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0.8.2
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f37ed4958b | |||
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90dffc73c8 | |||
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04f92ccddf | |||
3b2d805398 | |||
6fec507bef | |||
219b3bd34f | |||
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38328100c9 | |||
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fa4eeb28c4 | |||
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26f14d7dd7 | |||
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888988ad37 | |||
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26ebe41fef | |||
1e496fee74 | |||
9f755e0379 | |||
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483fd3cfa1 | |||
85516e9c7c | |||
0c006fbfaa | |||
54c10a42cc | |||
ef0fe2bcc1 |
27
.gitignore
vendored
27
.gitignore
vendored
@ -83,6 +83,7 @@ ltmain.sh
|
||||
.Trashes
|
||||
ehthumbs.db
|
||||
Thumbs.db
|
||||
.dirstamp
|
||||
|
||||
# build directory #
|
||||
###################
|
||||
@ -97,11 +98,8 @@ build.sh
|
||||
|
||||
# Eigen source #
|
||||
################
|
||||
lib/Eigen/*
|
||||
|
||||
# FFTW source #
|
||||
################
|
||||
lib/fftw/*
|
||||
Grid/Eigen
|
||||
Eigen/*
|
||||
|
||||
# libtool macros #
|
||||
##################
|
||||
@ -112,21 +110,8 @@ m4/libtool.m4
|
||||
################
|
||||
gh-pages/
|
||||
|
||||
# Buck files #
|
||||
##############
|
||||
.buck*
|
||||
buck-out
|
||||
BUCK
|
||||
make-bin-BUCK.sh
|
||||
|
||||
# generated sources #
|
||||
#####################
|
||||
lib/qcd/spin/gamma-gen/*.h
|
||||
lib/qcd/spin/gamma-gen/*.cc
|
||||
lib/version.h
|
||||
|
||||
# vs code editor files #
|
||||
########################
|
||||
.vscode/
|
||||
.vscode/settings.json
|
||||
settings.json
|
||||
Grid/qcd/spin/gamma-gen/*.h
|
||||
Grid/qcd/spin/gamma-gen/*.cc
|
||||
Grid/util/Version.h
|
||||
|
15
.travis.yml
15
.travis.yml
@ -9,6 +9,11 @@ matrix:
|
||||
- os: osx
|
||||
osx_image: xcode8.3
|
||||
compiler: clang
|
||||
env: PREC=single
|
||||
- os: osx
|
||||
osx_image: xcode8.3
|
||||
compiler: clang
|
||||
env: PREC=double
|
||||
|
||||
before_install:
|
||||
- export GRIDDIR=`pwd`
|
||||
@ -16,7 +21,7 @@ before_install:
|
||||
- if [[ "$TRAVIS_OS_NAME" == "linux" ]] && [[ "$CC" == "clang" ]]; then export PATH="${GRIDDIR}/clang/bin:${PATH}"; fi
|
||||
- if [[ "$TRAVIS_OS_NAME" == "linux" ]] && [[ "$CC" == "clang" ]]; then export LD_LIBRARY_PATH="${GRIDDIR}/clang/lib:${LD_LIBRARY_PATH}"; fi
|
||||
- if [[ "$TRAVIS_OS_NAME" == "osx" ]]; then brew update; fi
|
||||
- if [[ "$TRAVIS_OS_NAME" == "osx" ]]; then brew install libmpc; fi
|
||||
- if [[ "$TRAVIS_OS_NAME" == "osx" ]]; then brew install libmpc openssl; fi
|
||||
|
||||
install:
|
||||
- export CWD=`pwd`
|
||||
@ -33,6 +38,7 @@ install:
|
||||
- which $CXX
|
||||
- $CXX --version
|
||||
- if [[ "$TRAVIS_OS_NAME" == "osx" ]]; then export LDFLAGS='-L/usr/local/lib'; fi
|
||||
- if [[ "$TRAVIS_OS_NAME" == "osx" ]]; then export EXTRACONF='--with-openssl=/usr/local/opt/openssl'; fi
|
||||
|
||||
script:
|
||||
- ./bootstrap.sh
|
||||
@ -49,12 +55,7 @@ script:
|
||||
- make -j4
|
||||
- make install
|
||||
- cd $CWD/build
|
||||
- ../configure --enable-precision=single --enable-simd=SSE4 --enable-comms=none --with-lime=$CWD/build/lime/install
|
||||
- ../configure --enable-precision=$PREC --enable-simd=SSE4 --enable-comms=none --with-lime=$CWD/build/lime/install ${EXTRACONF}
|
||||
- make -j4
|
||||
- ./benchmarks/Benchmark_dwf --threads 1 --debug-signals
|
||||
- echo make clean
|
||||
- ../configure --enable-precision=double --enable-simd=SSE4 --enable-comms=none --with-lime=$CWD/build/lime/install
|
||||
- make -j4
|
||||
- ./benchmarks/Benchmark_dwf --threads 1 --debug-signals
|
||||
- make check
|
||||
|
||||
|
@ -0,0 +1,5 @@
|
||||
Version : 0.8.0
|
||||
|
||||
- Clang 3.5 and above, ICPC v16 and above, GCC 6.3 and above recommended
|
||||
- MPI and MPI3 comms optimisations for KNL and OPA finished
|
||||
- Half precision comms
|
||||
|
@ -42,6 +42,7 @@ Author: paboyle <paboyle@ph.ed.ac.uk>
|
||||
#include <Grid/GridQCDcore.h>
|
||||
#include <Grid/qcd/action/Action.h>
|
||||
#include <Grid/qcd/utils/GaugeFix.h>
|
||||
#include <Grid/qcd/utils/CovariantSmearing.h>
|
||||
#include <Grid/qcd/smearing/Smearing.h>
|
||||
#include <Grid/parallelIO/MetaData.h>
|
||||
#include <Grid/qcd/hmc/HMC_aggregate.h>
|
@ -48,6 +48,7 @@ Author: paboyle <paboyle@ph.ed.ac.uk>
|
||||
#include <Grid/serialisation/Serialisation.h>
|
||||
#include <Grid/threads/Threads.h>
|
||||
#include <Grid/util/Util.h>
|
||||
#include <Grid/util/Sha.h>
|
||||
#include <Grid/communicator/Communicator.h>
|
||||
#include <Grid/cartesian/Cartesian.h>
|
||||
#include <Grid/tensors/Tensors.h>
|
@ -1,4 +1,9 @@
|
||||
#pragma once
|
||||
// Force Eigen to use MKL if Grid has been configured with --enable-mkl
|
||||
#ifdef USE_MKL
|
||||
#define EIGEN_USE_MKL_ALL
|
||||
#endif
|
||||
|
||||
#if defined __GNUC__
|
||||
#pragma GCC diagnostic push
|
||||
#pragma GCC diagnostic ignored "-Wdeprecated-declarations"
|
@ -21,6 +21,32 @@ if BUILD_HDF5
|
||||
extra_headers+=serialisation/Hdf5Type.h
|
||||
endif
|
||||
|
||||
all: version-cache
|
||||
|
||||
version-cache:
|
||||
@if [ `git status --porcelain | grep -v '??' | wc -l` -gt 0 ]; then\
|
||||
a="uncommited changes";\
|
||||
else\
|
||||
a="clean";\
|
||||
fi;\
|
||||
echo "`git log -n 1 --format=format:"#define GITHASH \\"%H:%d $$a\\"%n" HEAD`" > vertmp;\
|
||||
if [ -e version-cache ]; then\
|
||||
d=`diff vertmp version-cache`;\
|
||||
if [ "$${d}" != "" ]; then\
|
||||
mv vertmp version-cache;\
|
||||
rm -f Version.h;\
|
||||
fi;\
|
||||
else\
|
||||
mv vertmp version-cache;\
|
||||
rm -f Version.h;\
|
||||
fi;\
|
||||
rm -f vertmp
|
||||
|
||||
Version.h:
|
||||
cp version-cache Version.h
|
||||
|
||||
.PHONY: version-cache
|
||||
|
||||
#
|
||||
# Libraries
|
||||
#
|
||||
@ -30,8 +56,8 @@ include Eigen.inc
|
||||
lib_LIBRARIES = libGrid.a
|
||||
|
||||
CCFILES += $(extra_sources)
|
||||
HFILES += $(extra_headers)
|
||||
HFILES += $(extra_headers) Config.h Version.h
|
||||
|
||||
libGrid_a_SOURCES = $(CCFILES)
|
||||
libGrid_adir = $(pkgincludedir)
|
||||
nobase_dist_pkginclude_HEADERS = $(HFILES) $(eigen_files) Config.h
|
||||
libGrid_adir = $(includedir)/Grid
|
||||
nobase_dist_pkginclude_HEADERS = $(HFILES) $(eigen_files) $(eigen_unsupp_files)
|
@ -48,14 +48,16 @@ Author: Peter Boyle <paboyle@ph.ed.ac.uk>
|
||||
#include <Grid/algorithms/iterative/ConjugateGradientMixedPrec.h>
|
||||
#include <Grid/algorithms/iterative/BlockConjugateGradient.h>
|
||||
#include <Grid/algorithms/iterative/ConjugateGradientReliableUpdate.h>
|
||||
#include <Grid/algorithms/iterative/MinimalResidual.h>
|
||||
#include <Grid/algorithms/iterative/GeneralisedMinimalResidual.h>
|
||||
#include <Grid/algorithms/iterative/CommunicationAvoidingGeneralisedMinimalResidual.h>
|
||||
#include <Grid/algorithms/iterative/FlexibleGeneralisedMinimalResidual.h>
|
||||
#include <Grid/algorithms/iterative/FlexibleCommunicationAvoidingGeneralisedMinimalResidual.h>
|
||||
#include <Grid/algorithms/iterative/MixedPrecisionFlexibleGeneralisedMinimalResidual.h>
|
||||
#include <Grid/algorithms/iterative/ImplicitlyRestartedLanczos.h>
|
||||
#include <Grid/algorithms/iterative/PowerMethod.h>
|
||||
|
||||
#include <Grid/algorithms/CoarsenedMatrix.h>
|
||||
#include <Grid/algorithms/FFT.h>
|
||||
|
||||
// EigCg
|
||||
// Pcg
|
||||
// Hdcg
|
||||
// GCR
|
||||
// etc..
|
||||
|
||||
#endif
|
@ -211,6 +211,7 @@ namespace Grid {
|
||||
|
||||
for(int b=0;b<nn;b++){
|
||||
|
||||
subspace[b] = zero;
|
||||
gaussian(RNG,noise);
|
||||
scale = std::pow(norm2(noise),-0.5);
|
||||
noise=noise*scale;
|
||||
@ -295,13 +296,58 @@ namespace Grid {
|
||||
return norm2(out);
|
||||
};
|
||||
|
||||
RealD Mdag (const CoarseVector &in, CoarseVector &out){
|
||||
return M(in,out);
|
||||
RealD Mdag (const CoarseVector &in, CoarseVector &out){
|
||||
// // corresponds to Petrov-Galerkin coarsening
|
||||
// return M(in,out);
|
||||
|
||||
// corresponds to Galerkin coarsening
|
||||
CoarseVector tmp(Grid());
|
||||
G5C(tmp, in);
|
||||
M(tmp, out);
|
||||
G5C(out, out);
|
||||
return norm2(out);
|
||||
};
|
||||
|
||||
// Defer support for further coarsening for now
|
||||
void Mdiag (const CoarseVector &in, CoarseVector &out){};
|
||||
void Mdir (const CoarseVector &in, CoarseVector &out,int dir, int disp){};
|
||||
void Mdir(const CoarseVector &in, CoarseVector &out, int dir, int disp){
|
||||
|
||||
conformable(_grid,in._grid);
|
||||
conformable(in._grid,out._grid);
|
||||
|
||||
SimpleCompressor<siteVector> compressor;
|
||||
Stencil.HaloExchange(in,compressor);
|
||||
|
||||
auto point = [dir, disp](){
|
||||
if(dir == 0 and disp == 0)
|
||||
return 8;
|
||||
else
|
||||
return (4 * dir + 1 - disp) / 2;
|
||||
}();
|
||||
|
||||
parallel_for(int ss=0;ss<Grid()->oSites();ss++){
|
||||
siteVector res = zero;
|
||||
siteVector nbr;
|
||||
int ptype;
|
||||
StencilEntry *SE;
|
||||
|
||||
SE=Stencil.GetEntry(ptype,point,ss);
|
||||
|
||||
if(SE->_is_local&&SE->_permute) {
|
||||
permute(nbr,in._odata[SE->_offset],ptype);
|
||||
} else if(SE->_is_local) {
|
||||
nbr = in._odata[SE->_offset];
|
||||
} else {
|
||||
nbr = Stencil.CommBuf()[SE->_offset];
|
||||
}
|
||||
|
||||
res = res + A[point]._odata[ss]*nbr;
|
||||
|
||||
vstream(out._odata[ss],res);
|
||||
}
|
||||
};
|
||||
|
||||
void Mdiag(const CoarseVector &in, CoarseVector &out){
|
||||
Mdir(in, out, 0, 0); // use the self coupling (= last) point of the stencil
|
||||
};
|
||||
|
||||
CoarsenedMatrix(GridCartesian &CoarseGrid) :
|
||||
|
||||
@ -417,7 +463,7 @@ namespace Grid {
|
||||
std::cout<<GridLogMessage<<"Computed Coarse Operator"<<std::endl;
|
||||
#endif
|
||||
// ForceHermitian();
|
||||
AssertHermitian();
|
||||
// AssertHermitian();
|
||||
// ForceDiagonal();
|
||||
}
|
||||
void ForceDiagonal(void) {
|
@ -178,7 +178,7 @@ namespace Grid {
|
||||
//////////////////////////////////////////////////////////
|
||||
|
||||
template<class Field>
|
||||
class SchurOperatorBase : public LinearOperatorBase<Field> {
|
||||
class SchurOperatorBase : public LinearOperatorBase<Field> {
|
||||
public:
|
||||
virtual RealD Mpc (const Field &in, Field &out) =0;
|
||||
virtual RealD MpcDag (const Field &in, Field &out) =0;
|
||||
@ -211,10 +211,9 @@ namespace Grid {
|
||||
}
|
||||
};
|
||||
template<class Matrix,class Field>
|
||||
class SchurDiagMooeeOperator : public SchurOperatorBase<Field> {
|
||||
protected:
|
||||
Matrix &_Mat;
|
||||
class SchurDiagMooeeOperator : public SchurOperatorBase<Field> {
|
||||
public:
|
||||
Matrix &_Mat;
|
||||
SchurDiagMooeeOperator (Matrix &Mat): _Mat(Mat){};
|
||||
virtual RealD Mpc (const Field &in, Field &out) {
|
||||
Field tmp(in._grid);
|
||||
@ -380,6 +379,12 @@ namespace Grid {
|
||||
template<class Field> class OperatorFunction {
|
||||
public:
|
||||
virtual void operator() (LinearOperatorBase<Field> &Linop, const Field &in, Field &out) = 0;
|
||||
virtual void operator() (LinearOperatorBase<Field> &Linop, const std::vector<Field> &in,std::vector<Field> &out) {
|
||||
assert(in.size()==out.size());
|
||||
for(int k=0;k<in.size();k++){
|
||||
(*this)(Linop,in[k],out[k]);
|
||||
}
|
||||
};
|
||||
};
|
||||
|
||||
template<class Field> class LinearFunction {
|
||||
@ -421,7 +426,7 @@ namespace Grid {
|
||||
// Hermitian operator Linear function and operator function
|
||||
////////////////////////////////////////////////////////////////////////////////////////////
|
||||
template<class Field>
|
||||
class HermOpOperatorFunction : public OperatorFunction<Field> {
|
||||
class HermOpOperatorFunction : public OperatorFunction<Field> {
|
||||
void operator() (LinearOperatorBase<Field> &Linop, const Field &in, Field &out) {
|
||||
Linop.HermOp(in,out);
|
||||
};
|
@ -55,6 +55,14 @@ namespace Grid {
|
||||
template<class Field> class CheckerBoardedSparseMatrixBase : public SparseMatrixBase<Field> {
|
||||
public:
|
||||
virtual GridBase *RedBlackGrid(void)=0;
|
||||
|
||||
//////////////////////////////////////////////////////////////////////
|
||||
// Query the even even properties to make algorithmic decisions
|
||||
//////////////////////////////////////////////////////////////////////
|
||||
virtual RealD Mass(void) { return 0.0; };
|
||||
virtual int ConstEE(void) { return 1; }; // Disable assumptions unless overridden
|
||||
virtual int isTrivialEE(void) { return 0; }; // by a derived class that knows better
|
||||
|
||||
// half checkerboard operaions
|
||||
virtual void Meooe (const Field &in, Field &out)=0;
|
||||
virtual void Mooee (const Field &in, Field &out)=0;
|
@ -33,7 +33,7 @@ directory
|
||||
|
||||
namespace Grid {
|
||||
|
||||
enum BlockCGtype { BlockCG, BlockCGrQ, CGmultiRHS };
|
||||
enum BlockCGtype { BlockCG, BlockCGrQ, CGmultiRHS, BlockCGVec, BlockCGrQVec };
|
||||
|
||||
//////////////////////////////////////////////////////////////////////////
|
||||
// Block conjugate gradient. Dimension zero should be the block direction
|
||||
@ -42,7 +42,6 @@ template <class Field>
|
||||
class BlockConjugateGradient : public OperatorFunction<Field> {
|
||||
public:
|
||||
|
||||
|
||||
typedef typename Field::scalar_type scomplex;
|
||||
|
||||
int blockDim ;
|
||||
@ -54,21 +53,15 @@ class BlockConjugateGradient : public OperatorFunction<Field> {
|
||||
RealD Tolerance;
|
||||
Integer MaxIterations;
|
||||
Integer IterationsToComplete; //Number of iterations the CG took to finish. Filled in upon completion
|
||||
Integer PrintInterval; //GridLogMessages or Iterative
|
||||
|
||||
BlockConjugateGradient(BlockCGtype cgtype,int _Orthog,RealD tol, Integer maxit, bool err_on_no_conv = true)
|
||||
: Tolerance(tol), CGtype(cgtype), blockDim(_Orthog), MaxIterations(maxit), ErrorOnNoConverge(err_on_no_conv)
|
||||
: Tolerance(tol), CGtype(cgtype), blockDim(_Orthog), MaxIterations(maxit), ErrorOnNoConverge(err_on_no_conv),PrintInterval(100)
|
||||
{};
|
||||
|
||||
////////////////////////////////////////////////////////////////////////////////////////////////////
|
||||
// Thin QR factorisation (google it)
|
||||
////////////////////////////////////////////////////////////////////////////////////////////////////
|
||||
void ThinQRfact (Eigen::MatrixXcd &m_rr,
|
||||
Eigen::MatrixXcd &C,
|
||||
Eigen::MatrixXcd &Cinv,
|
||||
Field & Q,
|
||||
const Field & R)
|
||||
{
|
||||
int Orthog = blockDim; // First dimension is block dim; this is an assumption
|
||||
////////////////////////////////////////////////////////////////////////////////////////////////////
|
||||
//Dimensions
|
||||
// R_{ferm x Nblock} = Q_{ferm x Nblock} x C_{Nblock x Nblock} -> ferm x Nblock
|
||||
@ -85,22 +78,20 @@ void ThinQRfact (Eigen::MatrixXcd &m_rr,
|
||||
// Cdag C = Rdag R ; passes.
