fB,fv)); // HermOp.
RealD vden = norm2(fB);
RealD vv0 = norm2(fv);
eval = vnum/vden;
fv -= eval*fB;
RealD vv = norm2(fv) / ::pow(evalMaxApprox,2.0);
std::cout.precision(13);
std::cout<<GridLogIRL << "[" << std::setw(3)<<j<<"] "
<<"eval = "<<std::setw(25)<< eval << " (" << eval_poly << ")"
<<" |H B[i] - eval[i]B[i]|^2 / evalMaxApprox^2 " << std::setw(25) << vv
<<std::endl;
if ( j > nbasis ) eresid = eresid*_coarse_relax_tol;
if( (vv<eresid*eresid) ) return 1;
return 0;
}
};
////////////////////////////////////////////
// Make serializable Lanczos params
////////////////////////////////////////////
template<class Fobj,class CComplex,int nbasis>
class LocalCoherenceLanczos
{
public:
typedef iVector<CComplex,nbasis > CoarseSiteVector;
typedef Lattice<CComplex> CoarseScalar; // used for inner products on fine field
typedef Lattice<CoarseSiteVector> CoarseField;
typedef Lattice<Fobj> FineField;
protected:
GridBase *_CoarseGrid;
GridBase *_FineGrid;
int _checkerboard;
LinearOperatorBase<FineField> & _FineOp;
// FIXME replace Aggregation with vector of fine; the code reuse is too small for
// the hassle and complexity of cross coupling.
Aggregation<Fobj,CComplex,nbasis> _Aggregate;
std::vector<RealD> evals_fine;
std::vector<RealD> evals_coarse;
std::vector<CoarseField> evec_coarse;
public:
LocalCoherenceLanczos(GridBase *FineGrid,
GridBase *CoarseGrid,
LinearOperatorBase<FineField> &FineOp,
int checkerboard) :
_CoarseGrid(CoarseGrid),
_FineGrid(FineGrid),
_Aggregate(CoarseGrid,FineGrid,checkerboard),
_FineOp(FineOp),
_checkerboard(checkerboard)
{
evals_fine.resize(0);
evals_coarse.resize(0);
};
void Orthogonalise(void ) { _Aggregate.Orthogonalise(); }
template<typename T> static RealD normalise(T& v)
{
RealD nn = norm2(v);
nn = ::sqrt(nn);
v = v * (1.0/nn);
return nn;
}
void fakeFine(void)
{
int Nk = nbasis;
_Aggregate.subspace.resize(Nk,_FineGrid);
_Aggregate.subspace[0]=1.0;
_Aggregate.subspace[0].checkerboard=_checkerboard;
normalise(_Aggregate.subspace[0]);
PlainHermOp<FineField> Op(_FineOp);
for(int k=1;k<Nk;k++){
_Aggregate.subspace[k].checkerboard=_checkerboard;
Op(_Aggregate.subspace[k-1],_Aggregate.subspace[k]);
normalise(_Aggregate.subspace[k]);
}
}
void testFine(RealD resid)
{
assert(evals_fine.size() == nbasis);
assert(_Aggregate.subspace.size() == nbasis);
PlainHermOp<FineField> Op(_FineOp);
ImplicitlyRestartedLanczosHermOpTester<FineField> SimpleTester(Op);
for(int k=0;k<nbasis;k++){
assert(SimpleTester.ReconstructEval(k,resid,_Aggregate.subspace[k],evals_fine[k],1.0)==1);
}
}
void testCoarse(RealD resid,ChebyParams cheby_smooth,RealD relax)
{
assert(evals_fine.size() == nbasis);
assert(_Aggregate.subspace.size() == nbasis);
//////////////////////////////////////////////////////////////////////////////////////////////////
// create a smoother and see if we can get a cheap convergence test and smooth inside the IRL
//////////////////////////////////////////////////////////////////////////////////////////////////
Chebyshev<FineField> ChebySmooth(cheby_smooth);
ProjectedFunctionHermOp<Fobj,CComplex,nbasis> ChebyOp (ChebySmooth,_FineOp,_Aggregate);
ImplicitlyRestartedLanczosSmoothedTester<Fobj,CComplex,nbasis> ChebySmoothTester(ChebyOp,ChebySmooth,_FineOp,_Aggregate,relax);
for(int k=0;k<evec_coarse.size();k++){
if ( k < nbasis ) {
assert(ChebySmoothTester.ReconstructEval(k,resid,evec_coarse[k],evals_coarse[k],1.0)==1);
} else {
assert(ChebySmoothTester.ReconstructEval(k,resid*relax,evec_coarse[k],evals_coarse[k],1.0)==1);
}
}
}
void calcFine(ChebyParams cheby_parms,int Nstop,int Nk,int Nm,RealD resid,
RealD MaxIt, RealD betastp, int MinRes)
{
assert(nbasis<=Nm);
Chebyshev<FineField> Cheby(cheby_parms);
FunctionHermOp<FineField> ChebyOp(Cheby,_FineOp);
PlainHermOp<FineField> Op(_FineOp);
evals_fine.resize(Nm);
_Aggregate.subspace.resize(Nm,_FineGrid);
ImplicitlyRestartedLanczos<FineField> IRL(ChebyOp,Op,Nstop,Nk,Nm,resid,MaxIt,betastp,MinRes);
FineField src(_FineGrid); src=1.0; src.checkerboard = _checkerboard;
int Nconv;
IRL.calc(evals_fine,_Aggregate.subspace,src,Nconv,false);
// Shrink down to number saved
assert(Nstop>=nbasis);
assert(Nconv>=nbasis);
evals_fine.resize(nbasis);
_Aggregate.subspace.resize(nbasis,_FineGrid);
}
void calcCoarse(ChebyParams cheby_op,ChebyParams cheby_smooth,RealD relax,
int Nstop, int Nk, int Nm,RealD resid,
RealD MaxIt, RealD betastp, int MinRes)
{
Chebyshev<FineField> Cheby(cheby_op);
ProjectedHermOp<Fobj,CComplex,nbasis> Op(_FineOp,_Aggregate);
ProjectedFunctionHermOp<Fobj,CComplex,nbasis> ChebyOp (Cheby,_FineOp,_Aggregate);
//////////////////////////////////////////////////////////////////////////////////////////////////
// create a smoother and see if we can get a cheap convergence test and smooth inside the IRL
//////////////////////////////////////////////////////////////////////////////////////////////////
Chebyshev<FineField> ChebySmooth(cheby_smooth);
ImplicitlyRestartedLanczosSmoothedTester<Fobj,CComplex,nbasis> ChebySmoothTester(ChebyOp,ChebySmooth,_FineOp,_Aggregate,relax);
evals_coarse.resize(Nm);
evec_coarse.resize(Nm,_CoarseGrid);
CoarseField src(_CoarseGrid); src=1.0;
ImplicitlyRestartedLanczos<CoarseField> IRL(ChebyOp,ChebyOp,ChebySmoothTester,Nstop,Nk,Nm,resid,MaxIt,betastp,MinRes);
int Nconv=0;
IRL.calc(evals_coarse,evec_coarse,src,Nconv,false);
assert(Nconv>=Nstop);
evals_coarse.resize(Nstop);
evec_coarse.resize (Nstop,_CoarseGrid);
for (int i=0;i<Nstop;i++){
std::cout << i << " Coarse eval = " << evals_coarse[i] << std::endl;
}
}
};
}
#endif

View File

@ -53,13 +53,36 @@ Author: Peter Boyle <paboyle@ph.ed.ac.uk>
* M psi = eta
***********************
*Odd
* i) (D_oo)^{\dag} D_oo psi_o = (D_oo)^dag L^{-1} eta_o
* i) D_oo psi_o = L^{-1} eta_o
* eta_o' = (D_oo)^dag (eta_o - Moe Mee^{-1} eta_e)
*
* Wilson:
* (D_oo)^{\dag} D_oo psi_o = (D_oo)^dag L^{-1} eta_o
* Stag:
* D_oo psi_o = L^{-1} eta = (eta_o - Moe Mee^{-1} eta_e)
*
* L^-1 eta_o= (1 0 ) (e
* (-MoeMee^{-1} 1 )
*
*Even
* ii) Mee psi_e + Meo psi_o = src_e
*
* => sol_e = M_ee^-1 * ( src_e - Meo sol_o )...
*
*
* TODO: Other options:
*
* a) change checkerboards for Schur e<->o
*
* Left precon by Moo^-1
* b) Doo^{dag} M_oo^-dag Moo^-1 Doo psi_0 = (D_oo)^dag M_oo^-dag Moo^-1 L^{-1} eta_o
* eta_o' = (D_oo)^dag M_oo^-dag Moo^-1 (eta_o - Moe Mee^{-1} eta_e)
*
* Right precon by Moo^-1
* c) M_oo^-dag Doo^{dag} Doo Moo^-1 phi_0 = M_oo^-dag (D_oo)^dag L^{-1} eta_o
* eta_o' = M_oo^-dag (D_oo)^dag (eta_o - Moe Mee^{-1} eta_e)
* psi_o = M_oo^-1 phi_o
* TODO: Deflation
*/
namespace Grid {
@ -107,18 +130,19 @@ namespace Grid {
pickCheckerboard(Odd ,sol_o,out);
/////////////////////////////////////////////////////
// src_o = Mdag * (source_o - Moe MeeInv source_e)
// src_o = (source_o - Moe MeeInv source_e)
/////////////////////////////////////////////////////
_Matrix.MooeeInv(src_e,tmp); assert( tmp.checkerboard ==Even);
_Matrix.Meooe (tmp,Mtmp); assert( Mtmp.checkerboard ==Odd);
tmp=src_o-Mtmp; assert( tmp.checkerboard ==Odd);
_Matrix.Mooee(tmp,src_o); assert(src_o.checkerboard ==Odd);
src_o = tmp; assert(src_o.checkerboard ==Odd);
// _Matrix.Mooee(tmp,src_o); // Extra factor of "m" in source
//////////////////////////////////////////////////////////////
// Call the red-black solver
//////////////////////////////////////////////////////////////
std::cout<<GridLogMessage << "SchurRedBlack solver calling the MpcDagMp solver" <<std::endl;
std::cout<<GridLogMessage << "SchurRedBlackStaggeredSolver calling the Mpc solver" <<std::endl;
_HermitianRBSolver(_HermOpEO,src_o,sol_o); assert(sol_o.checkerboard==Odd);
///////////////////////////////////////////////////
@ -155,12 +179,10 @@ namespace Grid {
/////////////////////////////////////////////////////
// Wrap the usual normal equations Schur trick
/////////////////////////////////////////////////////
SchurRedBlackDiagMooeeSolve(OperatorFunction<Field> &HermitianRBSolver) :
_HermitianRBSolver(HermitianRBSolver)
{
CBfactorise=0;
};
SchurRedBlackDiagMooeeSolve(OperatorFunction<Field> &HermitianRBSolver,int cb=0) : _HermitianRBSolver(HermitianRBSolver)
{
CBfactorise=cb;
};
template<class Matrix>
void operator() (Matrix & _Matrix,const Field &in, Field &out){

View File

@ -44,13 +44,20 @@ namespace Grid{
class GridBase : public CartesianCommunicator , public GridThread {
public:
int dummy;
// Give Lattice access
template<class object> friend class Lattice;
GridBase(const std::vector<int> & processor_grid) : CartesianCommunicator(processor_grid) {};
GridBase(const std::vector<int> & processor_grid,
const CartesianCommunicator &parent) : CartesianCommunicator(processor_grid,parent) {};
const CartesianCommunicator &parent,
int &split_rank)
: CartesianCommunicator(processor_grid,parent,split_rank) {};
GridBase(const std::vector<int> & processor_grid,
const CartesianCommunicator &parent)
: CartesianCommunicator(processor_grid,parent,dummy) {};
virtual ~GridBase() = default;
// Physics Grid information.
std::vector<int> _simd_layout;// Which dimensions get relayed out over simd lanes.

View File

@ -38,7 +38,7 @@ namespace Grid{
class GridCartesian: public GridBase {
public:
int dummy;
virtual int CheckerBoardFromOindexTable (int Oindex) {
return 0;
}
@ -67,7 +67,14 @@ public:
GridCartesian(const std::vector<int> &dimensions,
const std::vector<int> &simd_layout,
const std::vector<int> &processor_grid,
const GridCartesian &parent) : GridBase(processor_grid,parent)
const GridCartesian &parent) : GridBase(processor_grid,parent,dummy)
{
Init(dimensions,simd_layout,processor_grid);
}
GridCartesian(const std::vector<int> &dimensions,
const std::vector<int> &simd_layout,
const std::vector<int> &processor_grid,
const GridCartesian &parent,int &split_rank) : GridBase(processor_grid,parent,split_rank)
{
Init(dimensions,simd_layout,processor_grid);
}
@ -81,6 +88,8 @@ public:
Init(dimensions,simd_layout,processor_grid);
}
virtual ~GridCartesian() = default;
void Init(const std::vector<int> &dimensions,
const std::vector<int> &simd_layout,
const std::vector<int> &processor_grid)

View File

@ -133,6 +133,8 @@ public:
{
Init(base->_fdimensions,base->_simd_layout,base->_processors,checker_dim_mask,checker_dim) ;
}
virtual ~GridRedBlackCartesian() = default;
#if 0
////////////////////////////////////////////////////////////
// Create redblack grid ;; deprecate these. Should not
@ -205,6 +207,7 @@ public:
{
assert((_gdimensions[d] & 0x1) == 0);
_gdimensions[d] = _gdimensions[d] / 2; // Remove a checkerboard
_gsites /= 2;
}
_ldimensions[d] = _gdimensions[d] / _processors[d];
assert(_ldimensions[d] * _processors[d] == _gdimensions[d]);

View File

@ -97,9 +97,9 @@ void CartesianCommunicator::GlobalSumVector(ComplexD *c,int N)
}
#if defined( GRID_COMMS_MPI) || defined (GRID_COMMS_MPIT)
#if defined( GRID_COMMS_MPI) || defined (GRID_COMMS_MPIT) || defined (GRID_COMMS_MPI3)
CartesianCommunicator::CartesianCommunicator(const std::vector<int> &processors,const CartesianCommunicator &parent)
CartesianCommunicator::CartesianCommunicator(const std::vector<int> &processors,const CartesianCommunicator &parent,int &srank)
{
_ndimension = processors.size();
assert(_ndimension = parent._ndimension);
@ -117,13 +117,24 @@ CartesianCommunicator::CartesianCommunicator(const std::vector<int> &processors,
int Nchild = Nparent/childsize;
assert (childsize * Nchild == Nparent);
int prank; MPI_Comm_rank(parent.communicator,&prank);
int crank = prank % childsize;
int ccomm = prank / childsize;
std::vector<int> ccoor(_ndimension); // coor within subcommunicator
std::vector<int> scoor(_ndimension); // coor of split within parent
std::vector<int> ssize(_ndimension); // coor of split within parent
for(int d=0;d<_ndimension;d++){
ccoor[d] = parent._processor_coor[d] % processors[d];
scoor[d] = parent._processor_coor[d] / processors[d];
ssize[d] = parent._processors[d] / processors[d];
}
int crank; // rank within subcomm ; srank is rank of subcomm within blocks of subcomms
// Mpi uses the reverse Lexico convention to us
Lexicographic::IndexFromCoorReversed(ccoor,crank,processors);
Lexicographic::IndexFromCoorReversed(scoor,srank,ssize);
MPI_Comm comm_split;
if ( Nchild > 1 ) {
/*
std::cout << GridLogMessage<<"Child communicator of "<< std::hex << parent.communicator << std::dec<<std::endl;
std::cout << GridLogMessage<<" parent grid["<< parent._ndimension<<"] ";
for(int d=0;d<parent._processors.size();d++) std::cout << parent._processors[d] << " ";
@ -133,16 +144,31 @@ CartesianCommunicator::CartesianCommunicator(const std::vector<int> &processors,
for(int d=0;d<processors.size();d++) std::cout << processors[d] << " ";
std::cout<<std::endl;
int ierr= MPI_Comm_split(parent.communicator, ccomm,crank,&comm_split);
std::cout << GridLogMessage<<" old rank "<< parent._processor<<" coor ["<< _ndimension <<"] ";
for(int d=0;d<processors.size();d++) std::cout << parent._processor_coor[d] << " ";
std::cout<<std::endl;
std::cout << GridLogMessage<<" new rank "<< crank<<" coor ["<< _ndimension <<"] ";
for(int d=0;d<processors.size();d++) std::cout << ccoor[d] << " ";
std::cout<<std::endl;
std::cout << GridLogMessage<<" new coor ["<< _ndimension <<"] ";
for(int d=0;d<processors.size();d++) std::cout << parent._processor_coor[d] << " ";
std::cout<<std::endl;
*/
int ierr= MPI_Comm_split(parent.communicator,srank,crank,&comm_split);
assert(ierr==0);
//////////////////////////////////////////////////////////////////////////////////////////////////////
// Declare victory
//////////////////////////////////////////////////////////////////////////////////////////////////////
/*
std::cout << GridLogMessage<<"Divided communicator "<< parent._Nprocessors<<" into "
<<Nchild <<" communicators with " << childsize << " ranks"<<std::endl;
<< Nchild <<" communicators with " << childsize << " ranks"<<std::endl;
*/
} else {
comm_split=parent.communicator;
// std::cout << "Passed parental communicator to a new communicator" <<std::endl;
srank = 0;
}
//////////////////////////////////////////////////////////////////////////////////////////////////////
@ -155,9 +181,6 @@ CartesianCommunicator::CartesianCommunicator(const std::vector<int> &processors,
//////////////////////////////////////////////////////////////////////////////////////////////////////
void CartesianCommunicator::InitFromMPICommunicator(const std::vector<int> &processors, MPI_Comm communicator_base)
{
// if ( communicator_base != communicator_world ) {
// std::cout << "Cartesian communicator created with a non-world communicator"<<std::endl;
// }
_ndimension = processors.size();
_processor_coor.resize(_ndimension);
@ -171,10 +194,20 @@ void CartesianCommunicator::InitFromMPICommunicator(const std::vector<int> &proc
}
std::vector<int> periodic(_ndimension,1);
MPI_Cart_create(communicator_base, _ndimension,&_processors[0],&periodic[0],1,&communicator);
MPI_Cart_create(communicator_base, _ndimension,&_processors[0],&periodic[0],0,&communicator);
MPI_Comm_rank(communicator,&_processor);
MPI_Cart_coords(communicator,_processor,_ndimension,&_processor_coor[0]);
if ( communicator_base != communicator_world ) {
std::cout << "Cartesian communicator created with a non-world communicator"<<std::endl;
std::cout << " new communicator rank "<<_processor<< " coor ["<<_ndimension<<"] ";
for(int d=0;d<_processors.size();d++){
std::cout << _processor_coor[d]<<" ";
}
std::cout << std::endl;
}
int Size;
MPI_Comm_size(communicator,&Size);

View File

@ -153,8 +153,9 @@ class CartesianCommunicator {
// Constructors to sub-divide a parent communicator
// and default to comm world
////////////////////////////////////////////////
CartesianCommunicator(const std::vector<int> &processors,const CartesianCommunicator &parent);
CartesianCommunicator(const std::vector<int> &processors,const CartesianCommunicator &parent,int &srank);
CartesianCommunicator(const std::vector<int> &pdimensions_in);
virtual ~CartesianCommunicator();
private:
#if defined (GRID_COMMS_MPI) || defined (GRID_COMMS_MPIT)
@ -262,6 +263,27 @@ class CartesianCommunicator {
// Broadcast a buffer and composite larger
////////////////////////////////////////////////////////////
void Broadcast(int root,void* data, int bytes);
////////////////////////////////////////////////////////////
// All2All down one dimension
////////////////////////////////////////////////////////////
template<class T> void AllToAll(int dim,std::vector<T> &in, std::vector<T> &out){
assert(dim>=0);
assert(dim<_ndimension);
int numnode = _processors[dim];
// std::cerr << " AllToAll in.size() "<<in.size()<<std::endl;
// std::cerr << " AllToAll out.size() "<<out.size()<<std::endl;
assert(in.size()==out.size());
uint64_t bytes=sizeof(T);
uint64_t words=in.size()/numnode;
assert(numnode * words == in.size());
assert(words < (1ULL<<32));
AllToAll(dim,(void *)&in[0],(void *)&out[0],words,bytes);
}
void AllToAll(int dim ,void *in,void *out,uint64_t words,uint64_t bytes);
void AllToAll(void *in,void *out,uint64_t words ,uint64_t bytes);
template<class obj> void Broadcast(int root,obj &data)
{

View File

@ -52,6 +52,15 @@ void CartesianCommunicator::Init(int *argc, char ***argv) {
MPI_Comm_dup (MPI_COMM_WORLD,&communicator_world);
ShmInitGeneric();
}
CartesianCommunicator::~CartesianCommunicator()
{
int MPI_is_finalised;
MPI_Finalized(&MPI_is_finalised);
if (communicator && MPI_is_finalised)
MPI_Comm_free(&communicator);
}
void CartesianCommunicator::GlobalSum(uint32_t &u){
int ierr=MPI_Allreduce(MPI_IN_PLACE,&u,1,MPI_UINT32_T,MPI_SUM,communicator);
assert(ierr==0);
@ -187,6 +196,36 @@ void CartesianCommunicator::Broadcast(int root,void* data, int bytes)
root,
communicator);
assert(ierr==0);
}
void CartesianCommunicator::AllToAll(int dim,void *in,void *out,uint64_t words,uint64_t bytes)
{
std::vector<int> row(_ndimension,1);
assert(dim>=0 && dim<_ndimension);
// Split the communicator
row[dim] = _processors[dim];
int me;
CartesianCommunicator Comm(row,*this,me);
Comm.AllToAll(in,out,words,bytes);
}
void CartesianCommunicator::AllToAll(void *in,void *out,uint64_t words,uint64_t bytes)
{
// MPI is a pain and uses "int" arguments
// 64*64*64*128*16 == 500Million elements of data.
// When 24*4 bytes multiples get 50x 10^9 >>> 2x10^9 Y2K bug.
// (Turns up on 32^3 x 64 Gparity too)
MPI_Datatype object;
int iwords;
int ibytes;
iwords = words;
ibytes = bytes;
assert(words == iwords); // safe to cast to int ?
assert(bytes == ibytes); // safe to cast to int ?
MPI_Type_contiguous(ibytes,MPI_BYTE,&object);
MPI_Type_commit(&object);
MPI_Alltoall(in,iwords,object,out,iwords,object,communicator);
MPI_Type_free(&object);
}
///////////////////////////////////////////////////////
// Should only be used prior to Grid Init finished.
@ -207,5 +246,7 @@ void CartesianCommunicator::BroadcastWorld(int root,void* data, int bytes)
assert(ierr==0);
}
}