|
||||
// QdagQ = 1 ; passes
|
||||
////////////////////////////////////////////////////////////////////////////////////////////////////
|
||||
void ThinQRfact (Eigen::MatrixXcd &m_rr,
|
||||
Eigen::MatrixXcd &C,
|
||||
Eigen::MatrixXcd &Cinv,
|
||||
Field & Q,
|
||||
const Field & R)
|
||||
{
|
||||
int Orthog = blockDim; // First dimension is block dim; this is an assumption
|
||||
sliceInnerProductMatrix(m_rr,R,R,Orthog);
|
||||
|
||||
// Force manifest hermitian to avoid rounding related
|
||||
m_rr = 0.5*(m_rr+m_rr.adjoint());
|
||||
|
||||
#if 0
|
||||
std::cout << " Calling Cholesky ldlt on m_rr " << m_rr <<std::endl;
|
||||
Eigen::MatrixXcd L_ldlt = m_rr.ldlt().matrixL();
|
||||
std::cout << " Called Cholesky ldlt on m_rr " << L_ldlt <<std::endl;
|
||||
auto D_ldlt = m_rr.ldlt().vectorD();
|
||||
std::cout << " Called Cholesky ldlt on m_rr " << D_ldlt <<std::endl;
|
||||
#endif
|
||||
|
||||
// std::cout << " Calling Cholesky llt on m_rr " <<std::endl;
|
||||
Eigen::MatrixXcd L = m_rr.llt().matrixL();
|
||||
// std::cout << " Called Cholesky llt on m_rr " << L <<std::endl;
|
||||
|
||||
C = L.adjoint();
|
||||
Cinv = C.inverse();
|
||||
////////////////////////////////////////////////////////////////////////////////////////////////////
|
||||
@ -112,6 +103,25 @@ void ThinQRfact (Eigen::MatrixXcd &m_rr,
|
||||
////////////////////////////////////////////////////////////////////////////////////////////////////
|
||||
sliceMulMatrix(Q,Cinv,R,Orthog);
|
||||
}
|
||||
// see comments above
|
||||
void ThinQRfact (Eigen::MatrixXcd &m_rr,
|
||||
Eigen::MatrixXcd &C,
|
||||
Eigen::MatrixXcd &Cinv,
|
||||
std::vector<Field> & Q,
|
||||
const std::vector<Field> & R)
|
||||
{
|
||||
InnerProductMatrix(m_rr,R,R);
|
||||
|
||||
m_rr = 0.5*(m_rr+m_rr.adjoint());
|
||||
|
||||
Eigen::MatrixXcd L = m_rr.llt().matrixL();
|
||||
|
||||
C = L.adjoint();
|
||||
Cinv = C.inverse();
|
||||
|
||||
MulMatrix(Q,Cinv,R);
|
||||
}
|
||||
|
||||
////////////////////////////////////////////////////////////////////////////////////////////////////
|
||||
// Call one of several implementations
|
||||
////////////////////////////////////////////////////////////////////////////////////////////////////
|
||||
@ -119,14 +129,20 @@ void operator()(LinearOperatorBase<Field> &Linop, const Field &Src, Field &Psi)
|
||||
{
|
||||
if ( CGtype == BlockCGrQ ) {
|
||||
BlockCGrQsolve(Linop,Src,Psi);
|
||||
} else if (CGtype == BlockCG ) {
|
||||
BlockCGsolve(Linop,Src,Psi);
|
||||
} else if (CGtype == CGmultiRHS ) {
|
||||
CGmultiRHSsolve(Linop,Src,Psi);
|
||||
} else {
|
||||
assert(0);
|
||||
}
|
||||
}
|
||||
virtual void operator()(LinearOperatorBase<Field> &Linop, const std::vector<Field> &Src, std::vector<Field> &Psi)
|
||||
{
|
||||
if ( CGtype == BlockCGrQVec ) {
|
||||
BlockCGrQsolveVec(Linop,Src,Psi);
|
||||
} else {
|
||||
assert(0);
|
||||
}
|
||||
}
|
||||
|
||||
////////////////////////////////////////////////////////////////////////////
|
||||
// BlockCGrQ implementation:
|
||||
@ -139,7 +155,8 @@ void BlockCGrQsolve(LinearOperatorBase<Field> &Linop, const Field &B, Field &X)
|
||||
{
|
||||
int Orthog = blockDim; // First dimension is block dim; this is an assumption
|
||||
Nblock = B._grid->_fdimensions[Orthog];
|
||||
|
||||
/* FAKE */
|
||||
Nblock=8;
|
||||
std::cout<<GridLogMessage<<" Block Conjugate Gradient : Orthog "<<Orthog<<" Nblock "<<Nblock<<std::endl;
|
||||
|
||||
X.checkerboard = B.checkerboard;
|
||||
@ -202,15 +219,10 @@ void BlockCGrQsolve(LinearOperatorBase<Field> &Linop, const Field &B, Field &X)
|
||||
std::cout << GridLogMessage<<"BlockCGrQ algorithm initialisation " <<std::endl;
|
||||
|
||||
//1. QC = R = B-AX, D = Q ; QC => Thin QR factorisation (google it)
|
||||
|
||||
Linop.HermOp(X, AD);
|
||||
tmp = B - AD;
|
||||
//std::cout << GridLogMessage << " initial tmp " << norm2(tmp)<< std::endl;
|
||||
|
||||
ThinQRfact (m_rr, m_C, m_Cinv, Q, tmp);
|
||||
//std::cout << GridLogMessage << " initial Q " << norm2(Q)<< std::endl;
|
||||
//std::cout << GridLogMessage << " m_rr " << m_rr<<std::endl;
|
||||
//std::cout << GridLogMessage << " m_C " << m_C<<std::endl;
|
||||
//std::cout << GridLogMessage << " m_Cinv " << m_Cinv<<std::endl;
|
||||
D=Q;
|
||||
|
||||
std::cout << GridLogMessage<<"BlockCGrQ computed initial residual and QR fact " <<std::endl;
|
||||
@ -232,14 +244,12 @@ void BlockCGrQsolve(LinearOperatorBase<Field> &Linop, const Field &B, Field &X)
|
||||
MatrixTimer.Start();
|
||||
Linop.HermOp(D, Z);
|
||||
MatrixTimer.Stop();
|
||||
//std::cout << GridLogMessage << " norm2 Z " <<norm2(Z)<<std::endl;
|
||||
|
||||
//4. M = [D^dag Z]^{-1}
|
||||
sliceInnerTimer.Start();
|
||||
sliceInnerProductMatrix(m_DZ,D,Z,Orthog);
|
||||
sliceInnerTimer.Stop();
|
||||
m_M = m_DZ.inverse();
|
||||
//std::cout << GridLogMessage << " m_DZ " <<m_DZ<<std::endl;
|
||||
|
||||
//5. X = X + D MC
|
||||
m_tmp = m_M * m_C;
|
||||
@ -257,6 +267,7 @@ void BlockCGrQsolve(LinearOperatorBase<Field> &Linop, const Field &B, Field &X)
|
||||
|
||||
//7. D = Q + D S^dag
|
||||
m_tmp = m_S.adjoint();
|
||||
|
||||
sliceMaddTimer.Start();
|
||||
sliceMaddMatrix(D,m_tmp,D,Q,Orthog);
|
||||
sliceMaddTimer.Stop();
|
||||
@ -317,152 +328,6 @@ void BlockCGrQsolve(LinearOperatorBase<Field> &Linop, const Field &B, Field &X)
|
||||
IterationsToComplete = k;
|
||||
}
|
||||
//////////////////////////////////////////////////////////////////////////
|
||||
// Block conjugate gradient; Original O'Leary Dimension zero should be the block direction
|
||||
//////////////////////////////////////////////////////////////////////////
|
||||
void BlockCGsolve(LinearOperatorBase<Field> &Linop, const Field &Src, Field &Psi)
|
||||
{
|
||||
int Orthog = blockDim; // First dimension is block dim; this is an assumption
|
||||
Nblock = Src._grid->_fdimensions[Orthog];
|
||||
|
||||
std::cout<<GridLogMessage<<" Block Conjugate Gradient : Orthog "<<Orthog<<" Nblock "<<Nblock<<std::endl;
|
||||
|
||||
Psi.checkerboard = Src.checkerboard;
|
||||
conformable(Psi, Src);
|
||||
|
||||
Field P(Src);
|
||||
Field AP(Src);
|
||||
Field R(Src);
|
||||
|
||||
Eigen::MatrixXcd m_pAp = Eigen::MatrixXcd::Identity(Nblock,Nblock);
|
||||
Eigen::MatrixXcd m_pAp_inv= Eigen::MatrixXcd::Identity(Nblock,Nblock);
|
||||
Eigen::MatrixXcd m_rr = Eigen::MatrixXcd::Zero(Nblock,Nblock);
|
||||
Eigen::MatrixXcd m_rr_inv = Eigen::MatrixXcd::Zero(Nblock,Nblock);
|
||||
|
||||
Eigen::MatrixXcd m_alpha = Eigen::MatrixXcd::Zero(Nblock,Nblock);
|
||||
Eigen::MatrixXcd m_beta = Eigen::MatrixXcd::Zero(Nblock,Nblock);
|
||||
|
||||
// Initial residual computation & set up
|
||||
std::vector<RealD> residuals(Nblock);
|
||||
std::vector<RealD> ssq(Nblock);
|
||||
|
||||
sliceNorm(ssq,Src,Orthog);
|
||||
RealD sssum=0;
|
||||
for(int b=0;b<Nblock;b++) sssum+=ssq[b];
|
||||
|
||||
sliceNorm(residuals,Src,Orthog);
|
||||
for(int b=0;b<Nblock;b++){ assert(std::isnan(residuals[b])==0); }
|
||||
|
||||
sliceNorm(residuals,Psi,Orthog);
|
||||
for(int b=0;b<Nblock;b++){ assert(std::isnan(residuals[b])==0); }
|
||||
|
||||
// Initial search dir is guess
|
||||
Linop.HermOp(Psi, AP);
|
||||
|
||||
|
||||
/************************************************************************
|
||||
* Block conjugate gradient (Stephen Pickles, thesis 1995, pp 71, O Leary 1980)
|
||||
************************************************************************
|
||||
* O'Leary : R = B - A X
|
||||
* O'Leary : P = M R ; preconditioner M = 1
|
||||
* O'Leary : alpha = PAP^{-1} RMR
|
||||
* O'Leary : beta = RMR^{-1}_old RMR_new
|
||||
* O'Leary : X=X+Palpha
|
||||
* O'Leary : R_new=R_old-AP alpha
|
||||
* O'Leary : P=MR_new+P beta
|
||||
*/
|
||||
|
||||
R = Src - AP;
|
||||
P = R;
|
||||
sliceInnerProductMatrix(m_rr,R,R,Orthog);
|
||||
|
||||
GridStopWatch sliceInnerTimer;
|
||||
GridStopWatch sliceMaddTimer;
|
||||
GridStopWatch MatrixTimer;
|
||||
GridStopWatch SolverTimer;
|
||||
SolverTimer.Start();
|
||||
|
||||
int k;
|
||||
for (k = 1; k <= MaxIterations; k++) {
|
||||
|
||||
RealD rrsum=0;
|
||||
for(int b=0;b<Nblock;b++) rrsum+=real(m_rr(b,b));
|
||||
|
||||
std::cout << GridLogIterative << "\titeration "<<k<<" rr_sum "<<rrsum<<" ssq_sum "<< sssum
|
||||
<<" / "<<std::sqrt(rrsum/sssum) <<std::endl;
|
||||
|
||||
MatrixTimer.Start();
|
||||
Linop.HermOp(P, AP);
|
||||
MatrixTimer.Stop();
|
||||
|
||||
// Alpha
|
||||
sliceInnerTimer.Start();
|
||||
sliceInnerProductMatrix(m_pAp,P,AP,Orthog);
|
||||
sliceInnerTimer.Stop();
|
||||
m_pAp_inv = m_pAp.inverse();
|
||||
m_alpha = m_pAp_inv * m_rr ;
|
||||
|
||||
// Psi, R update
|
||||
sliceMaddTimer.Start();
|
||||
sliceMaddMatrix(Psi,m_alpha, P,Psi,Orthog); // add alpha * P to psi
|
||||
sliceMaddMatrix(R ,m_alpha,AP, R,Orthog,-1.0);// sub alpha * AP to resid
|
||||
sliceMaddTimer.Stop();
|
||||
|
||||
// Beta
|
||||
m_rr_inv = m_rr.inverse();
|
||||
sliceInnerTimer.Start();
|
||||
sliceInnerProductMatrix(m_rr,R,R,Orthog);
|
||||
sliceInnerTimer.Stop();
|
||||
m_beta = m_rr_inv *m_rr;
|
||||
|
||||
// Search update
|
||||
sliceMaddTimer.Start();
|
||||
sliceMaddMatrix(AP,m_beta,P,R,Orthog);
|
||||
sliceMaddTimer.Stop();
|
||||
P= AP;
|
||||
|
||||
/*********************
|
||||
* convergence monitor
|
||||
*********************
|
||||
*/
|
||||
RealD max_resid=0;
|
||||
RealD rr;
|
||||
for(int b=0;b<Nblock;b++){
|
||||
rr = real(m_rr(b,b))/ssq[b];
|
||||
if ( rr > max_resid ) max_resid = rr;
|
||||
}
|
||||
|
||||
if ( max_resid < Tolerance*Tolerance ) {
|
||||
|
||||
SolverTimer.Stop();
|
||||
|
||||
std::cout << GridLogMessage<<"BlockCG converged in "<<k<<" iterations"<<std::endl;
|
||||
for(int b=0;b<Nblock;b++){
|
||||
std::cout << GridLogMessage<< "\t\tblock "<<b<<" computed resid "
|
||||
<< std::sqrt(real(m_rr(b,b))/ssq[b])<<std::endl;
|
||||
}
|
||||
std::cout << GridLogMessage<<"\tMax residual is "<<std::sqrt(max_resid)<<std::endl;
|
||||
|
||||
Linop.HermOp(Psi, AP);
|
||||
AP = AP-Src;
|
||||
std::cout << GridLogMessage <<"\t True residual is " << std::sqrt(norm2(AP)/norm2(Src)) <<std::endl;
|
||||
|
||||
std::cout << GridLogMessage << "Time Breakdown "<<std::endl;
|
||||
std::cout << GridLogMessage << "\tElapsed " << SolverTimer.Elapsed() <<std::endl;
|
||||
std::cout << GridLogMessage << "\tMatrix " << MatrixTimer.Elapsed() <<std::endl;
|
||||
std::cout << GridLogMessage << "\tInnerProd " << sliceInnerTimer.Elapsed() <<std::endl;
|
||||
std::cout << GridLogMessage << "\tMaddMatrix " << sliceMaddTimer.Elapsed() <<std::endl;
|
||||
|
||||
IterationsToComplete = k;
|
||||
return;
|
||||
}
|
||||
|
||||
}
|
||||
std::cout << GridLogMessage << "BlockConjugateGradient did NOT converge" << std::endl;
|
||||
|
||||
if (ErrorOnNoConverge) assert(0);
|
||||
IterationsToComplete = k;
|
||||
}
|
||||
//////////////////////////////////////////////////////////////////////////
|
||||
// multiRHS conjugate gradient. Dimension zero should be the block direction
|
||||
// Use this for spread out across nodes
|
||||
//////////////////////////////////////////////////////////////////////////
|
||||
@ -600,6 +465,233 @@ void CGmultiRHSsolve(LinearOperatorBase<Field> &Linop, const Field &Src, Field &
|
||||
IterationsToComplete = k;
|
||||
}
|
||||
|
||||
void InnerProductMatrix(Eigen::MatrixXcd &m , const std::vector<Field> &X, const std::vector<Field> &Y){
|
||||
for(int b=0;b<Nblock;b++){
|
||||
for(int bp=0;bp<Nblock;bp++) {
|
||||
m(b,bp) = innerProduct(X[b],Y[bp]);
|
||||
}}
|
||||
}
|
||||
void MaddMatrix(std::vector<Field> &AP, Eigen::MatrixXcd &m , const std::vector<Field> &X,const std::vector<Field> &Y,RealD scale=1.0){
|
||||
// Should make this cache friendly with site outermost, parallel_for
|
||||
// Deal with case AP aliases with either Y or X
|
||||
std::vector<Field> tmp(Nblock,X[0]);
|
||||
for(int b=0;b<Nblock;b++){
|
||||
tmp[b] = Y[b];
|
||||
for(int bp=0;bp<Nblock;bp++) {
|
||||
tmp[b] = tmp[b] + (scale*m(bp,b))*X[bp];
|
||||
}
|
||||
}
|
||||
for(int b=0;b<Nblock;b++){
|
||||
AP[b] = tmp[b];
|
||||
}
|
||||
}
|
||||
void MulMatrix(std::vector<Field> &AP, Eigen::MatrixXcd &m , const std::vector<Field> &X){
|
||||
// Should make this cache friendly with site outermost, parallel_for
|
||||
for(int b=0;b<Nblock;b++){
|
||||
AP[b] = zero;
|
||||
for(int bp=0;bp<Nblock;bp++) {
|
||||
AP[b] += (m(bp,b))*X[bp];
|
||||
}
|
||||
}
|
||||
}
|
||||
double normv(const std::vector<Field> &P){
|
||||
double nn = 0.0;
|
||||
for(int b=0;b<Nblock;b++) {
|
||||
nn+=norm2(P[b]);
|
||||
}
|
||||
return nn;
|
||||
}
|
||||
|
||||
////////////////////////////////////////////////////////////////////////////
|
||||
// BlockCGrQvec implementation:
|
||||
//--------------------------
|
||||
// X is guess/Solution
|
||||
// B is RHS
|
||||
// Solve A X_i = B_i ; i refers to Nblock index
|
||||
////////////////////////////////////////////////////////////////////////////
|
||||
void BlockCGrQsolveVec(LinearOperatorBase<Field> &Linop, const std::vector<Field> &B, std::vector<Field> &X)
|
||||
{
|
||||
Nblock = B.size();
|
||||
assert(Nblock == X.size());
|
||||
|
||||
std::cout<<GridLogMessage<<" Block Conjugate Gradient Vec rQ : Nblock "<<Nblock<<std::endl;
|
||||
|
||||
for(int b=0;b<Nblock;b++){
|
||||
X[b].checkerboard = B[b].checkerboard;
|
||||
conformable(X[b], B[b]);
|
||||
conformable(X[b], X[0]);
|
||||
}
|
||||
|
||||
Field Fake(B[0]);
|
||||
|
||||
std::vector<Field> tmp(Nblock,Fake);
|
||||
std::vector<Field> Q(Nblock,Fake);
|
||||
std::vector<Field> D(Nblock,Fake);
|
||||
std::vector<Field> Z(Nblock,Fake);
|
||||
std::vector<Field> AD(Nblock,Fake);
|
||||
|
||||
Eigen::MatrixXcd m_DZ = Eigen::MatrixXcd::Identity(Nblock,Nblock);
|
||||
Eigen::MatrixXcd m_M = Eigen::MatrixXcd::Identity(Nblock,Nblock);
|
||||
Eigen::MatrixXcd m_rr = Eigen::MatrixXcd::Zero(Nblock,Nblock);
|
||||
|
||||
Eigen::MatrixXcd m_C = Eigen::MatrixXcd::Zero(Nblock,Nblock);
|
||||
Eigen::MatrixXcd m_Cinv = Eigen::MatrixXcd::Zero(Nblock,Nblock);
|
||||
Eigen::MatrixXcd m_S = Eigen::MatrixXcd::Zero(Nblock,Nblock);
|
||||
Eigen::MatrixXcd m_Sinv = Eigen::MatrixXcd::Zero(Nblock,Nblock);
|
||||
|
||||
Eigen::MatrixXcd m_tmp = Eigen::MatrixXcd::Identity(Nblock,Nblock);
|
||||
Eigen::MatrixXcd m_tmp1 = Eigen::MatrixXcd::Identity(Nblock,Nblock);
|
||||
|
||||
// Initial residual computation & set up
|
||||
std::vector<RealD> residuals(Nblock);
|
||||
std::vector<RealD> ssq(Nblock);
|
||||
|
||||
RealD sssum=0;
|
||||
for(int b=0;b<Nblock;b++){ ssq[b] = norm2(B[b]);}
|
||||
for(int b=0;b<Nblock;b++) sssum+=ssq[b];
|
||||
|
||||
for(int b=0;b<Nblock;b++){ residuals[b] = norm2(B[b]);}
|
||||
for(int b=0;b<Nblock;b++){ assert(std::isnan(residuals[b])==0); }
|
||||
|
||||
for(int b=0;b<Nblock;b++){ residuals[b] = norm2(X[b]);}
|
||||
for(int b=0;b<Nblock;b++){ assert(std::isnan(residuals[b])==0); }
|
||||
|
||||
/************************************************************************
|
||||
* Block conjugate gradient rQ (Sebastien Birk Thesis, after Dubrulle 2001)
|
||||
************************************************************************
|
||||
* Dimensions:
|
||||
*
|
||||
* X,B==(Nferm x Nblock)
|
||||
* A==(Nferm x Nferm)
|
||||
*
|
||||
* Nferm = Nspin x Ncolour x Ncomplex x Nlattice_site
|
||||
*
|
||||
* QC = R = B-AX, D = Q ; QC => Thin QR factorisation (google it)
|
||||
* for k:
|
||||
* Z = AD
|
||||
* M = [D^dag Z]^{-1}
|
||||
* X = X + D MC
|
||||
* QS = Q - ZM
|
||||
* D = Q + D S^dag
|
||||
* C = S C
|
||||
*/
|
||||
///////////////////////////////////////
|
||||
// Initial block: initial search dir is guess
|
||||
///////////////////////////////////////
|
||||
std::cout << GridLogMessage<<"BlockCGrQvec algorithm initialisation " <<std::endl;
|
||||
|
||||
//1. QC = R = B-AX, D = Q ; QC => Thin QR factorisation (google it)
|
||||
for(int b=0;b<Nblock;b++) {
|
||||
Linop.HermOp(X[b], AD[b]);
|
||||
tmp[b] = B[b] - AD[b];
|
||||
}
|
||||
|
||||
ThinQRfact (m_rr, m_C, m_Cinv, Q, tmp);
|
||||
|
||||
for(int b=0;b<Nblock;b++) D[b]=Q[b];
|
||||
|
||||
std::cout << GridLogMessage<<"BlockCGrQ vec computed initial residual and QR fact " <<std::endl;
|
||||
|
||||
///////////////////////////////////////
|
||||
// Timers
|
||||
///////////////////////////////////////
|
||||
GridStopWatch sliceInnerTimer;
|
||||
GridStopWatch sliceMaddTimer;
|
||||
GridStopWatch QRTimer;
|
||||
GridStopWatch MatrixTimer;
|
||||
GridStopWatch SolverTimer;
|
||||
SolverTimer.Start();
|
||||
|
||||
int k;
|
||||
for (k = 1; k <= MaxIterations; k++) {
|
||||
|
||||
//3. Z = AD
|
||||
MatrixTimer.Start();
|
||||
for(int b=0;b<Nblock;b++) Linop.HermOp(D[b], Z[b]);
|
||||
MatrixTimer.Stop();
|
||||
|
||||
//4. M = [D^dag Z]^{-1}
|
||||
sliceInnerTimer.Start();
|
||||
InnerProductMatrix(m_DZ,D,Z);
|
||||
sliceInnerTimer.Stop();
|
||||
m_M = m_DZ.inverse();
|
||||
|
||||
//5. X = X + D MC
|
||||
m_tmp = m_M * m_C;
|
||||
sliceMaddTimer.Start();
|
||||
MaddMatrix(X,m_tmp, D,X);
|
||||
sliceMaddTimer.Stop();
|
||||
|
||||
//6. QS = Q - ZM
|
||||
sliceMaddTimer.Start();
|
||||
MaddMatrix(tmp,m_M,Z,Q,-1.0);
|
||||
sliceMaddTimer.Stop();
|
||||
QRTimer.Start();
|
||||
ThinQRfact (m_rr, m_S, m_Sinv, Q, tmp);
|
||||
QRTimer.Stop();
|
||||
|
||||
//7. D = Q + D S^dag
|
||||
m_tmp = m_S.adjoint();
|
||||
sliceMaddTimer.Start();
|
||||
MaddMatrix(D,m_tmp,D,Q);
|
||||
sliceMaddTimer.Stop();
|
||||
|
||||
//8. C = S C
|
||||
m_C = m_S*m_C;
|
||||
|
||||
/*********************
|
||||
* convergence monitor
|
||||
*********************
|
||||
*/
|
||||
m_rr = m_C.adjoint() * m_C;
|
||||
|
||||
RealD max_resid=0;
|
||||
RealD rrsum=0;
|
||||
RealD rr;
|
||||
|
||||
for(int b=0;b<Nblock;b++) {
|
||||
rrsum+=real(m_rr(b,b));
|
||||
rr = real(m_rr(b,b))/ssq[b];
|
||||
if ( rr > max_resid ) max_resid = rr;
|
||||
}
|
||||
|
||||
std::cout << GridLogIterative << "\t Block Iteration "<<k<<" ave resid "<< sqrt(rrsum/sssum) << " max "<< sqrt(max_resid) <<std::endl;
|
||||
|
||||
if ( max_resid < Tolerance*Tolerance ) {
|
||||
|
||||
SolverTimer.Stop();
|
||||
|
||||
std::cout << GridLogMessage<<"BlockCGrQ converged in "<<k<<" iterations"<<std::endl;
|
||||
|
||||
for(int b=0;b<Nblock;b++){
|
||||
std::cout << GridLogMessage<< "\t\tblock "<<b<<" computed resid "<< std::sqrt(real(m_rr(b,b))/ssq[b])<<std::endl;
|
||||
}
|
||||
std::cout << GridLogMessage<<"\tMax residual is "<<std::sqrt(max_resid)<<std::endl;
|
||||
|
||||
for(int b=0;b<Nblock;b++) Linop.HermOp(X[b], AD[b]);
|
||||
for(int b=0;b<Nblock;b++) AD[b] = AD[b]-B[b];
|
||||
std::cout << GridLogMessage <<"\t True residual is " << std::sqrt(normv(AD)/normv(B)) <<std::endl;
|
||||
|
||||
std::cout << GridLogMessage << "Time Breakdown "<<std::endl;
|
||||
std::cout << GridLogMessage << "\tElapsed " << SolverTimer.Elapsed() <<std::endl;
|
||||
std::cout << GridLogMessage << "\tMatrix " << MatrixTimer.Elapsed() <<std::endl;
|
||||
std::cout << GridLogMessage << "\tInnerProd " << sliceInnerTimer.Elapsed() <<std::endl;
|
||||
std::cout << GridLogMessage << "\tMaddMatrix " << sliceMaddTimer.Elapsed() <<std::endl;
|
||||
std::cout << GridLogMessage << "\tThinQRfact " << QRTimer.Elapsed() <<std::endl;
|
||||
|
||||
IterationsToComplete = k;
|
||||
return;
|
||||
}
|
||||
|
||||
}
|
||||
std::cout << GridLogMessage << "BlockConjugateGradient(rQ) did NOT converge" << std::endl;
|
||||
|
||||
if (ErrorOnNoConverge) assert(0);
|
||||
IterationsToComplete = k;
|
||||
}
|
||||
|
||||
|
||||
|
||||
};
|
||||
|
||||
}
|
@ -0,0 +1,244 @@
|
||||
/*************************************************************************************
|
||||
|
||||
Grid physics library, www.github.com/paboyle/Grid
|
||||
|
||||
Source file: ./lib/algorithms/iterative/CommunicationAvoidingGeneralisedMinimalResidual.h
|
||||
|
||||
Copyright (C) 2015
|
||||
|
||||
Author: Daniel Richtmann <daniel.richtmann@ur.de>
|
||||
|
||||
This program is free software; you can redistribute it and/or modify
|
||||
it under the terms of the GNU General Public License as published by
|
||||
the Free Software Foundation; either version 2 of the License, or
|
||||
(at your option) any later version.