View File

@ -712,7 +712,8 @@ double CartesianCommunicator::StencilSendToRecvFromBegin(std::vector<CommsReques
int from,
int bytes,int dir)
{
assert(dir < communicator_halo.size());
int ncomm =communicator_halo.size();
int commdir=dir%ncomm;
MPI_Request xrq;
MPI_Request rrq;
@ -732,14 +733,14 @@ double CartesianCommunicator::StencilSendToRecvFromBegin(std::vector<CommsReques
gfrom = MPI_UNDEFINED;
#endif
if ( gfrom ==MPI_UNDEFINED) {
ierr=MPI_Irecv(recv, bytes, MPI_CHAR,from,from,communicator_halo[dir],&rrq);
ierr=MPI_Irecv(recv, bytes, MPI_CHAR,from,from,communicator_halo[commdir],&rrq);
assert(ierr==0);
list.push_back(rrq);
off_node_bytes+=bytes;
}
if ( gdest == MPI_UNDEFINED ) {
ierr =MPI_Isend(xmit, bytes, MPI_CHAR,dest,_processor,communicator_halo[dir],&xrq);
ierr =MPI_Isend(xmit, bytes, MPI_CHAR,dest,_processor,communicator_halo[commdir],&xrq);
assert(ierr==0);
list.push_back(xrq);
off_node_bytes+=bytes;

View File

@ -53,6 +53,13 @@ void CartesianCommunicator::Init(int *argc, char ***argv) {
ShmInitGeneric();
}
CartesianCommunicator::~CartesianCommunicator()
{
if (communicator && !MPI::Is_finalized())
MPI_Comm_free(&communicator);
}
void CartesianCommunicator::GlobalSum(uint32_t &u){
int ierr=MPI_Allreduce(MPI_IN_PLACE,&u,1,MPI_UINT32_T,MPI_SUM,communicator);
assert(ierr==0);
@ -217,13 +224,14 @@ double CartesianCommunicator::StencilSendToRecvFromBegin(std::vector<CommsReques
{
int myrank = _processor;
int ierr;
assert(dir < communicator_halo.size());
int ncomm =communicator_halo.size();
int commdir=dir%ncomm;
// std::cout << " sending on communicator "<<dir<<" " <<communicator_halo[dir]<<std::endl;
// Give the CPU to MPI immediately; can use threads to overlap optionally
MPI_Request req[2];
MPI_Irecv(recv,bytes,MPI_CHAR,recv_from_rank,recv_from_rank, communicator_halo[dir],&req[1]);
MPI_Isend(xmit,bytes,MPI_CHAR,xmit_to_rank ,myrank , communicator_halo[dir],&req[0]);
MPI_Irecv(recv,bytes,MPI_CHAR,recv_from_rank,recv_from_rank, communicator_halo[commdir],&req[1]);
MPI_Isend(xmit,bytes,MPI_CHAR,xmit_to_rank ,myrank , communicator_halo[commdir],&req[0]);
list.push_back(req[0]);
list.push_back(req[1]);
@ -242,13 +250,14 @@ double CartesianCommunicator::StencilSendToRecvFrom(void *xmit,
{
int myrank = _processor;
int ierr;
assert(dir < communicator_halo.size());
// std::cout << " sending on communicator "<<dir<<" " <<communicator_halo[dir]<<std::endl;
// std::cout << " sending on communicator "<<dir<<" " <<communicator_halo.size()<< <std::endl;
int ncomm =communicator_halo.size();
int commdir=dir%ncomm;
// Give the CPU to MPI immediately; can use threads to overlap optionally
MPI_Request req[2];
MPI_Irecv(recv,bytes,MPI_CHAR,recv_from_rank,recv_from_rank, communicator_halo[dir],&req[1]);
MPI_Isend(xmit,bytes,MPI_CHAR,xmit_to_rank ,myrank , communicator_halo[dir],&req[0]);
MPI_Irecv(recv,bytes,MPI_CHAR,recv_from_rank,recv_from_rank, communicator_halo[commdir],&req[1]);
MPI_Isend(xmit,bytes,MPI_CHAR,xmit_to_rank ,myrank , communicator_halo[commdir],&req[0]);
MPI_Waitall(2, req, MPI_STATUSES_IGNORE);
return 2.0*bytes;
}

View File

@ -38,8 +38,8 @@ void CartesianCommunicator::Init(int *argc, char *** arv)
ShmInitGeneric();
}
CartesianCommunicator::CartesianCommunicator(const std::vector<int> &processors,const CartesianCommunicator &parent)
: CartesianCommunicator(processors) {}
CartesianCommunicator::CartesianCommunicator(const std::vector<int> &processors,const CartesianCommunicator &parent,int &srank)
: CartesianCommunicator(processors) { srank=0;}
CartesianCommunicator::CartesianCommunicator(const std::vector<int> &processors)
{
@ -56,6 +56,8 @@ CartesianCommunicator::CartesianCommunicator(const std::vector<int> &processors)
}
}
CartesianCommunicator::~CartesianCommunicator(){}
void CartesianCommunicator::GlobalSum(float &){}
void CartesianCommunicator::GlobalSumVector(float *,int N){}
void CartesianCommunicator::GlobalSum(double &){}
@ -98,6 +100,14 @@ void CartesianCommunicator::SendToRecvFromComplete(std::vector<CommsRequest_t> &
{
assert(0);
}
void CartesianCommunicator::AllToAll(int dim,void *in,void *out,uint64_t words,uint64_t bytes)
{
bcopy(in,out,bytes*words);
}
void CartesianCommunicator::AllToAll(void *in,void *out,uint64_t words,uint64_t bytes)
{
bcopy(in,out,bytes*words);
}
int CartesianCommunicator::RankWorld(void){return 0;}
void CartesianCommunicator::Barrier(void){}

View File

@ -109,8 +109,8 @@ inline void blockProject(Lattice<iVector<CComplex,nbasis > > &coarseData,
coarseData=zero;
// Loop with a cache friendly loop ordering
for(int sf=0;sf<fine->oSites();sf++){
// Loop over coars parallel, and then loop over fine associated with coarse.
parallel_for(int sf=0;sf<fine->oSites();sf++){
int sc;
std::vector<int> coor_c(_ndimension);
@ -119,8 +119,9 @@ inline void blockProject(Lattice<iVector<CComplex,nbasis > > &coarseData,
for(int d=0;d<_ndimension;d++) coor_c[d]=coor_f[d]/block_r[d];
Lexicographic::IndexFromCoor(coor_c,sc,coarse->_rdimensions);
PARALLEL_CRITICAL
for(int i=0;i<nbasis;i++) {
coarseData._odata[sc](i)=coarseData._odata[sc](i)
+ innerProduct(Basis[i]._odata[sf],fineData._odata[sf]);
@ -139,6 +140,7 @@ inline void blockZAXPY(Lattice<vobj> &fineZ,
GridBase * coarse= coarseA._grid;
fineZ.checkerboard=fineX.checkerboard;
assert(fineX.checkerboard==fineY.checkerboard);
subdivides(coarse,fine); // require they map
conformable(fineX,fineY);
conformable(fineX,fineZ);
@ -180,9 +182,10 @@ template<class vobj,class CComplex>
GridBase *coarse(CoarseInner._grid);
GridBase *fine (fineX._grid);
Lattice<dotp> fine_inner(fine);
Lattice<dotp> fine_inner(fine); fine_inner.checkerboard = fineX.checkerboard;
Lattice<dotp> coarse_inner(coarse);
// Precision promotion?
fine_inner = localInnerProduct(fineX,fineY);
blockSum(coarse_inner,fine_inner);
parallel_for(int ss=0;ss<coarse->oSites();ss++){
@ -193,7 +196,7 @@ template<class vobj,class CComplex>
inline void blockNormalise(Lattice<CComplex> &ip,Lattice<vobj> &fineX)
{
GridBase *coarse = ip._grid;
Lattice<vobj> zz(fineX._grid); zz=zero;
Lattice<vobj> zz(fineX._grid); zz=zero; zz.checkerboard=fineX.checkerboard;
blockInnerProduct(ip,fineX,fineX);
ip = pow(ip,-0.5);
blockZAXPY(fineX,ip,fineX,zz);
@ -216,19 +219,25 @@ inline void blockSum(Lattice<vobj> &coarseData,const Lattice<vobj> &fineData)
block_r[d] = fine->_rdimensions[d] / coarse->_rdimensions[d];
}
// Turn this around to loop threaded over sc and interior loop
// over sf would thread better
coarseData=zero;
for(int sf=0;sf<fine->oSites();sf++){
parallel_region {
int sc;
std::vector<int> coor_c(_ndimension);
std::vector<int> coor_f(_ndimension);
Lexicographic::CoorFromIndex(coor_f,sf,fine->_rdimensions);
for(int d=0;d<_ndimension;d++) coor_c[d]=coor_f[d]/block_r[d];
Lexicographic::IndexFromCoor(coor_c,sc,coarse->_rdimensions);
coarseData._odata[sc]=coarseData._odata[sc]+fineData._odata[sf];
parallel_for_internal(int sf=0;sf<fine->oSites();sf++){
Lexicographic::CoorFromIndex(coor_f,sf,fine->_rdimensions);
for(int d=0;d<_ndimension;d++) coor_c[d]=coor_f[d]/block_r[d];
Lexicographic::IndexFromCoor(coor_c,sc,coarse->_rdimensions);
PARALLEL_CRITICAL
coarseData._odata[sc]=coarseData._odata[sc]+fineData._odata[sf];
}
}
return;
}
@ -238,7 +247,7 @@ inline void blockPick(GridBase *coarse,const Lattice<vobj> &unpicked,Lattice<vob
{
GridBase * fine = unpicked._grid;
Lattice<vobj> zz(fine);
Lattice<vobj> zz(fine); zz.checkerboard = unpicked.checkerboard;
Lattice<iScalar<vInteger> > fcoor(fine);
zz = zero;
@ -303,20 +312,21 @@ inline void blockPromote(const Lattice<iVector<CComplex,nbasis > > &coarseData,
}
// Loop with a cache friendly loop ordering
for(int sf=0;sf<fine->oSites();sf++){
parallel_region {
int sc;
std::vector<int> coor_c(_ndimension);
std::vector<int> coor_f(_ndimension);
Lexicographic::CoorFromIndex(coor_f,sf,fine->_rdimensions);
for(int d=0;d<_ndimension;d++) coor_c[d]=coor_f[d]/block_r[d];
Lexicographic::IndexFromCoor(coor_c,sc,coarse->_rdimensions);
for(int i=0;i<nbasis;i++) {
if(i==0) fineData._odata[sf]=coarseData._odata[sc](i) * Basis[i]._odata[sf];
else fineData._odata[sf]=fineData._odata[sf]+coarseData._odata[sc](i)*Basis[i]._odata[sf];
parallel_for_internal(int sf=0;sf<fine->oSites();sf++){
Lexicographic::CoorFromIndex(coor_f,sf,fine->_rdimensions);
for(int d=0;d<_ndimension;d++) coor_c[d]=coor_f[d]/block_r[d];
Lexicographic::IndexFromCoor(coor_c,sc,coarse->_rdimensions);
for(int i=0;i<nbasis;i++) {
if(i==0) fineData._odata[sf]=coarseData._odata[sc](i) * Basis[i]._odata[sf];
else fineData._odata[sf]=fineData._odata[sf]+coarseData._odata[sc](i)*Basis[i]._odata[sf];
}
}
}
return;
@ -684,6 +694,315 @@ void precisionChange(Lattice<VobjOut> &out, const Lattice<VobjIn> &in){
merge(out._odata[out_oidx], ptrs, 0);
}
}
////////////////////////////////////////////////////////////////////////////////
// Communicate between grids
////////////////////////////////////////////////////////////////////////////////
//
// All to all plan
//
// Subvolume on fine grid is v. Vectors a,b,c,d
//
///////////////////////////////////////////////////////////////////////////////////////////////////////////
// SIMPLEST CASE:
///////////////////////////////////////////////////////////////////////////////////////////////////////////
// Mesh of nodes (2) ; subdivide to 1 subdivisions
//
// Lex ord:
// N0 va0 vb0 N1 va1 vb1
//
// For each dimension do an all to all
//
// full AllToAll(0)
// N0 va0 va1 N1 vb0 vb1
//
// REARRANGE
// N0 va01 N1 vb01
//
// Must also rearrange data to get into the NEW lex order of grid at each stage. Some kind of "insert/extract".
// NB: Easiest to programme if keep in lex order.
//
///////////////////////////////////////////////////////////////////////////////////////////////////////////
// SIMPLE CASE:
///////////////////////////////////////////////////////////////////////////////////////////////////////////
//
// Mesh of nodes (2x2) ; subdivide to 1x1 subdivisions
//
// Lex ord:
// N0 va0 vb0 vc0 vd0 N1 va1 vb1 vc1 vd1
// N2 va2 vb2 vc2 vd2 N3 va3 vb3 vc3 vd3
//
// Ratio = full[dim] / split[dim]
//
// For each dimension do an all to all; get Nvec -> Nvec / ratio
// Ldim -> Ldim * ratio
// LocalVol -> LocalVol * ratio
// full AllToAll(0)
// N0 va0 vb0 va1 vb1 N1 vc0 vd0 vc1 vd1
// N2 va2 vb2 va3 vb3 N3 vc2 vd2 vc3 vd3
//
// REARRANGE
// N0 va01 vb01 N1 vc01 vd01
// N2 va23 vb23 N3 vc23 vd23
//
// full AllToAll(1) // Not what is wanted. FIXME
// N0 va01 va23 N1 vc01 vc23
// N2 vb01 vb23 N3 vd01 vd23
//
// REARRANGE
// N0 va0123 N1 vc0123
// N2 vb0123 N3 vd0123
//
// Must also rearrange data to get into the NEW lex order of grid at each stage. Some kind of "insert/extract".
// NB: Easiest to programme if keep in lex order.
//
/////////////////////////////////////////////////////////
template<class Vobj>
void Grid_split(std::vector<Lattice<Vobj> > & full,Lattice<Vobj> & split)
{
typedef typename Vobj::scalar_object Sobj;
int full_vecs = full.size();
assert(full_vecs>=1);
GridBase * full_grid = full[0]._grid;
GridBase *split_grid = split._grid;
int ndim = full_grid->_ndimension;
int full_nproc = full_grid->_Nprocessors;
int split_nproc =split_grid->_Nprocessors;
////////////////////////////////
// Checkerboard management
////////////////////////////////
int cb = full[0].checkerboard;
split.checkerboard = cb;
//////////////////////////////
// Checks
//////////////////////////////
assert(full_grid->_ndimension==split_grid->_ndimension);
for(int n=0;n<full_vecs;n++){
assert(full[n].checkerboard == cb);
for(int d=0;d<ndim;d++){
assert(full[n]._grid->_gdimensions[d]==split._grid->_gdimensions[d]);
assert(full[n]._grid->_fdimensions[d]==split._grid->_fdimensions[d]);
}
}
int nvector =full_nproc/split_nproc;
assert(nvector*split_nproc==full_nproc);
assert(nvector == full_vecs);
std::vector<int> ratio(ndim);
for(int d=0;d<ndim;d++){
ratio[d] = full_grid->_processors[d]/ split_grid->_processors[d];
}
uint64_t lsites = full_grid->lSites();
uint64_t sz = lsites * nvector;
std::vector<Sobj> tmpdata(sz);
std::vector<Sobj> alldata(sz);
std::vector<Sobj> scalardata(lsites);
for(int v=0;v<nvector;v++){
unvectorizeToLexOrdArray(scalardata,full[v]);
parallel_for(int site=0;site<lsites;site++){
alldata[v*lsites+site] = scalardata[site];
}
}
int nvec = nvector; // Counts down to 1 as we collapse dims
std::vector<int> ldims = full_grid->_ldimensions;
std::vector<int> lcoor(ndim);
for(int d=ndim-1;d>=0;d--){
if ( ratio[d] != 1 ) {
full_grid ->AllToAll(d,alldata,tmpdata);
// std::cout << GridLogMessage << "Grid_split: dim " <<d<<" ratio "<<ratio[d]<<" nvec "<<nvec<<" procs "<<split_grid->_processors[d]<<std::endl;
// for(int v=0;v<nvec;v++){
// std::cout << "Grid_split: alldata["<<v<<"] " << alldata[v] <<std::endl;
// std::cout << "Grid_split: tmpdata["<<v<<"] " << tmpdata[v] <<std::endl;
// }
//////////////////////////////////////////
//Local volume for this dimension is expanded by ratio of processor extents
// Number of vectors is decreased by same factor
// Rearrange to lexico for bigger volume
//////////////////////////////////////////
nvec /= ratio[d];
auto rdims = ldims; rdims[d] *= ratio[d];
auto rsites= lsites*ratio[d];
for(int v=0;v<nvec;v++){
// For loop over each site within old subvol
for(int lsite=0;lsite<lsites;lsite++){
Lexicographic::CoorFromIndex(lcoor, lsite, ldims);
for(int r=0;r<ratio[d];r++){ // ratio*nvec terms
auto rcoor = lcoor; rcoor[d] += r*ldims[d];
int rsite; Lexicographic::IndexFromCoor(rcoor, rsite, rdims);
rsite += v * rsites;
int rmul=nvec*lsites;
int vmul= lsites;
alldata[rsite] = tmpdata[lsite+r*rmul+v*vmul];
// if ( lsite==0 ) {
// std::cout << "Grid_split: grow alldata["<<rsite<<"] " << alldata[rsite] << " <- tmpdata["<< lsite+r*rmul+v*vmul<<"] "<<tmpdata[lsite+r*rmul+v*vmul] <<std::endl;
// }
}
}
}
ldims[d]*= ratio[d];
lsites *= ratio[d];
if ( split_grid->_processors[d] > 1 ) {
tmpdata = alldata;
split_grid->AllToAll(d,tmpdata,alldata);
}
}
}
vectorizeFromLexOrdArray(alldata,split);
}
template<class Vobj>
void Grid_split(Lattice<Vobj> &full,Lattice<Vobj> & split)
{
int nvector = full._grid->_Nprocessors / split._grid->_Nprocessors;
std::vector<Lattice<Vobj> > full_v(nvector,full._grid);
for(int n=0;n<nvector;n++){
full_v[n] = full;
}
Grid_split(full_v,split);
}
template<class Vobj>
void Grid_unsplit(std::vector<Lattice<Vobj> > & full,Lattice<Vobj> & split)
{
typedef typename Vobj::scalar_object Sobj;
int full_vecs = full.size();
assert(full_vecs>=1);
GridBase * full_grid = full[0]._grid;
GridBase *split_grid = split._grid;
int ndim = full_grid->_ndimension;
int full_nproc = full_grid->_Nprocessors;
int split_nproc =split_grid->_Nprocessors;
////////////////////////////////
// Checkerboard management
////////////////////////////////
int cb = full[0].checkerboard;
split.checkerboard = cb;
//////////////////////////////
// Checks
//////////////////////////////
assert(full_grid->_ndimension==split_grid->_ndimension);
for(int n=0;n<full_vecs;n++){
assert(full[n].checkerboard == cb);
for(int d=0;d<ndim;d++){
assert(full[n]._grid->_gdimensions[d]==split._grid->_gdimensions[d]);
assert(full[n]._grid->_fdimensions[d]==split._grid->_fdimensions[d]);
}
}
int nvector =full_nproc/split_nproc;
assert(nvector*split_nproc==full_nproc);
assert(nvector == full_vecs);
std::vector<int> ratio(ndim);
for(int d=0;d<ndim;d++){
ratio[d] = full_grid->_processors[d]/ split_grid->_processors[d];
}
uint64_t lsites = full_grid->lSites();
uint64_t sz = lsites * nvector;
std::vector<Sobj> tmpdata(sz);
std::vector<Sobj> alldata(sz);
std::vector<Sobj> scalardata(lsites);
unvectorizeToLexOrdArray(alldata,split);
/////////////////////////////////////////////////////////////////
// Start from split grid and work towards full grid
/////////////////////////////////////////////////////////////////
std::vector<int> lcoor(ndim);
std::vector<int> rcoor(ndim);
int nvec = 1;
lsites = split_grid->lSites();
std::vector<int> ldims = split_grid->_ldimensions;
// for(int d=ndim-1;d>=0;d--){
for(int d=0;d<ndim;d++){
if ( ratio[d] != 1 ) {
if ( split_grid->_processors[d] > 1 ) {
tmpdata = alldata;
split_grid->AllToAll(d,tmpdata,alldata);
}
//////////////////////////////////////////
//Local volume for this dimension is expanded by ratio of processor extents
// Number of vectors is decreased by same factor
// Rearrange to lexico for bigger volume
//////////////////////////////////////////
auto rsites= lsites/ratio[d];
auto rdims = ldims; rdims[d]/=ratio[d];
for(int v=0;v<nvec;v++){
// rsite, rcoor --> smaller local volume
// lsite, lcoor --> bigger original (single node?) volume
// For loop over each site within smaller subvol
for(int rsite=0;rsite<rsites;rsite++){
Lexicographic::CoorFromIndex(rcoor, rsite, rdims);
int lsite;
for(int r=0;r<ratio[d];r++){
lcoor = rcoor; lcoor[d] += r*rdims[d];
Lexicographic::IndexFromCoor(lcoor, lsite, ldims); lsite += v * lsites;
int rmul=nvec*rsites;
int vmul= rsites;
tmpdata[rsite+r*rmul+v*vmul]=alldata[lsite];
}
}
}
nvec *= ratio[d];
ldims[d]=rdims[d];
lsites =rsites;
full_grid ->AllToAll(d,tmpdata,alldata);
}
}
lsites = full_grid->lSites();
for(int v=0;v<nvector;v++){
assert(v<full.size());
parallel_for(int site=0;site<lsites;site++){
scalardata[site] = alldata[v*lsites+site];
}
vectorizeFromLexOrdArray(scalardata,full[v]);
}
}
}
#endif

View File

@ -50,7 +50,7 @@ namespace Grid {
return (status==0) ? res.get() : name ;
}
GridStopWatch Logger::StopWatch;
GridStopWatch Logger::GlobalStopWatch;
int Logger::timestamp;
std::ostream Logger::devnull(0);
@ -59,13 +59,15 @@ void GridLogTimestamp(int on){
}
Colours GridLogColours(0);
GridLogger GridLogError(1, "Error", GridLogColours, "RED");
GridLogger GridLogIRL (1, "IRL" , GridLogColours, "NORMAL");
GridLogger GridLogSolver (1, "Solver", GridLogColours, "NORMAL");
GridLogger GridLogError (1, "Error" , GridLogColours, "RED");
GridLogger GridLogWarning(1, "Warning", GridLogColours, "YELLOW");
GridLogger GridLogMessage(1, "Message", GridLogColours, "NORMAL");
GridLogger GridLogDebug(1, "Debug", GridLogColours, "PURPLE");
GridLogger GridLogDebug (1, "Debug", GridLogColours, "PURPLE");
GridLogger GridLogPerformance(1, "Performance", GridLogColours, "GREEN");
GridLogger GridLogIterative(1, "Iterative", GridLogColours, "BLUE");
GridLogger GridLogIntegrator(1, "Integrator", GridLogColours, "BLUE");
GridLogger GridLogIterative (1, "Iterative", GridLogColours, "BLUE");
GridLogger GridLogIntegrator (1, "Integrator", GridLogColours, "BLUE");
void GridLogConfigure(std::vector<std::string> &logstreams) {
GridLogError.Active(0);

View File

@ -85,12 +85,15 @@ class Logger {
protected:
Colours &Painter;
int active;
int timing_mode;
static int timestamp;
std::string name, topName;
std::string COLOUR;
public:
static GridStopWatch StopWatch;
static GridStopWatch GlobalStopWatch;
GridStopWatch LocalStopWatch;
GridStopWatch *StopWatch;
static std::ostream devnull;
std::string background() {return Painter.colour["NORMAL"];}
@ -101,22 +104,38 @@ public:
name(nm),
topName(topNm),
Painter(col_class),
COLOUR(col) {} ;
timing_mode(0),
COLOUR(col)
{
StopWatch = & GlobalStopWatch;
};
void Active(int on) {active = on;};
int isActive(void) {return active;};
static void Timestamp(int on) {timestamp = on;};
void Reset(void) {
StopWatch->Reset();
StopWatch->Start();
}
void TimingMode(int on) {
timing_mode = on;
if(on) {
StopWatch = &LocalStopWatch;
Reset();
}
}
friend std::ostream& operator<< (std::ostream& stream, Logger& log){
if ( log.active ) {
stream << log.background()<< std::setw(8) << std::left << log.topName << log.background()<< " : ";
stream << log.colour() << std::setw(10) << std::left << log.name << log.background() << " : ";
stream << log.background()<< std::left << log.topName << log.background()<< " : ";
stream << log.colour() << std::left << log.name << log.background() << " : ";
if ( log.timestamp ) {
StopWatch.Stop();
GridTime now = StopWatch.Elapsed();
StopWatch.Start();
stream << log.evidence()<< now << log.background() << " : " ;
log.StopWatch->Stop();
GridTime now = log.StopWatch->Elapsed();
if ( log.timing_mode==1 ) log.StopWatch->Reset();
log.StopWatch->Start();
stream << log.evidence()<< std::setw(6)<<now << log.background() << " : " ;
}
stream << log.colour();
return stream;
@ -135,6 +154,8 @@ public:
void GridLogConfigure(std::vector<std::string> &logstreams);
extern GridLogger GridLogIRL;
extern GridLogger GridLogSolver;
extern GridLogger GridLogError;
extern GridLogger GridLogWarning;
extern GridLogger GridLogMessage;

View File

@ -261,7 +261,7 @@ class BinaryIO {
GridBase *grid,
std::vector<fobj> &iodata,
std::string file,
int offset,
Integer offset,
const std::string &format, int control,
uint32_t &nersc_csum,
uint32_t &scidac_csuma,
@ -356,7 +356,7 @@ class BinaryIO {
if ( (control & BINARYIO_LEXICOGRAPHIC) && (nrank > 1) ) {
#ifdef USE_MPI_IO
std::cout<< GridLogMessage<< "MPI read I/O "<< file<< std::endl;
std::cout<< GridLogMessage<<"IOobject: MPI read I/O "<< file<< std::endl;
ierr=MPI_File_open(grid->communicator,(char *) file.c_str(), MPI_MODE_RDONLY, MPI_INFO_NULL, &fh); assert(ierr==0);
ierr=MPI_File_set_view(fh, disp, mpiObject, fileArray, "native", MPI_INFO_NULL); assert(ierr==0);
ierr=MPI_File_read_all(fh, &iodata[0], 1, localArray, &status); assert(ierr==0);
@ -367,7 +367,7 @@ class BinaryIO {
assert(0);
#endif
} else {
std::cout << GridLogMessage << "C++ read I/O " << file << " : "
std::cout << GridLogMessage <<"IOobject: C++ read I/O " << file << " : "
<< iodata.size() * sizeof(fobj) << " bytes" << std::endl;
std::ifstream fin;
fin.open(file, std::ios::binary | std::ios::in);
@ -413,9 +413,9 @@ class BinaryIO {
timer.Start();
if ( (control & BINARYIO_LEXICOGRAPHIC) && (nrank > 1) ) {
#ifdef USE_MPI_IO
std::cout << GridLogMessage << "MPI write I/O " << file << std::endl;
std::cout << GridLogMessage <<"IOobject: MPI write I/O " << file << std::endl;
ierr = MPI_File_open(grid->communicator, (char *)file.c_str(), MPI_MODE_RDWR | MPI_MODE_CREATE, MPI_INFO_NULL, &fh);
std::cout << GridLogMessage << "Checking for errors" << std::endl;
// std::cout << GridLogMessage << "Checking for errors" << std::endl;
if (ierr != MPI_SUCCESS)
{
char error_string[BUFSIZ];
@ -444,48 +444,56 @@ class BinaryIO {
assert(0);
#endif
} else {
std::cout << GridLogMessage << "IOobject: C++ write I/O " << file << " : "
<< iodata.size() * sizeof(fobj) << " bytes" << std::endl;
std::ofstream fout;
fout.exceptions ( std::fstream::failbit | std::fstream::badbit );
try {
fout.open(file,std::ios::binary|std::ios::out|std::ios::in);
} catch (const std::fstream::failure& exc) {
std::cout << GridLogError << "Error in opening the file " << file << " for output" <<std::endl;
std::cout << GridLogError << "Exception description: " << exc.what() << std::endl;
std::cout << GridLogError << "Probable cause: wrong path, inaccessible location "<< std::endl;
#ifdef USE_MPI_IO
MPI_Abort(MPI_COMM_WORLD,1);
#else
exit(1);
#endif
}
std::cout << GridLogMessage<< "C++ write I/O "<< file<<" : "
<< iodata.size()*sizeof(fobj)<<" bytes"<<std::endl;
if ( control & BINARYIO_MASTER_APPEND ) {
fout.seekp(0,fout.end);
} else {
fout.seekp(offset+myrank*lsites*sizeof(fobj));
fout.exceptions ( std::fstream::failbit | std::fstream::badbit );
try {
fout.open(file,std::ios::binary|std::ios::out|std::ios::in);
} catch (const std::fstream::failure& exc) {
std::cout << GridLogError << "Error in opening the file " << file << " for output" <<std::endl;
std::cout << GridLogError << "Exception description: " << exc.what() << std::endl;
std::cout << GridLogError << "Probable cause: wrong path, inaccessible location "<< std::endl;
#ifdef USE_MPI_IO
MPI_Abort(MPI_COMM_WORLD,1);
#else
exit(1);
#endif
}
if ( control & BINARYIO_MASTER_APPEND ) {
try {
fout.seekp(0,fout.end);
} catch (const std::fstream::failure& exc) {
std::cout << "Exception in seeking file end " << file << std::endl;
}
} else {
try {
fout.seekp(offset+myrank*lsites*sizeof(fobj));
} catch (const std::fstream::failure& exc) {
std::cout << "Exception in seeking file " << file <<" offset "<< offset << std::endl;
}
}
try {
fout.write((char *)&iodata[0],iodata.size()*sizeof(fobj));//assert( fout.fail()==0);
}
catch (const std::fstream::failure& exc) {
std::cout << "Exception in writing file " << file << std::endl;
std::cout << GridLogError << "Exception description: "<< exc.what() << std::endl;
#ifdef USE_MPI_IO
MPI_Abort(MPI_COMM_WORLD,1);
#else
exit(1);
#endif
}
try {
fout.write((char *)&iodata[0],iodata.size()*sizeof(fobj));//assert( fout.fail()==0);
}
catch (const std::fstream::failure& exc) {
std::cout << "Exception in writing file " << file << std::endl;
std::cout << GridLogError << "Exception description: "<< exc.what() << std::endl;
#ifdef USE_MPI_IO
MPI_Abort(MPI_COMM_WORLD,1);
#else
exit(1);
#endif
}
fout.close();
}
timer.Stop();
}
}
timer.Stop();
}
std::cout<<GridLogMessage<<"IOobject: ";
if ( control & BINARYIO_READ) std::cout << " read ";
else std::cout << " write ";
@ -515,7 +523,7 @@ class BinaryIO {
static inline void readLatticeObject(Lattice<vobj> &Umu,
std::string file,
munger munge,
int offset,
Integer offset,
const std::string &format,
uint32_t &nersc_csum,
uint32_t &scidac_csuma,
@ -552,7 +560,7 @@ class BinaryIO {
static inline void writeLatticeObject(Lattice<vobj> &Umu,
std::string file,
munger munge,
int offset,
Integer offset,
const std::string &format,
uint32_t &nersc_csum,
uint32_t &scidac_csuma,
@ -589,7 +597,7 @@ class BinaryIO {
static inline void readRNG(GridSerialRNG &serial,
GridParallelRNG &parallel,
std::string file,
int offset,
Integer offset,
uint32_t &nersc_csum,
uint32_t &scidac_csuma,
uint32_t &scidac_csumb)
@ -651,7 +659,7 @@ class BinaryIO {
static inline void writeRNG(GridSerialRNG &serial,
GridParallelRNG &parallel,
std::string file,
int offset,
Integer offset,
uint32_t &nersc_csum,
uint32_t &scidac_csuma,
uint32_t &scidac_csumb)

View File

@ -147,7 +147,7 @@ namespace QCD {
_scidacRecord = sr;
std::cout << GridLogMessage << "Build SciDAC datatype " <<sr.datatype<<std::endl;
// std::cout << GridLogMessage << "Build SciDAC datatype " <<sr.datatype<<std::endl;
}
///////////////////////////////////////////////////////
@ -159,7 +159,7 @@ namespace QCD {
uint32_t scidac_checksumb = stoull(scidacChecksum_.sumb,0,16);
if ( scidac_csuma !=scidac_checksuma) return 0;
if ( scidac_csumb !=scidac_checksumb) return 0;
return 1;
return 1;
}
////////////////////////////////////////////////////////////////////////////////////
@ -224,7 +224,7 @@ class GridLimeReader : public BinaryIO {
assert(PayloadSize == file_bytes);// Must match or user error
off_t offset= ftell(File);
uint64_t offset= ftello(File);
// std::cout << " ReadLatticeObject from offset "<<offset << std::endl;
BinarySimpleMunger<sobj,sobj> munge;
BinaryIO::readLatticeObject< vobj, sobj >(field, filename, munge, offset, format,nersc_csum,scidac_csuma,scidac_csumb);
@ -237,7 +237,7 @@ class GridLimeReader : public BinaryIO {
/////////////////////////////////////////////
// Verify checksums
/////////////////////////////////////////////
scidacChecksumVerify(scidacChecksum_,scidac_csuma,scidac_csumb);
assert(scidacChecksumVerify(scidacChecksum_,scidac_csuma,scidac_csumb)==1);
return;
}
}
@ -253,16 +253,13 @@ class GridLimeReader : public BinaryIO {
while ( limeReaderNextRecord(LimeR) == LIME_SUCCESS ) {
// std::cout << GridLogMessage<< " readLimeObject seeking "<< record_name <<" found record :" <<limeReaderType(LimeR) <<std::endl;
uint64_t nbytes = limeReaderBytes(LimeR);//size of this record (configuration)
if ( !strncmp(limeReaderType(LimeR), record_name.c_str(),strlen(record_name.c_str()) ) ) {
// std::cout << GridLogMessage<< " readLimeObject matches ! " << record_name <<std::endl;
std::vector<char> xmlc(nbytes+1,'\0');
limeReaderReadData((void *)&xmlc[0], &nbytes, LimeR);
// std::cout << GridLogMessage<< " readLimeObject matches XML " << &xmlc[0] <<std::endl;
XmlReader RD(&xmlc[0],"");
@ -332,7 +329,7 @@ class GridLimeWriter : public BinaryIO {
err=limeWriteRecordData(&xmlstring[0], &nbytes, LimeW); assert(err>=0);
err=limeWriterCloseRecord(LimeW); assert(err>=0);
limeDestroyHeader(h);
// std::cout << " File offset is now"<<ftell(File) << std::endl;
// std::cout << " File offset is now"<<ftello(File) << std::endl;
}
////////////////////////////////////////////
// Write a generic lattice field and csum
@ -349,7 +346,6 @@ class GridLimeWriter : public BinaryIO {
uint64_t PayloadSize = sizeof(sobj) * field._grid->_gsites;
createLimeRecordHeader(record_name, 0, 0, PayloadSize);
// std::cout << "W sizeof(sobj)" <<sizeof(sobj)<<std::endl;
// std::cout << "W Gsites " <<field._grid->_gsites<<std::endl;
// std::cout << "W Payload expected " <<PayloadSize<<std::endl;
@ -361,18 +357,20 @@ class GridLimeWriter : public BinaryIO {
// These are both buffered, so why I think this code is right is as follows.
//
// i) write record header to FILE *File, telegraphing the size.
// ii) ftell reads the offset from FILE *File .
// ii) ftello reads the offset from FILE *File .
// iii) iostream / MPI Open independently seek this offset. Write sequence direct to disk.
// Closes iostream and flushes.
// iv) fseek on FILE * to end of this disjoint section.
// v) Continue writing scidac record.
////////////////////////////////////////////////////////////////////
off_t offset = ftell(File);
uint64_t offset = ftello(File);
// std::cout << " Writing to offset "<<offset << std::endl;
std::string format = getFormatString<vobj>();
BinarySimpleMunger<sobj,sobj> munge;
BinaryIO::writeLatticeObject<vobj,sobj>(field, filename, munge, offset, format,nersc_csum,scidac_csuma,scidac_csumb);
// fseek(File,0,SEEK_END); offset = ftello(File);std::cout << " offset now "<<offset << std::endl;
err=limeWriterCloseRecord(LimeW); assert(err>=0);
////////////////////////////////////////
// Write checksum element, propagaing forward from the BinaryIO
// Always pair a checksum with a binary object, and close message
@ -382,7 +380,7 @@ class GridLimeWriter : public BinaryIO {
std::stringstream streamb; streamb << std::hex << scidac_csumb;
checksum.suma= streama.str();
checksum.sumb= streamb.str();
std::cout << GridLogMessage<<" writing scidac checksums "<<std::hex<<scidac_csuma<<"/"<<scidac_csumb<<std::dec<<std::endl;
// std::cout << GridLogMessage<<" writing scidac checksums "<<std::hex<<scidac_csuma<<"/"<<scidac_csumb<<std::dec<<std::endl;
writeLimeObject(0,1,checksum,std::string("scidacChecksum"),std::string(SCIDAC_CHECKSUM));
}
};
@ -642,7 +640,7 @@ class IldgReader : public GridLimeReader {
// Copy out the string
std::vector<char> xmlc(nbytes+1,'\0');
limeReaderReadData((void *)&xmlc[0], &nbytes, LimeR);
std::cout << GridLogMessage<< "Non binary record :" <<limeReaderType(LimeR) <<std::endl; //<<"\n"<<(&xmlc[0])<<std::endl;
// std::cout << GridLogMessage<< "Non binary record :" <<limeReaderType(LimeR) <<std::endl; //<<"\n"<<(&xmlc[0])<<std::endl;
//////////////////////////////////
// ILDG format record
@ -686,7 +684,7 @@ class IldgReader : public GridLimeReader {
std::string xmls(&xmlc[0]);
// is it a USQCD info field
if ( xmls.find(std::string("usqcdInfo")) != std::string::npos ) {
std::cout << GridLogMessage<<"...found a usqcdInfo field"<<std::endl;
// std::cout << GridLogMessage<<"...found a usqcdInfo field"<<std::endl;
XmlReader RD(&xmlc[0],"");
read(RD,"usqcdInfo",usqcdInfo_);
found_usqcdInfo = 1;
@ -704,8 +702,7 @@ class IldgReader : public GridLimeReader {
// Binary data
/////////////////////////////////
std::cout << GridLogMessage << "ILDG Binary record found : " ILDG_BINARY_DATA << std::endl;
off_t offset= ftell(File);
uint64_t offset= ftello(File);
if ( format == std::string("IEEE64BIG") ) {
GaugeSimpleMunger<dobj, sobj> munge;
BinaryIO::readLatticeObject< vobj, dobj >(Umu, filename, munge, offset, format,nersc_csum,scidac_csuma,scidac_csumb);

View File

@ -61,10 +61,10 @@ namespace QCD {
}
/***************************************************************
/* Additional EOFA operators only called outside the inverter.
/* Since speed is not essential, simple axpby-style
/* implementations should be fine.
/***************************************************************/
* Additional EOFA operators only called outside the inverter.
* Since speed is not essential, simple axpby-style
* implementations should be fine.
***************************************************************/
template<class Impl>
void DomainWallEOFAFermion<Impl>::Omega(const FermionField& psi, FermionField& Din, int sign, int dag)
{
@ -116,8 +116,8 @@ namespace QCD {
}
/********************************************************************
/* Performance critical fermion operators called inside the inverter
/********************************************************************/
* Performance critical fermion operators called inside the inverter
********************************************************************/
template<class Impl>
void DomainWallEOFAFermion<Impl>::M5D(const FermionField& psi, FermionField& chi)

View File

@ -77,11 +77,11 @@ namespace QCD {
}
}
/***************************************************************
/* Additional EOFA operators only called outside the inverter.
/* Since speed is not essential, simple axpby-style
/* implementations should be fine.
/***************************************************************/
/****************************************************************
* Additional EOFA operators only called outside the inverter.
* Since speed is not essential, simple axpby-style
* implementations should be fine.
***************************************************************/
template<class Impl>
void MobiusEOFAFermion<Impl>::Omega(const FermionField& psi, FermionField& Din, int sign, int dag)
{
@ -194,8 +194,8 @@ namespace QCD {
}
/********************************************************************
/* Performance critical fermion operators called inside the inverter
/********************************************************************/
* Performance critical fermion operators called inside the inverter
********************************************************************/
template<class Impl>
void MobiusEOFAFermion<Impl>::M5D(const FermionField& psi, FermionField& chi)

View File

@ -231,7 +231,7 @@ class ForceGradient : public Integrator<FieldImplementation, SmearingPolicy,
Field Pfg(U._grid);
Ufg = U;
Pfg = zero;
std::cout << GridLogMessage << "FG update " << fg_dt << " " << ep
std::cout << GridLogIntegrator << "FG update " << fg_dt << " " << ep
<< std::endl;
// prepare_fg; no prediction/result cache for now
// could relax CG stopping conditions for the

View File

@ -70,8 +70,8 @@ XmlReader::XmlReader(const char *xmlstring,string toplev) : fileName_("")
pugi::xml_parse_result result;
result = doc_.load_string(xmlstring);
if ( !result ) {
cerr << "XML error description: " << result.description() << "\n";
cerr << "XML error offset : " << result.offset << "\n";
cerr << "XML error description (from char *): " << result.description() << "\nXML\n"<< xmlstring << "\n";
cerr << "XML error offset (from char *) " << result.offset << "\nXML\n"<< xmlstring <<"\n";
abort();
}
if ( toplev == std::string("") ) {
@ -87,8 +87,8 @@ XmlReader::XmlReader(const string &fileName,string toplev) : fileName_(fileName)
pugi::xml_parse_result result;
result = doc_.load_file(fileName_.c_str());
if ( !result ) {
cerr << "XML error description: " << result.description() << "\n";
cerr << "XML error offset : " << result.offset << "\n";
cerr << "XML error description: " << result.description() <<" "<< fileName_ <<"\n";
cerr << "XML error offset : " << result.offset <<" "<< fileName_ <<"\n";
abort();
}
if ( toplev == std::string("") ) {