|
||||
|
||||
This program is distributed in the hope that it will be useful,
|
||||
but WITHOUT ANY WARRANTY; without even the implied warranty of
|
||||
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
|
||||
GNU General Public License for more details.
|
||||
|
||||
You should have received a copy of the GNU General Public License along
|
||||
with this program; if not, write to the Free Software Foundation, Inc.,
|
||||
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
|
||||
|
||||
See the full license in the file "LICENSE" in the top level distribution
|
||||
directory
|
||||
*************************************************************************************/
|
||||
/* END LEGAL */
|
||||
#ifndef GRID_COMMUNICATION_AVOIDING_GENERALISED_MINIMAL_RESIDUAL_H
|
||||
#define GRID_COMMUNICATION_AVOIDING_GENERALISED_MINIMAL_RESIDUAL_H
|
||||
|
||||
namespace Grid {
|
||||
|
||||
template<class Field>
|
||||
class CommunicationAvoidingGeneralisedMinimalResidual : public OperatorFunction<Field> {
|
||||
public:
|
||||
bool ErrorOnNoConverge; // Throw an assert when CAGMRES fails to converge,
|
||||
// defaults to true
|
||||
|
||||
RealD Tolerance;
|
||||
|
||||
Integer MaxIterations;
|
||||
Integer RestartLength;
|
||||
Integer MaxNumberOfRestarts;
|
||||
Integer IterationCount; // Number of iterations the CAGMRES took to finish,
|
||||
// filled in upon completion
|
||||
|
||||
GridStopWatch MatrixTimer;
|
||||
GridStopWatch LinalgTimer;
|
||||
GridStopWatch QrTimer;
|
||||
GridStopWatch CompSolutionTimer;
|
||||
|
||||
Eigen::MatrixXcd H;
|
||||
|
||||
std::vector<std::complex<double>> y;
|
||||
std::vector<std::complex<double>> gamma;
|
||||
std::vector<std::complex<double>> c;
|
||||
std::vector<std::complex<double>> s;
|
||||
|
||||
CommunicationAvoidingGeneralisedMinimalResidual(RealD tol,
|
||||
Integer maxit,
|
||||
Integer restart_length,
|
||||
bool err_on_no_conv = true)
|
||||
: Tolerance(tol)
|
||||
, MaxIterations(maxit)
|
||||
, RestartLength(restart_length)
|
||||
, MaxNumberOfRestarts(MaxIterations/RestartLength + ((MaxIterations%RestartLength == 0) ? 0 : 1))
|
||||
, ErrorOnNoConverge(err_on_no_conv)
|
||||
, H(Eigen::MatrixXcd::Zero(RestartLength, RestartLength + 1)) // sizes taken from DD-αAMG code base
|
||||
, y(RestartLength + 1, 0.)
|
||||
, gamma(RestartLength + 1, 0.)
|
||||
, c(RestartLength + 1, 0.)
|
||||
, s(RestartLength + 1, 0.) {};
|
||||
|
||||
void operator()(LinearOperatorBase<Field> &LinOp, const Field &src, Field &psi) {
|
||||
|
||||
std::cout << GridLogWarning << "This algorithm currently doesn't differ from regular GMRES" << std::endl;
|
||||
|
||||
psi.checkerboard = src.checkerboard;
|
||||
conformable(psi, src);
|
||||
|
||||
RealD guess = norm2(psi);
|
||||
assert(std::isnan(guess) == 0);
|
||||
|
||||
RealD cp;
|
||||
RealD ssq = norm2(src);
|
||||
RealD rsq = Tolerance * Tolerance * ssq;
|
||||
|
||||
Field r(src._grid);
|
||||
|
||||
std::cout << std::setprecision(4) << std::scientific;
|
||||
std::cout << GridLogIterative << "CommunicationAvoidingGeneralisedMinimalResidual: guess " << guess << std::endl;
|
||||
std::cout << GridLogIterative << "CommunicationAvoidingGeneralisedMinimalResidual: src " << ssq << std::endl;
|
||||
|
||||
MatrixTimer.Reset();
|
||||
LinalgTimer.Reset();
|
||||
QrTimer.Reset();
|
||||
CompSolutionTimer.Reset();
|
||||
|
||||
GridStopWatch SolverTimer;
|
||||
SolverTimer.Start();
|
||||
|
||||
IterationCount = 0;
|
||||
|
||||
for (int k=0; k<MaxNumberOfRestarts; k++) {
|
||||
|
||||
cp = outerLoopBody(LinOp, src, psi, rsq);
|
||||
|
||||
// Stopping condition
|
||||
if (cp <= rsq) {
|
||||
|
||||
SolverTimer.Stop();
|
||||
|
||||
LinOp.Op(psi,r);
|
||||
axpy(r,-1.0,src,r);
|
||||
|
||||
RealD srcnorm = sqrt(ssq);
|
||||
RealD resnorm = sqrt(norm2(r));
|
||||
RealD true_residual = resnorm / srcnorm;
|
||||
|
||||
std::cout << GridLogMessage << "CommunicationAvoidingGeneralisedMinimalResidual: Converged on iteration " << IterationCount
|
||||
<< " computed residual " << sqrt(cp / ssq)
|
||||
<< " true residual " << true_residual
|
||||
<< " target " << Tolerance << std::endl;
|
||||
|
||||
std::cout << GridLogMessage << "CAGMRES Time elapsed: Total " << SolverTimer.Elapsed() << std::endl;
|
||||
std::cout << GridLogMessage << "CAGMRES Time elapsed: Matrix " << MatrixTimer.Elapsed() << std::endl;
|
||||
std::cout << GridLogMessage << "CAGMRES Time elapsed: Linalg " << LinalgTimer.Elapsed() << std::endl;
|
||||
std::cout << GridLogMessage << "CAGMRES Time elapsed: QR " << QrTimer.Elapsed() << std::endl;
|
||||
std::cout << GridLogMessage << "CAGMRES Time elapsed: CompSol " << CompSolutionTimer.Elapsed() << std::endl;
|
||||
return;
|
||||
}
|
||||
}
|
||||
|
||||
std::cout << GridLogMessage << "CommunicationAvoidingGeneralisedMinimalResidual did NOT converge" << std::endl;
|
||||
|
||||
if (ErrorOnNoConverge)
|
||||
assert(0);
|
||||
}
|
||||
|
||||
RealD outerLoopBody(LinearOperatorBase<Field> &LinOp, const Field &src, Field &psi, RealD rsq) {
|
||||
|
||||
RealD cp = 0;
|
||||
|
||||
Field w(src._grid);
|
||||
Field r(src._grid);
|
||||
|
||||
// this should probably be made a class member so that it is only allocated once, not in every restart
|
||||
std::vector<Field> v(RestartLength + 1, src._grid); for (auto &elem : v) elem = zero;
|
||||
|
||||
MatrixTimer.Start();
|
||||
LinOp.Op(psi, w);
|
||||
MatrixTimer.Stop();
|
||||
|
||||
LinalgTimer.Start();
|
||||
r = src - w;
|
||||
|
||||
gamma[0] = sqrt(norm2(r));
|
||||
|
||||
v[0] = (1. / gamma[0]) * r;
|
||||
LinalgTimer.Stop();
|
||||
|
||||
for (int i=0; i<RestartLength; i++) {
|
||||
|
||||
IterationCount++;
|
||||
|
||||
arnoldiStep(LinOp, v, w, i);
|
||||
|
||||
qrUpdate(i);
|
||||
|
||||
cp = std::norm(gamma[i+1]);
|
||||
|
||||
std::cout << GridLogIterative << "CommunicationAvoidingGeneralisedMinimalResidual: Iteration " << IterationCount
|
||||
<< " residual " << cp << " target " << rsq << std::endl;
|
||||
|
||||
if ((i == RestartLength - 1) || (IterationCount == MaxIterations) || (cp <= rsq)) {
|
||||
|
||||
computeSolution(v, psi, i);
|
||||
|
||||
return cp;
|
||||
}
|
||||
}
|
||||
|
||||
assert(0); // Never reached
|
||||
return cp;
|
||||
}
|
||||
|
||||
void arnoldiStep(LinearOperatorBase<Field> &LinOp, std::vector<Field> &v, Field &w, int iter) {
|
||||
|
||||
MatrixTimer.Start();
|
||||
LinOp.Op(v[iter], w);
|
||||
MatrixTimer.Stop();
|
||||
|
||||
LinalgTimer.Start();
|
||||
for (int i = 0; i <= iter; ++i) {
|
||||
H(iter, i) = innerProduct(v[i], w);
|
||||
w = w - H(iter, i) * v[i];
|
||||
}
|
||||
|
||||
H(iter, iter + 1) = sqrt(norm2(w));
|
||||
v[iter + 1] = (1. / H(iter, iter + 1)) * w;
|
||||
LinalgTimer.Stop();
|
||||
}
|
||||
|
||||
void qrUpdate(int iter) {
|
||||
|
||||
QrTimer.Start();
|
||||
for (int i = 0; i < iter ; ++i) {
|
||||
auto tmp = -s[i] * H(iter, i) + c[i] * H(iter, i + 1);
|
||||
H(iter, i) = std::conj(c[i]) * H(iter, i) + std::conj(s[i]) * H(iter, i + 1);
|
||||
H(iter, i + 1) = tmp;
|
||||
}
|
||||
|
||||
// Compute new Givens Rotation
|
||||
ComplexD nu = sqrt(std::norm(H(iter, iter)) + std::norm(H(iter, iter + 1)));
|
||||
c[iter] = H(iter, iter) / nu;
|
||||
s[iter] = H(iter, iter + 1) / nu;
|
||||
|
||||
// Apply new Givens rotation
|
||||
H(iter, iter) = nu;
|
||||
H(iter, iter + 1) = 0.;
|
||||
|
||||
gamma[iter + 1] = -s[iter] * gamma[iter];
|
||||
gamma[iter] = std::conj(c[iter]) * gamma[iter];
|
||||
QrTimer.Stop();
|
||||
}
|
||||
|
||||
void computeSolution(std::vector<Field> const &v, Field &psi, int iter) {
|
||||
|
||||
CompSolutionTimer.Start();
|
||||
for (int i = iter; i >= 0; i--) {
|
||||
y[i] = gamma[i];
|
||||
for (int k = i + 1; k <= iter; k++)
|
||||
y[i] = y[i] - H(k, i) * y[k];
|
||||
y[i] = y[i] / H(i, i);
|
||||
}
|
||||
|
||||
for (int i = 0; i <= iter; i++)
|
||||
psi = psi + v[i] * y[i];
|
||||
CompSolutionTimer.Stop();
|
||||
}
|
||||
};
|
||||
}
|
||||
#endif
|
@ -89,6 +89,8 @@ class ConjugateGradient : public OperatorFunction<Field> {
|
||||
|
||||
// Check if guess is really REALLY good :)
|
||||
if (cp <= rsq) {
|
||||
std::cout << GridLogMessage << "ConjugateGradient guess is converged already " << std::endl;
|
||||
IterationsToComplete = 0;
|
||||
return;
|
||||
}
|
||||
|
||||
@ -104,7 +106,7 @@ class ConjugateGradient : public OperatorFunction<Field> {
|
||||
|
||||
SolverTimer.Start();
|
||||
int k;
|
||||
for (k = 1; k <= MaxIterations*1000; k++) {
|
||||
for (k = 1; k <= MaxIterations; k++) {
|
||||
c = cp;
|
||||
|
||||
MatrixTimer.Start();
|
||||
@ -133,7 +135,7 @@ class ConjugateGradient : public OperatorFunction<Field> {
|
||||
LinalgTimer.Stop();
|
||||
|
||||
std::cout << GridLogIterative << "ConjugateGradient: Iteration " << k
|
||||
<< " residual " << cp << " target " << rsq << std::endl;
|
||||
<< " residual^2 " << sqrt(cp/ssq) << " target " << Tolerance << std::endl;
|
||||
|
||||
// Stopping condition
|
||||
if (cp <= rsq) {
|
||||
@ -165,8 +167,7 @@ class ConjugateGradient : public OperatorFunction<Field> {
|
||||
return;
|
||||
}
|
||||
}
|
||||
std::cout << GridLogMessage << "ConjugateGradient did NOT converge"
|
||||
<< std::endl;
|
||||
std::cout << GridLogMessage << "ConjugateGradient did NOT converge "<<k<<" / "<< MaxIterations<< std::endl;
|
||||
|
||||
if (ErrorOnNoConverge) assert(0);
|
||||
IterationsToComplete = k;
|
@ -30,8 +30,11 @@ Author: Christopher Kelly <ckelly@phys.columbia.edu>
|
||||
|
||||
namespace Grid {
|
||||
|
||||
|
||||
//Mixed precision restarted defect correction CG
|
||||
template<class FieldD,class FieldF, typename std::enable_if< getPrecision<FieldD>::value == 2, int>::type = 0,typename std::enable_if< getPrecision<FieldF>::value == 1, int>::type = 0>
|
||||
template<class FieldD,class FieldF,
|
||||
typename std::enable_if< getPrecision<FieldD>::value == 2, int>::type = 0,
|
||||
typename std::enable_if< getPrecision<FieldF>::value == 1, int>::type = 0>
|
||||
class MixedPrecisionConjugateGradient : public LinearFunction<FieldD> {
|
||||
public:
|
||||
RealD Tolerance;
|
||||
@ -50,7 +53,12 @@ namespace Grid {
|
||||
//Option to speed up *inner single precision* solves using a LinearFunction that produces a guess
|
||||
LinearFunction<FieldF> *guesser;
|
||||
|
||||
MixedPrecisionConjugateGradient(RealD tol, Integer maxinnerit, Integer maxouterit, GridBase* _sp_grid, LinearOperatorBase<FieldF> &_Linop_f, LinearOperatorBase<FieldD> &_Linop_d) :
|
||||
MixedPrecisionConjugateGradient(RealD tol,
|
||||
Integer maxinnerit,
|
||||
Integer maxouterit,
|
||||
GridBase* _sp_grid,
|
||||
LinearOperatorBase<FieldF> &_Linop_f,
|
||||
LinearOperatorBase<FieldD> &_Linop_d) :
|
||||
Linop_f(_Linop_f), Linop_d(_Linop_d),
|
||||
Tolerance(tol), InnerTolerance(tol), MaxInnerIterations(maxinnerit), MaxOuterIterations(maxouterit), SinglePrecGrid(_sp_grid),
|
||||
OuterLoopNormMult(100.), guesser(NULL){ };
|
||||
@ -149,6 +157,8 @@ namespace Grid {
|
||||
}
|
||||
};
|
||||
|
||||
|
||||
|
||||
}
|
||||
|
||||
#endif
|
@ -30,22 +30,27 @@ Author: Peter Boyle <paboyle@ph.ed.ac.uk>
|
||||
|
||||
namespace Grid {
|
||||
|
||||
struct ZeroGuesser {
|
||||
template<class Field>
|
||||
class ZeroGuesser: public LinearFunction<Field> {
|
||||
public:
|
||||
template<class Field>
|
||||
void operator()(const Field &src,Field &guess) { guess = Zero(); };
|
||||
virtual void operator()(const Field &src, Field &guess) { guess = zero; };
|
||||
};
|
||||
struct SourceGuesser {
|
||||
template<class Field>
|
||||
class DoNothingGuesser: public LinearFunction<Field> {
|
||||
public:
|
||||
template<class Field>
|
||||
void operator()(const Field &src,Field &guess) { guess = src; };
|
||||
virtual void operator()(const Field &src, Field &guess) { };
|
||||
};
|
||||
template<class Field>
|
||||
class SourceGuesser: public LinearFunction<Field> {
|
||||
public:
|
||||
virtual void operator()(const Field &src, Field &guess) { guess = src; };
|
||||
};
|
||||
|
||||
////////////////////////////////
|
||||
// Fine grid deflation
|
||||
////////////////////////////////
|
||||
template<class Field>
|
||||
struct DeflatedGuesser {
|
||||
class DeflatedGuesser: public LinearFunction<Field> {
|
||||
private:
|
||||
const std::vector<Field> &evec;
|
||||
const std::vector<RealD> &eval;
|
||||
@ -54,7 +59,7 @@ public:
|
||||
|
||||
DeflatedGuesser(const std::vector<Field> & _evec,const std::vector<RealD> & _eval) : evec(_evec), eval(_eval) {};
|
||||
|
||||
void operator()(const Field &src,Field &guess) {
|
||||
virtual void operator()(const Field &src,Field &guess) {
|
||||
guess = zero;
|
||||
assert(evec.size()==eval.size());
|
||||
auto N = evec.size();
|
||||
@ -62,11 +67,12 @@ public:
|
||||
const Field& tmp = evec[i];
|
||||
axpy(guess,TensorRemove(innerProduct(tmp,src)) / eval[i],tmp,guess);
|
||||
}
|
||||
guess.checkerboard = src.checkerboard;
|
||||
}
|
||||
};
|
||||
|
||||
template<class FineField, class CoarseField>
|
||||
class LocalCoherenceDeflatedGuesser {
|
||||
class LocalCoherenceDeflatedGuesser: public LinearFunction<FineField> {
|
||||
private:
|
||||
const std::vector<FineField> &subspace;
|
||||
const std::vector<CoarseField> &evec_coarse;
|
||||
@ -92,6 +98,7 @@ public:
|
||||
axpy(guess_coarse,TensorRemove(innerProduct(tmp,src_coarse)) / eval_coarse[i],tmp,guess_coarse);
|
||||
}
|
||||
blockPromote(guess_coarse,guess,subspace);
|
||||
guess.checkerboard = src.checkerboard;
|
||||
};
|
||||
};
|
||||
|
@ -0,0 +1,256 @@
|
||||
/*************************************************************************************
|
||||
|
||||
Grid physics library, www.github.com/paboyle/Grid
|
||||
|
||||
Source file: ./lib/algorithms/iterative/FlexibleCommunicationAvoidingGeneralisedMinimalResidual.h
|
||||
|
||||
Copyright (C) 2015
|
||||
|
||||
Author: Daniel Richtmann <daniel.richtmann@ur.de>
|
||||
|
||||
This program is free software; you can redistribute it and/or modify
|
||||
it under the terms of the GNU General Public License as published by
|
||||
the Free Software Foundation; either version 2 of the License, or
|
||||
(at your option) any later version.