View File

@ -51,7 +51,9 @@ Author: paboyle <paboyle@ph.ed.ac.uk>
#define PARALLEL_CRITICAL
#endif
#define parallel_region PARALLEL_REGION
#define parallel_for PARALLEL_FOR_LOOP for
#define parallel_for_internal PARALLEL_FOR_LOOP_INTERN for
#define parallel_for_nest2 PARALLEL_NESTED_LOOP2 for
namespace Grid {

View File

@ -208,7 +208,7 @@ static int Grid_is_initialised = 0;
void Grid_init(int *argc,char ***argv)
{
GridLogger::StopWatch.Start();
GridLogger::GlobalStopWatch.Start();
std::string arg;
@ -243,6 +243,12 @@ void Grid_init(int *argc,char ***argv)
fname<<CartesianCommunicator::RankWorld();
fp=freopen(fname.str().c_str(),"w",stdout);
assert(fp!=(FILE *)NULL);
std::ostringstream ename;
ename<<"Grid.stderr.";
ename<<CartesianCommunicator::RankWorld();
fp=freopen(ename.str().c_str(),"w",stderr);
assert(fp!=(FILE *)NULL);
}
////////////////////////////////////

View File

@ -26,6 +26,25 @@ namespace Grid{
}
}
static inline void IndexFromCoorReversed (const std::vector<int>& coor,int &index,const std::vector<int> &dims){
int nd=dims.size();
int stride=1;
index=0;
for(int d=nd-1;d>=0;d--){
index = index+stride*coor[d];
stride=stride*dims[d];
}
}
static inline void CoorFromIndexReversed (std::vector<int>& coor,int index,const std::vector<int> &dims){
int nd= dims.size();
coor.resize(nd);
for(int d=nd-1;d>=0;d--){
coor[d] = index % dims[d];
index = index / dims[d];
}
}
};
}

View File

@ -1,4 +1,4 @@
SUBDIRS = . core forces hmc solver debug smearing IO
SUBDIRS = . core forces hmc solver debug smearing IO lanczos
if BUILD_CHROMA_REGRESSION
SUBDIRS+= qdpxx

View File

@ -37,8 +37,15 @@ RealD InverseApproximation(RealD x){
RealD SqrtApproximation(RealD x){
return std::sqrt(x);
}
RealD Approximation32(RealD x){
return std::pow(x,-1.0/32.0);
}
RealD Approximation2(RealD x){
return std::pow(x,-1.0/2.0);
}
RealD StepFunction(RealD x){
if ( x<0.1 ) return 1.0;
if ( x<10.0 ) return 1.0;
else return 0.0;
}
@ -56,7 +63,6 @@ int main (int argc, char ** argv)
Chebyshev<LatticeFermion> ChebyInv(lo,hi,2000,InverseApproximation);
{
std::ofstream of("chebyinv");
ChebyInv.csv(of);
@ -78,7 +84,6 @@ int main (int argc, char ** argv)
ChebyStep.JacksonSmooth();
{
std::ofstream of("chebystepjack");
ChebyStep.csv(of);
@ -100,5 +105,30 @@ int main (int argc, char ** argv)
ChebyNE.csv(of);
}
lo=0.0;
hi=4.0;
Chebyshev<LatticeFermion> Cheby32(lo,hi,2000,Approximation32);
{
std::ofstream of("cheby32");
Cheby32.csv(of);
}
Cheby32.JacksonSmooth();
{
std::ofstream of("cheby32jack");
Cheby32.csv(of);
}
Chebyshev<LatticeFermion> ChebySqrt(lo,hi,2000,Approximation2);
{
std::ofstream of("chebysqrt");
ChebySqrt.csv(of);
}
ChebySqrt.JacksonSmooth();
{
std::ofstream of("chebysqrtjack");
ChebySqrt.csv(of);
}
Grid_finalize();
}

View File

@ -38,11 +38,11 @@ int main (int argc, char ** argv)
std::cout<<GridLogMessage << "Testing Remez"<<std::endl;
double lo=0.01;
double hi=1.0;
double lo=1.0e-3;
double hi=5.0;
int precision=64;
int degree=10;
AlgRemez remez(0.001,1.0,precision);
int degree=16;
AlgRemez remez(lo,hi,precision);
////////////////////////////////////////
// sqrt and inverse sqrt
@ -50,21 +50,50 @@ int main (int argc, char ** argv)
std::cout<<GridLogMessage << "Generating degree "<<degree<<" for x^(1/2)"<<std::endl;
remez.generateApprox(degree,1,2);
MultiShiftFunction Sqrt(remez,1.0,false);
MultiShiftFunction InvSqrt(remez,1.0,true);
MultiShiftFunction Root2(remez,1.0,false);
MultiShiftFunction InvRoot2(remez,1.0,true);
std::cout<<GridLogMessage << "Generating degree "<<degree<<" for x^(1/4)"<<std::endl;
remez.generateApprox(degree,1,4);
MultiShiftFunction SqrtSqrt(remez,1.0,false);
MultiShiftFunction InvSqrtSqrt(remez,1.0,true);
MultiShiftFunction Root4(remez,1.0,false);
MultiShiftFunction InvRoot4(remez,1.0,true);
std::cout<<GridLogMessage << "Generating degree "<<degree<<" for x^(1/8)"<<std::endl;
remez.generateApprox(degree,1,8);
MultiShiftFunction Root8(remez,1.0,false);
MultiShiftFunction InvRoot8(remez,1.0,true);
std::cout<<GridLogMessage << "Generating degree "<<degree<<" for x^(1/16)"<<std::endl;
remez.generateApprox(degree,1,16);
MultiShiftFunction Root16(remez,1.0,false);
MultiShiftFunction InvRoot16(remez,1.0,true);
std::cout<<GridLogMessage << "Generating degree "<<degree<<" for x^(1/32)"<<std::endl;
remez.generateApprox(degree,1,32);
MultiShiftFunction Root32(remez,1.0,false);
MultiShiftFunction InvRoot32(remez,1.0,true);
ofstream gnuplot(std::string("Sqrt.gnu"),std::ios::out|std::ios::trunc);
Sqrt.gnuplot(gnuplot);
ofstream gnuplot(std::string("Root2.gnu"),std::ios::out|std::ios::trunc);
Root2.gnuplot(gnuplot);
ofstream gnuplot_i2(std::string("InvRoot2.gnu"),std::ios::out|std::ios::trunc);
InvRoot2.gnuplot(gnuplot_i2);
ofstream gnuplot_i4(std::string("InvRoot4.gnu"),std::ios::out|std::ios::trunc);
InvRoot4.gnuplot(gnuplot_i4);
ofstream gnuplot_i8(std::string("InvRoot8.gnu"),std::ios::out|std::ios::trunc);
InvRoot8.gnuplot(gnuplot_i8);
ofstream gnuplot_i16(std::string("InvRoot16.gnu"),std::ios::out|std::ios::trunc);
InvRoot16.gnuplot(gnuplot_i16);
ofstream gnuplot_i32(std::string("InvRoot32.gnu"),std::ios::out|std::ios::trunc);
InvRoot32.gnuplot(gnuplot_i32);
ofstream gnuplot_inv(std::string("InvSqrt.gnu"),std::ios::out|std::ios::trunc);
InvSqrt.gnuplot(gnuplot);
double x=0.6789;
double sx=std::sqrt(x);
@ -72,10 +101,10 @@ int main (int argc, char ** argv)
double isx=1.0/sx;
double issx=1.0/ssx;
double asx =Sqrt.approx(x);
double assx =SqrtSqrt.approx(x);
double aisx =InvSqrt.approx(x);
double aissx=InvSqrtSqrt.approx(x);
double asx =Root2.approx(x);
double assx =Root4.approx(x);
double aisx =InvRoot2.approx(x);
double aissx=InvRoot4.approx(x);
std::cout<<GridLogMessage << "x^(1/2) : "<<sx<<" "<<asx<<std::endl;
std::cout<<GridLogMessage << "x^(1/4) : "<<ssx<<" "<<assx<<std::endl;

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@ -0,0 +1,143 @@
namespace Grid {
/*
BlockProjector
If _HP_BLOCK_PROJECTORS_ is defined, we assume that _evec is a basis that is not
fully orthonormalized (to the precision of the coarse field) and we allow for higher-precision
coarse field than basis field.
*/
//#define _HP_BLOCK_PROJECTORS_
template<typename Field>
class BlockProjector {
public:
BasisFieldVector<Field>& _evec;
BlockedGrid<Field>& _bgrid;
BlockProjector(BasisFieldVector<Field>& evec, BlockedGrid<Field>& bgrid) : _evec(evec), _bgrid(bgrid) {
}
void createOrthonormalBasis(RealD thres = 0.0) {
GridStopWatch sw;
sw.Start();
int cnt = 0;
#pragma omp parallel shared(cnt)
{
int lcnt = 0;
#pragma omp for
for (int b=0;b<_bgrid._o_blocks;b++) {
for (int i=0;i<_evec._Nm;i++) {
auto nrm0 = _bgrid.block_sp(b,_evec._v[i],_evec._v[i]);
// |i> -= <j|i> |j>
for (int j=0;j<i;j++) {
_bgrid.block_caxpy(b,_evec._v[i],-_bgrid.block_sp(b,_evec._v[j],_evec._v[i]),_evec._v[j],_evec._v[i]);
}
auto nrm = _bgrid.block_sp(b,_evec._v[i],_evec._v[i]);
auto eps = nrm/nrm0;
if (Reduce(eps).real() < thres) {
lcnt++;
}
// TODO: if norm is too small, remove this eigenvector/mark as not needed; in practice: set it to zero norm here and return a mask
// that is then used later to decide not to write certain eigenvectors to disk (add a norm calculation before subtraction step and look at nrm/nrm0 < eps to decide)
_bgrid.block_cscale(b,1.0 / sqrt(nrm),_evec._v[i]);
}
}
#pragma omp critical
{
cnt += lcnt;
}
}
sw.Stop();
std::cout << GridLogMessage << "Gram-Schmidt to create blocked basis took " << sw.Elapsed() << " (" << ((RealD)cnt / (RealD)_bgrid._o_blocks / (RealD)_evec._Nm)
<< " below threshold)" << std::endl;
}
template<typename CoarseField>
void coarseToFine(const CoarseField& in, Field& out) {
out = zero;
out.checkerboard = _evec._v[0].checkerboard;
int Nbasis = sizeof(in._odata[0]._internal._internal) / sizeof(in._odata[0]._internal._internal[0]);
assert(Nbasis == _evec._Nm);
#pragma omp parallel for
for (int b=0;b<_bgrid._o_blocks;b++) {
for (int j=0;j<_evec._Nm;j++) {
_bgrid.block_caxpy(b,out,in._odata[b]._internal._internal[j],_evec._v[j],out);
}
}
}
template<typename CoarseField>
void fineToCoarse(const Field& in, CoarseField& out) {
out = zero;
int Nbasis = sizeof(out._odata[0]._internal._internal) / sizeof(out._odata[0]._internal._internal[0]);
assert(Nbasis == _evec._Nm);
Field tmp(_bgrid._grid);
tmp = in;
#pragma omp parallel for
for (int b=0;b<_bgrid._o_blocks;b++) {
for (int j=0;j<_evec._Nm;j++) {
// |rhs> -= <j|rhs> |j>
auto c = _bgrid.block_sp(b,_evec._v[j],tmp);
_bgrid.block_caxpy(b,tmp,-c,_evec._v[j],tmp); // may make this more numerically stable
out._odata[b]._internal._internal[j] = c;
}
}
}
template<typename CoarseField>
void deflateFine(BasisFieldVector<CoarseField>& _coef,const std::vector<RealD>& eval,int N,const Field& src_orig,Field& result) {
result = zero;
for (int i=0;i<N;i++) {
Field tmp(result._grid);
coarseToFine(_coef._v[i],tmp);
axpy(result,TensorRemove(innerProduct(tmp,src_orig)) / eval[i],tmp,result);
}
}
template<typename CoarseField>
void deflateCoarse(BasisFieldVector<CoarseField>& _coef,const std::vector<RealD>& eval,int N,const Field& src_orig,Field& result) {
CoarseField src_coarse(_coef._v[0]._grid);
CoarseField result_coarse = src_coarse;
result_coarse = zero;
fineToCoarse(src_orig,src_coarse);
for (int i=0;i<N;i++) {
axpy(result_coarse,TensorRemove(innerProduct(_coef._v[i],src_coarse)) / eval[i],_coef._v[i],result_coarse);
}
coarseToFine(result_coarse,result);
}
template<typename CoarseField>
void deflate(BasisFieldVector<CoarseField>& _coef,const std::vector<RealD>& eval,int N,const Field& src_orig,Field& result) {
// Deflation on coarse Grid is much faster, so use it by default. Deflation on fine Grid is kept for legacy reasons for now.
deflateCoarse(_coef,eval,N,src_orig,result);
}
};
}

401
tests/lanczos/BlockedGrid.h Normal file
View File

@ -0,0 +1,401 @@
namespace Grid {
template<typename Field>
class BlockedGrid {
public:
GridBase* _grid;
typedef typename Field::scalar_type Coeff_t;
typedef typename Field::vector_type vCoeff_t;
std::vector<int> _bs; // block size
std::vector<int> _nb; // number of blocks
std::vector<int> _l; // local dimensions irrespective of cb
std::vector<int> _l_cb; // local dimensions of checkerboarded vector
std::vector<int> _l_cb_o; // local dimensions of inner checkerboarded vector
std::vector<int> _bs_cb; // block size in checkerboarded vector
std::vector<int> _nb_o; // number of blocks of simd o-sites
int _nd, _blocks, _cf_size, _cf_block_size, _cf_o_block_size, _o_blocks, _block_sites;
BlockedGrid(GridBase* grid, const std::vector<int>& block_size) :
_grid(grid), _bs(block_size), _nd((int)_bs.size()),
_nb(block_size), _l(block_size), _l_cb(block_size), _nb_o(block_size),
_l_cb_o(block_size), _bs_cb(block_size) {
_blocks = 1;
_o_blocks = 1;
_l = grid->FullDimensions();
_l_cb = grid->LocalDimensions();
_l_cb_o = grid->_rdimensions;
_cf_size = 1;
_block_sites = 1;
for (int i=0;i<_nd;i++) {
_l[i] /= grid->_processors[i];
assert(!(_l[i] % _bs[i])); // lattice must accommodate choice of blocksize
int r = _l[i] / _l_cb[i];
assert(!(_bs[i] % r)); // checkerboarding must accommodate choice of blocksize
_bs_cb[i] = _bs[i] / r;
_block_sites *= _bs_cb[i];
_nb[i] = _l[i] / _bs[i];
_nb_o[i] = _nb[i] / _grid->_simd_layout[i];
if (_nb[i] % _grid->_simd_layout[i]) { // simd must accommodate choice of blocksize
std::cout << GridLogMessage << "Problem: _nb[" << i << "] = " << _nb[i] << " _grid->_simd_layout[" << i << "] = " << _grid->_simd_layout[i] << std::endl;
assert(0);
}
_blocks *= _nb[i];
_o_blocks *= _nb_o[i];
_cf_size *= _l[i];
}
_cf_size *= 12 / 2;
_cf_block_size = _cf_size / _blocks;
_cf_o_block_size = _cf_size / _o_blocks;
std::cout << GridLogMessage << "BlockedGrid:" << std::endl;
std::cout << GridLogMessage << " _l = " << _l << std::endl;
std::cout << GridLogMessage << " _l_cb = " << _l_cb << std::endl;
std::cout << GridLogMessage << " _l_cb_o = " << _l_cb_o << std::endl;
std::cout << GridLogMessage << " _bs = " << _bs << std::endl;
std::cout << GridLogMessage << " _bs_cb = " << _bs_cb << std::endl;
std::cout << GridLogMessage << " _nb = " << _nb << std::endl;
std::cout << GridLogMessage << " _nb_o = " << _nb_o << std::endl;
std::cout << GridLogMessage << " _blocks = " << _blocks << std::endl;
std::cout << GridLogMessage << " _o_blocks = " << _o_blocks << std::endl;
std::cout << GridLogMessage << " sizeof(vCoeff_t) = " << sizeof(vCoeff_t) << std::endl;
std::cout << GridLogMessage << " _cf_size = " << _cf_size << std::endl;
std::cout << GridLogMessage << " _cf_block_size = " << _cf_block_size << std::endl;
std::cout << GridLogMessage << " _block_sites = " << _block_sites << std::endl;
std::cout << GridLogMessage << " _grid->oSites() = " << _grid->oSites() << std::endl;
// _grid->Barrier();
//abort();
}
void block_to_coor(int b, std::vector<int>& x0) {
std::vector<int> bcoor;
bcoor.resize(_nd);
x0.resize(_nd);
assert(b < _o_blocks);
Lexicographic::CoorFromIndex(bcoor,b,_nb_o);
int i;
for (i=0;i<_nd;i++) {
x0[i] = bcoor[i]*_bs_cb[i];
}
//std::cout << GridLogMessage << "Map block b -> " << x0 << std::endl;
}
void block_site_to_o_coor(const std::vector<int>& x0, std::vector<int>& coor, int i) {
Lexicographic::CoorFromIndex(coor,i,_bs_cb);
for (int j=0;j<_nd;j++)
coor[j] += x0[j];
}
int block_site_to_o_site(const std::vector<int>& x0, int i) {
std::vector<int> coor; coor.resize(_nd);
block_site_to_o_coor(x0,coor,i);
Lexicographic::IndexFromCoor(coor,i,_l_cb_o);
return i;
}
vCoeff_t block_sp(int b, const Field& x, const Field& y) {
std::vector<int> x0;
block_to_coor(b,x0);
vCoeff_t ret = 0.0;
for (int i=0;i<_block_sites;i++) { // only odd sites
int ss = block_site_to_o_site(x0,i);
ret += TensorRemove(innerProduct(x._odata[ss],y._odata[ss]));
}
return ret;
}
vCoeff_t block_sp(int b, const Field& x, const std::vector< ComplexD >& y) {
std::vector<int> x0;
block_to_coor(b,x0);
constexpr int nsimd = sizeof(vCoeff_t) / sizeof(Coeff_t);
int lsize = _cf_o_block_size / _block_sites;
std::vector< ComplexD > ret(nsimd);
for (int i=0;i<nsimd;i++)
ret[i] = 0.0;
for (int i=0;i<_block_sites;i++) { // only odd sites
int ss = block_site_to_o_site(x0,i);
int n = lsize / nsimd;
for (int l=0;l<n;l++) {
for (int j=0;j<nsimd;j++) {
int t = lsize * i + l*nsimd + j;
ret[j] += conjugate(((Coeff_t*)&x._odata[ss]._internal)[l*nsimd + j]) * y[t];
}
}
}
vCoeff_t vret;
for (int i=0;i<nsimd;i++)
((Coeff_t*)&vret)[i] = (Coeff_t)ret[i];
return vret;
}
template<class T>
void vcaxpy(iScalar<T>& r,const vCoeff_t& a,const iScalar<T>& x,const iScalar<T>& y) {
vcaxpy(r._internal,a,x._internal,y._internal);
}
template<class T,int N>
void vcaxpy(iVector<T,N>& r,const vCoeff_t& a,const iVector<T,N>& x,const iVector<T,N>& y) {
for (int i=0;i<N;i++)
vcaxpy(r._internal[i],a,x._internal[i],y._internal[i]);
}
void vcaxpy(vCoeff_t& r,const vCoeff_t& a,const vCoeff_t& x,const vCoeff_t& y) {
r = a*x + y;
}
void block_caxpy(int b, Field& ret, const vCoeff_t& a, const Field& x, const Field& y) {
std::vector<int> x0;
block_to_coor(b,x0);
for (int i=0;i<_block_sites;i++) { // only odd sites
int ss = block_site_to_o_site(x0,i);
vcaxpy(ret._odata[ss],a,x._odata[ss],y._odata[ss]);
}
}
void block_caxpy(int b, std::vector< ComplexD >& ret, const vCoeff_t& a, const Field& x, const std::vector< ComplexD >& y) {
std::vector<int> x0;
block_to_coor(b,x0);
constexpr int nsimd = sizeof(vCoeff_t) / sizeof(Coeff_t);
int lsize = _cf_o_block_size / _block_sites;
for (int i=0;i<_block_sites;i++) { // only odd sites
int ss = block_site_to_o_site(x0,i);
int n = lsize / nsimd;
for (int l=0;l<n;l++) {
vCoeff_t r = a* ((vCoeff_t*)&x._odata[ss]._internal)[l];
for (int j=0;j<nsimd;j++) {
int t = lsize * i + l*nsimd + j;
ret[t] = y[t] + ((Coeff_t*)&r)[j];
}
}
}
}
void block_set(int b, Field& ret, const std::vector< ComplexD >& x) {
std::vector<int> x0;
block_to_coor(b,x0);
int lsize = _cf_o_block_size / _block_sites;
for (int i=0;i<_block_sites;i++) { // only odd sites
int ss = block_site_to_o_site(x0,i);
for (int l=0;l<lsize;l++)
((Coeff_t*)&ret._odata[ss]._internal)[l] = (Coeff_t)x[lsize * i + l]; // convert precision
}
}
void block_get(int b, const Field& ret, std::vector< ComplexD >& x) {
std::vector<int> x0;
block_to_coor(b,x0);
int lsize = _cf_o_block_size / _block_sites;
for (int i=0;i<_block_sites;i++) { // only odd sites
int ss = block_site_to_o_site(x0,i);
for (int l=0;l<lsize;l++)
x[lsize * i + l] = (ComplexD)((Coeff_t*)&ret._odata[ss]._internal)[l];
}
}
template<class T>
void vcscale(iScalar<T>& r,const vCoeff_t& a,const iScalar<T>& x) {
vcscale(r._internal,a,x._internal);
}
template<class T,int N>
void vcscale(iVector<T,N>& r,const vCoeff_t& a,const iVector<T,N>& x) {
for (int i=0;i<N;i++)
vcscale(r._internal[i],a,x._internal[i]);
}
void vcscale(vCoeff_t& r,const vCoeff_t& a,const vCoeff_t& x) {
r = a*x;
}
void block_cscale(int b, const vCoeff_t& a, Field& ret) {
std::vector<int> x0;
block_to_coor(b,x0);
for (int i=0;i<_block_sites;i++) { // only odd sites
int ss = block_site_to_o_site(x0,i);
vcscale(ret._odata[ss],a,ret._odata[ss]);
}
}
void getCanonicalBlockOffset(int cb, std::vector<int>& x0) {
const int ndim = 5;
assert(_nb.size() == ndim);
std::vector<int> _nbc = { _nb[1], _nb[2], _nb[3], _nb[4], _nb[0] };
std::vector<int> _bsc = { _bs[1], _bs[2], _bs[3], _bs[4], _bs[0] };
x0.resize(ndim);
assert(cb >= 0);
assert(cb < _nbc[0]*_nbc[1]*_nbc[2]*_nbc[3]*_nbc[4]);
Lexicographic::CoorFromIndex(x0,cb,_nbc);
int i;
for (i=0;i<ndim;i++) {
x0[i] *= _bsc[i];
}
//if (cb < 2)
// std::cout << GridLogMessage << "Map: " << cb << " To: " << x0 << std::endl;
}
void pokeBlockOfVectorCanonical(int cb,Field& v,const std::vector<float>& buf) {
std::vector<int> _bsc = { _bs[1], _bs[2], _bs[3], _bs[4], _bs[0] };
std::vector<int> ldim = v._grid->LocalDimensions();
std::vector<int> cldim = { ldim[1], ldim[2], ldim[3], ldim[4], ldim[0] };
const int _nbsc = _bs_cb[0]*_bs_cb[1]*_bs_cb[2]*_bs_cb[3]*_bs_cb[4];
// take canonical block cb of v and put it in canonical ordering in buf
std::vector<int> cx0;
getCanonicalBlockOffset(cb,cx0);
#pragma omp parallel
{
std::vector<int> co0,cl0;
co0=cx0; cl0=cx0;
#pragma omp for
for (int i=0;i<_nbsc;i++) {
Lexicographic::CoorFromIndex(co0,2*i,_bsc); // 2* for eo
for (int j=0;j<(int)_bsc.size();j++)
cl0[j] = cx0[j] + co0[j];
std::vector<int> l0 = { cl0[4], cl0[0], cl0[1], cl0[2], cl0[3] };
int oi = v._grid->oIndex(l0);
int ii = v._grid->iIndex(l0);
int lti = i;
//if (cb < 2 && i<2)
// std::cout << GridLogMessage << "Map: " << cb << ", " << i << " To: " << cl0 << ", " << cx0 << ", " << oi << ", " << ii << std::endl;
for (int s=0;s<4;s++)
for (int c=0;c<3;c++) {
Coeff_t& ld = ((Coeff_t*)&v._odata[oi]._internal._internal[s]._internal[c])[ii];
int ti = 12*lti + 3*s + c;
ld = Coeff_t(buf[2*ti+0], buf[2*ti+1]);
}
}
}
}
void peekBlockOfVectorCanonical(int cb,const Field& v,std::vector<float>& buf) {
std::vector<int> _bsc = { _bs[1], _bs[2], _bs[3], _bs[4], _bs[0] };
std::vector<int> ldim = v._grid->LocalDimensions();
std::vector<int> cldim = { ldim[1], ldim[2], ldim[3], ldim[4], ldim[0] };
const int _nbsc = _bs_cb[0]*_bs_cb[1]*_bs_cb[2]*_bs_cb[3]*_bs_cb[4];
// take canonical block cb of v and put it in canonical ordering in buf
std::vector<int> cx0;
getCanonicalBlockOffset(cb,cx0);
buf.resize(_cf_block_size * 2);
#pragma omp parallel
{
std::vector<int> co0,cl0;
co0=cx0; cl0=cx0;
#pragma omp for
for (int i=0;i<_nbsc;i++) {
Lexicographic::CoorFromIndex(co0,2*i,_bsc); // 2* for eo
for (int j=0;j<(int)_bsc.size();j++)
cl0[j] = cx0[j] + co0[j];
std::vector<int> l0 = { cl0[4], cl0[0], cl0[1], cl0[2], cl0[3] };
int oi = v._grid->oIndex(l0);
int ii = v._grid->iIndex(l0);
int lti = i;
//if (cb < 2 && i<2)
// std::cout << GridLogMessage << "Map: " << cb << ", " << i << " To: " << cl0 << ", " << cx0 << ", " << oi << ", " << ii << std::endl;
for (int s=0;s<4;s++)
for (int c=0;c<3;c++) {
Coeff_t& ld = ((Coeff_t*)&v._odata[oi]._internal._internal[s]._internal[c])[ii];
int ti = 12*lti + 3*s + c;
buf[2*ti+0] = ld.real();
buf[2*ti+1] = ld.imag();
}
}
}
}
int globalToLocalCanonicalBlock(int slot,const std::vector<int>& src_nodes,int nb) {
// processor coordinate
int _nd = (int)src_nodes.size();
std::vector<int> _src_nodes = src_nodes;
std::vector<int> pco(_nd);
Lexicographic::CoorFromIndex(pco,slot,_src_nodes);
std::vector<int> cpco = { pco[1], pco[2], pco[3], pco[4], pco[0] };
// get local block
std::vector<int> _nbc = { _nb[1], _nb[2], _nb[3], _nb[4], _nb[0] };
assert(_nd == 5);
std::vector<int> c_src_local_blocks(_nd);
for (int i=0;i<_nd;i++) {
assert(_grid->_fdimensions[i] % (src_nodes[i] * _bs[i]) == 0);
c_src_local_blocks[(i+4) % 5] = _grid->_fdimensions[i] / src_nodes[i] / _bs[i];
}
std::vector<int> cbcoor(_nd); // coordinate of block in slot in canonical form
Lexicographic::CoorFromIndex(cbcoor,nb,c_src_local_blocks);
// cpco, cbcoor
std::vector<int> clbcoor(_nd);
for (int i=0;i<_nd;i++) {
int cgcoor = cpco[i] * c_src_local_blocks[i] + cbcoor[i]; // global block coordinate
int pcoor = cgcoor / _nbc[i]; // processor coordinate in my Grid
int tpcoor = _grid->_processor_coor[(i+1)%5];
if (pcoor != tpcoor)
return -1;
clbcoor[i] = cgcoor - tpcoor * _nbc[i]; // canonical local block coordinate for canonical dimension i
}
int lnb;
Lexicographic::IndexFromCoor(clbcoor,lnb,_nbc);
//std::cout << "Mapped slot = " << slot << " nb = " << nb << " to " << lnb << std::endl;
return lnb;
}
};
}