|
||||
|
||||
This program is distributed in the hope that it will be useful,
|
||||
but WITHOUT ANY WARRANTY; without even the implied warranty of
|
||||
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
|
||||
GNU General Public License for more details.
|
||||
|
||||
You should have received a copy of the GNU General Public License along
|
||||
with this program; if not, write to the Free Software Foundation, Inc.,
|
||||
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
|
||||
|
||||
See the full license in the file "LICENSE" in the top level distribution
|
||||
directory
|
||||
*************************************************************************************/
|
||||
/* END LEGAL */
|
||||
#ifndef GRID_FLEXIBLE_COMMUNICATION_AVOIDING_GENERALISED_MINIMAL_RESIDUAL_H
|
||||
#define GRID_FLEXIBLE_COMMUNICATION_AVOIDING_GENERALISED_MINIMAL_RESIDUAL_H
|
||||
|
||||
namespace Grid {
|
||||
|
||||
template<class Field>
|
||||
class FlexibleCommunicationAvoidingGeneralisedMinimalResidual : public OperatorFunction<Field> {
|
||||
public:
|
||||
bool ErrorOnNoConverge; // Throw an assert when FCAGMRES fails to converge,
|
||||
// defaults to true
|
||||
|
||||
RealD Tolerance;
|
||||
|
||||
Integer MaxIterations;
|
||||
Integer RestartLength;
|
||||
Integer MaxNumberOfRestarts;
|
||||
Integer IterationCount; // Number of iterations the FCAGMRES took to finish,
|
||||
// filled in upon completion
|
||||
|
||||
GridStopWatch MatrixTimer;
|
||||
GridStopWatch PrecTimer;
|
||||
GridStopWatch LinalgTimer;
|
||||
GridStopWatch QrTimer;
|
||||
GridStopWatch CompSolutionTimer;
|
||||
|
||||
Eigen::MatrixXcd H;
|
||||
|
||||
std::vector<std::complex<double>> y;
|
||||
std::vector<std::complex<double>> gamma;
|
||||
std::vector<std::complex<double>> c;
|
||||
std::vector<std::complex<double>> s;
|
||||
|
||||
LinearFunction<Field> &Preconditioner;
|
||||
|
||||
FlexibleCommunicationAvoidingGeneralisedMinimalResidual(RealD tol,
|
||||
Integer maxit,
|
||||
LinearFunction<Field> &Prec,
|
||||
Integer restart_length,
|
||||
bool err_on_no_conv = true)
|
||||
: Tolerance(tol)
|
||||
, MaxIterations(maxit)
|
||||
, RestartLength(restart_length)
|
||||
, MaxNumberOfRestarts(MaxIterations/RestartLength + ((MaxIterations%RestartLength == 0) ? 0 : 1))
|
||||
, ErrorOnNoConverge(err_on_no_conv)
|
||||
, H(Eigen::MatrixXcd::Zero(RestartLength, RestartLength + 1)) // sizes taken from DD-αAMG code base
|
||||
, y(RestartLength + 1, 0.)
|
||||
, gamma(RestartLength + 1, 0.)
|
||||
, c(RestartLength + 1, 0.)
|
||||
, s(RestartLength + 1, 0.)
|
||||
, Preconditioner(Prec) {};
|
||||
|
||||
void operator()(LinearOperatorBase<Field> &LinOp, const Field &src, Field &psi) {
|
||||
|
||||
std::cout << GridLogWarning << "This algorithm currently doesn't differ from regular FGMRES" << std::endl;
|
||||
|
||||
psi.checkerboard = src.checkerboard;
|
||||
conformable(psi, src);
|
||||
|
||||
RealD guess = norm2(psi);
|
||||
assert(std::isnan(guess) == 0);
|
||||
|
||||
RealD cp;
|
||||
RealD ssq = norm2(src);
|
||||
RealD rsq = Tolerance * Tolerance * ssq;
|
||||
|
||||
Field r(src._grid);
|
||||
|
||||
std::cout << std::setprecision(4) << std::scientific;
|
||||
std::cout << GridLogIterative << "FlexibleCommunicationAvoidingGeneralisedMinimalResidual: guess " << guess << std::endl;
|
||||
std::cout << GridLogIterative << "FlexibleCommunicationAvoidingGeneralisedMinimalResidual: src " << ssq << std::endl;
|
||||
|
||||
PrecTimer.Reset();
|
||||
MatrixTimer.Reset();
|
||||
LinalgTimer.Reset();
|
||||
QrTimer.Reset();
|
||||
CompSolutionTimer.Reset();
|
||||
|
||||
GridStopWatch SolverTimer;
|
||||
SolverTimer.Start();
|
||||
|
||||
IterationCount = 0;
|
||||
|
||||
for (int k=0; k<MaxNumberOfRestarts; k++) {
|
||||
|
||||
cp = outerLoopBody(LinOp, src, psi, rsq);
|
||||
|
||||
// Stopping condition
|
||||
if (cp <= rsq) {
|
||||
|
||||
SolverTimer.Stop();
|
||||
|
||||
LinOp.Op(psi,r);
|
||||
axpy(r,-1.0,src,r);
|
||||
|
||||
RealD srcnorm = sqrt(ssq);
|
||||
RealD resnorm = sqrt(norm2(r));
|
||||
RealD true_residual = resnorm / srcnorm;
|
||||
|
||||
std::cout << GridLogMessage << "FlexibleCommunicationAvoidingGeneralisedMinimalResidual: Converged on iteration " << IterationCount
|
||||
<< " computed residual " << sqrt(cp / ssq)
|
||||
<< " true residual " << true_residual
|
||||
<< " target " << Tolerance << std::endl;
|
||||
|
||||
std::cout << GridLogMessage << "FCAGMRES Time elapsed: Total " << SolverTimer.Elapsed() << std::endl;
|
||||
std::cout << GridLogMessage << "FCAGMRES Time elapsed: Precon " << PrecTimer.Elapsed() << std::endl;
|
||||
std::cout << GridLogMessage << "FCAGMRES Time elapsed: Matrix " << MatrixTimer.Elapsed() << std::endl;
|
||||
std::cout << GridLogMessage << "FCAGMRES Time elapsed: Linalg " << LinalgTimer.Elapsed() << std::endl;
|
||||
std::cout << GridLogMessage << "FCAGMRES Time elapsed: QR " << QrTimer.Elapsed() << std::endl;
|
||||
std::cout << GridLogMessage << "FCAGMRES Time elapsed: CompSol " << CompSolutionTimer.Elapsed() << std::endl;
|
||||
return;
|
||||
}
|
||||
}
|
||||
|
||||
std::cout << GridLogMessage << "FlexibleCommunicationAvoidingGeneralisedMinimalResidual did NOT converge" << std::endl;
|
||||
|
||||
if (ErrorOnNoConverge)
|
||||
assert(0);
|
||||
}
|
||||
|
||||
RealD outerLoopBody(LinearOperatorBase<Field> &LinOp, const Field &src, Field &psi, RealD rsq) {
|
||||
|
||||
RealD cp = 0;
|
||||
|
||||
Field w(src._grid);
|
||||
Field r(src._grid);
|
||||
|
||||
// these should probably be made class members so that they are only allocated once, not in every restart
|
||||
std::vector<Field> v(RestartLength + 1, src._grid); for (auto &elem : v) elem = zero;
|
||||
std::vector<Field> z(RestartLength + 1, src._grid); for (auto &elem : z) elem = zero;
|
||||
|
||||
MatrixTimer.Start();
|
||||
LinOp.Op(psi, w);
|
||||
MatrixTimer.Stop();
|
||||
|
||||
LinalgTimer.Start();
|
||||
r = src - w;
|
||||
|
||||
gamma[0] = sqrt(norm2(r));
|
||||
|
||||
v[0] = (1. / gamma[0]) * r;
|
||||
LinalgTimer.Stop();
|
||||
|
||||
for (int i=0; i<RestartLength; i++) {
|
||||
|
||||
IterationCount++;
|
||||
|
||||
arnoldiStep(LinOp, v, z, w, i);
|
||||
|
||||
qrUpdate(i);
|
||||
|
||||
cp = std::norm(gamma[i+1]);
|
||||
|
||||
std::cout << GridLogIterative << "FlexibleCommunicationAvoidingGeneralisedMinimalResidual: Iteration " << IterationCount
|
||||
<< " residual " << cp << " target " << rsq << std::endl;
|
||||
|
||||
if ((i == RestartLength - 1) || (IterationCount == MaxIterations) || (cp <= rsq)) {
|
||||
|
||||
computeSolution(z, psi, i);
|
||||
|
||||
return cp;
|
||||
}
|
||||
}
|
||||
|
||||
assert(0); // Never reached
|
||||
return cp;
|
||||
}
|
||||
|
||||
void arnoldiStep(LinearOperatorBase<Field> &LinOp, std::vector<Field> &v, std::vector<Field> &z, Field &w, int iter) {
|
||||
|
||||
PrecTimer.Start();
|
||||
Preconditioner(v[iter], z[iter]);
|
||||
PrecTimer.Stop();
|
||||
|
||||
MatrixTimer.Start();
|
||||
LinOp.Op(z[iter], w);
|
||||
MatrixTimer.Stop();
|
||||
|
||||
LinalgTimer.Start();
|
||||
for (int i = 0; i <= iter; ++i) {
|
||||
H(iter, i) = innerProduct(v[i], w);
|
||||
w = w - H(iter, i) * v[i];
|
||||
}
|
||||
|
||||
H(iter, iter + 1) = sqrt(norm2(w));
|
||||
v[iter + 1] = (1. / H(iter, iter + 1)) * w;
|
||||
LinalgTimer.Stop();
|
||||
}
|
||||
|
||||
void qrUpdate(int iter) {
|
||||
|
||||
QrTimer.Start();
|
||||
for (int i = 0; i < iter ; ++i) {
|
||||
auto tmp = -s[i] * H(iter, i) + c[i] * H(iter, i + 1);
|
||||
H(iter, i) = std::conj(c[i]) * H(iter, i) + std::conj(s[i]) * H(iter, i + 1);
|
||||
H(iter, i + 1) = tmp;
|
||||
}
|
||||
|
||||
// Compute new Givens Rotation
|
||||
ComplexD nu = sqrt(std::norm(H(iter, iter)) + std::norm(H(iter, iter + 1)));
|
||||
c[iter] = H(iter, iter) / nu;
|
||||
s[iter] = H(iter, iter + 1) / nu;
|
||||
|
||||
// Apply new Givens rotation
|
||||
H(iter, iter) = nu;
|
||||
H(iter, iter + 1) = 0.;
|
||||
|
||||
gamma[iter + 1] = -s[iter] * gamma[iter];
|
||||
gamma[iter] = std::conj(c[iter]) * gamma[iter];
|
||||
QrTimer.Stop();
|
||||
}
|
||||
|
||||
void computeSolution(std::vector<Field> const &z, Field &psi, int iter) {
|
||||
|
||||
CompSolutionTimer.Start();
|
||||
for (int i = iter; i >= 0; i--) {
|
||||
y[i] = gamma[i];
|
||||
for (int k = i + 1; k <= iter; k++)
|
||||
y[i] = y[i] - H(k, i) * y[k];
|
||||
y[i] = y[i] / H(i, i);
|
||||
}
|
||||
|
||||
for (int i = 0; i <= iter; i++)
|
||||
psi = psi + z[i] * y[i];
|
||||
CompSolutionTimer.Stop();
|
||||
}
|
||||
};
|
||||
}
|
||||
#endif
|
254
Grid/algorithms/iterative/FlexibleGeneralisedMinimalResidual.h
Normal file
254
Grid/algorithms/iterative/FlexibleGeneralisedMinimalResidual.h
Normal file
@ -0,0 +1,254 @@
|
||||
/*************************************************************************************
|
||||
|
||||
Grid physics library, www.github.com/paboyle/Grid
|
||||
|
||||
Source file: ./lib/algorithms/iterative/FlexibleGeneralisedMinimalResidual.h
|
||||
|
||||
Copyright (C) 2015
|
||||
|
||||
Author: Daniel Richtmann <daniel.richtmann@ur.de>
|
||||
|
||||
This program is free software; you can redistribute it and/or modify
|
||||
it under the terms of the GNU General Public License as published by
|
||||
the Free Software Foundation; either version 2 of the License, or
|
||||
(at your option) any later version.
|
||||
|
||||
This program is distributed in the hope that it will be useful,
|
||||
but WITHOUT ANY WARRANTY; without even the implied warranty of
|
||||
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
|
||||
GNU General Public License for more details.
|
||||
|
||||
You should have received a copy of the GNU General Public License along
|
||||
with this program; if not, write to the Free Software Foundation, Inc.,
|
||||
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
|
||||
|
||||
See the full license in the file "LICENSE" in the top level distribution
|
||||
directory
|
||||
*************************************************************************************/
|
||||
/* END LEGAL */
|
||||
#ifndef GRID_FLEXIBLE_GENERALISED_MINIMAL_RESIDUAL_H
|
||||
#define GRID_FLEXIBLE_GENERALISED_MINIMAL_RESIDUAL_H
|
||||
|
||||
namespace Grid {
|
||||
|
||||
template<class Field>
|
||||
class FlexibleGeneralisedMinimalResidual : public OperatorFunction<Field> {
|
||||
public:
|
||||
bool ErrorOnNoConverge; // Throw an assert when FGMRES fails to converge,
|
||||
// defaults to true
|
||||
|
||||
RealD Tolerance;
|
||||
|
||||
Integer MaxIterations;
|
||||
Integer RestartLength;
|
||||
Integer MaxNumberOfRestarts;
|
||||
Integer IterationCount; // Number of iterations the FGMRES took to finish,
|
||||
// filled in upon completion
|
||||
|
||||
GridStopWatch MatrixTimer;
|
||||
GridStopWatch PrecTimer;
|
||||
GridStopWatch LinalgTimer;
|
||||
GridStopWatch QrTimer;
|
||||
GridStopWatch CompSolutionTimer;
|
||||
|
||||
Eigen::MatrixXcd H;
|
||||
|
||||
std::vector<std::complex<double>> y;
|
||||
std::vector<std::complex<double>> gamma;
|
||||
std::vector<std::complex<double>> c;
|
||||
std::vector<std::complex<double>> s;
|
||||
|
||||
LinearFunction<Field> &Preconditioner;
|
||||
|
||||
FlexibleGeneralisedMinimalResidual(RealD tol,
|
||||
Integer maxit,
|
||||
LinearFunction<Field> &Prec,
|
||||
Integer restart_length,
|
||||
bool err_on_no_conv = true)
|
||||
: Tolerance(tol)
|
||||
, MaxIterations(maxit)
|
||||
, RestartLength(restart_length)
|
||||
, MaxNumberOfRestarts(MaxIterations/RestartLength + ((MaxIterations%RestartLength == 0) ? 0 : 1))
|
||||
, ErrorOnNoConverge(err_on_no_conv)
|
||||
, H(Eigen::MatrixXcd::Zero(RestartLength, RestartLength + 1)) // sizes taken from DD-αAMG code base
|
||||
, y(RestartLength + 1, 0.)
|
||||
, gamma(RestartLength + 1, 0.)
|
||||
, c(RestartLength + 1, 0.)
|
||||
, s(RestartLength + 1, 0.)
|
||||
, Preconditioner(Prec) {};
|
||||
|
||||
void operator()(LinearOperatorBase<Field> &LinOp, const Field &src, Field &psi) {
|
||||
|
||||
psi.checkerboard = src.checkerboard;
|
||||
conformable(psi, src);
|
||||
|
||||
RealD guess = norm2(psi);
|
||||
assert(std::isnan(guess) == 0);
|
||||
|
||||
RealD cp;
|
||||
RealD ssq = norm2(src);
|
||||
RealD rsq = Tolerance * Tolerance * ssq;
|
||||
|
||||
Field r(src._grid);
|
||||
|
||||
std::cout << std::setprecision(4) << std::scientific;
|
||||
std::cout << GridLogIterative << "FlexibleGeneralisedMinimalResidual: guess " << guess << std::endl;
|
||||
std::cout << GridLogIterative << "FlexibleGeneralisedMinimalResidual: src " << ssq << std::endl;
|
||||
|
||||
PrecTimer.Reset();
|
||||
MatrixTimer.Reset();
|
||||
LinalgTimer.Reset();
|
||||
QrTimer.Reset();
|
||||
CompSolutionTimer.Reset();
|
||||
|
||||
GridStopWatch SolverTimer;
|
||||
SolverTimer.Start();
|
||||
|
||||
IterationCount = 0;
|
||||
|
||||
for (int k=0; k<MaxNumberOfRestarts; k++) {
|
||||
|
||||
cp = outerLoopBody(LinOp, src, psi, rsq);
|
||||
|
||||
// Stopping condition
|
||||
if (cp <= rsq) {
|
||||
|
||||
SolverTimer.Stop();
|
||||
|
||||
LinOp.Op(psi,r);
|
||||
axpy(r,-1.0,src,r);
|
||||
|
||||
RealD srcnorm = sqrt(ssq);
|
||||
RealD resnorm = sqrt(norm2(r));
|
||||
RealD true_residual = resnorm / srcnorm;
|
||||
|
||||
std::cout << GridLogMessage << "FlexibleGeneralisedMinimalResidual: Converged on iteration " << IterationCount
|
||||
<< " computed residual " << sqrt(cp / ssq)
|
||||
<< " true residual " << true_residual
|
||||
<< " target " << Tolerance << std::endl;
|
||||
|
||||
std::cout << GridLogMessage << "FGMRES Time elapsed: Total " << SolverTimer.Elapsed() << std::endl;
|
||||
std::cout << GridLogMessage << "FGMRES Time elapsed: Precon " << PrecTimer.Elapsed() << std::endl;
|
||||
std::cout << GridLogMessage << "FGMRES Time elapsed: Matrix " << MatrixTimer.Elapsed() << std::endl;
|
||||
std::cout << GridLogMessage << "FGMRES Time elapsed: Linalg " << LinalgTimer.Elapsed() << std::endl;
|
||||
std::cout << GridLogMessage << "FGMRES Time elapsed: QR " << QrTimer.Elapsed() << std::endl;
|
||||
std::cout << GridLogMessage << "FGMRES Time elapsed: CompSol " << CompSolutionTimer.Elapsed() << std::endl;
|
||||
return;
|
||||
}
|
||||
}
|
||||
|
||||
std::cout << GridLogMessage << "FlexibleGeneralisedMinimalResidual did NOT converge" << std::endl;
|
||||
|
||||
if (ErrorOnNoConverge)
|
||||
assert(0);
|
||||
}
|
||||
|
||||
RealD outerLoopBody(LinearOperatorBase<Field> &LinOp, const Field &src, Field &psi, RealD rsq) {
|
||||
|
||||
RealD cp = 0;
|
||||
|
||||
Field w(src._grid);
|
||||
Field r(src._grid);
|
||||
|
||||
// these should probably be made class members so that they are only allocated once, not in every restart
|
||||
std::vector<Field> v(RestartLength + 1, src._grid); for (auto &elem : v) elem = zero;
|
||||
std::vector<Field> z(RestartLength + 1, src._grid); for (auto &elem : z) elem = zero;
|
||||
|
||||
MatrixTimer.Start();
|
||||
LinOp.Op(psi, w);
|
||||
MatrixTimer.Stop();
|
||||
|
||||
LinalgTimer.Start();
|
||||
r = src - w;
|
||||
|
||||
gamma[0] = sqrt(norm2(r));
|
||||
|
||||
v[0] = (1. / gamma[0]) * r;
|
||||
LinalgTimer.Stop();
|
||||
|
||||
for (int i=0; i<RestartLength; i++) {
|
||||
|
||||
IterationCount++;
|
||||
|
||||
arnoldiStep(LinOp, v, z, w, i);
|
||||
|
||||
qrUpdate(i);
|
||||
|
||||
cp = std::norm(gamma[i+1]);
|
||||
|
||||
std::cout << GridLogIterative << "FlexibleGeneralisedMinimalResidual: Iteration " << IterationCount
|
||||
<< " residual " << cp << " target " << rsq << std::endl;
|
||||
|
||||
if ((i == RestartLength - 1) || (IterationCount == MaxIterations) || (cp <= rsq)) {
|
||||
|
||||
computeSolution(z, psi, i);
|
||||
|
||||
return cp;
|
||||
}
|
||||
}
|
||||
|
||||
assert(0); // Never reached
|
||||
return cp;
|
||||
}
|
||||
|
||||
void arnoldiStep(LinearOperatorBase<Field> &LinOp, std::vector<Field> &v, std::vector<Field> &z, Field &w, int iter) {
|
||||
|
||||
PrecTimer.Start();
|
||||
Preconditioner(v[iter], z[iter]);
|
||||
PrecTimer.Stop();
|
||||
|
||||
MatrixTimer.Start();
|
||||
LinOp.Op(z[iter], w);
|
||||
MatrixTimer.Stop();
|
||||
|
||||
LinalgTimer.Start();
|
||||
for (int i = 0; i <= iter; ++i) {
|
||||
H(iter, i) = innerProduct(v[i], w);
|
||||
w = w - H(iter, i) * v[i];
|
||||
}
|
||||
|
||||
H(iter, iter + 1) = sqrt(norm2(w));
|
||||
v[iter + 1] = (1. / H(iter, iter + 1)) * w;
|
||||
LinalgTimer.Stop();
|
||||
}
|
||||
|
||||
void qrUpdate(int iter) {
|
||||
|
||||
QrTimer.Start();
|
||||
for (int i = 0; i < iter ; ++i) {
|
||||
auto tmp = -s[i] * H(iter, i) + c[i] * H(iter, i + 1);
|
||||
H(iter, i) = std::conj(c[i]) * H(iter, i) + std::conj(s[i]) * H(iter, i + 1);
|
||||
H(iter, i + 1) = tmp;
|
||||
}
|
||||
|
||||
// Compute new Givens Rotation
|
||||
ComplexD nu = sqrt(std::norm(H(iter, iter)) + std::norm(H(iter, iter + 1)));
|
||||
c[iter] = H(iter, iter) / nu;
|
||||
s[iter] = H(iter, iter + 1) / nu;
|
||||
|
||||
// Apply new Givens rotation
|
||||
H(iter, iter) = nu;
|
||||
H(iter, iter + 1) = 0.;
|
||||
|
||||
gamma[iter + 1] = -s[iter] * gamma[iter];
|
||||
gamma[iter] = std::conj(c[iter]) * gamma[iter];
|
||||
QrTimer.Stop();
|
||||
}
|
||||
|
||||
void computeSolution(std::vector<Field> const &z, Field &psi, int iter) {
|
||||
|
||||
CompSolutionTimer.Start();
|
||||
for (int i = iter; i >= 0; i--) {
|
||||
y[i] = gamma[i];
|
||||
for (int k = i + 1; k <= iter; k++)
|
||||
y[i] = y[i] - H(k, i) * y[k];
|
||||
y[i] = y[i] / H(i, i);
|
||||
}
|
||||
|
||||
for (int i = 0; i <= iter; i++)
|
||||
psi = psi + z[i] * y[i];
|
||||
CompSolutionTimer.Stop();
|
||||
}
|
||||
};
|
||||
}
|
||||
#endif
|
242
Grid/algorithms/iterative/GeneralisedMinimalResidual.h
Normal file
242
Grid/algorithms/iterative/GeneralisedMinimalResidual.h
Normal file
@ -0,0 +1,242 @@
|
||||
/*************************************************************************************
|
||||
|
||||
Grid physics library, www.github.com/paboyle/Grid
|
||||
|
||||
Source file: ./lib/algorithms/iterative/GeneralisedMinimalResidual.h
|
||||
|
||||
Copyright (C) 2015
|
||||
|
||||
Author: Daniel Richtmann <daniel.richtmann@ur.de>
|
||||
|
||||
This program is free software; you can redistribute it and/or modify
|
||||
it under the terms of the GNU General Public License as published by
|
||||
the Free Software Foundation; either version 2 of the License, or
|
||||
(at your option) any later version.
|
||||
|
||||
This program is distributed in the hope that it will be useful,
|
||||
but WITHOUT ANY WARRANTY; without even the implied warranty of
|
||||
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
|
||||
GNU General Public License for more details.
|
||||
|
||||
You should have received a copy of the GNU General Public License along
|
||||
with this program; if not, write to the Free Software Foundation, Inc.,
|
||||
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
|
||||
|
||||
See the full license in the file "LICENSE" in the top level distribution
|
||||
directory
|
||||
*************************************************************************************/
|
||||
/* END LEGAL */
|
||||
#ifndef GRID_GENERALISED_MINIMAL_RESIDUAL_H
|
||||
#define GRID_GENERALISED_MINIMAL_RESIDUAL_H
|
||||
|
||||
namespace Grid {
|
||||
|
||||
template<class Field>
|
||||
class GeneralisedMinimalResidual : public OperatorFunction<Field> {
|
||||
public:
|
||||
bool ErrorOnNoConverge; // Throw an assert when GMRES fails to converge,
|
||||
// defaults to true
|
||||
|
||||
RealD Tolerance;
|
||||
|
||||
Integer MaxIterations;
|
||||
Integer RestartLength;
|
||||
Integer MaxNumberOfRestarts;
|
||||
Integer IterationCount; // Number of iterations the GMRES took to finish,
|
||||
// filled in upon completion
|
||||
|
||||
GridStopWatch MatrixTimer;
|
||||
GridStopWatch LinalgTimer;
|
||||
GridStopWatch QrTimer;
|
||||
GridStopWatch CompSolutionTimer;
|
||||
|
||||
Eigen::MatrixXcd H;
|
||||
|
||||
std::vector<std::complex<double>> y;
|
||||
std::vector<std::complex<double>> gamma;
|
||||
std::vector<std::complex<double>> c;
|
||||
std::vector<std::complex<double>> s;
|
||||
|
||||
GeneralisedMinimalResidual(RealD tol,
|
||||
Integer maxit,
|
||||
Integer restart_length,
|
||||
bool err_on_no_conv = true)
|
||||
: Tolerance(tol)
|
||||
, MaxIterations(maxit)
|
||||
, RestartLength(restart_length)
|
||||
, MaxNumberOfRestarts(MaxIterations/RestartLength + ((MaxIterations%RestartLength == 0) ? 0 : 1))
|
||||
, ErrorOnNoConverge(err_on_no_conv)
|
||||
, H(Eigen::MatrixXcd::Zero(RestartLength, RestartLength + 1)) // sizes taken from DD-αAMG code base
|
||||
, y(RestartLength + 1, 0.)
|
||||
, gamma(RestartLength + 1, 0.)
|
||||
, c(RestartLength + 1, 0.)
|
||||
, s(RestartLength + 1, 0.) {};
|
||||
|
||||
void operator()(LinearOperatorBase<Field> &LinOp, const Field &src, Field &psi) {
|
||||
|
||||
psi.checkerboard = src.checkerboard;
|
||||
conformable(psi, src);
|
||||
|
||||
RealD guess = norm2(psi);
|
||||
assert(std::isnan(guess) == 0);
|
||||
|
||||
RealD cp;
|
||||
RealD ssq = norm2(src);
|
||||
RealD rsq = Tolerance * Tolerance * ssq;
|
||||
|
||||
Field r(src._grid);
|
||||
|
||||
std::cout << std::setprecision(4) << std::scientific;
|
||||
std::cout << GridLogIterative << "GeneralisedMinimalResidual: guess " << guess << std::endl;
|
||||
std::cout << GridLogIterative << "GeneralisedMinimalResidual: src " << ssq << std::endl;
|
||||
|
||||
MatrixTimer.Reset();
|
||||
LinalgTimer.Reset();
|
||||
QrTimer.Reset();
|
||||
CompSolutionTimer.Reset();
|
||||
|
||||
GridStopWatch SolverTimer;
|
||||
SolverTimer.Start();
|
||||
|
||||
IterationCount = 0;
|
||||
|
||||
for (int k=0; k<MaxNumberOfRestarts; k++) {
|
||||
|
||||
cp = outerLoopBody(LinOp, src, psi, rsq);
|
||||
|
||||
// Stopping condition
|
||||
if (cp <= rsq) {
|
||||
|
||||
SolverTimer.Stop();
|
||||
|
||||
LinOp.Op(psi,r);
|
||||
axpy(r,-1.0,src,r);
|
||||
|
||||
RealD srcnorm = sqrt(ssq);
|
||||
RealD resnorm = sqrt(norm2(r));
|
||||
RealD true_residual = resnorm / srcnorm;
|
||||
|
||||
std::cout << GridLogMessage << "GeneralisedMinimalResidual: Converged on iteration " << IterationCount
|
||||
<< " computed residual " << sqrt(cp / ssq)
|
||||
<< " true residual " << true_residual
|
||||
<< " target " << Tolerance << std::endl;
|
||||
|
||||
std::cout << GridLogMessage << "GMRES Time elapsed: Total " << SolverTimer.Elapsed() << std::endl;
|
||||
std::cout << GridLogMessage << "GMRES Time elapsed: Matrix " << MatrixTimer.Elapsed() << std::endl;
|
||||
std::cout << GridLogMessage << "GMRES Time elapsed: Linalg " << LinalgTimer.Elapsed() << std::endl;
|
||||
std::cout << GridLogMessage << "GMRES Time elapsed: QR " << QrTimer.Elapsed() << std::endl;
|
||||
std::cout << GridLogMessage << "GMRES Time elapsed: CompSol " << CompSolutionTimer.Elapsed() << std::endl;
|
||||
return;
|
||||
}
|
||||
}
|
||||
|
||||
std::cout << GridLogMessage << "GeneralisedMinimalResidual did NOT converge" << std::endl;
|
||||
|
||||
if (ErrorOnNoConverge)
|
||||
assert(0);
|
||||
}
|
||||
|
||||
RealD outerLoopBody(LinearOperatorBase<Field> &LinOp, const Field &src, Field &psi, RealD rsq) {
|
||||
|
||||
RealD cp = 0;
|
||||
|
||||
Field w(src._grid);
|
||||
Field r(src._grid);
|
||||
|
||||
// this should probably be made a class member so that it is only allocated once, not in every restart
|
||||
std::vector<Field> v(RestartLength + 1, src._grid); for (auto &elem : v) elem = zero;
|
||||
|
||||
MatrixTimer.Start();
|
||||
LinOp.Op(psi, w);
|
||||
MatrixTimer.Stop();
|
||||
|
||||
LinalgTimer.Start();
|
||||
r = src - w;
|
||||
|
||||
gamma[0] = sqrt(norm2(r));
|
||||
|
||||
v[0] = (1. / gamma[0]) * r;
|
||||
LinalgTimer.Stop();
|
||||
|
||||
for (int i=0; i<RestartLength; i++) {
|
||||
|
||||
IterationCount++;
|
||||
|
||||
arnoldiStep(LinOp, v, w, i);
|
||||
|
||||
qrUpdate(i);
|
||||
|
||||
cp = std::norm(gamma[i+1]);
|
||||
|
||||
std::cout << GridLogIterative << "GeneralisedMinimalResidual: Iteration " << IterationCount
|
||||
<< " residual " << cp << " target " << rsq << std::endl;
|
||||
|
||||
if ((i == RestartLength - 1) || (IterationCount == MaxIterations) || (cp <= rsq)) {
|
||||
|
||||
computeSolution(v, psi, i);
|
||||
|
||||
return cp;
|
||||
}
|
||||
}
|
||||
|
||||
assert(0); // Never reached
|
||||
return cp;
|
||||
}
|
||||
|
||||
void arnoldiStep(LinearOperatorBase<Field> &LinOp, std::vector<Field> &v, Field &w, int iter) {
|
||||
|
||||
MatrixTimer.Start();
|
||||
LinOp.Op(v[iter], w);
|
||||
MatrixTimer.Stop();
|
||||
|
||||
LinalgTimer.Start();
|
||||
for (int i = 0; i <= iter; ++i) {
|
||||
H(iter, i) = innerProduct(v[i], w);
|
||||
w = w - H(iter, i) * v[i];
|
||||
}
|
||||
|
||||
H(iter, iter + 1) = sqrt(norm2(w));
|
||||
v[iter + 1] = (1. / H(iter, iter + 1)) * w;
|
||||
LinalgTimer.Stop();
|
||||
}
|
||||
|
||||
void qrUpdate(int iter) {
|
||||
|
||||
QrTimer.Start();
|
||||
for (int i = 0; i < iter ; ++i) {
|
||||
auto tmp = -s[i] * H(iter, i) + c[i] * H(iter, i + 1);
|
||||
H(iter, i) = std::conj(c[i]) * H(iter, i) + std::conj(s[i]) * H(iter, i + 1);
|
||||
H(iter, i + 1) = tmp;
|
||||
}
|
||||
|
||||
// Compute new Givens Rotation
|
||||
ComplexD nu = sqrt(std::norm(H(iter, iter)) + std::norm(H(iter, iter + 1)));
|
||||
c[iter] = H(iter, iter) / nu;
|
||||
s[iter] = H(iter, iter + 1) / nu;
|
||||
|
||||
// Apply new Givens rotation
|
||||
H(iter, iter) = nu;
|
||||
H(iter, iter + 1) = 0.;
|
||||
|
||||
gamma[iter + 1] = -s[iter] * gamma[iter];
|
||||
gamma[iter] = std::conj(c[iter]) * gamma[iter];
|
||||
QrTimer.Stop();
|
||||
}
|
||||
|
||||
void computeSolution(std::vector<Field> const &v, Field &psi, int iter) {
|
||||
|
||||
CompSolutionTimer.Start();
|
||||
for (int i = iter; i >= 0; i--) {
|
||||
y[i] = gamma[i];
|
||||
for (int k = i + 1; k <= iter; k++)
|
||||
y[i] = y[i] - H(k, i) * y[k];
|
||||
y[i] = y[i] / H(i, i);
|
||||
}
|
||||
|
||||
for (int i = 0; i <= iter; i++)
|
||||
psi = psi + v[i] * y[i];
|
||||
CompSolutionTimer.Stop();
|
||||
}
|
||||
};
|
||||
}
|
||||
#endif
|
@ -57,9 +57,8 @@ void basisRotate(std::vector<Field> &basis,Eigen::MatrixXd& Qt,int j0, int j1, i
|
||||
|
||||
parallel_region
|
||||
{
|
||||
Vector < vobj > B; // Thread private
|
||||
|
||||
PARALLEL_CRITICAL { B.resize(Nm); }
|
||||
std::vector < vobj , commAllocator<vobj> > B(Nm); // Thread private
|
||||
|
||||
parallel_for_internal(int ss=0;ss < grid->oSites();ss++){
|
||||
for(int j=j0; j<j1; ++j) B[j]=0.;
|
@ -285,9 +285,11 @@ public:
|
||||
};
|
||||
|
||||
void Orthogonalise(void ) {
|
||||
CoarseScalar InnerProd(_CoarseGrid);
|
||||
blockOrthogonalise(InnerProd,subspace);std::cout << GridLogMessage <<" Gramm-Schmidt pass 1"<<std::endl;
|
||||
blockOrthogonalise(InnerProd,subspace);std::cout << GridLogMessage <<" Gramm-Schmidt pass 2"<<std::endl;
|
||||
CoarseScalar InnerProd(_CoarseGrid);
|
||||
std::cout << GridLogMessage <<" Gramm-Schmidt pass 1"<<std::endl;
|
||||
blockOrthogonalise(InnerProd,subspace);
|
||||
std::cout << GridLogMessage <<" Gramm-Schmidt pass 2"<<std::endl;
|
||||
blockOrthogonalise(InnerProd,subspace);
|
||||
};
|
||||
|
||||
template<typename T> static RealD normalise(T& v)
|
||||
@ -333,7 +335,7 @@ public:
|
||||
// create a smoother and see if we can get a cheap convergence test and smooth inside the IRL
|
||||
//////////////////////////////////////////////////////////////////////////////////////////////////
|
||||
Chebyshev<FineField> ChebySmooth(cheby_smooth);
|
||||
ProjectedFunctionHermOp<Fobj,CComplex,nbasis> ChebyOp (ChebySmooth,_FineOp,_subspace);
|
||||
ProjectedFunctionHermOp<Fobj,CComplex,nbasis> ChebyOp (ChebySmooth,_FineOp,subspace);
|
||||
ImplicitlyRestartedLanczosSmoothedTester<Fobj,CComplex,nbasis> ChebySmoothTester(ChebyOp,ChebySmooth,_FineOp,subspace,relax);
|
||||
|
||||
for(int k=0;k<evec_coarse.size();k++){
|
||||
@ -374,14 +376,14 @@ public:
|
||||
RealD MaxIt, RealD betastp, int MinRes)
|
||||
{
|
||||
Chebyshev<FineField> Cheby(cheby_op);
|
||||
ProjectedHermOp<Fobj,CComplex,nbasis> Op(_FineOp,_subspace);
|
||||
ProjectedFunctionHermOp<Fobj,CComplex,nbasis> ChebyOp (Cheby,_FineOp,_subspace);
|
||||
ProjectedHermOp<Fobj,CComplex,nbasis> Op(_FineOp,subspace);
|
||||
ProjectedFunctionHermOp<Fobj,CComplex,nbasis> ChebyOp (Cheby,_FineOp,subspace);
|
||||
//////////////////////////////////////////////////////////////////////////////////////////////////
|
||||
// create a smoother and see if we can get a cheap convergence test and smooth inside the IRL
|
||||
//////////////////////////////////////////////////////////////////////////////////////////////////
|
||||
|
||||
Chebyshev<FineField> ChebySmooth(cheby_smooth);
|
||||
ImplicitlyRestartedLanczosSmoothedTester<Fobj,CComplex,nbasis> ChebySmoothTester(ChebyOp,ChebySmooth,_FineOp,_subspace,relax);
|
||||
ImplicitlyRestartedLanczosSmoothedTester<Fobj,CComplex,nbasis> ChebySmoothTester(ChebyOp,ChebySmooth,_FineOp,subspace,relax);
|
||||
|
||||
evals_coarse.resize(Nm);
|
||||
evec_coarse.resize(Nm,_CoarseGrid);
|
156
Grid/algorithms/iterative/MinimalResidual.h
Normal file
156
Grid/algorithms/iterative/MinimalResidual.h
Normal file
@ -0,0 +1,156 @@
|
||||
/*************************************************************************************
|
||||
|
||||
Grid physics library, www.github.com/paboyle/Grid
|
||||
|
||||
Source file: ./lib/algorithms/iterative/MinimalResidual.h
|
||||
|
||||
Copyright (C) 2015
|
||||
|
||||
Author: Daniel Richtmann <daniel.richtmann@ur.de>
|
||||
|
||||
This program is free software; you can redistribute it and/or modify
|
||||
it under the terms of the GNU General Public License as published by
|
||||
the Free Software Foundation; either version 2 of the License, or
|
||||
(at your option) any later version.
|
||||
|
||||
This program is distributed in the hope that it will be useful,
|
||||
but WITHOUT ANY WARRANTY; without even the implied warranty of
|
||||
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
|
||||
GNU General Public License for more details.