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namespace Grid {
template<class Field>
class BasisFieldVector {
public:
int _Nm;
typedef typename Field::scalar_type Coeff_t;
typedef typename Field::vector_type vCoeff_t;
typedef typename Field::vector_object vobj;
typedef typename vobj::scalar_object sobj;
std::vector<Field> _v; // _Nfull vectors
void report(int n,GridBase* value) {
std::cout << GridLogMessage << "BasisFieldVector allocated:\n";
std::cout << GridLogMessage << " Delta N = " << n << "\n";
std::cout << GridLogMessage << " Size of full vectors (size) = " <<
((double)n*sizeof(vobj)*value->oSites() / 1024./1024./1024.) << " GB\n";
std::cout << GridLogMessage << " Size = " << _v.size() << " Capacity = " << _v.capacity() << std::endl;
value->Barrier();
#ifdef __linux
if (value->IsBoss()) {
system("cat /proc/meminfo");
}
#endif
value->Barrier();
}
BasisFieldVector(int Nm,GridBase* value) : _Nm(Nm), _v(Nm,value) {
report(Nm,value);
}
~BasisFieldVector() {
}
Field& operator[](int i) {
return _v[i];
}
void orthogonalize(Field& w, int k) {
basisOrthogonalize(_v,w,k);
}
void rotate(Eigen::MatrixXd& Qt,int j0, int j1, int k0,int k1,int Nm) {
basisRotate(_v,Qt,j0,j1,k0,k1,Nm);
}
size_t size() const {
return _Nm;
}
void resize(int n) {
if (n > _Nm)
_v.reserve(n);
_v.resize(n,_v[0]._grid);
if (n < _Nm)
_v.shrink_to_fit();
report(n - _Nm,_v[0]._grid);
_Nm = n;
}
void sortInPlace(std::vector<RealD>& sort_vals, bool reverse) {
basisSortInPlace(_v,sort_vals,reverse);
}
void deflate(const std::vector<RealD>& eval,const Field& src_orig,Field& result) {
basisDeflate(_v,eval,src_orig,result);
}
};
}

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include Make.inc

136
tests/lanczos/Params.h Normal file
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/*
Params IO
Author: Christoph Lehner
Date: 2017
*/
#define PADD(p,X) p.get(#X,X);
class Params {
protected:
std::string trim(const std::string& sc) {
std::string s = sc;
s.erase(s.begin(), std::find_if(s.begin(), s.end(),
std::not1(std::ptr_fun<int, int>(std::isspace))));
s.erase(std::find_if(s.rbegin(), s.rend(),
std::not1(std::ptr_fun<int, int>(std::isspace))).base(), s.end());
return s;
}
public:
std::map< std::string, std::string > lines;
std::string _fn;
Params(const char* fn) : _fn(fn) {
FILE* f = fopen(fn,"rt");
assert(f);
while (!feof(f)) {
char buf[4096];
if (fgets(buf,sizeof(buf),f)) {
if (buf[0] != '#' && buf[0] != '\r' && buf[0] != '\n') {
char* sep = strchr(buf,'=');
assert(sep);
*sep = '\0';
lines[trim(buf)] = trim(sep+1);
}
}
}
fclose(f);
}
~Params() {
}
std::string loghead() {
return _fn + ": ";
}
bool has(const char* name) {
auto f = lines.find(name);
return (f != lines.end());
}
const std::string& get(const char* name) {
auto f = lines.find(name);
if (f == lines.end()) {
std::cout << Grid::GridLogMessage << loghead() << "Could not find value for " << name << std::endl;
abort();
}
return f->second;
}
void parse(std::string& s, const std::string& cval) {
std::stringstream trimmer;
trimmer << cval;
s.clear();
trimmer >> s;
}
void parse(int& i, const std::string& cval) {
assert(sscanf(cval.c_str(),"%d",&i)==1);
}
void parse(long long& i, const std::string& cval) {
assert(sscanf(cval.c_str(),"%lld",&i)==1);
}
void parse(double& f, const std::string& cval) {
assert(sscanf(cval.c_str(),"%lf",&f)==1);
}
void parse(float& f, const std::string& cval) {
assert(sscanf(cval.c_str(),"%f",&f)==1);
}
void parse(bool& b, const std::string& cval) {
std::string lcval = cval;
std::transform(lcval.begin(), lcval.end(), lcval.begin(), ::tolower);
if (lcval == "true" || lcval == "yes") {
b = true;
} else if (lcval == "false" || lcval == "no") {
b = false;
} else {
std::cout << "Invalid value for boolean: " << b << std::endl;
assert(0);
}
}
void parse(std::complex<double>& f, const std::string& cval) {
double r,i;
assert(sscanf(cval.c_str(),"%lf %lf",&r,&i)==2);
f = std::complex<double>(r,i);
}
void parse(std::complex<float>& f, const std::string& cval) {
float r,i;
assert(sscanf(cval.c_str(),"%f %f",&r,&i)==2);
f = std::complex<float>(r,i);
}
template<class T>
void get(const char* name, std::vector<T>& v) {
int i = 0;
v.resize(0);
while (true) {
char buf[4096];
sprintf(buf,"%s[%d]",name,i++);
if (!has(buf))
break;
T val;
parse(val,get(buf));
std::cout << Grid::GridLogMessage << loghead() << "Set " << buf << " to " << val << std::endl;
v.push_back(val);
}
}
template<class T>
void get(const char* name, T& f) {
parse(f,get(name));
std::cout << Grid::GridLogMessage << loghead() << "Set " << name << " to " << f << std::endl;
}
};