|
||||
|
||||
You should have received a copy of the GNU General Public License along
|
||||
with this program; if not, write to the Free Software Foundation, Inc.,
|
||||
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
|
||||
|
||||
See the full license in the file "LICENSE" in the top level distribution
|
||||
directory
|
||||
*************************************************************************************/
|
||||
/* END LEGAL */
|
||||
#ifndef GRID_MINIMAL_RESIDUAL_H
|
||||
#define GRID_MINIMAL_RESIDUAL_H
|
||||
|
||||
namespace Grid {
|
||||
|
||||
template<class Field> class MinimalResidual : public OperatorFunction<Field> {
|
||||
public:
|
||||
bool ErrorOnNoConverge; // throw an assert when the MR fails to converge.
|
||||
// Defaults true.
|
||||
RealD Tolerance;
|
||||
Integer MaxIterations;
|
||||
RealD overRelaxParam;
|
||||
Integer IterationsToComplete; // Number of iterations the MR took to finish.
|
||||
// Filled in upon completion
|
||||
|
||||
MinimalResidual(RealD tol, Integer maxit, Real ovrelparam = 1.0, bool err_on_no_conv = true)
|
||||
: Tolerance(tol), MaxIterations(maxit), overRelaxParam(ovrelparam), ErrorOnNoConverge(err_on_no_conv){};
|
||||
|
||||
void operator()(LinearOperatorBase<Field> &Linop, const Field &src, Field &psi) {
|
||||
|
||||
psi.checkerboard = src.checkerboard;
|
||||
conformable(psi, src);
|
||||
|
||||
Complex a, c;
|
||||
Real d;
|
||||
|
||||
Field Mr(src);
|
||||
Field r(src);
|
||||
|
||||
// Initial residual computation & set up
|
||||
RealD guess = norm2(psi);
|
||||
assert(std::isnan(guess) == 0);
|
||||
|
||||
RealD ssq = norm2(src);
|
||||
RealD rsq = Tolerance * Tolerance * ssq;
|
||||
|
||||
Linop.Op(psi, Mr);
|
||||
|
||||
r = src - Mr;
|
||||
|
||||
RealD cp = norm2(r);
|
||||
|
||||
std::cout << std::setprecision(4) << std::scientific;
|
||||
std::cout << GridLogIterative << "MinimalResidual: guess " << guess << std::endl;
|
||||
std::cout << GridLogIterative << "MinimalResidual: src " << ssq << std::endl;
|
||||
std::cout << GridLogIterative << "MinimalResidual: mp " << d << std::endl;
|
||||
std::cout << GridLogIterative << "MinimalResidual: cp,r " << cp << std::endl;
|
||||
|
||||
if (cp <= rsq) {
|
||||
return;
|
||||
}
|
||||
|
||||
std::cout << GridLogIterative << "MinimalResidual: k=0 residual " << cp << " target " << rsq << std::endl;
|
||||
|
||||
GridStopWatch LinalgTimer;
|
||||
GridStopWatch MatrixTimer;
|
||||
GridStopWatch SolverTimer;
|
||||
|
||||
SolverTimer.Start();
|
||||
int k;
|
||||
for (k = 1; k <= MaxIterations; k++) {
|
||||
|
||||
MatrixTimer.Start();
|
||||
Linop.Op(r, Mr);
|
||||
MatrixTimer.Stop();
|
||||
|
||||
LinalgTimer.Start();
|
||||
|
||||
c = innerProduct(Mr, r);
|
||||
|
||||
d = norm2(Mr);
|
||||
|
||||
a = c / d;
|
||||
|
||||
a = a * overRelaxParam;
|
||||
|
||||
psi = psi + r * a;
|
||||
|
||||
r = r - Mr * a;
|
||||
|
||||
cp = norm2(r);
|
||||
|
||||
LinalgTimer.Stop();
|
||||
|
||||
std::cout << GridLogIterative << "MinimalResidual: Iteration " << k
|
||||
<< " residual " << cp << " target " << rsq << std::endl;
|
||||
std::cout << GridLogDebug << "a = " << a << " c = " << c << " d = " << d << std::endl;
|
||||
|
||||
// Stopping condition
|
||||
if (cp <= rsq) {
|
||||
SolverTimer.Stop();
|
||||
|
||||
Linop.Op(psi, Mr);
|
||||
r = src - Mr;
|
||||
|
||||
RealD srcnorm = sqrt(ssq);
|
||||
RealD resnorm = sqrt(norm2(r));
|
||||
RealD true_residual = resnorm / srcnorm;
|
||||
|
||||
std::cout << GridLogMessage << "MinimalResidual Converged on iteration " << k
|
||||
<< " computed residual " << sqrt(cp / ssq)
|
||||
<< " true residual " << true_residual
|
||||
<< " target " << Tolerance << std::endl;
|
||||
|
||||
std::cout << GridLogMessage << "MR Time elapsed: Total " << SolverTimer.Elapsed() << std::endl;
|
||||
std::cout << GridLogMessage << "MR Time elapsed: Matrix " << MatrixTimer.Elapsed() << std::endl;
|
||||
std::cout << GridLogMessage << "MR Time elapsed: Linalg " << LinalgTimer.Elapsed() << std::endl;
|
||||
|
||||
if (ErrorOnNoConverge)
|
||||
assert(true_residual / Tolerance < 10000.0);
|
||||
|
||||
IterationsToComplete = k;
|
||||
|
||||
return;
|
||||
}
|
||||
}
|
||||
|
||||
std::cout << GridLogMessage << "MinimalResidual did NOT converge"
|
||||
<< std::endl;
|
||||
|
||||
if (ErrorOnNoConverge)
|
||||
assert(0);
|
||||
|
||||
IterationsToComplete = k;
|
||||
}
|
||||
};
|
||||
} // namespace Grid
|
||||
#endif
|
@ -0,0 +1,273 @@
|
||||
/*************************************************************************************
|
||||
|
||||
Grid physics library, www.github.com/paboyle/Grid
|
||||
|
||||
Source file: ./lib/algorithms/iterative/MixedPrecisionFlexibleGeneralisedMinimalResidual.h
|
||||
|
||||
Copyright (C) 2015
|
||||
|
||||
Author: Daniel Richtmann <daniel.richtmann@ur.de>
|
||||
|
||||
This program is free software; you can redistribute it and/or modify
|
||||
it under the terms of the GNU General Public License as published by
|
||||
the Free Software Foundation; either version 2 of the License, or
|
||||
(at your option) any later version.
|
||||
|
||||
This program is distributed in the hope that it will be useful,
|
||||
but WITHOUT ANY WARRANTY; without even the implied warranty of
|
||||
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
|
||||
GNU General Public License for more details.
|
||||
|
||||
You should have received a copy of the GNU General Public License along
|
||||
with this program; if not, write to the Free Software Foundation, Inc.,
|
||||
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
|
||||
|
||||
See the full license in the file "LICENSE" in the top level distribution
|
||||
directory
|
||||
*************************************************************************************/
|
||||
/* END LEGAL */
|
||||
#ifndef GRID_MIXED_PRECISION_FLEXIBLE_GENERALISED_MINIMAL_RESIDUAL_H
|
||||
#define GRID_MIXED_PRECISION_FLEXIBLE_GENERALISED_MINIMAL_RESIDUAL_H
|
||||
|
||||
namespace Grid {
|
||||
|
||||
template<class FieldD, class FieldF, typename std::enable_if<getPrecision<FieldD>::value == 2, int>::type = 0, typename std::enable_if< getPrecision<FieldF>::value == 1, int>::type = 0>
|
||||
class MixedPrecisionFlexibleGeneralisedMinimalResidual : public OperatorFunction<FieldD> {
|
||||
public:
|
||||
bool ErrorOnNoConverge; // Throw an assert when MPFGMRES fails to converge,
|
||||
// defaults to true
|
||||
|
||||
RealD Tolerance;
|
||||
|
||||
Integer MaxIterations;
|
||||
Integer RestartLength;
|
||||
Integer MaxNumberOfRestarts;
|
||||
Integer IterationCount; // Number of iterations the MPFGMRES took to finish,
|
||||
// filled in upon completion
|
||||
|
||||
GridStopWatch MatrixTimer;
|
||||
GridStopWatch PrecTimer;
|
||||
GridStopWatch LinalgTimer;
|
||||
GridStopWatch QrTimer;
|
||||
GridStopWatch CompSolutionTimer;
|
||||
GridStopWatch ChangePrecTimer;
|
||||
|
||||
Eigen::MatrixXcd H;
|
||||
|
||||
std::vector<std::complex<double>> y;
|
||||
std::vector<std::complex<double>> gamma;
|
||||
std::vector<std::complex<double>> c;
|
||||
std::vector<std::complex<double>> s;
|
||||
|
||||
GridBase* SinglePrecGrid;
|
||||
|
||||
LinearFunction<FieldF> &Preconditioner;
|
||||
|
||||
MixedPrecisionFlexibleGeneralisedMinimalResidual(RealD tol,
|
||||
Integer maxit,
|
||||
GridBase * sp_grid,
|
||||
LinearFunction<FieldF> &Prec,
|
||||
Integer restart_length,
|
||||
bool err_on_no_conv = true)
|
||||
: Tolerance(tol)
|
||||
, MaxIterations(maxit)
|
||||
, RestartLength(restart_length)
|
||||
, MaxNumberOfRestarts(MaxIterations/RestartLength + ((MaxIterations%RestartLength == 0) ? 0 : 1))
|
||||
, ErrorOnNoConverge(err_on_no_conv)
|
||||
, H(Eigen::MatrixXcd::Zero(RestartLength, RestartLength + 1)) // sizes taken from DD-αAMG code base
|
||||
, y(RestartLength + 1, 0.)
|
||||
, gamma(RestartLength + 1, 0.)
|
||||
, c(RestartLength + 1, 0.)
|
||||
, s(RestartLength + 1, 0.)
|
||||
, SinglePrecGrid(sp_grid)
|
||||
, Preconditioner(Prec) {};
|
||||
|
||||
void operator()(LinearOperatorBase<FieldD> &LinOp, const FieldD &src, FieldD &psi) {
|
||||
|
||||
psi.checkerboard = src.checkerboard;
|
||||
conformable(psi, src);
|
||||
|
||||
RealD guess = norm2(psi);
|
||||
assert(std::isnan(guess) == 0);
|
||||
|
||||
RealD cp;
|
||||
RealD ssq = norm2(src);
|
||||
RealD rsq = Tolerance * Tolerance * ssq;
|
||||
|
||||
FieldD r(src._grid);
|
||||
|
||||
std::cout << std::setprecision(4) << std::scientific;
|
||||
std::cout << GridLogIterative << "MPFGMRES: guess " << guess << std::endl;
|
||||
std::cout << GridLogIterative << "MPFGMRES: src " << ssq << std::endl;
|
||||
|
||||
PrecTimer.Reset();
|
||||
MatrixTimer.Reset();
|
||||
LinalgTimer.Reset();
|
||||
QrTimer.Reset();
|
||||
CompSolutionTimer.Reset();
|
||||
ChangePrecTimer.Reset();
|
||||
|
||||
GridStopWatch SolverTimer;
|
||||
SolverTimer.Start();
|
||||
|
||||
IterationCount = 0;
|
||||
|
||||
for (int k=0; k<MaxNumberOfRestarts; k++) {
|
||||
|
||||
cp = outerLoopBody(LinOp, src, psi, rsq);
|
||||
|
||||
// Stopping condition
|
||||
if (cp <= rsq) {
|
||||
|
||||
SolverTimer.Stop();
|
||||
|
||||
LinOp.Op(psi,r);
|
||||
axpy(r,-1.0,src,r);
|
||||
|
||||
RealD srcnorm = sqrt(ssq);
|
||||
RealD resnorm = sqrt(norm2(r));
|
||||
RealD true_residual = resnorm / srcnorm;
|
||||
|
||||
std::cout << GridLogMessage << "MPFGMRES: Converged on iteration " << IterationCount
|
||||
<< " computed residual " << sqrt(cp / ssq)
|
||||
<< " true residual " << true_residual
|
||||
<< " target " << Tolerance << std::endl;
|
||||
|
||||
std::cout << GridLogMessage << "MPFGMRES Time elapsed: Total " << SolverTimer.Elapsed() << std::endl;
|
||||
std::cout << GridLogMessage << "MPFGMRES Time elapsed: Precon " << PrecTimer.Elapsed() << std::endl;
|
||||
std::cout << GridLogMessage << "MPFGMRES Time elapsed: Matrix " << MatrixTimer.Elapsed() << std::endl;
|
||||
std::cout << GridLogMessage << "MPFGMRES Time elapsed: Linalg " << LinalgTimer.Elapsed() << std::endl;
|
||||
std::cout << GridLogMessage << "MPFGMRES Time elapsed: QR " << QrTimer.Elapsed() << std::endl;
|
||||
std::cout << GridLogMessage << "MPFGMRES Time elapsed: CompSol " << CompSolutionTimer.Elapsed() << std::endl;
|
||||
std::cout << GridLogMessage << "MPFGMRES Time elapsed: PrecChange " << ChangePrecTimer.Elapsed() << std::endl;
|
||||
return;
|
||||
}
|
||||
}
|
||||
|
||||
std::cout << GridLogMessage << "MPFGMRES did NOT converge" << std::endl;
|
||||
|
||||
if (ErrorOnNoConverge)
|
||||
assert(0);
|
||||
}
|
||||
|
||||
RealD outerLoopBody(LinearOperatorBase<FieldD> &LinOp, const FieldD &src, FieldD &psi, RealD rsq) {
|
||||
|
||||
RealD cp = 0;
|
||||
|
||||
FieldD w(src._grid);
|
||||
FieldD r(src._grid);
|
||||
|
||||
// these should probably be made class members so that they are only allocated once, not in every restart
|
||||
std::vector<FieldD> v(RestartLength + 1, src._grid); for (auto &elem : v) elem = zero;
|
||||
std::vector<FieldD> z(RestartLength + 1, src._grid); for (auto &elem : z) elem = zero;
|
||||
|
||||
MatrixTimer.Start();
|
||||
LinOp.Op(psi, w);
|
||||
MatrixTimer.Stop();
|
||||
|
||||
LinalgTimer.Start();
|
||||
r = src - w;
|
||||
|
||||
gamma[0] = sqrt(norm2(r));
|
||||
|
||||
v[0] = (1. / gamma[0]) * r;
|
||||
LinalgTimer.Stop();
|
||||
|
||||
for (int i=0; i<RestartLength; i++) {
|
||||
|
||||
IterationCount++;
|
||||
|
||||
arnoldiStep(LinOp, v, z, w, i);
|
||||
|
||||
qrUpdate(i);
|
||||
|
||||
cp = std::norm(gamma[i+1]);
|
||||
|
||||
std::cout << GridLogIterative << "MPFGMRES: Iteration " << IterationCount
|
||||
<< " residual " << cp << " target " << rsq << std::endl;
|
||||
|
||||
if ((i == RestartLength - 1) || (IterationCount == MaxIterations) || (cp <= rsq)) {
|
||||
|
||||
computeSolution(z, psi, i);
|
||||
|
||||
return cp;
|
||||
}
|
||||
}
|
||||
|
||||
assert(0); // Never reached
|
||||
return cp;
|
||||
}
|
||||
|
||||
void arnoldiStep(LinearOperatorBase<FieldD> &LinOp, std::vector<FieldD> &v, std::vector<FieldD> &z, FieldD &w, int iter) {
|
||||
|
||||
FieldF v_f(SinglePrecGrid);
|
||||
FieldF z_f(SinglePrecGrid);
|
||||
|
||||
ChangePrecTimer.Start();
|
||||
precisionChange(v_f, v[iter]);
|
||||
precisionChange(z_f, z[iter]);
|
||||
ChangePrecTimer.Stop();
|
||||
|
||||
PrecTimer.Start();
|
||||
Preconditioner(v_f, z_f);
|
||||
PrecTimer.Stop();
|
||||
|
||||
ChangePrecTimer.Start();
|
||||
precisionChange(z[iter], z_f);
|
||||
ChangePrecTimer.Stop();
|
||||
|
||||
MatrixTimer.Start();
|
||||
LinOp.Op(z[iter], w);
|
||||
MatrixTimer.Stop();
|
||||
|
||||
LinalgTimer.Start();
|
||||
for (int i = 0; i <= iter; ++i) {
|
||||
H(iter, i) = innerProduct(v[i], w);
|
||||
w = w - H(iter, i) * v[i];
|
||||
}
|
||||
|
||||
H(iter, iter + 1) = sqrt(norm2(w));
|
||||
v[iter + 1] = (1. / H(iter, iter + 1)) * w;
|
||||
LinalgTimer.Stop();
|
||||
}
|
||||
|
||||
void qrUpdate(int iter) {
|
||||
|
||||
QrTimer.Start();
|
||||
for (int i = 0; i < iter ; ++i) {
|
||||
auto tmp = -s[i] * H(iter, i) + c[i] * H(iter, i + 1);
|
||||
H(iter, i) = std::conj(c[i]) * H(iter, i) + std::conj(s[i]) * H(iter, i + 1);
|
||||
H(iter, i + 1) = tmp;
|
||||
}
|
||||
|
||||
// Compute new Givens Rotation
|
||||
ComplexD nu = sqrt(std::norm(H(iter, iter)) + std::norm(H(iter, iter + 1)));
|
||||
c[iter] = H(iter, iter) / nu;
|
||||
s[iter] = H(iter, iter + 1) / nu;
|
||||
|
||||
// Apply new Givens rotation
|
||||
H(iter, iter) = nu;
|
||||
H(iter, iter + 1) = 0.;
|
||||
|
||||
gamma[iter + 1] = -s[iter] * gamma[iter];
|
||||
gamma[iter] = std::conj(c[iter]) * gamma[iter];
|
||||
QrTimer.Stop();
|
||||
}
|
||||
|
||||
void computeSolution(std::vector<FieldD> const &z, FieldD &psi, int iter) {
|
||||
|
||||
CompSolutionTimer.Start();
|
||||
for (int i = iter; i >= 0; i--) {
|
||||
y[i] = gamma[i];
|
||||
for (int k = i + 1; k <= iter; k++)
|
||||
y[i] = y[i] - H(k, i) * y[k];
|
||||
y[i] = y[i] / H(i, i);
|
||||
}
|
||||
|
||||
for (int i = 0; i <= iter; i++)
|
||||
psi = psi + z[i] * y[i];
|
||||
CompSolutionTimer.Stop();
|
||||
}
|
||||
};
|
||||
}
|
||||
#endif
|
45
Grid/algorithms/iterative/PowerMethod.h
Normal file
45
Grid/algorithms/iterative/PowerMethod.h
Normal file
@ -0,0 +1,45 @@
|
||||
#pragma once
|
||||
namespace Grid {
|
||||
template<class Field> class PowerMethod
|
||||
{
|
||||
public:
|
||||
|
||||
template<typename T> static RealD normalise(T& v)
|
||||
{
|
||||
RealD nn = norm2(v);
|
||||
nn = sqrt(nn);
|
||||
v = v * (1.0/nn);
|
||||
return nn;
|
||||
}
|
||||
|
||||
RealD operator()(LinearOperatorBase<Field> &HermOp, const Field &src)
|
||||
{
|
||||
GridBase *grid = src._grid;
|
||||
|
||||
// quickly get an idea of the largest eigenvalue to more properly normalize the residuum
|
||||
RealD evalMaxApprox = 0.0;
|
||||
auto src_n = src;
|
||||
auto tmp = src;
|
||||
const int _MAX_ITER_EST_ = 50;
|
||||
|
||||
for (int i=0;i<_MAX_ITER_EST_;i++) {
|
||||
|
||||
normalise(src_n);
|
||||
HermOp.HermOp(src_n,tmp);
|
||||
RealD vnum = real(innerProduct(src_n,tmp)); // HermOp.
|
||||
RealD vden = norm2(src_n);
|
||||
RealD na = vnum/vden;
|
||||
|
||||
if ( (fabs(evalMaxApprox/na - 1.0) < 0.01) || (i==_MAX_ITER_EST_-1) ) {
|
||||
evalMaxApprox = na;
|
||||
return evalMaxApprox;
|
||||
}
|
||||
evalMaxApprox = na;
|
||||
std::cout << GridLogMessage << " Approximation of largest eigenvalue: " << evalMaxApprox << std::endl;
|
||||
src_n = tmp;
|
||||
}
|
||||
assert(0);
|
||||
return 0;
|
||||
}
|
||||
};
|
||||
}
|
@ -139,8 +139,11 @@ namespace Grid {
|
||||
MatTimer.Start();
|
||||
Linop.HermOpAndNorm(psi,Az,zAz,zAAz);
|
||||
MatTimer.Stop();
|
||||
|
||||
LinalgTimer.Start();
|
||||
r=src-Az;
|
||||
|
||||
LinalgTimer.Stop();
|
||||
|
||||
/////////////////////
|
||||
// p = Prec(r)
|
||||
/////////////////////
|
||||
@ -152,8 +155,10 @@ namespace Grid {
|
||||
Linop.HermOp(z,tmp);
|
||||
MatTimer.Stop();
|
||||
|
||||
LinalgTimer.Start();
|
||||
ttmp=tmp;
|
||||
tmp=tmp-r;
|
||||
LinalgTimer.Stop();
|
||||
|
||||
/*
|
||||
std::cout<<GridLogMessage<<r<<std::endl;
|
||||
@ -166,12 +171,14 @@ namespace Grid {
|
||||
Linop.HermOpAndNorm(z,Az,zAz,zAAz);
|
||||
MatTimer.Stop();
|
||||
|
||||
LinalgTimer.Start();
|
||||
//p[0],q[0],qq[0]
|
||||
p[0]= z;
|
||||
q[0]= Az;
|
||||
qq[0]= zAAz;
|
||||
|
||||
cp =norm2(r);
|
||||
LinalgTimer.Stop();
|
||||
|
||||
for(int k=0;k<nstep;k++){
|
||||
|
||||
@ -181,12 +188,14 @@ namespace Grid {
|
||||
int peri_k = k %mmax;
|
||||
int peri_kp= kp%mmax;
|
||||
|
||||
LinalgTimer.Start();
|
||||
rq= real(innerProduct(r,q[peri_k])); // what if rAr not real?