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/*
Authors: Christoph Lehner
Date: 2017
Multigrid Lanczos
TODO:
High priority:
- Explore filtering of starting vector again, should really work: If cheby has 4 for low mode region and 1 for high mode, applying 15 iterations has 1e9 suppression
of high modes, which should create the desired invariant subspace already? Missing something here??? Maybe dynamic range dangerous, i.e., could also kill interesting
eigenrange if not careful.
Better: Use all Cheby up to order N in order to approximate a step function; try this! Problem: width of step function. Can kill eigenspace > 1e-3 and have < 1e-5 equal
to 1
Low priority:
- Given that I seem to need many restarts and high degree poly to create the base and this takes about 1 day, seriously consider a simple method to create a basis
(ortho krylov low poly); and then fix up lowest say 200 eigenvalues by 1 run with high-degree poly (600 could be enough)
*/
#include <Grid/Grid.h>
#include <Grid/algorithms/iterative/ImplicitlyRestartedLanczos.h>
/////////////////////////////////////////////////////////////////////////////
// The following are now decoupled from the Lanczos and deal with grids.
// Safe to replace functionality
/////////////////////////////////////////////////////////////////////////////
#include "BlockedGrid.h"
#include "FieldBasisVector.h"
#include "BlockProjector.h"
#include "FieldVectorIO.h"
#include "Params.h"
using namespace std;
using namespace Grid;
using namespace Grid::QCD;
bool read_evals(GridBase* _grid, char* fn, std::vector<RealD>& evals) {
FILE* f = 0;
uint32_t status = 0;
if (_grid->IsBoss()) {
f = fopen(fn,"rt");
status = f ? 1 : 0;
}
_grid->GlobalSum(status);
if (!status)
return false;
uint32_t N;
if (f)
assert(fscanf(f,"%d\n",&N)==1);
else
N = 0;
_grid->GlobalSum(N);
std::cout << "Reading " << N << " eigenvalues" << std::endl;
evals.resize(N);
for (int i=0;i<N;i++) {
if (f)
assert(fscanf(f,"%lf",&evals[i])==1);
else
evals[i] = 0;
}
_grid->GlobalSumVector(&evals[0],evals.size());
if (f)
fclose(f);
return true;
}
void write_evals(char* fn, std::vector<RealD>& evals) {
FILE* f = fopen(fn,"wt");
assert(f);
int N = (int)evals.size();
fprintf(f,"%d\n",N);
for (int i=0;i<N;i++) {
fprintf(f,"%.15E\n",evals[i]);
}
fclose(f);
}
void write_history(char* fn, std::vector<RealD>& hist) {
FILE* f = fopen(fn,"wt");
assert(f);
int N = (int)hist.size();
for (int i=0;i<N;i++) {
fprintf(f,"%d %.15E\n",i,hist[i]);
}
fclose(f);
}
template<typename Field>
class CheckpointedLinearFunction : public LinearFunction<Field> {
public:
LinearFunction<Field>& _op;
std::string _dir;
int _max_apply;
int _apply, _apply_actual;
GridBase* _grid;
FILE* _f;
CheckpointedLinearFunction(GridBase* grid, LinearFunction<Field>& op, const char* dir,int max_apply) : _op(op), _dir(dir), _grid(grid), _f(0),
_max_apply(max_apply), _apply(0), _apply_actual(0) {
FieldVectorIO::conditionalMkDir(dir);
char fn[4096];
sprintf(fn,"%s/ckpt_op.%4.4d",_dir.c_str(),_grid->ThisRank());
printf("CheckpointLinearFunction:: file %s\n",fn);
_f = fopen(fn,"r+b");
if (!_f)
_f = fopen(fn,"w+b");
assert(_f);
fseek(_f,0,SEEK_CUR);
}
~CheckpointedLinearFunction() {
if (_f) {
fclose(_f);
_f = 0;
}
}
bool load_ckpt(const Field& in, Field& out) {
off_t cur = ftello(_f);
fseeko(_f,0,SEEK_END);
if (cur == ftello(_f))
return false;
fseeko(_f,cur,SEEK_SET);
size_t sz = sizeof(out._odata[0]) * out._odata.size();
GridStopWatch gsw;
gsw.Start();
uint32_t crc_exp;
assert(fread(&crc_exp,4,1,_f)==1);
assert(fread(&out._odata[0],sz,1,_f)==1);
assert(FieldVectorIO::crc32_threaded((unsigned char*)&out._odata[0],sz,0x0)==crc_exp);
gsw.Stop();
printf("CheckpointLinearFunction:: reading %lld\n",(long long)sz);
std::cout << GridLogMessage << "Loading " << ((RealD)sz/1024./1024./1024.) << " GB in " << gsw.Elapsed() << std::endl;
return true;
}
void save_ckpt(const Field& in, Field& out) {
fseek(_f,0,SEEK_CUR); // switch to write
size_t sz = sizeof(out._odata[0]) * out._odata.size();
GridStopWatch gsw;
gsw.Start();
uint32_t crc = FieldVectorIO::crc32_threaded((unsigned char*)&out._odata[0],sz,0x0);
assert(fwrite(&crc,4,1,_f)==1);
assert(fwrite(&out._odata[0],sz,1,_f)==1);
fflush(_f); // try this on the GPFS to suppress OPA usage for disk during dslash; this is not needed at Lustre/JLAB
gsw.Stop();
printf("CheckpointLinearFunction:: writing %lld\n",(long long)sz);
std::cout << GridLogMessage << "Saving " << ((RealD)sz/1024./1024./1024.) << " GB in " << gsw.Elapsed() << std::endl;
}
void operator()(const Field& in, Field& out) {
_apply++;
if (load_ckpt(in,out))
return;
_op(in,out);
save_ckpt(in,out);
if (_apply_actual++ >= _max_apply) {
std::cout << GridLogMessage << "Maximum application of operator reached, checkpoint and finish in future job" << std::endl;
if (_f) { fclose(_f); _f=0; }
in._grid->Barrier();
Grid_finalize();
exit(3);
}
}
};
template<typename CoarseField,typename Field>
class ProjectedFunctionHermOp : public LinearFunction<CoarseField> {
public:
OperatorFunction<Field> & _poly;
LinearOperatorBase<Field> &_Linop;
BlockProjector<Field>& _pr;
ProjectedFunctionHermOp(BlockProjector<Field>& pr,OperatorFunction<Field> & poly,LinearOperatorBase<Field>& linop) : _poly(poly), _Linop(linop), _pr(pr) {
}
void operator()(const CoarseField& in, CoarseField& out) {
assert(_pr._bgrid._o_blocks == in._grid->oSites());
Field fin(_pr._bgrid._grid);
Field fout(_pr._bgrid._grid);
GridStopWatch gsw1,gsw2,gsw3;
// fill fin
gsw1.Start();
_pr.coarseToFine(in,fin);
gsw1.Stop();
// apply poly
gsw2.Start();
_poly(_Linop,fin,fout);
gsw2.Stop();
// fill out
gsw3.Start();
_pr.fineToCoarse(fout,out);
gsw3.Stop();
auto eps = innerProduct(in,out);
std::cout << GridLogMessage << "Operator timing details: c2f = " << gsw1.Elapsed() << " poly = " << gsw2.Elapsed() << " f2c = " << gsw3.Elapsed() <<
" Complimentary Hermiticity check: " << eps.imag() / std::abs(eps) << std::endl;
}
};
template<typename CoarseField,typename Field>
class ProjectedHermOp : public LinearFunction<CoarseField> {
public:
LinearOperatorBase<Field> &_Linop;
BlockProjector<Field>& _pr;
ProjectedHermOp(BlockProjector<Field>& pr,LinearOperatorBase<Field>& linop) : _Linop(linop), _pr(pr) {
}
void operator()(const CoarseField& in, CoarseField& out) {
assert(_pr._bgrid._o_blocks == in._grid->oSites());
Field fin(_pr._bgrid._grid);
Field fout(_pr._bgrid._grid);
_pr.coarseToFine(in,fin);
_Linop.HermOp(fin,fout);
_pr.fineToCoarse(fout,out);
}
};
template<typename vtype, int N > using CoarseSiteFieldGeneral = iScalar< iVector<vtype, N> >;
template<int N> using CoarseSiteFieldD = CoarseSiteFieldGeneral< vComplexD, N >;
template<int N> using CoarseSiteFieldF = CoarseSiteFieldGeneral< vComplexF, N >;
template<int N> using CoarseSiteField = CoarseSiteFieldGeneral< vComplex, N >;
template<int N> using CoarseLatticeFermion = Lattice< CoarseSiteField<N> >;
template<int N> using CoarseLatticeFermionD = Lattice< CoarseSiteFieldD<N> >;
template<typename Field,int Nstop1>
void CoarseGridLanczos(BlockProjector<Field>& pr,RealD alpha2,RealD beta,int Npoly2,
int Nstop2,int Nk2,int Nm2,RealD resid2,RealD betastp2,int MaxIt,int MinRes2,
LinearOperatorBase<Field>& HermOp, std::vector<RealD>& eval1, bool cg_test_enabled,
int cg_test_maxiter,int nsingle,int SkipTest2, int MaxApply2,bool smoothed_eval_enabled,
int smoothed_eval_inner,int smoothed_eval_outer,int smoothed_eval_begin,
int smoothed_eval_end,RealD smoothed_eval_inner_resid) {
BlockedGrid<Field>& bgrid = pr._bgrid;
BasisFieldVector<Field>& basis = pr._evec;
std::vector<int> coarseFourDimLatt;
for (int i=0;i<4;i++)
coarseFourDimLatt.push_back(bgrid._nb[1+i] * bgrid._grid->_processors[1+i]);
assert(bgrid._grid->_processors[0] == 1);
std::cout << GridLogMessage << "CoarseGrid = " << coarseFourDimLatt << " with basis = " << Nstop1 << std::endl;
GridCartesian * UCoarseGrid = SpaceTimeGrid::makeFourDimGrid(coarseFourDimLatt, GridDefaultSimd(Nd,vComplex::Nsimd()),GridDefaultMpi());
GridCartesian * FCoarseGrid = SpaceTimeGrid::makeFiveDimGrid(bgrid._nb[0],UCoarseGrid);
Chebyshev<Field> Cheb2(alpha2,beta,Npoly2);
CoarseLatticeFermion<Nstop1> src_coarse(FCoarseGrid);
// Second round of Lanczos in blocked space
std::vector<RealD> eval2(Nm2);
std::vector<RealD> eval3(Nm2);
BasisFieldVector<CoarseLatticeFermion<Nstop1> > coef(Nm2,FCoarseGrid);
ProjectedFunctionHermOp<CoarseLatticeFermion<Nstop1>,LatticeFermion> Op2plain(pr,Cheb2,HermOp);
CheckpointedLinearFunction<CoarseLatticeFermion<Nstop1> > Op2ckpt(src_coarse._grid,Op2plain,"checkpoint",MaxApply2);
LinearFunction< CoarseLatticeFermion<Nstop1> >* Op2;
if (MaxApply2) {
Op2 = &Op2ckpt;
} else {
Op2 = &Op2plain;
}
ProjectedHermOp<CoarseLatticeFermion<Nstop1>,LatticeFermion> Op2nopoly(pr,HermOp);
ImplicitlyRestartedLanczos<CoarseLatticeFermion<Nstop1> > IRL2(*Op2,*Op2,Nstop2,Nk2,Nm2,resid2,MaxIt,betastp2,MinRes2);
src_coarse = 1.0;
// Precision test
{
Field tmp(bgrid._grid);
CoarseLatticeFermion<Nstop1> tmp2(FCoarseGrid);
CoarseLatticeFermion<Nstop1> tmp3(FCoarseGrid);
tmp2 = 1.0;
tmp3 = 1.0;
pr.coarseToFine(tmp2,tmp);
pr.fineToCoarse(tmp,tmp2);
tmp2 -= tmp3;
std::cout << GridLogMessage << "Precision Test c->f->c: " << norm2(tmp2) / norm2(tmp3) << std::endl;
//bgrid._grid->Barrier();
//return;
}
int Nconv;
if (!FieldVectorIO::read_compressed_vectors("lanczos.output",pr,coef) ||
!read_evals(UCoarseGrid,(char *)"lanczos.output/eigen-values.txt",eval3) ||
!read_evals(UCoarseGrid,(char *)"lanczos.output/eigen-values.txt.linear",eval1) ||
!read_evals(UCoarseGrid,(char *)"lanczos.output/eigen-values.txt.poly",eval2)
) {
IRL2.calc(eval2,coef._v,src_coarse,Nconv,true);
coef.resize(Nstop2);
eval2.resize(Nstop2);
eval3.resize(Nstop2);
std::vector<Field> step3_cache;
// reconstruct eigenvalues of original operator
for (int i=0;i<Nstop2;i++){
RealD eval2_linear;
if (i<Nstop1) {
eval2_linear = eval1[i];
} else {
eval2_linear = eval2[i-1];
}
RealD eval2_poly = eval2[i];
RealD eval_reconstruct = Cheb2.approxInv(eval2_poly,eval2_linear,100,1e-10);
std::cout << i << " Reconstructed eval = " << eval_reconstruct << " from quess " << eval2_linear << std::endl;
eval2[i] = eval_reconstruct;
}
// as demonstrated in CG test below, best result from mixed determination
for (int i=0;i<Nstop2;i++)
eval3[i] = (i < Nstop1) ? eval1[i] : eval2[i];
for(int i=0;i<Nstop2;i++){
std::cout << i<<" / "<< Nstop2<< " eigenvalue "<< eval3[i] <<std::endl;
};
// write
mkdir("lanczos.output",ACCESSPERMS);
FieldVectorIO::write_compressed_vectors("lanczos.output",pr,coef,nsingle);
if (bgrid._grid->IsBoss()) {
write_evals((char *)"lanczos.output/eigen-values.txt",eval3);
write_evals((char *)"lanczos.output/eigen-values.txt.linear",eval1);
write_evals((char *)"lanczos.output/eigen-values.txt.poly",eval2);
}
}
// fix up eigenvalues
if (!read_evals(UCoarseGrid,(char *)"lanczos.output/eigen-values.txt.smoothed",eval3) && smoothed_eval_enabled) {
ConjugateGradient<LatticeFermion> CG(smoothed_eval_inner_resid, smoothed_eval_inner, false);
LatticeFermion v_i(basis[0]._grid);
auto tmp = v_i;
auto tmp2 = v_i;
for (int i=smoothed_eval_begin;i<smoothed_eval_end;i++) {
GridStopWatch gsw;
gsw.Start();
pr.coarseToFine(coef[i],v_i);
v_i.checkerboard = Odd;
for (int j=0;j<smoothed_eval_outer;j++) {
tmp=zero;
//pr.deflate(coef,eval3,Nstop2,v_i,tmp);
CG(HermOp, v_i, tmp);
v_i = 1.0 / ::sqrt( norm2(tmp) ) * tmp;
}
tmp = v_i;
HermOp.HermOp(tmp,tmp2);
RealD ev = innerProduct(tmp,tmp2).real();
gsw.Stop();
std::cout << GridLogMessage << "Smoothed eigenvalue " << i << " from " << eval3[i] << " to " << ev << " in " << gsw.Elapsed() << std::endl;
// " with effective smoother precision " << (CG.ResHistory.back() / CG.ResHistory.front() ) << std::endl;
// CG.ResHistory.clear();
eval3[i] = ev;
}
if (bgrid._grid->IsBoss()) {
write_evals((char *)"lanczos.output/eigen-values.txt.smoothed",eval3);
write_evals((char *)"lanczos.output/eigen-values.txt",eval3); // also reset this to the best ones we have available
}
}
// do CG test with and without deflation
if (cg_test_enabled) {
ConjugateGradient<LatticeFermion> CG(1.0e-8, cg_test_maxiter, false);
LatticeFermion src_orig(bgrid._grid);
src_orig.checkerboard = Odd;
src_orig = 1.0;
src_orig = src_orig * (1.0 / ::sqrt(norm2(src_orig)) );
auto result = src_orig;
// undeflated solve
std::cout << GridLogMessage << " Undeflated solve "<<std::endl;
result = zero;
CG(HermOp, src_orig, result);
// if (UCoarseGrid->IsBoss())
// write_history("cg_test.undefl",CG.ResHistory);
// CG.ResHistory.clear();
// deflated solve with all eigenvectors
std::cout << GridLogMessage << " Deflated solve with all evectors"<<std::endl;
result = zero;
pr.deflate(coef,eval2,Nstop2,src_orig,result);
CG(HermOp, src_orig, result);
// if (UCoarseGrid->IsBoss())
// write_history("cg_test.defl_all",CG.ResHistory);
// CG.ResHistory.clear();
// deflated solve with non-blocked eigenvectors
std::cout << GridLogMessage << " Deflated solve with non-blocked evectors"<<std::endl;
result = zero;
pr.deflate(coef,eval1,Nstop1,src_orig,result);
CG(HermOp, src_orig, result);
// if (UCoarseGrid->IsBoss())
// write_history("cg_test.defl_full",CG.ResHistory);
// CG.ResHistory.clear();
// deflated solve with all eigenvectors and original eigenvalues from proj
std::cout << GridLogMessage << " Deflated solve with all eigenvectors and original eigenvalues from proj"<<std::endl;
result = zero;
pr.deflate(coef,eval3,Nstop2,src_orig,result);
CG(HermOp, src_orig, result);
// if (UCoarseGrid->IsBoss())
// write_history("cg_test.defl_all_ev3",CG.ResHistory);
// CG.ResHistory.clear();
}
}
template<typename Field>
void quick_krylov_basis(BasisFieldVector<Field>& evec,Field& src,LinearFunction<Field>& Op,int Nstop) {
Field tmp = src;
Field tmp2 = tmp;
for (int i=0;i<Nstop;i++) {
GridStopWatch gsw;
gsw.Start();
Op(tmp,tmp2);
gsw.Stop();
evec.orthogonalize(tmp2,i);
RealD nn = norm2(tmp2);
nn = Grid::sqrt(nn);
tmp2 = tmp2 * (1.0/nn);
evec[i] = tmp2;
tmp = tmp2;
std::cout << GridLogMessage << "Quick_krylov_basis: " << i << "/" << Nstop << " timing of operator=" << gsw.Elapsed() << std::endl;
}
}
int main (int argc, char ** argv) {
Grid_init(&argc,&argv);
const int MaxIt = 10000;
int Ls;
RealD mass;
RealD M5;
std::vector < std::complex<double> > omega;
RealD alpha1, alpha2, beta;
int Npoly1, Npoly2;
int Nstop1, Nstop2;
int Nk1, Nk2;
int Np1, Np2;
int MinRes1, MinRes2;
int SkipTest2, MaxApply2;
bool checkpoint_basis;
bool cg_test_enabled;
bool exit_after_basis_calculation;
bool simple_krylov_basis;
int cg_test_maxiter;
int nsingle; // store in single precision, the rest in FP16
int max_cheb_time_ms;
bool smoothed_eval_enabled;
int smoothed_eval_inner;
int smoothed_eval_outer;
int smoothed_eval_begin;
int smoothed_eval_end;
RealD smoothed_eval_inner_resid;
// vector representation
std::vector<int> block_size; // 5d block size
RealD resid1, resid2, betastp1, betastp2, basis_norm_threshold;
std::string config;
Params jp("params.txt");
PADD(jp,Npoly1); PADD(jp,Npoly2);
PADD(jp,max_cheb_time_ms);
PADD(jp,Nstop1); PADD(jp,Nstop2); PADD(jp,MaxApply2);
PADD(jp,Nk1); PADD(jp,Nk2); PADD(jp,betastp1); PADD(jp,betastp2);
PADD(jp,Np1); PADD(jp,Np2); basis_norm_threshold = 1e-5; //PADD(jp,basis_norm_threshold);
PADD(jp,block_size); PADD(jp,smoothed_eval_enabled); PADD(jp,smoothed_eval_inner);
PADD(jp,resid1); PADD(jp,resid2); PADD(jp,smoothed_eval_outer);
PADD(jp,alpha1); PADD(jp,alpha2); PADD(jp,smoothed_eval_begin);
PADD(jp,MinRes1); PADD(jp,MinRes2); PADD(jp,smoothed_eval_end);
PADD(jp,beta); PADD(jp,mass); PADD(jp,smoothed_eval_inner_resid);
PADD(jp,omega); PADD(jp,config);
PADD(jp,M5); PADD(jp,cg_test_enabled);
PADD(jp,cg_test_maxiter); PADD(jp,checkpoint_basis);
PADD(jp,nsingle); PADD(jp,exit_after_basis_calculation);
PADD(jp,simple_krylov_basis); PADD(jp,SkipTest2);
Ls = (int)omega.size();
// Grids
GridCartesian * UGrid = SpaceTimeGrid::makeFourDimGrid(GridDefaultLatt(), GridDefaultSimd(Nd,vComplex::Nsimd()),GridDefaultMpi());
GridCartesian * UGridHP = SpaceTimeGrid::makeFourDimGrid(GridDefaultLatt(), GridDefaultSimd(Nd,vComplexD::Nsimd()),GridDefaultMpi());
GridRedBlackCartesian * UrbGrid = SpaceTimeGrid::makeFourDimRedBlackGrid(UGrid);
GridRedBlackCartesian * UrbGridHP = SpaceTimeGrid::makeFourDimRedBlackGrid(UGridHP);
GridCartesian * FGrid = SpaceTimeGrid::makeFiveDimGrid(Ls,UGrid);
GridCartesian * FGridHP = SpaceTimeGrid::makeFiveDimGrid(Ls,UGridHP);
GridRedBlackCartesian * FrbGrid = SpaceTimeGrid::makeFiveDimRedBlackGrid(Ls,UGrid);
GridRedBlackCartesian * FrbGridHP = SpaceTimeGrid::makeFiveDimRedBlackGrid(Ls,UGridHP);
// Gauge field
LatticeGaugeField Umu(UGrid);
FieldMetaData header;
NerscIO::readConfiguration(Umu,header,config);
std::cout << GridLogMessage << "Lattice dimensions: " << GridDefaultLatt()
<< " Ls: " << Ls << std::endl;
// ZMobius EO Operator
ZMobiusFermionR Ddwf(Umu, *FGrid, *FrbGrid, *UGrid, *UrbGrid, mass, M5, omega,1.,0.);
SchurDiagTwoOperator<ZMobiusFermionR,LatticeFermion> HermOp(Ddwf);
// Eigenvector storage
const int Nm1 = Np1 + Nk1;
const int Nm2 = Np2 + Nk2; // maximum number of vectors we need to keep
std::cout << GridLogMessage << "Keep " << Nm1 << " full vectors" << std::endl;
std::cout << GridLogMessage << "Keep " << Nm2 << " total vectors" << std::endl;
assert(Nm2 >= Nm1);
BasisFieldVector<LatticeFermion> evec(Nm1,FrbGrid); // start off with keeping full vectors
// First and second cheby
Chebyshev<LatticeFermion> Cheb1(alpha1,beta,Npoly1);
FunctionHermOp<LatticeFermion> Op1(Cheb1,HermOp);
PlainHermOp<LatticeFermion> Op1test(HermOp);
// Eigenvalue storage
std::vector<RealD> eval1(evec.size());
// Construct source vector
LatticeFermion src(FrbGrid);
{
src=1.0;
src.checkerboard = Odd;
// normalize
RealD nn = norm2(src);
nn = Grid::sqrt(nn);
src = src * (1.0/nn);
}
// Do a benchmark and a quick exit if performance is too little (ugly but needed due to performance fluctuations)
if (max_cheb_time_ms) {
// one round of warmup
auto tmp = src;
GridStopWatch gsw1,gsw2;
gsw1.Start();
Cheb1(HermOp,src,tmp);
gsw1.Stop();
Ddwf.ZeroCounters();
gsw2.Start();
Cheb1(HermOp,src,tmp);
gsw2.Stop();
Ddwf.Report();
std::cout << GridLogMessage << "Performance check; warmup = " << gsw1.Elapsed() << " test = " << gsw2.Elapsed() << std::endl;
int ms = (int)(gsw2.useconds()/1e3);
if (ms > max_cheb_time_ms) {
std::cout << GridLogMessage << "Performance too poor: " << ms << " ms, cutoff = " << max_cheb_time_ms << " ms" << std::endl;
Grid_finalize();
return 2;
}
}
// First round of Lanczos to get low mode basis
ImplicitlyRestartedLanczos<LatticeFermion> IRL1(Op1,Op1test,Nstop1,Nk1,Nm1,resid1,MaxIt,betastp1,MinRes1);
int Nconv;
char tag[1024];
if (!FieldVectorIO::read_argonne(evec,(char *)"checkpoint") || !read_evals(UGrid,(char *)"checkpoint/eigen-values.txt",eval1)) {
if (simple_krylov_basis) {
quick_krylov_basis(evec,src,Op1,Nstop1);
} else {
IRL1.calc(eval1,evec._v,src,Nconv,false);
}
evec.resize(Nstop1); // and throw away superfluous
eval1.resize(Nstop1);
if (checkpoint_basis)
FieldVectorIO::write_argonne(evec,(char *)"checkpoint");
if (UGrid->IsBoss() && checkpoint_basis)
write_evals((char *)"checkpoint/eigen-values.txt",eval1);
Ddwf.Report();
if (exit_after_basis_calculation) {
Grid_finalize();
return 0;
}
}
// now test eigenvectors
if (!simple_krylov_basis) {
for (int i=0;i<Nstop1;i++){
auto B = evec[i];
auto tmp = B;
auto v = B;
{
HermOp.HermOp(B,v);
RealD vnum = real(innerProduct(B,v)); // HermOp.
RealD vden = norm2(B);
RealD vv0 = norm2(v);
RealD eval2 = vnum/vden;
v -= eval2*B;
RealD vv = norm2(v);
std::cout << i << " OP eval = " << eval2 << " (" << eval1[i] << ") "
<< "res2 = " << vv << " norm2 = " << norm2(B) << std::endl;
}
}
}
// do second step only if needed
if (Nstop1 <= Nstop2) {
// Now setup blocking
assert(evec.size() == Nstop1);
BlockedGrid<LatticeFermion> bgrid(FrbGrid, block_size);
BlockProjector<LatticeFermion> pr(evec,bgrid);
pr.createOrthonormalBasis(basis_norm_threshold);
pr.createOrthonormalBasis(basis_norm_threshold); // another round due to precision issues created by local coherence
constexpr int common_basis_sizes[] = { 60, 250, 400 };
constexpr int n_common_basis_sizes = sizeof(common_basis_sizes) / sizeof(common_basis_sizes[0]);
switch (Nstop1) {
#define BASIS(n) case common_basis_sizes[n]:\
CoarseGridLanczos<LatticeFermion,common_basis_sizes[n]>\
(pr,alpha2,beta,Npoly2,Nstop2,Nk2,Nm2,resid2,betastp2,MaxIt,MinRes2,HermOp,eval1, \
cg_test_enabled,cg_test_maxiter,nsingle,SkipTest2, \
MaxApply2,smoothed_eval_enabled,smoothed_eval_inner,smoothed_eval_outer, \
smoothed_eval_begin,smoothed_eval_end,smoothed_eval_inner_resid); break;
BASIS(0);
BASIS(1);
BASIS(2);
default:
std::cout << GridLogMessage << "Basis size " << Nstop1 << " must be added at compile-time" << std::endl;
std::cout << GridLogMessage << "Currently available sizes: " << std::endl;
for (int i=0;i<n_common_basis_sizes;i++) {
std::cout << GridLogMessage << " " << common_basis_sizes[i] << std::endl;
}
}
}
Grid_finalize();
}