|
||||
a = rq/qq[peri_k];
|
||||
|
||||
axpy(psi,a,p[peri_k],psi);
|
||||
|
||||
cp = axpy_norm(r,-a,q[peri_k],r);
|
||||
cp = axpy_norm(r,-a,q[peri_k],r);
|
||||
LinalgTimer.Stop();
|
||||
|
||||
if((k==nstep-1)||(cp<rsq)){
|
||||
return cp;
|
||||
@ -202,6 +211,8 @@ namespace Grid {
|
||||
Linop.HermOpAndNorm(z,Az,zAz,zAAz);
|
||||
Linop.HermOp(z,tmp);
|
||||
MatTimer.Stop();
|
||||
|
||||
LinalgTimer.Start();
|
||||
tmp=tmp-r;
|
||||
std::cout<<GridLogMessage<< " Preconditioner resid " <<sqrt(norm2(tmp)/norm2(r))<<std::endl;
|
||||
|
||||
@ -219,9 +230,9 @@ namespace Grid {
|
||||
|
||||
}
|
||||
qq[peri_kp]=norm2(q[peri_kp]); // could use axpy_norm
|
||||
|
||||
|
||||
LinalgTimer.Stop();
|
||||
}
|
||||
|
||||
assert(0); // never reached
|
||||
return cp;
|
||||
}
|
486
Grid/algorithms/iterative/SchurRedBlack.h
Normal file
486
Grid/algorithms/iterative/SchurRedBlack.h
Normal file
@ -0,0 +1,486 @@
|
||||
/*************************************************************************************
|
||||
|
||||
Grid physics library, www.github.com/paboyle/Grid
|
||||
|
||||
Source file: ./lib/algorithms/iterative/SchurRedBlack.h
|
||||
|
||||
Copyright (C) 2015
|
||||
|
||||
Author: Peter Boyle <paboyle@ph.ed.ac.uk>
|
||||
|
||||
This program is free software; you can redistribute it and/or modify
|
||||
it under the terms of the GNU General Public License as published by
|
||||
the Free Software Foundation; either version 2 of the License, or
|
||||
(at your option) any later version.
|
||||
|
||||
This program is distributed in the hope that it will be useful,
|
||||
but WITHOUT ANY WARRANTY; without even the implied warranty of
|
||||
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
|
||||
GNU General Public License for more details.
|
||||
|
||||
You should have received a copy of the GNU General Public License along
|
||||
with this program; if not, write to the Free Software Foundation, Inc.,
|
||||
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
|
||||
|
||||
See the full license in the file "LICENSE" in the top level distribution directory
|
||||
*************************************************************************************/
|
||||
/* END LEGAL */
|
||||
#ifndef GRID_SCHUR_RED_BLACK_H
|
||||
#define GRID_SCHUR_RED_BLACK_H
|
||||
|
||||
|
||||
/*
|
||||
* Red black Schur decomposition
|
||||
*
|
||||
* M = (Mee Meo) = (1 0 ) (Mee 0 ) (1 Mee^{-1} Meo)
|
||||
* (Moe Moo) (Moe Mee^-1 1 ) (0 Moo-Moe Mee^-1 Meo) (0 1 )
|
||||
* = L D U
|
||||
*
|
||||
* L^-1 = (1 0 )
|
||||
* (-MoeMee^{-1} 1 )
|
||||
* L^{dag} = ( 1 Mee^{-dag} Moe^{dag} )
|
||||
* ( 0 1 )
|
||||
* L^{-d} = ( 1 -Mee^{-dag} Moe^{dag} )
|
||||
* ( 0 1 )
|
||||
*
|
||||
* U^-1 = (1 -Mee^{-1} Meo)
|
||||
* (0 1 )
|
||||
* U^{dag} = ( 1 0)
|
||||
* (Meo^dag Mee^{-dag} 1)
|
||||
* U^{-dag} = ( 1 0)
|
||||
* (-Meo^dag Mee^{-dag} 1)
|
||||
***********************
|
||||
* M psi = eta
|
||||
***********************
|
||||
*Odd
|
||||
* i) D_oo psi_o = L^{-1} eta_o
|
||||
* eta_o' = (D_oo)^dag (eta_o - Moe Mee^{-1} eta_e)
|
||||
*
|
||||
* Wilson:
|
||||
* (D_oo)^{\dag} D_oo psi_o = (D_oo)^dag L^{-1} eta_o
|
||||
* Stag:
|
||||
* D_oo psi_o = L^{-1} eta = (eta_o - Moe Mee^{-1} eta_e)
|
||||
*
|
||||
* L^-1 eta_o= (1 0 ) (e
|
||||
* (-MoeMee^{-1} 1 )
|
||||
*
|
||||
*Even
|
||||
* ii) Mee psi_e + Meo psi_o = src_e
|
||||
*
|
||||
* => sol_e = M_ee^-1 * ( src_e - Meo sol_o )...
|
||||
*
|
||||
*
|
||||
* TODO: Other options:
|
||||
*
|
||||
* a) change checkerboards for Schur e<->o
|
||||
*
|
||||
* Left precon by Moo^-1
|
||||
* b) Doo^{dag} M_oo^-dag Moo^-1 Doo psi_0 = (D_oo)^dag M_oo^-dag Moo^-1 L^{-1} eta_o
|
||||
* eta_o' = (D_oo)^dag M_oo^-dag Moo^-1 (eta_o - Moe Mee^{-1} eta_e)
|
||||
*
|
||||
* Right precon by Moo^-1
|
||||
* c) M_oo^-dag Doo^{dag} Doo Moo^-1 phi_0 = M_oo^-dag (D_oo)^dag L^{-1} eta_o
|
||||
* eta_o' = M_oo^-dag (D_oo)^dag (eta_o - Moe Mee^{-1} eta_e)
|
||||
* psi_o = M_oo^-1 phi_o
|
||||
* TODO: Deflation
|
||||
*/
|
||||
namespace Grid {
|
||||
|
||||
///////////////////////////////////////////////////////////////////////////////////////////////////////
|
||||
// Use base class to share code
|
||||
///////////////////////////////////////////////////////////////////////////////////////////////////////
|
||||
///////////////////////////////////////////////////////////////////////////////////////////////////////
|
||||
// Take a matrix and form a Red Black solver calling a Herm solver
|
||||
// Use of RB info prevents making SchurRedBlackSolve conform to standard interface
|
||||
///////////////////////////////////////////////////////////////////////////////////////////////////////
|
||||
template<class Field> class SchurRedBlackBase {
|
||||
protected:
|
||||
typedef CheckerBoardedSparseMatrixBase<Field> Matrix;
|
||||
OperatorFunction<Field> & _HermitianRBSolver;
|
||||
int CBfactorise;
|
||||
bool subGuess;
|
||||
bool useSolnAsInitGuess; // if true user-supplied solution vector is used as initial guess for solver
|
||||
public:
|
||||
|
||||
SchurRedBlackBase(OperatorFunction<Field> &HermitianRBSolver, const bool initSubGuess = false,
|
||||
const bool _solnAsInitGuess = false) :
|
||||
_HermitianRBSolver(HermitianRBSolver),
|
||||
useSolnAsInitGuess(_solnAsInitGuess)
|
||||
{
|
||||
CBfactorise = 0;
|
||||
subtractGuess(initSubGuess);
|
||||
};
|
||||
void subtractGuess(const bool initSubGuess)
|
||||
{
|
||||
subGuess = initSubGuess;
|
||||
}
|
||||
bool isSubtractGuess(void)
|
||||
{
|
||||
return subGuess;
|
||||
}
|
||||
|
||||
/////////////////////////////////////////////////////////////
|
||||
// Shared code
|
||||
/////////////////////////////////////////////////////////////
|
||||
void operator() (Matrix & _Matrix,const Field &in, Field &out){
|
||||
ZeroGuesser<Field> guess;
|
||||
(*this)(_Matrix,in,out,guess);
|
||||
}
|
||||
void operator()(Matrix &_Matrix, const std::vector<Field> &in, std::vector<Field> &out)
|
||||
{
|
||||
ZeroGuesser<Field> guess;
|
||||
(*this)(_Matrix,in,out,guess);
|
||||
}
|
||||
|
||||
template<class Guesser>
|
||||
void operator()(Matrix &_Matrix, const std::vector<Field> &in, std::vector<Field> &out,Guesser &guess)
|
||||
{
|
||||
GridBase *grid = _Matrix.RedBlackGrid();
|
||||
GridBase *fgrid= _Matrix.Grid();
|
||||
int nblock = in.size();
|
||||
|
||||
std::vector<Field> src_o(nblock,grid);
|
||||
std::vector<Field> sol_o(nblock,grid);
|
||||
|
||||
std::vector<Field> guess_save;
|
||||
|
||||
Field resid(fgrid);
|
||||
Field tmp(grid);
|
||||
|
||||
////////////////////////////////////////////////
|
||||
// Prepare RedBlack source
|
||||
////////////////////////////////////////////////
|
||||
for(int b=0;b<nblock;b++){
|
||||
RedBlackSource(_Matrix,in[b],tmp,src_o[b]);
|
||||
}
|
||||
////////////////////////////////////////////////
|
||||
// Make the guesses
|
||||
////////////////////////////////////////////////
|
||||
if ( subGuess ) guess_save.resize(nblock,grid);
|
||||
|
||||
for(int b=0;b<nblock;b++){
|
||||
if(useSolnAsInitGuess) {
|
||||
pickCheckerboard(Odd, sol_o[b], out[b]);
|
||||
} else {
|
||||
guess(src_o[b],sol_o[b]);
|
||||
}
|
||||
|
||||
if ( subGuess ) {
|
||||
guess_save[b] = sol_o[b];
|
||||
}
|
||||
}
|
||||
//////////////////////////////////////////////////////////////
|
||||
// Call the block solver
|
||||
//////////////////////////////////////////////////////////////
|
||||
std::cout<<GridLogMessage << "SchurRedBlackBase calling the solver for "<<nblock<<" RHS" <<std::endl;
|
||||
RedBlackSolve(_Matrix,src_o,sol_o);
|
||||
|
||||
////////////////////////////////////////////////
|
||||
// A2A boolean behavioural control & reconstruct other checkerboard
|
||||
////////////////////////////////////////////////
|
||||
for(int b=0;b<nblock;b++) {
|
||||
|
||||
if (subGuess) sol_o[b] = sol_o[b] - guess_save[b];
|
||||
|
||||
///////// Needs even source //////////////
|
||||
pickCheckerboard(Even,tmp,in[b]);
|
||||
RedBlackSolution(_Matrix,sol_o[b],tmp,out[b]);
|
||||
|
||||
/////////////////////////////////////////////////
|
||||
// Check unprec residual if possible
|
||||
/////////////////////////////////////////////////
|
||||
if ( ! subGuess ) {
|
||||
_Matrix.M(out[b],resid);
|
||||
resid = resid-in[b];
|
||||
RealD ns = norm2(in[b]);
|
||||
RealD nr = norm2(resid);
|
||||
|
||||
std::cout<<GridLogMessage<< "SchurRedBlackBase solver true unprec resid["<<b<<"] "<<std::sqrt(nr/ns) << std::endl;
|
||||
} else {
|
||||
std::cout<<GridLogMessage<< "SchurRedBlackBase Guess subtracted after solve["<<b<<"] " << std::endl;
|
||||
}
|
||||
|
||||
}
|
||||
}
|
||||
template<class Guesser>
|
||||
void operator() (Matrix & _Matrix,const Field &in, Field &out,Guesser &guess){
|
||||
|
||||
// FIXME CGdiagonalMee not implemented virtual function
|
||||
// FIXME use CBfactorise to control schur decomp
|
||||
GridBase *grid = _Matrix.RedBlackGrid();
|
||||
GridBase *fgrid= _Matrix.Grid();
|
||||
|
||||
Field resid(fgrid);
|
||||
Field src_o(grid);
|
||||
Field src_e(grid);
|
||||
Field sol_o(grid);
|
||||
|
||||
////////////////////////////////////////////////
|
||||
// RedBlack source
|
||||
////////////////////////////////////////////////
|
||||
RedBlackSource(_Matrix,in,src_e,src_o);
|
||||
|
||||
////////////////////////////////
|
||||
// Construct the guess
|
||||
////////////////////////////////
|
||||
if(useSolnAsInitGuess) {
|
||||
pickCheckerboard(Odd, sol_o, out);
|
||||
} else {
|
||||
guess(src_o,sol_o);
|
||||
}
|
||||
|
||||
Field guess_save(grid);
|
||||
guess_save = sol_o;
|
||||
|
||||
//////////////////////////////////////////////////////////////
|
||||
// Call the red-black solver
|
||||
//////////////////////////////////////////////////////////////
|
||||
RedBlackSolve(_Matrix,src_o,sol_o);
|
||||
|
||||
////////////////////////////////////////////////
|
||||
// Fionn A2A boolean behavioural control
|
||||
////////////////////////////////////////////////
|
||||
if (subGuess) sol_o= sol_o-guess_save;
|
||||
|
||||
///////////////////////////////////////////////////
|
||||
// RedBlack solution needs the even source
|
||||
///////////////////////////////////////////////////
|
||||
RedBlackSolution(_Matrix,sol_o,src_e,out);
|
||||
|
||||
// Verify the unprec residual
|
||||
if ( ! subGuess ) {
|
||||
_Matrix.M(out,resid);
|
||||
resid = resid-in;
|
||||
RealD ns = norm2(in);
|
||||
RealD nr = norm2(resid);
|
||||
|
||||
std::cout<<GridLogMessage << "SchurRedBlackBase solver true unprec resid "<< std::sqrt(nr/ns) << std::endl;
|
||||
} else {
|
||||
std::cout << GridLogMessage << "SchurRedBlackBase Guess subtracted after solve." << std::endl;
|
||||
}
|
||||
}
|
||||
|
||||
/////////////////////////////////////////////////////////////
|
||||
// Override in derived.
|
||||
/////////////////////////////////////////////////////////////
|
||||
virtual void RedBlackSource (Matrix & _Matrix,const Field &src, Field &src_e,Field &src_o) =0;
|
||||
virtual void RedBlackSolution(Matrix & _Matrix,const Field &sol_o, const Field &src_e,Field &sol) =0;
|
||||
virtual void RedBlackSolve (Matrix & _Matrix,const Field &src_o, Field &sol_o) =0;
|
||||
virtual void RedBlackSolve (Matrix & _Matrix,const std::vector<Field> &src_o, std::vector<Field> &sol_o)=0;
|
||||
|
||||
};
|
||||
|
||||
template<class Field> class SchurRedBlackStaggeredSolve : public SchurRedBlackBase<Field> {
|
||||
public:
|
||||
typedef CheckerBoardedSparseMatrixBase<Field> Matrix;
|
||||
|
||||
SchurRedBlackStaggeredSolve(OperatorFunction<Field> &HermitianRBSolver, const bool initSubGuess = false,
|
||||
const bool _solnAsInitGuess = false)
|
||||
: SchurRedBlackBase<Field> (HermitianRBSolver,initSubGuess,_solnAsInitGuess)
|
||||
{
|
||||
}
|
||||
|
||||
//////////////////////////////////////////////////////
|
||||
// Override RedBlack specialisation
|
||||
//////////////////////////////////////////////////////
|
||||
virtual void RedBlackSource(Matrix & _Matrix,const Field &src, Field &src_e,Field &src_o)
|
||||
{
|
||||
GridBase *grid = _Matrix.RedBlackGrid();
|
||||
GridBase *fgrid= _Matrix.Grid();
|
||||
|
||||
Field tmp(grid);
|
||||
Field Mtmp(grid);
|
||||
|
||||
pickCheckerboard(Even,src_e,src);
|
||||
pickCheckerboard(Odd ,src_o,src);
|
||||
|
||||
/////////////////////////////////////////////////////
|
||||
// src_o = (source_o - Moe MeeInv source_e)
|
||||
/////////////////////////////////////////////////////
|
||||
_Matrix.MooeeInv(src_e,tmp); assert( tmp.checkerboard ==Even);
|
||||
_Matrix.Meooe (tmp,Mtmp); assert( Mtmp.checkerboard ==Odd);
|
||||
tmp=src_o-Mtmp; assert( tmp.checkerboard ==Odd);
|
||||
|
||||
_Matrix.Mooee(tmp,src_o); // Extra factor of "m" in source from dumb choice of matrix norm.
|
||||
}
|
||||
virtual void RedBlackSolution(Matrix & _Matrix,const Field &sol_o, const Field &src_e_c,Field &sol)
|
||||
{
|
||||
GridBase *grid = _Matrix.RedBlackGrid();
|
||||
GridBase *fgrid= _Matrix.Grid();
|
||||
|
||||
Field tmp(grid);
|
||||
Field sol_e(grid);
|
||||
Field src_e(grid);
|
||||
|
||||
src_e = src_e_c; // Const correctness
|
||||
|
||||
///////////////////////////////////////////////////
|
||||
// sol_e = M_ee^-1 * ( src_e - Meo sol_o )...
|
||||
///////////////////////////////////////////////////
|
||||
_Matrix.Meooe(sol_o,tmp); assert( tmp.checkerboard ==Even);
|
||||
src_e = src_e-tmp; assert( src_e.checkerboard ==Even);
|
||||
_Matrix.MooeeInv(src_e,sol_e); assert( sol_e.checkerboard ==Even);
|
||||
|
||||
setCheckerboard(sol,sol_e); assert( sol_e.checkerboard ==Even);
|
||||
setCheckerboard(sol,sol_o); assert( sol_o.checkerboard ==Odd );
|
||||
}
|
||||
virtual void RedBlackSolve (Matrix & _Matrix,const Field &src_o, Field &sol_o)
|
||||
{
|
||||
SchurStaggeredOperator<Matrix,Field> _HermOpEO(_Matrix);
|
||||
this->_HermitianRBSolver(_HermOpEO,src_o,sol_o); assert(sol_o.checkerboard==Odd);
|
||||
};
|
||||
virtual void RedBlackSolve (Matrix & _Matrix,const std::vector<Field> &src_o, std::vector<Field> &sol_o)
|
||||
{
|
||||
SchurStaggeredOperator<Matrix,Field> _HermOpEO(_Matrix);
|
||||
this->_HermitianRBSolver(_HermOpEO,src_o,sol_o);
|
||||
}
|
||||
};
|
||||
template<class Field> using SchurRedBlackStagSolve = SchurRedBlackStaggeredSolve<Field>;
|
||||
|
||||
///////////////////////////////////////////////////////////////////////////////////////////////////////
|
||||
// Site diagonal has Mooee on it.
|
||||
///////////////////////////////////////////////////////////////////////////////////////////////////////
|
||||
template<class Field> class SchurRedBlackDiagMooeeSolve : public SchurRedBlackBase<Field> {
|
||||
public:
|
||||
typedef CheckerBoardedSparseMatrixBase<Field> Matrix;
|
||||
|
||||
SchurRedBlackDiagMooeeSolve(OperatorFunction<Field> &HermitianRBSolver, const bool initSubGuess = false,
|
||||
const bool _solnAsInitGuess = false)
|
||||
: SchurRedBlackBase<Field> (HermitianRBSolver,initSubGuess,_solnAsInitGuess) {};
|
||||
|
||||
|
||||
//////////////////////////////////////////////////////
|
||||
// Override RedBlack specialisation
|
||||
//////////////////////////////////////////////////////
|
||||
virtual void RedBlackSource(Matrix & _Matrix,const Field &src, Field &src_e,Field &src_o)
|
||||
{
|
||||
GridBase *grid = _Matrix.RedBlackGrid();
|
||||
GridBase *fgrid= _Matrix.Grid();
|
||||
|
||||
Field tmp(grid);
|
||||
Field Mtmp(grid);
|
||||
|
||||
pickCheckerboard(Even,src_e,src);
|
||||
pickCheckerboard(Odd ,src_o,src);
|
||||
|
||||
/////////////////////////////////////////////////////
|
||||
// src_o = Mdag * (source_o - Moe MeeInv source_e)
|
||||
/////////////////////////////////////////////////////
|
||||
_Matrix.MooeeInv(src_e,tmp); assert( tmp.checkerboard ==Even);
|
||||
_Matrix.Meooe (tmp,Mtmp); assert( Mtmp.checkerboard ==Odd);
|
||||
tmp=src_o-Mtmp; assert( tmp.checkerboard ==Odd);
|
||||
|
||||
// get the right MpcDag
|
||||
SchurDiagMooeeOperator<Matrix,Field> _HermOpEO(_Matrix);
|
||||
_HermOpEO.MpcDag(tmp,src_o); assert(src_o.checkerboard ==Odd);
|
||||
|
||||
}
|
||||
virtual void RedBlackSolution(Matrix & _Matrix,const Field &sol_o, const Field &src_e,Field &sol)
|
||||
{
|
||||
GridBase *grid = _Matrix.RedBlackGrid();
|
||||
GridBase *fgrid= _Matrix.Grid();
|
||||
|
||||
Field tmp(grid);
|
||||
Field sol_e(grid);
|
||||
Field src_e_i(grid);
|
||||
///////////////////////////////////////////////////
|
||||
// sol_e = M_ee^-1 * ( src_e - Meo sol_o )...