View File

@ -0,0 +1,254 @@
/*************************************************************************************
Grid physics library, www.github.com/paboyle/Grid
Source file: ./tests/Test_dwf_compressed_lanczos_reorg.cc
Copyright (C) 2017
Author: Leans heavily on Christoph Lehner's code
Author: Peter Boyle <paboyle@ph.ed.ac.uk>
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
See the full license in the file "LICENSE" in the top level distribution directory
*************************************************************************************/
/* END LEGAL */
/*
* Reimplement the badly named "multigrid" lanczos as compressed Lanczos using the features
* in Grid that were intended to be used to support blocked Aggregates, from
*/
#include <Grid/Grid.h>
#include <Grid/algorithms/iterative/ImplicitlyRestartedLanczos.h>
#include <Grid/algorithms/iterative/LocalCoherenceLanczos.h>
using namespace std;
using namespace Grid;
using namespace Grid::QCD;
template<class Fobj,class CComplex,int nbasis>
class LocalCoherenceLanczosScidac : public LocalCoherenceLanczos<Fobj,CComplex,nbasis>
{
public:
typedef iVector<CComplex,nbasis > CoarseSiteVector;
typedef Lattice<CoarseSiteVector> CoarseField;
typedef Lattice<CComplex> CoarseScalar; // used for inner products on fine field
typedef Lattice<Fobj> FineField;
LocalCoherenceLanczosScidac(GridBase *FineGrid,GridBase *CoarseGrid,
LinearOperatorBase<FineField> &FineOp,
int checkerboard)
// Base constructor
: LocalCoherenceLanczos<Fobj,CComplex,nbasis>(FineGrid,CoarseGrid,FineOp,checkerboard)
{};
void checkpointFine(std::string evecs_file,std::string evals_file)
{
assert(this->_Aggregate.subspace.size()==nbasis);
emptyUserRecord record;
Grid::QCD::ScidacWriter WR;
WR.open(evecs_file);
for(int k=0;k<nbasis;k++) {
WR.writeScidacFieldRecord(this->_Aggregate.subspace[k],record);
}
WR.close();
XmlWriter WRx(evals_file);
write(WRx,"evals",this->evals_fine);
}
void checkpointFineRestore(std::string evecs_file,std::string evals_file)
{
this->evals_fine.resize(nbasis);
this->_Aggregate.subspace.resize(nbasis,this->_FineGrid);
std::cout << GridLogIRL<< "checkpointFineRestore: Reading evals from "<<evals_file<<std::endl;
XmlReader RDx(evals_file);
read(RDx,"evals",this->evals_fine);
assert(this->evals_fine.size()==nbasis);
std::cout << GridLogIRL<< "checkpointFineRestore: Reading evecs from "<<evecs_file<<std::endl;
emptyUserRecord record;
Grid::QCD::ScidacReader RD ;
RD.open(evecs_file);
for(int k=0;k<nbasis;k++) {
this->_Aggregate.subspace[k].checkerboard=this->_checkerboard;
RD.readScidacFieldRecord(this->_Aggregate.subspace[k],record);
}
RD.close();
}
void checkpointCoarse(std::string evecs_file,std::string evals_file)
{
int n = this->evec_coarse.size();
emptyUserRecord record;
Grid::QCD::ScidacWriter WR;
WR.open(evecs_file);
for(int k=0;k<n;k++) {
WR.writeScidacFieldRecord(this->evec_coarse[k],record);
}
WR.close();
XmlWriter WRx(evals_file);
write(WRx,"evals",this->evals_coarse);
}
void checkpointCoarseRestore(std::string evecs_file,std::string evals_file,int nvec)
{
std::cout << "resizing coarse vecs to " << nvec<< std::endl;
this->evals_coarse.resize(nvec);
this->evec_coarse.resize(nvec,this->_CoarseGrid);
std::cout << GridLogIRL<< "checkpointCoarseRestore: Reading evals from "<<evals_file<<std::endl;
XmlReader RDx(evals_file);
read(RDx,"evals",this->evals_coarse);
assert(this->evals_coarse.size()==nvec);
emptyUserRecord record;
std::cout << GridLogIRL<< "checkpointCoarseRestore: Reading evecs from "<<evecs_file<<std::endl;
Grid::QCD::ScidacReader RD ;
RD.open(evecs_file);
for(int k=0;k<nvec;k++) {
RD.readScidacFieldRecord(this->evec_coarse[k],record);
}
RD.close();
}
};
int main (int argc, char ** argv) {
Grid_init(&argc,&argv);
GridLogIRL.TimingMode(1);
LocalCoherenceLanczosParams Params;
{
Params.omega.resize(10);
Params.blockSize.resize(5);
XmlWriter writer("Params_template.xml");
write(writer,"Params",Params);
std::cout << GridLogMessage << " Written Params_template.xml" <<std::endl;
}
{
XmlReader reader(std::string("./Params.xml"));
read(reader, "Params", Params);
}
int Ls = (int)Params.omega.size();
RealD mass = Params.mass;
RealD M5 = Params.M5;
std::vector<int> blockSize = Params.blockSize;
// Grids
GridCartesian * UGrid = SpaceTimeGrid::makeFourDimGrid(GridDefaultLatt(),
GridDefaultSimd(Nd,vComplex::Nsimd()),
GridDefaultMpi());
GridRedBlackCartesian * UrbGrid = SpaceTimeGrid::makeFourDimRedBlackGrid(UGrid);
GridCartesian * FGrid = SpaceTimeGrid::makeFiveDimGrid(Ls,UGrid);
GridRedBlackCartesian * FrbGrid = SpaceTimeGrid::makeFiveDimRedBlackGrid(Ls,UGrid);
std::vector<int> fineLatt = GridDefaultLatt();
int dims=fineLatt.size();
assert(blockSize.size()==dims+1);
std::vector<int> coarseLatt(dims);
std::vector<int> coarseLatt5d ;
for (int d=0;d<coarseLatt.size();d++){
coarseLatt[d] = fineLatt[d]/blockSize[d]; assert(coarseLatt[d]*blockSize[d]==fineLatt[d]);
}
std::cout << GridLogMessage<< " 5d coarse lattice is ";
for (int i=0;i<coarseLatt.size();i++){
std::cout << coarseLatt[i]<<"x";
}
int cLs = Ls/blockSize[dims]; assert(cLs*blockSize[dims]==Ls);
std::cout << cLs<<std::endl;
GridCartesian * CoarseGrid4 = SpaceTimeGrid::makeFourDimGrid(coarseLatt, GridDefaultSimd(Nd,vComplex::Nsimd()),GridDefaultMpi());
GridRedBlackCartesian * CoarseGrid4rb = SpaceTimeGrid::makeFourDimRedBlackGrid(CoarseGrid4);
GridCartesian * CoarseGrid5 = SpaceTimeGrid::makeFiveDimGrid(cLs,CoarseGrid4);
GridRedBlackCartesian * CoarseGrid5rb = SpaceTimeGrid::makeFourDimRedBlackGrid(CoarseGrid5);
// Gauge field
LatticeGaugeField Umu(UGrid);
FieldMetaData header;
NerscIO::readConfiguration(Umu,header,Params.config);
std::cout << GridLogMessage << "Lattice dimensions: " << GridDefaultLatt() << " Ls: " << Ls << std::endl;
// ZMobius EO Operator
ZMobiusFermionR Ddwf(Umu, *FGrid, *FrbGrid, *UGrid, *UrbGrid, mass, M5, Params.omega,1.,0.);
SchurDiagTwoOperator<ZMobiusFermionR,LatticeFermion> HermOp(Ddwf);
// Eigenvector storage
LanczosParams fine =Params.FineParams;
LanczosParams coarse=Params.CoarseParams;
const int Ns1 = fine.Nstop; const int Ns2 = coarse.Nstop;
const int Nk1 = fine.Nk; const int Nk2 = coarse.Nk;
const int Nm1 = fine.Nm; const int Nm2 = coarse.Nm;
std::cout << GridLogMessage << "Keep " << fine.Nstop << " fine vectors" << std::endl;
std::cout << GridLogMessage << "Keep " << coarse.Nstop << " coarse vectors" << std::endl;
assert(Nm2 >= Nm1);
const int nbasis= 60;
assert(nbasis==Ns1);
LocalCoherenceLanczosScidac<vSpinColourVector,vTComplex,nbasis> _LocalCoherenceLanczos(FrbGrid,CoarseGrid5rb,HermOp,Odd);
std::cout << GridLogMessage << "Constructed LocalCoherenceLanczos" << std::endl;
assert( (Params.doFine)||(Params.doFineRead));
if ( Params.doFine ) {
std::cout << GridLogMessage << "Performing fine grid IRL Nstop "<< Ns1 << " Nk "<<Nk1<<" Nm "<<Nm1<< std::endl;
_LocalCoherenceLanczos.calcFine(fine.Cheby,
fine.Nstop,fine.Nk,fine.Nm,
fine.resid,fine.MaxIt,
fine.betastp,fine.MinRes);
std::cout << GridLogIRL<<"Checkpointing Fine evecs"<<std::endl;
_LocalCoherenceLanczos.checkpointFine(std::string("evecs.scidac"),std::string("evals.xml"));
_LocalCoherenceLanczos.testFine(fine.resid*100.0); // Coarse check
_LocalCoherenceLanczos.Orthogonalise();
}
if ( Params.doFineRead ) {
_LocalCoherenceLanczos.checkpointFineRestore(std::string("evecs.scidac"),std::string("evals.xml"));
_LocalCoherenceLanczos.testFine(fine.resid*100.0); // Coarse check
_LocalCoherenceLanczos.Orthogonalise();
}
if ( Params.doCoarse ) {
std::cout << GridLogMessage << "Orthogonalising " << nbasis<<" Nm "<<Nm2<< std::endl;
std::cout << GridLogMessage << "Performing coarse grid IRL Nstop "<< Ns2<< " Nk "<<Nk2<<" Nm "<<Nm2<< std::endl;
_LocalCoherenceLanczos.calcCoarse(coarse.Cheby,Params.Smoother,Params.coarse_relax_tol,
coarse.Nstop, coarse.Nk,coarse.Nm,
coarse.resid, coarse.MaxIt,
coarse.betastp,coarse.MinRes);
std::cout << GridLogIRL<<"Checkpointing coarse evecs"<<std::endl;
_LocalCoherenceLanczos.checkpointCoarse(std::string("evecs.coarse.scidac"),std::string("evals.coarse.xml"));
}
if ( Params.doCoarseRead ) {
// Verify we can reread ???
_LocalCoherenceLanczos.checkpointCoarseRestore(std::string("evecs.coarse.scidac"),std::string("evals.coarse.xml"),coarse.Nstop);
_LocalCoherenceLanczos.testCoarse(coarse.resid*100.0,Params.Smoother,Params.coarse_relax_tol); // Coarse check
}
Grid_finalize();
}

View File

@ -84,11 +84,12 @@ int main (int argc, char ** argv)
std::vector<double> Coeffs { 0.,-1.};
Polynomial<FermionField> PolyX(Coeffs);
Chebyshev<FermionField> Cheb(0.2,5.,11);
// ChebyshevLanczos<LatticeFermion> Cheb(9.,1.,0.,20);
// Cheb.csv(std::cout);
// exit(-24);
ImplicitlyRestartedLanczos<FermionField> IRL(HermOp,Cheb,Nstop,Nk,Nm,resid,MaxIt);
Chebyshev<FermionField> Cheby(0.2,5.,11);
FunctionHermOp<FermionField> OpCheby(Cheby,HermOp);
PlainHermOp<FermionField> Op (HermOp);
ImplicitlyRestartedLanczos<FermionField> IRL(OpCheby,Op,Nstop,Nk,Nm,resid,MaxIt);
std::vector<RealD> eval(Nm);

View File

@ -119,12 +119,13 @@ int main (int argc, char ** argv)
RealD beta = 0.1;
RealD mu = 0.0;
int order = 11;
ChebyshevLanczos<LatticeComplex> Cheby(alpha,beta,mu,order);
Chebyshev<LatticeComplex> Cheby(alpha,beta,order);
std::ofstream file("cheby.dat");
Cheby.csv(file);
HermOpOperatorFunction<LatticeComplex> X;
DumbOperator<LatticeComplex> HermOp(grid);
FunctionHermOp<LatticeComplex> OpCheby(Cheby,HermOp);
PlainHermOp<LatticeComplex> Op(HermOp);
const int Nk = 40;
const int Nm = 80;
@ -133,8 +134,9 @@ int main (int argc, char ** argv)
int Nconv;
RealD eresid = 1.0e-6;
ImplicitlyRestartedLanczos<LatticeComplex> IRL(HermOp,X,Nk,Nk,Nm,eresid,Nit);
ImplicitlyRestartedLanczos<LatticeComplex> ChebyIRL(HermOp,Cheby,Nk,Nk,Nm,eresid,Nit);
ImplicitlyRestartedLanczos<LatticeComplex> IRL(Op,Op,Nk,Nk,Nm,eresid,Nit);
ImplicitlyRestartedLanczos<LatticeComplex> ChebyIRL(OpCheby,Op,Nk,Nk,Nm,eresid,Nit);
LatticeComplex src(grid); gaussian(RNG,src);
{

View File

@ -86,9 +86,12 @@ int main(int argc, char** argv) {
std::vector<double> Coeffs{0, 1.};
Polynomial<FermionField> PolyX(Coeffs);
Chebyshev<FermionField> Cheb(0.0, 10., 12);
ImplicitlyRestartedLanczos<FermionField> IRL(HermOp, PolyX, Nstop, Nk, Nm,
resid, MaxIt);
Chebyshev<FermionField> Cheby(0.0, 10., 12);
FunctionHermOp<FermionField> OpCheby(Cheby,HermOp);
PlainHermOp<FermionField> Op (HermOp);
ImplicitlyRestartedLanczos<FermionField> IRL(OpCheby, Op, Nstop, Nk, Nm, resid, MaxIt);
std::vector<RealD> eval(Nm);
FermionField src(FGrid);

View File

@ -555,13 +555,13 @@ int main (int argc, char ** argv)
std::cout<<GridLogMessage << "Calling Aggregation class to build subspace" <<std::endl;
std::cout<<GridLogMessage << "**************************************************"<< std::endl;
MdagMLinearOperator<DomainWallFermionR,LatticeFermion> HermDefOp(Ddwf);
Subspace Aggregates(Coarse5d,FGrid);
Subspace Aggregates(Coarse5d,FGrid,0);
// Aggregates.CreateSubspace(RNG5,HermDefOp,nbasis);
assert ( (nbasis & 0x1)==0);
int nb=nbasis/2;
std::cout<<GridLogMessage << " nbasis/2 = "<<nb<<std::endl;
// Aggregates.CreateSubspace(RNG5,HermDefOp,nb);
Aggregates.CreateSubspaceLanczos(RNG5,HermDefOp,nb);
Aggregates.CreateSubspace(RNG5,HermDefOp,nb);
// Aggregates.CreateSubspaceLanczos(RNG5,HermDefOp,nb);
for(int n=0;n<nb;n++){
G5R5(Aggregates.subspace[n+nb],Aggregates.subspace[n]);
std::cout<<GridLogMessage<<n<<" subspace "<<norm2(Aggregates.subspace[n+nb])<<" "<<norm2(Aggregates.subspace[n]) <<std::endl;

View File

@ -38,7 +38,7 @@ int main (int argc, char ** argv)
typedef typename DomainWallFermionR::ComplexField ComplexField;
typename DomainWallFermionR::ImplParams params;
const int Ls=8;
const int Ls=4;
Grid_init(&argc,&argv);
@ -47,42 +47,51 @@ int main (int argc, char ** argv)
std::vector<int> mpi_layout = GridDefaultMpi();
std::vector<int> mpi_split (mpi_layout.size(),1);
std::cout << "UGrid (world root)"<<std::endl;
GridCartesian * UGrid = SpaceTimeGrid::makeFourDimGrid(GridDefaultLatt(), GridDefaultSimd(Nd,vComplex::Nsimd()),GridDefaultMpi());
std::cout << "FGrid (child of UGrid)"<<std::endl;
GridCartesian * FGrid = SpaceTimeGrid::makeFiveDimGrid(Ls,UGrid);
int nrhs = UGrid->RankCount() ;
GridRedBlackCartesian * rbGrid = SpaceTimeGrid::makeFourDimRedBlackGrid(UGrid);
GridRedBlackCartesian * FrbGrid = SpaceTimeGrid::makeFiveDimRedBlackGrid(Ls,UGrid);
/////////////////////////////////////////////
// Split into 1^4 mpi communicators
/////////////////////////////////////////////
std::cout << "SGrid (world root)"<<std::endl;
for(int i=0;i<argc;i++){
if(std::string(argv[i]) == "--split"){
for(int k=0;k<mpi_layout.size();k++){
std::stringstream ss;
ss << argv[i+1+k];
ss >> mpi_split[k];
}
break;
}
}
int nrhs = 1;
int me;
for(int i=0;i<mpi_layout.size();i++) nrhs *= (mpi_layout[i]/mpi_split[i]);
GridCartesian * SGrid = new GridCartesian(GridDefaultLatt(),
GridDefaultSimd(Nd,vComplex::Nsimd()),
mpi_split,
*UGrid);
*UGrid,me);
GridCartesian * SFGrid = SpaceTimeGrid::makeFiveDimGrid(Ls,SGrid);
std::cout << "SFGrid"<<std::endl;
GridRedBlackCartesian * SrbGrid = SpaceTimeGrid::makeFourDimRedBlackGrid(SGrid);
std::cout << "SrbGrid"<<std::endl;
GridRedBlackCartesian * SFrbGrid = SpaceTimeGrid::makeFiveDimRedBlackGrid(Ls,SGrid);
std::cout << "SFrbGrid"<<std::endl;
///////////////////////////////////////////////
// Set up the problem as a 4d spreadout job
///////////////////////////////////////////////
std::vector<int> seeds({1,2,3,4});
GridParallelRNG pRNG(UGrid ); pRNG.SeedFixedIntegers(seeds);
GridParallelRNG pRNG5(FGrid); pRNG5.SeedFixedIntegers(seeds);
std::vector<FermionField> src(nrhs,FGrid);
std::vector<FermionField> src_chk(nrhs,FGrid);
std::vector<FermionField> result(nrhs,FGrid);
FermionField tmp(FGrid);
for(int s=0;s<nrhs;s++) random(pRNG5,src[s]);
for(int s=0;s<nrhs;s++) result[s] = zero;
for(int s=0;s<nrhs;s++) result[s]=zero;
LatticeGaugeField Umu(UGrid); SU3::HotConfiguration(pRNG,Umu);
@ -96,9 +105,11 @@ int main (int argc, char ** argv)
emptyUserRecord record;
std::string file("./scratch.scidac");
std::string filef("./scratch.scidac.ferm");
int me = UGrid->ThisRank();
LatticeGaugeField s_Umu(SGrid);
FermionField s_src(SFGrid);
FermionField s_src_split(SFGrid);
FermionField s_tmp(SFGrid);
FermionField s_res(SFGrid);
{
@ -157,6 +168,24 @@ int main (int argc, char ** argv)
FGrid->Barrier();
}
///////////////////////////////////////////////////////////////
// split the source out using MPI instead of I/O
///////////////////////////////////////////////////////////////
std::cout << GridLogMessage << " Splitting the grid data "<<std::endl;
Grid_split (src,s_src_split);
std::cout << GridLogMessage << " Finished splitting the grid data "<<std::endl;
for(int n=0;n<nrhs;n++){
std::cout <<GridLogMessage<<"Full "<< n <<" "<< norm2(src[n])<<std::endl;
}
s_tmp = s_src_split - s_src;
for(int n=0;n<nrhs;n++){
FGrid->Barrier();
if ( n==me ) {
std::cout << GridLogMessage<<"Split "<< me << " " << norm2(s_src_split) << " " << norm2(s_src)<< " diff " << norm2(s_tmp)<<std::endl;
}
FGrid->Barrier();
}
///////////////////////////////////////////////////////////////
// Set up N-solvers as trivially parallel
@ -164,6 +193,7 @@ int main (int argc, char ** argv)
RealD mass=0.01;
RealD M5=1.8;
DomainWallFermionR Dchk(Umu,*FGrid,*FrbGrid,*UGrid,*rbGrid,mass,M5);
DomainWallFermionR Ddwf(s_Umu,*SFGrid,*SFrbGrid,*SGrid,*SrbGrid,mass,M5);
std::cout << GridLogMessage << "****************************************************************** "<<std::endl;
@ -171,25 +201,40 @@ int main (int argc, char ** argv)
std::cout << GridLogMessage << "****************************************************************** "<<std::endl;
MdagMLinearOperator<DomainWallFermionR,FermionField> HermOp(Ddwf);
ConjugateGradient<FermionField> CG((1.0e-8/(me+1)),10000);
MdagMLinearOperator<DomainWallFermionR,FermionField> HermOpCk(Dchk);
ConjugateGradient<FermionField> CG((1.0e-5/(me+1)),10000);
s_res = zero;
CG(HermOp,s_src,s_res);
///////////////////////////////////////
// Share the information
///////////////////////////////////////
/////////////////////////////////////////////////////////////
// Report how long they all took
/////////////////////////////////////////////////////////////
std::vector<uint32_t> iterations(nrhs,0);
iterations[me] = CG.IterationsToComplete;
for(int n=0;n<nrhs;n++){
UGrid->GlobalSum(iterations[n]);
std::cout << GridLogMessage<<" Rank "<<n<<" "<< iterations[n]<<" CG iterations"<<std::endl;
}
/////////////////////////////////////////////////////////////
// Report how long they all took
// Gather and residual check on the results
/////////////////////////////////////////////////////////////
for(int r=0;r<nrhs;r++){
std::cout << GridLogMessage<<" Rank "<<r<<" "<< iterations[r]<<" CG iterations"<<std::endl;
std::cout << GridLogMessage<< "Unsplitting the result"<<std::endl;
Grid_unsplit(result,s_res);
/*
Grid_unsplit(src_chk,s_src);
for(int n=0;n<nrhs;n++){
tmp = src[n]-src_chk[n];
std::cout << " src_chk "<<n<<" "<<norm2(src_chk[n])<<" " <<norm2(src[n])<<" " <<norm2(tmp)<< std::endl;
std::cout << " diff " <<tmp<<std::endl;
}
*/
std::cout << GridLogMessage<< "Checking the residuals"<<std::endl;
for(int n=0;n<nrhs;n++){
HermOpCk.HermOp(result[n],tmp); tmp = tmp - src[n];
std::cout << GridLogMessage<<" resid["<<n<<"] "<< norm2(tmp)<<std::endl;
}
Grid_finalize();
}

View File

@ -0,0 +1,223 @@
/*************************************************************************************
Grid physics library, www.github.com/paboyle/Grid
Source file: ./tests/Test_dwf_mrhs_cg.cc
Copyright (C) 2015
Author: Peter Boyle <paboyle@ph.ed.ac.uk>
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
See the full license in the file "LICENSE" in the top level distribution directory
*************************************************************************************/
/* END LEGAL */
#include <Grid/Grid.h>
#include <Grid/algorithms/iterative/BlockConjugateGradient.h>
using namespace std;
using namespace Grid;
using namespace Grid::QCD;
int main (int argc, char ** argv)
{
typedef typename DomainWallFermionR::FermionField FermionField;
typedef typename DomainWallFermionR::ComplexField ComplexField;
typename DomainWallFermionR::ImplParams params;
const int Ls=4;
Grid_init(&argc,&argv);
std::vector<int> latt_size = GridDefaultLatt();
std::vector<int> simd_layout = GridDefaultSimd(Nd,vComplex::Nsimd());
std::vector<int> mpi_layout = GridDefaultMpi();
std::vector<int> mpi_split (mpi_layout.size(),1);
GridCartesian * UGrid = SpaceTimeGrid::makeFourDimGrid(GridDefaultLatt(),
GridDefaultSimd(Nd,vComplex::Nsimd()),
GridDefaultMpi());
GridCartesian * FGrid = SpaceTimeGrid::makeFiveDimGrid(Ls,UGrid);
GridRedBlackCartesian * rbGrid = SpaceTimeGrid::makeFourDimRedBlackGrid(UGrid);
GridRedBlackCartesian * FrbGrid = SpaceTimeGrid::makeFiveDimRedBlackGrid(Ls,UGrid);
/////////////////////////////////////////////
// Split into 1^4 mpi communicators
/////////////////////////////////////////////
for(int i=0;i<argc;i++){
if(std::string(argv[i]) == "--split"){
for(int k=0;k<mpi_layout.size();k++){
std::stringstream ss;
ss << argv[i+1+k];
ss >> mpi_split[k];
}
break;
}
}
int nrhs = 1;
int me;
for(int i=0;i<mpi_layout.size();i++) nrhs *= (mpi_layout[i]/mpi_split[i]);
GridCartesian * SGrid = new GridCartesian(GridDefaultLatt(),
GridDefaultSimd(Nd,vComplex::Nsimd()),
mpi_split,
*UGrid,me);
GridCartesian * SFGrid = SpaceTimeGrid::makeFiveDimGrid(Ls,SGrid);
GridRedBlackCartesian * SrbGrid = SpaceTimeGrid::makeFourDimRedBlackGrid(SGrid);
GridRedBlackCartesian * SFrbGrid = SpaceTimeGrid::makeFiveDimRedBlackGrid(Ls,SGrid);
///////////////////////////////////////////////
// Set up the problem as a 4d spreadout job
///////////////////////////////////////////////
std::vector<int> seeds({1,2,3,4});
GridParallelRNG pRNG(UGrid ); pRNG.SeedFixedIntegers(seeds);
GridParallelRNG pRNG5(FGrid); pRNG5.SeedFixedIntegers(seeds);
std::vector<FermionField> src(nrhs,FGrid);
std::vector<FermionField> src_chk(nrhs,FGrid);
std::vector<FermionField> result(nrhs,FGrid);
FermionField tmp(FGrid);
for(int s=0;s<nrhs;s++) result[s]=zero;
#undef LEXICO_TEST
#ifdef LEXICO_TEST
{
LatticeFermion lex(FGrid); lex = zero;
LatticeFermion ftmp(FGrid);
Integer stride =10000;
double nrm;
LatticeComplex coor(FGrid);
for(int d=0;d<5;d++){
LatticeCoordinate(coor,d);
ftmp = stride;
ftmp = ftmp * coor;
lex = lex + ftmp;
stride=stride/10;
}
for(int s=0;s<nrhs;s++) {
src[s]=lex;
ftmp = 1000*1000*s;
src[s] = src[s] + ftmp;
}
}
#else
for(int s=0;s<nrhs;s++) {
random(pRNG5,src[s]);
tmp = 100.0*s;
src[s] = (src[s] * 0.1) + tmp;
std::cout << " src ]"<<s<<"] "<<norm2(src[s])<<std::endl;
}
#endif
for(int n =0 ; n< nrhs ; n++) {
std::cout << " src"<<n<<"\n"<< src[n] <<std::endl;
}
LatticeGaugeField Umu(UGrid); SU3::HotConfiguration(pRNG,Umu);
/////////////////
// MPI only sends
/////////////////
LatticeGaugeField s_Umu(SGrid);
FermionField s_src(SFGrid);
FermionField s_tmp(SFGrid);
FermionField s_res(SFGrid);
///////////////////////////////////////////////////////////////
// split the source out using MPI instead of I/O
///////////////////////////////////////////////////////////////
Grid_split (Umu,s_Umu);
Grid_split (src,s_src);
std::cout << " split rank " <<me << " s_src "<<norm2(s_src)<<std::endl;
std::cout << " s_src\n "<< s_src <<std::endl;
#ifdef LEXICO_TEST
FermionField s_src_tmp(SFGrid);
FermionField s_src_diff(SFGrid);
{
LatticeFermion lex(SFGrid); lex = zero;
LatticeFermion ftmp(SFGrid);
Integer stride =10000;
double nrm;
LatticeComplex coor(SFGrid);
for(int d=0;d<5;d++){
LatticeCoordinate(coor,d);
ftmp = stride;
ftmp = ftmp * coor;
lex = lex + ftmp;
stride=stride/10;
}
s_src_tmp=lex;
ftmp = 1000*1000*me;
s_src_tmp = s_src_tmp + ftmp;
}
s_src_diff = s_src_tmp - s_src;
std::cout << " s_src_diff " << norm2(s_src_diff)<<std::endl;
std::cout << " s_src \n" << s_src << std::endl;
std::cout << " s_src_tmp \n" << s_src_tmp << std::endl;
std::cout << " s_src_diff \n" << s_src_diff << std::endl;
#endif
///////////////////////////////////////////////////////////////
// Set up N-solvers as trivially parallel
///////////////////////////////////////////////////////////////
RealD mass=0.01;
RealD M5=1.8;
DomainWallFermionR Dchk(Umu,*FGrid,*FrbGrid,*UGrid,*rbGrid,mass,M5);
DomainWallFermionR Ddwf(s_Umu,*SFGrid,*SFrbGrid,*SGrid,*SrbGrid,mass,M5);
std::cout << GridLogMessage << "****************************************************************** "<<std::endl;
std::cout << GridLogMessage << " Calling DWF CG "<<std::endl;
std::cout << GridLogMessage << "****************************************************************** "<<std::endl;
MdagMLinearOperator<DomainWallFermionR,FermionField> HermOp(Ddwf);
MdagMLinearOperator<DomainWallFermionR,FermionField> HermOpCk(Dchk);
ConjugateGradient<FermionField> CG((1.0e-5),10000);
s_res = zero;
CG(HermOp,s_src,s_res);
std::cout << " s_res norm "<<norm2(s_res)<<std::endl;
/////////////////////////////////////////////////////////////
// Report how long they all took
/////////////////////////////////////////////////////////////
std::vector<uint32_t> iterations(nrhs,0);
iterations[me] = CG.IterationsToComplete;
for(int n=0;n<nrhs;n++){
UGrid->GlobalSum(iterations[n]);
std::cout << GridLogMessage<<" Rank "<<n<<" "<< iterations[n]<<" CG iterations"<<std::endl;
}
/////////////////////////////////////////////////////////////
// Gather and residual check on the results
/////////////////////////////////////////////////////////////
std::cout << GridLogMessage<< "Unsplitting the result"<<std::endl;
Grid_unsplit(result,s_res);
std::cout << GridLogMessage<< "Checking the residuals"<<std::endl;
for(int n=0;n<nrhs;n++){
std::cout << " res["<<n<<"] norm "<<norm2(result[n])<<std::endl;
HermOpCk.HermOp(result[n],tmp); tmp = tmp - src[n];
std::cout << GridLogMessage<<" resid["<<n<<"] "<< norm2(tmp)/norm2(src[n])<<std::endl;
}
Grid_finalize();
}

View File

@ -0,0 +1,164 @@
/*************************************************************************************
Grid physics library, www.github.com/paboyle/Grid
Source file: ./tests/Test_dwf_mrhs_cg.cc
Copyright (C) 2015
Author: Peter Boyle <paboyle@ph.ed.ac.uk>
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
See the full license in the file "LICENSE" in the top level distribution directory
*************************************************************************************/
/* END LEGAL */
#include <Grid/Grid.h>
#include <Grid/algorithms/iterative/BlockConjugateGradient.h>
using namespace std;
using namespace Grid;
using namespace Grid::QCD;
int main (int argc, char ** argv)
{
typedef typename DomainWallFermionR::FermionField FermionField;
typedef typename DomainWallFermionR::ComplexField ComplexField;
typename DomainWallFermionR::ImplParams params;
const int Ls=4;
Grid_init(&argc,&argv);
std::vector<int> latt_size = GridDefaultLatt();
std::vector<int> simd_layout = GridDefaultSimd(Nd,vComplex::Nsimd());
std::vector<int> mpi_layout = GridDefaultMpi();
std::vector<int> mpi_split (mpi_layout.size(),1);
GridCartesian * UGrid = SpaceTimeGrid::makeFourDimGrid(GridDefaultLatt(),
GridDefaultSimd(Nd,vComplex::Nsimd()),
GridDefaultMpi());
GridCartesian * FGrid = SpaceTimeGrid::makeFiveDimGrid(Ls,UGrid);
GridRedBlackCartesian * rbGrid = SpaceTimeGrid::makeFourDimRedBlackGrid(UGrid);
GridRedBlackCartesian * FrbGrid = SpaceTimeGrid::makeFiveDimRedBlackGrid(Ls,UGrid);
int nrhs = UGrid->RankCount() ;
/////////////////////////////////////////////
// Split into 1^4 mpi communicators
/////////////////////////////////////////////
int me;
GridCartesian * SGrid = new GridCartesian(GridDefaultLatt(),
GridDefaultSimd(Nd,vComplex::Nsimd()),
mpi_split,
*UGrid,me);
GridCartesian * SFGrid = SpaceTimeGrid::makeFiveDimGrid(Ls,SGrid);
GridRedBlackCartesian * SrbGrid = SpaceTimeGrid::makeFourDimRedBlackGrid(SGrid);
GridRedBlackCartesian * SFrbGrid = SpaceTimeGrid::makeFiveDimRedBlackGrid(Ls,SGrid);
///////////////////////////////////////////////
// Set up the problem as a 4d spreadout job
///////////////////////////////////////////////
std::vector<int> seeds({1,2,3,4});
GridParallelRNG pRNG(UGrid ); pRNG.SeedFixedIntegers(seeds);
GridParallelRNG pRNG5(FGrid); pRNG5.SeedFixedIntegers(seeds);
std::vector<FermionField> src(nrhs,FGrid);
std::vector<FermionField> src_chk(nrhs,FGrid);
std::vector<FermionField> result(nrhs,FGrid);
FermionField tmp(FGrid);
std::vector<FermionField> src_e(nrhs,FrbGrid);
std::vector<FermionField> src_o(nrhs,FrbGrid);
for(int s=0;s<nrhs;s++) random(pRNG5,src[s]);
for(int s=0;s<nrhs;s++) result[s]=zero;
LatticeGaugeField Umu(UGrid); SU3::HotConfiguration(pRNG,Umu);
/////////////////
// MPI only sends
/////////////////
LatticeGaugeField s_Umu(SGrid);
FermionField s_src(SFGrid);
FermionField s_src_e(SFrbGrid);
FermionField s_src_o(SFrbGrid);
FermionField s_tmp(SFGrid);
FermionField s_res(SFGrid);
///////////////////////////////////////////////////////////////
// split the source out using MPI instead of I/O
///////////////////////////////////////////////////////////////
Grid_split (Umu,s_Umu);
Grid_split (src,s_src);
///////////////////////////////////////////////////////////////
// Check even odd cases
///////////////////////////////////////////////////////////////
for(int s=0;s<nrhs;s++){
pickCheckerboard(Odd , src_o[s], src[s]);
pickCheckerboard(Even, src_e[s], src[s]);
}
Grid_split (src_e,s_src_e);
Grid_split (src_o,s_src_o);
setCheckerboard(s_tmp, s_src_o);
setCheckerboard(s_tmp, s_src_e);
s_tmp = s_tmp - s_src;
std::cout << GridLogMessage<<" EvenOdd Difference " <<norm2(s_tmp)<<std::endl;
///////////////////////////////////////////////////////////////
// Set up N-solvers as trivially parallel
///////////////////////////////////////////////////////////////
RealD mass=0.01;
RealD M5=1.8;
DomainWallFermionR Dchk(Umu,*FGrid,*FrbGrid,*UGrid,*rbGrid,mass,M5);
DomainWallFermionR Ddwf(s_Umu,*SFGrid,*SFrbGrid,*SGrid,*SrbGrid,mass,M5);
std::cout << GridLogMessage << "****************************************************************** "<<std::endl;
std::cout << GridLogMessage << " Calling DWF CG "<<std::endl;
std::cout << GridLogMessage << "****************************************************************** "<<std::endl;
MdagMLinearOperator<DomainWallFermionR,FermionField> HermOp(Ddwf);
MdagMLinearOperator<DomainWallFermionR,FermionField> HermOpCk(Dchk);
ConjugateGradient<FermionField> CG((1.0e-8/(me+1)),10000);
s_res = zero;
CG(HermOp,s_src,s_res);
/////////////////////////////////////////////////////////////
// Report how long they all took
/////////////////////////////////////////////////////////////
std::vector<uint32_t> iterations(nrhs,0);
iterations[me] = CG.IterationsToComplete;
for(int n=0;n<nrhs;n++){
UGrid->GlobalSum(iterations[n]);
std::cout << GridLogMessage<<" Rank "<<n<<" "<< iterations[n]<<" CG iterations"<<std::endl;
}
/////////////////////////////////////////////////////////////
// Gather and residual check on the results
/////////////////////////////////////////////////////////////
std::cout << GridLogMessage<< "Unsplitting the result"<<std::endl;
Grid_unsplit(result,s_res);
std::cout << GridLogMessage<< "Checking the residuals"<<std::endl;
for(int n=0;n<nrhs;n++){
HermOpCk.HermOp(result[n],tmp); tmp = tmp - src[n];
std::cout << GridLogMessage<<" resid["<<n<<"] "<< norm2(tmp)<<std::endl;
}
Grid_finalize();
}

View File

@ -0,0 +1,157 @@
/*************************************************************************************
Grid physics library, www.github.com/paboyle/Grid
Source file: ./tests/Test_dwf_mrhs_cg.cc
Copyright (C) 2015
Author: Peter Boyle <paboyle@ph.ed.ac.uk>
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
See the full license in the file "LICENSE" in the top level distribution directory
*************************************************************************************/
/* END LEGAL */
#include <Grid/Grid.h>
#include <Grid/algorithms/iterative/BlockConjugateGradient.h>
using namespace std;
using namespace Grid;
using namespace Grid::QCD;
int main (int argc, char ** argv)
{
typedef typename DomainWallFermionR::FermionField FermionField;
typedef typename DomainWallFermionR::ComplexField ComplexField;
typename DomainWallFermionR::ImplParams params;
const int Ls=4;
Grid_init(&argc,&argv);
std::vector<int> latt_size = GridDefaultLatt();
std::vector<int> simd_layout = GridDefaultSimd(Nd,vComplex::Nsimd());
std::vector<int> mpi_layout = GridDefaultMpi();
std::vector<int> mpi_split (mpi_layout.size(),1);
GridCartesian * UGrid = SpaceTimeGrid::makeFourDimGrid(GridDefaultLatt(), GridDefaultSimd(Nd,vComplex::Nsimd()),GridDefaultMpi());
GridCartesian * FGrid = SpaceTimeGrid::makeFiveDimGrid(Ls,UGrid);
GridRedBlackCartesian * rbGrid = SpaceTimeGrid::makeFourDimRedBlackGrid(UGrid);
GridRedBlackCartesian * FrbGrid = SpaceTimeGrid::makeFiveDimRedBlackGrid(Ls,UGrid);
/////////////////////////////////////////////
// Split into 1^4 mpi communicators
/////////////////////////////////////////////
for(int i=0;i<argc;i++){
if(std::string(argv[i]) == "--split"){
for(int k=0;k<mpi_layout.size();k++){
std::stringstream ss;
ss << argv[i+1+k];
ss >> mpi_split[k];
}
break;
}
}
int nrhs = 1;
for(int i=0;i<mpi_layout.size();i++) nrhs *= (mpi_layout[i]/mpi_split[i]);
GridCartesian * SGrid = new GridCartesian(GridDefaultLatt(),
GridDefaultSimd(Nd,vComplex::Nsimd()),
mpi_split,
*UGrid);
GridCartesian * SFGrid = SpaceTimeGrid::makeFiveDimGrid(Ls,SGrid);
GridRedBlackCartesian * SrbGrid = SpaceTimeGrid::makeFourDimRedBlackGrid(SGrid);
GridRedBlackCartesian * SFrbGrid = SpaceTimeGrid::makeFiveDimRedBlackGrid(Ls,SGrid);
///////////////////////////////////////////////
// Set up the problem as a 4d spreadout job
///////////////////////////////////////////////
std::vector<int> seeds({1,2,3,4});
GridParallelRNG pRNG(UGrid ); pRNG.SeedFixedIntegers(seeds);
GridParallelRNG pRNG5(FGrid); pRNG5.SeedFixedIntegers(seeds);
std::vector<FermionField> src(nrhs,FGrid);
std::vector<FermionField> src_chk(nrhs,FGrid);
std::vector<FermionField> result(nrhs,FGrid);
FermionField tmp(FGrid);
for(int s=0;s<nrhs;s++) random(pRNG5,src[s]);
for(int s=0;s<nrhs;s++) result[s]=zero;
LatticeGaugeField Umu(UGrid); SU3::HotConfiguration(pRNG,Umu);
/////////////////
// MPI only sends
/////////////////
int me = UGrid->ThisRank();
LatticeGaugeField s_Umu(SGrid);
FermionField s_src(SFGrid);
FermionField s_tmp(SFGrid);
FermionField s_res(SFGrid);
///////////////////////////////////////////////////////////////
// split the source out using MPI instead of I/O
///////////////////////////////////////////////////////////////
Grid_split (Umu,s_Umu);
Grid_split (src,s_src);
///////////////////////////////////////////////////////////////
// Set up N-solvers as trivially parallel
///////////////////////////////////////////////////////////////
RealD mass=0.01;
RealD M5=1.8;
DomainWallFermionR Dchk(Umu,*FGrid,*FrbGrid,*UGrid,*rbGrid,mass,M5);
DomainWallFermionR Ddwf(s_Umu,*SFGrid,*SFrbGrid,*SGrid,*SrbGrid,mass,M5);
std::cout << GridLogMessage << "****************************************************************** "<<std::endl;
std::cout << GridLogMessage << " Calling DWF CG "<<std::endl;
std::cout << GridLogMessage << "****************************************************************** "<<std::endl;
MdagMLinearOperator<DomainWallFermionR,FermionField> HermOp(Ddwf);
MdagMLinearOperator<DomainWallFermionR,FermionField> HermOpCk(Dchk);
ConjugateGradient<FermionField> CG((1.0e-8/(me+1)),10000);
s_res = zero;
CG(HermOp,s_src,s_res);
/////////////////////////////////////////////////////////////
// Report how long they all took
/////////////////////////////////////////////////////////////
std::vector<uint32_t> iterations(nrhs,0);
iterations[me] = CG.IterationsToComplete;
for(int n=0;n<nrhs;n++){
UGrid->GlobalSum(iterations[n]);
std::cout << GridLogMessage<<" Rank "<<n<<" "<< iterations[n]<<" CG iterations"<<std::endl;
}
/////////////////////////////////////////////////////////////
// Gather and residual check on the results
/////////////////////////////////////////////////////////////
std::cout << GridLogMessage<< "Unsplitting the result"<<std::endl;
Grid_unsplit(result,s_res);
std::cout << GridLogMessage<< "Checking the residuals"<<std::endl;
for(int n=0;n<nrhs;n++){
HermOpCk.HermOp(result[n],tmp); tmp = tmp - src[n];
std::cout << GridLogMessage<<" resid["<<n<<"] "<< norm2(tmp)<<std::endl;
}
Grid_finalize();
}

View File

@ -76,7 +76,7 @@ int main (int argc, char ** argv)
RealD mass=0.003;
ImprovedStaggeredFermion5DR Ds(Umu,Umu,*FGrid,*FrbGrid,*UGrid,*UrbGrid,mass);
SchurDiagMooeeOperator<ImprovedStaggeredFermion5DR,FermionField> HermOp(Ds);
SchurStaggeredOperator<ImprovedStaggeredFermion5DR,FermionField> HermOp(Ds);
ConjugateGradient<FermionField> CG(1.0e-8,10000);
int blockDim = 0;
@ -88,7 +88,7 @@ int main (int argc, char ** argv)
std::cout << GridLogMessage << " Calling 4d CG "<<std::endl;
std::cout << GridLogMessage << "****************************************************************** "<<std::endl;
ImprovedStaggeredFermionR Ds4d(Umu,Umu,*UGrid,*UrbGrid,mass);
SchurDiagMooeeOperator<ImprovedStaggeredFermionR,FermionField> HermOp4d(Ds4d);
SchurStaggeredOperator<ImprovedStaggeredFermionR,FermionField> HermOp4d(Ds4d);
FermionField src4d(UGrid); random(pRNG,src4d);
FermionField src4d_o(UrbGrid); pickCheckerboard(Odd,src4d_o,src4d);
FermionField result4d_o(UrbGrid);

View File

@ -48,7 +48,6 @@ struct scal {
int main (int argc, char ** argv)
{
typedef typename ImprovedStaggeredFermionR::FermionField FermionField;
typedef typename ImprovedStaggeredFermionR::ComplexField ComplexField;
typename ImprovedStaggeredFermionR::ImplParams params;
Grid_init(&argc,&argv);
@ -79,7 +78,7 @@ int main (int argc, char ** argv)
pickCheckerboard(Odd,src_o,src);
res_o=zero;
SchurDiagMooeeOperator<ImprovedStaggeredFermionR,FermionField> HermOpEO(Ds);
SchurStaggeredOperator<ImprovedStaggeredFermionR,FermionField> HermOpEO(Ds);
ConjugateGradient<FermionField> CG(1.0e-8,10000);
CG(HermOpEO,src_o,res_o);

View File

@ -0,0 +1,76 @@
/*************************************************************************************
Grid physics library, www.github.com/paboyle/Grid
Source file: ./tests/Test_wilson_cg_schur.cc
Copyright (C) 2015
Author: Peter Boyle <paboyle@ph.ed.ac.uk>
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
See the full license in the file "LICENSE" in the top level distribution directory
*************************************************************************************/
/* END LEGAL */
#include <Grid/Grid.h>
using namespace std;
using namespace Grid;
using namespace Grid::QCD;
template<class d>
struct scal {
d internal;
};
Gamma::Algebra Gmu [] = {
Gamma::Algebra::GammaX,
Gamma::Algebra::GammaY,
Gamma::Algebra::GammaZ,
Gamma::Algebra::GammaT
};
int main (int argc, char ** argv)
{
typedef typename ImprovedStaggeredFermionR::FermionField FermionField;
typename ImprovedStaggeredFermionR::ImplParams params;
Grid_init(&argc,&argv);
std::vector<int> latt_size = GridDefaultLatt();
std::vector<int> simd_layout = GridDefaultSimd(Nd,vComplex::Nsimd());
std::vector<int> mpi_layout = GridDefaultMpi();
GridCartesian Grid(latt_size,simd_layout,mpi_layout);
GridRedBlackCartesian RBGrid(&Grid);
std::vector<int> seeds({1,2,3,4});
GridParallelRNG pRNG(&Grid); pRNG.SeedFixedIntegers(seeds);
LatticeGaugeField Umu(&Grid); SU3::HotConfiguration(pRNG,Umu);
FermionField src(&Grid); random(pRNG,src);
FermionField result(&Grid); result=zero;
FermionField resid(&Grid);
RealD mass=0.1;
ImprovedStaggeredFermionR Ds(Umu,Umu,Grid,RBGrid,mass);
ConjugateGradient<FermionField> CG(1.0e-8,10000);
SchurRedBlackStaggeredSolve<FermionField> SchurSolver(CG);
SchurSolver(Ds,src,result);
Grid_finalize();
}