|
||||
///////////////////////////////////////////////////
|
||||
_Matrix.Meooe(sol_o,tmp); assert( tmp.checkerboard ==Even);
|
||||
src_e_i = src_e-tmp; assert( src_e_i.checkerboard ==Even);
|
||||
_Matrix.MooeeInv(src_e_i,sol_e); assert( sol_e.checkerboard ==Even);
|
||||
|
||||
setCheckerboard(sol,sol_e); assert( sol_e.checkerboard ==Even);
|
||||
setCheckerboard(sol,sol_o); assert( sol_o.checkerboard ==Odd );
|
||||
}
|
||||
virtual void RedBlackSolve (Matrix & _Matrix,const Field &src_o, Field &sol_o)
|
||||
{
|
||||
SchurDiagMooeeOperator<Matrix,Field> _HermOpEO(_Matrix);
|
||||
this->_HermitianRBSolver(_HermOpEO,src_o,sol_o); assert(sol_o.checkerboard==Odd);
|
||||
};
|
||||
virtual void RedBlackSolve (Matrix & _Matrix,const std::vector<Field> &src_o, std::vector<Field> &sol_o)
|
||||
{
|
||||
SchurDiagMooeeOperator<Matrix,Field> _HermOpEO(_Matrix);
|
||||
this->_HermitianRBSolver(_HermOpEO,src_o,sol_o);
|
||||
}
|
||||
};
|
||||
|
||||
///////////////////////////////////////////////////////////////////////////////////////////////////////
|
||||
// Site diagonal is identity, right preconditioned by Mee^inv
|
||||
// ( 1 - Meo Moo^inv Moe Mee^inv ) phi =( 1 - Meo Moo^inv Moe Mee^inv ) Mee psi = = eta = eta
|
||||
//=> psi = MeeInv phi
|
||||
///////////////////////////////////////////////////////////////////////////////////////////////////////
|
||||
template<class Field> class SchurRedBlackDiagTwoSolve : public SchurRedBlackBase<Field> {
|
||||
public:
|
||||
typedef CheckerBoardedSparseMatrixBase<Field> Matrix;
|
||||
|
||||
/////////////////////////////////////////////////////
|
||||
// Wrap the usual normal equations Schur trick
|
||||
/////////////////////////////////////////////////////
|
||||
SchurRedBlackDiagTwoSolve(OperatorFunction<Field> &HermitianRBSolver, const bool initSubGuess = false,
|
||||
const bool _solnAsInitGuess = false)
|
||||
: SchurRedBlackBase<Field>(HermitianRBSolver,initSubGuess,_solnAsInitGuess) {};
|
||||
|
||||
virtual void RedBlackSource(Matrix & _Matrix,const Field &src, Field &src_e,Field &src_o)
|
||||
{
|
||||
GridBase *grid = _Matrix.RedBlackGrid();
|
||||
GridBase *fgrid= _Matrix.Grid();
|
||||
|
||||
SchurDiagTwoOperator<Matrix,Field> _HermOpEO(_Matrix);
|
||||
|
||||
Field tmp(grid);
|
||||
Field Mtmp(grid);
|
||||
|
||||
pickCheckerboard(Even,src_e,src);
|
||||
pickCheckerboard(Odd ,src_o,src);
|
||||
|
||||
/////////////////////////////////////////////////////
|
||||
// src_o = Mdag * (source_o - Moe MeeInv source_e)
|
||||
/////////////////////////////////////////////////////
|
||||
_Matrix.MooeeInv(src_e,tmp); assert( tmp.checkerboard ==Even);
|
||||
_Matrix.Meooe (tmp,Mtmp); assert( Mtmp.checkerboard ==Odd);
|
||||
tmp=src_o-Mtmp; assert( tmp.checkerboard ==Odd);
|
||||
|
||||
// get the right MpcDag
|
||||
_HermOpEO.MpcDag(tmp,src_o); assert(src_o.checkerboard ==Odd);
|
||||
}
|
||||
|
||||
virtual void RedBlackSolution(Matrix & _Matrix,const Field &sol_o, const Field &src_e,Field &sol)
|
||||
{
|
||||
GridBase *grid = _Matrix.RedBlackGrid();
|
||||
GridBase *fgrid= _Matrix.Grid();
|
||||
|
||||
Field sol_o_i(grid);
|
||||
Field tmp(grid);
|
||||
Field sol_e(grid);
|
||||
|
||||
////////////////////////////////////////////////
|
||||
// MooeeInv due to pecond
|
||||
////////////////////////////////////////////////
|
||||
_Matrix.MooeeInv(sol_o,tmp);
|
||||
sol_o_i = tmp;
|
||||
|
||||
///////////////////////////////////////////////////
|
||||
// sol_e = M_ee^-1 * ( src_e - Meo sol_o )...
|
||||
///////////////////////////////////////////////////
|
||||
_Matrix.Meooe(sol_o_i,tmp); assert( tmp.checkerboard ==Even);
|
||||
tmp = src_e-tmp; assert( src_e.checkerboard ==Even);
|
||||
_Matrix.MooeeInv(tmp,sol_e); assert( sol_e.checkerboard ==Even);
|
||||
|
||||
setCheckerboard(sol,sol_e); assert( sol_e.checkerboard ==Even);
|
||||
setCheckerboard(sol,sol_o_i); assert( sol_o_i.checkerboard ==Odd );
|
||||
};
|
||||
|
||||
virtual void RedBlackSolve (Matrix & _Matrix,const Field &src_o, Field &sol_o)
|
||||
{
|
||||
SchurDiagTwoOperator<Matrix,Field> _HermOpEO(_Matrix);
|
||||
this->_HermitianRBSolver(_HermOpEO,src_o,sol_o);
|
||||
};
|
||||
virtual void RedBlackSolve (Matrix & _Matrix,const std::vector<Field> &src_o, std::vector<Field> &sol_o)
|
||||
{
|
||||
SchurDiagTwoOperator<Matrix,Field> _HermOpEO(_Matrix);
|
||||
this->_HermitianRBSolver(_HermOpEO,src_o,sol_o);
|
||||
}
|
||||
};
|
||||
}
|
||||
#endif
|
@ -50,15 +50,15 @@ void CartesianCommunicator::Init(int *argc, char ***argv)
|
||||
assert(0);
|
||||
}
|
||||
|
||||
Grid_quiesce_nodes();
|
||||
|
||||
// Never clean up as done once.
|
||||
MPI_Comm_dup (MPI_COMM_WORLD,&communicator_world);
|
||||
|
||||
Grid_quiesce_nodes();
|
||||
GlobalSharedMemory::Init(communicator_world);
|
||||
GlobalSharedMemory::SharedMemoryAllocate(
|
||||
GlobalSharedMemory::MAX_MPI_SHM_BYTES,
|
||||
GlobalSharedMemory::Hugepages);
|
||||
Grid_unquiesce_nodes();
|
||||
}
|
||||
|
||||
///////////////////////////////////////////////////////////////////////////
|
||||
@ -107,8 +107,7 @@ CartesianCommunicator::CartesianCommunicator(const std::vector<int> &processors)
|
||||
//////////////////////////////////
|
||||
CartesianCommunicator::CartesianCommunicator(const std::vector<int> &processors,const CartesianCommunicator &parent,int &srank)
|
||||
{
|
||||
_ndimension = processors.size();
|
||||
|
||||
_ndimension = processors.size(); assert(_ndimension>=1);
|
||||
int parent_ndimension = parent._ndimension; assert(_ndimension >= parent._ndimension);
|
||||
std::vector<int> parent_processor_coor(_ndimension,0);
|
||||
std::vector<int> parent_processors (_ndimension,1);
|
||||
@ -124,10 +123,8 @@ CartesianCommunicator::CartesianCommunicator(const std::vector<int> &processors,
|
||||
// split the communicator
|
||||
//////////////////////////////////////////////////////////////////////////////////////////////////////
|
||||
// int Nparent = parent._processors ;
|
||||
// std::cout << " splitting from communicator "<<parent.communicator <<std::endl;
|
||||
int Nparent;
|
||||
MPI_Comm_size(parent.communicator,&Nparent);
|
||||
// std::cout << " Parent size "<<Nparent <<std::endl;
|
||||
|
||||
int childsize=1;
|
||||
for(int d=0;d<processors.size();d++) {
|
||||
@ -136,8 +133,6 @@ CartesianCommunicator::CartesianCommunicator(const std::vector<int> &processors,
|
||||
int Nchild = Nparent/childsize;
|
||||
assert (childsize * Nchild == Nparent);
|
||||
|
||||
// std::cout << " child size "<<childsize <<std::endl;
|
||||
|
||||
std::vector<int> ccoor(_ndimension); // coor within subcommunicator
|
||||
std::vector<int> scoor(_ndimension); // coor of split within parent
|
||||
std::vector<int> ssize(_ndimension); // coor of split within parent
|
@ -52,7 +52,7 @@ CartesianCommunicator::CartesianCommunicator(const std::vector<int> &processors,
|
||||
CartesianCommunicator::CartesianCommunicator(const std::vector<int> &processors)
|
||||
{
|
||||
_processors = processors;
|
||||
_ndimension = processors.size();
|
||||
_ndimension = processors.size(); assert(_ndimension>=1);
|
||||
_processor_coor.resize(_ndimension);
|
||||
|
||||
// Require 1^N processor grid for fake
|
@ -103,6 +103,8 @@ class GlobalSharedMemory {
|
||||
//////////////////////////////////////////////////////////////////////////////////////
|
||||
static void Init(Grid_MPI_Comm comm); // Typically MPI_COMM_WORLD
|
||||
static void OptimalCommunicator(const std::vector<int> &processors,Grid_MPI_Comm & optimal_comm); // Turns MPI_COMM_WORLD into right layout for Cartesian
|
||||
static void OptimalCommunicatorHypercube(const std::vector<int> &processors,Grid_MPI_Comm & optimal_comm); // Turns MPI_COMM_WORLD into right layout for Cartesian
|
||||
static void OptimalCommunicatorSharedMemory(const std::vector<int> &processors,Grid_MPI_Comm & optimal_comm); // Turns MPI_COMM_WORLD into right layout for Cartesian
|
||||
///////////////////////////////////////////////////
|
||||
// Provide shared memory facilities off comm world
|
||||
///////////////////////////////////////////////////
|
@ -132,8 +132,22 @@ int Log2Size(int TwoToPower,int MAXLOG2)
|
||||
}
|
||||
void GlobalSharedMemory::OptimalCommunicator(const std::vector<int> &processors,Grid_MPI_Comm & optimal_comm)
|
||||
{
|
||||
#undef HYPERCUBE
|
||||
#ifdef HYPERCUBE
|
||||
//////////////////////////////////////////////////////////////////////////////
|
||||
// Look and see if it looks like an HPE 8600 based on hostname conventions
|
||||
//////////////////////////////////////////////////////////////////////////////
|
||||
const int namelen = _POSIX_HOST_NAME_MAX;
|
||||
char name[namelen];
|
||||
int R;
|
||||
int I;
|
||||
int N;
|
||||
gethostname(name,namelen);
|
||||
int nscan = sscanf(name,"r%di%dn%d",&R,&I,&N) ;
|
||||
|
||||
if(nscan==3) OptimalCommunicatorHypercube(processors,optimal_comm);
|
||||
else OptimalCommunicatorSharedMemory(processors,optimal_comm);
|
||||
}
|
||||
void GlobalSharedMemory::OptimalCommunicatorHypercube(const std::vector<int> &processors,Grid_MPI_Comm & optimal_comm)
|
||||
{
|
||||
////////////////////////////////////////////////////////////////
|
||||
// Assert power of two shm_size.
|
||||
////////////////////////////////////////////////////////////////
|
||||
@ -175,7 +189,7 @@ void GlobalSharedMemory::OptimalCommunicator(const std::vector<int> &processors,
|
||||
|
||||
std::string hname(name);
|
||||
std::cout << "hostname "<<hname<<std::endl;
|
||||
std::cout << "R " << R << " I " << I << " N "<< N<<
|
||||
std::cout << "R " << R << " I " << I << " N "<< N
|
||||
<< " hypercoor 0x"<<std::hex<<hypercoor<<std::dec<<std::endl;
|
||||
|
||||
//////////////////////////////////////////////////////////////////
|
||||
@ -254,7 +268,9 @@ void GlobalSharedMemory::OptimalCommunicator(const std::vector<int> &processors,
|
||||
/////////////////////////////////////////////////////////////////
|
||||
int ierr= MPI_Comm_split(WorldComm,0,rank,&optimal_comm);
|
||||
assert(ierr==0);
|
||||
#else
|
||||
}
|
||||
void GlobalSharedMemory::OptimalCommunicatorSharedMemory(const std::vector<int> &processors,Grid_MPI_Comm & optimal_comm)
|
||||
{
|
||||
////////////////////////////////////////////////////////////////
|
||||
// Assert power of two shm_size.
|
||||
////////////////////////////////////////////////////////////////
|
||||
@ -307,7 +323,6 @@ void GlobalSharedMemory::OptimalCommunicator(const std::vector<int> &processors,
|
||||
/////////////////////////////////////////////////////////////////
|
||||
int ierr= MPI_Comm_split(WorldComm,0,rank,&optimal_comm);
|
||||
assert(ierr==0);
|
||||
#endif
|
||||
}
|
||||
////////////////////////////////////////////////////////////////////////////////////////////
|
||||
// SHMGET
|
||||
@ -338,7 +353,7 @@ void GlobalSharedMemory::SharedMemoryAllocate(uint64_t bytes, int flags)
|
||||
int errsv = errno;
|
||||
printf("Errno %d\n",errsv);
|
||||
printf("key %d\n",key);
|
||||
printf("size %lld\n",size);
|
||||
printf("size %ld\n",size);
|
||||
printf("flags %d\n",flags);
|
||||
perror("shmget");
|
||||
exit(1);
|
||||
@ -414,7 +429,7 @@ void GlobalSharedMemory::SharedMemoryAllocate(uint64_t bytes, int flags)
|
||||
assert(((uint64_t)ptr&0x3F)==0);
|
||||
close(fd);
|
||||
WorldShmCommBufs[r] =ptr;
|
||||
std::cout << "Set WorldShmCommBufs["<<r<<"]="<<ptr<< "("<< bytes<< "bytes)"<<std::endl;
|
||||
// std::cout << "Set WorldShmCommBufs["<<r<<"]="<<ptr<< "("<< bytes<< "bytes)"<<std::endl;
|
||||
}
|
||||
_ShmAlloc=1;
|
||||
_ShmAllocBytes = bytes;
|
||||
@ -456,7 +471,7 @@ void GlobalSharedMemory::SharedMemoryAllocate(uint64_t bytes, int flags)
|
||||
assert(((uint64_t)ptr&0x3F)==0);
|
||||
close(fd);
|
||||
WorldShmCommBufs[r] =ptr;
|
||||
std::cout << "Set WorldShmCommBufs["<<r<<"]="<<ptr<< "("<< bytes<< "bytes)"<<std::endl;
|
||||
// std::cout << "Set WorldShmCommBufs["<<r<<"]="<<ptr<< "("<< bytes<< "bytes)"<<std::endl;
|
||||
}
|
||||
_ShmAlloc=1;
|
||||
_ShmAllocBytes = bytes;
|
||||
@ -500,7 +515,7 @@ void GlobalSharedMemory::SharedMemoryAllocate(uint64_t bytes, int flags)
|
||||
#endif
|
||||
void * ptr = mmap(NULL,size, PROT_READ | PROT_WRITE, mmap_flag, fd, 0);
|
||||
|
||||
std::cout << "Set WorldShmCommBufs["<<r<<"]="<<ptr<< "("<< size<< "bytes)"<<std::endl;
|
||||
// std::cout << "Set WorldShmCommBufs["<<r<<"]="<<ptr<< "("<< size<< "bytes)"<<std::endl;
|
||||
if ( ptr == (void * )MAP_FAILED ) {
|
||||
perror("failed mmap");
|
||||
assert(0);
|
File diff suppressed because it is too large
Load Diff
@ -85,7 +85,7 @@ class LatticeTrinaryExpression :public std::pair<Op,std::tuple<T1,T2,T3> >, publ
|
||||
|
||||
void inline conformable(GridBase *lhs,GridBase *rhs)
|
||||
{
|
||||
assert(lhs == rhs);
|
||||
assert((lhs == rhs) && " conformable check pointers mismatch ");
|
||||
}
|
||||
|
||||
template<class vobj>
|
@ -39,7 +39,7 @@ template<class vobj> inline RealD norm2(const Lattice<vobj> &arg){
|
||||
|
||||
// Double inner product
|
||||
template<class vobj>
|
||||
inline ComplexD innerProduct(const Lattice<vobj> &left,const Lattice<vobj> &right)
|
||||
inline ComplexD innerProduct(const Lattice<vobj> &left,const Lattice<vobj> &right)
|
||||
{
|
||||
typedef typename vobj::scalar_type scalar_type;
|
||||
typedef typename vobj::vector_typeD vector_type;
|
||||
@ -274,6 +274,115 @@ template<class vobj> inline void sliceSum(const Lattice<vobj> &Data,std::vector<
|
||||
}
|
||||
}
|
||||
|
||||
template<class vobj>
|
||||
static void mySliceInnerProductVector( std::vector<ComplexD> & result, const Lattice<vobj> &lhs,const Lattice<vobj> &rhs,int orthogdim)
|
||||
{
|
||||
// std::cout << GridLogMessage << "Start mySliceInnerProductVector" << std::endl;
|
||||
|
||||
typedef typename vobj::scalar_type scalar_type;
|
||||
std::vector<scalar_type> lsSum;
|
||||
localSliceInnerProductVector(result, lhs, rhs, lsSum, orthogdim);
|
||||
globalSliceInnerProductVector(result, lhs, lsSum, orthogdim);
|
||||
// std::cout << GridLogMessage << "End mySliceInnerProductVector" << std::endl;
|
||||
}
|
||||
|
||||
template <class vobj>
|
||||
static void localSliceInnerProductVector(std::vector<ComplexD> &result, const Lattice<vobj> &lhs, const Lattice<vobj> &rhs, std::vector<typename vobj::scalar_type> &lsSum, int orthogdim)
|
||||
{
|
||||
// std::cout << GridLogMessage << "Start prep" << std::endl;
|
||||
typedef typename vobj::vector_type vector_type;
|
||||
typedef typename vobj::scalar_type scalar_type;
|
||||
GridBase *grid = lhs._grid;
|
||||
assert(grid!=NULL);
|
||||
conformable(grid,rhs._grid);
|
||||
|
||||
const int Nd = grid->_ndimension;
|
||||
const int Nsimd = grid->Nsimd();
|
||||
|
||||
assert(orthogdim >= 0);
|
||||
assert(orthogdim < Nd);
|
||||
|
||||
int fd=grid->_fdimensions[orthogdim];
|
||||
int ld=grid->_ldimensions[orthogdim];
|
||||
int rd=grid->_rdimensions[orthogdim];
|
||||
// std::cout << GridLogMessage << "Start alloc" << std::endl;
|
||||
|
||||
std::vector<vector_type,alignedAllocator<vector_type> > lvSum(rd); // will locally sum vectors first
|
||||
lsSum.resize(ld,scalar_type(0.0)); // sum across these down to scalars
|
||||
std::vector<iScalar<scalar_type>> extracted(Nsimd); // splitting the SIMD
|
||||
// std::cout << GridLogMessage << "End alloc" << std::endl;
|
||||
|
||||
result.resize(fd); // And then global sum to return the same vector to every node for IO to file
|
||||
for(int r=0;r<rd;r++){
|
||||
lvSum[r]=zero;
|
||||
}
|
||||
|
||||
int e1= grid->_slice_nblock[orthogdim];
|
||||
int e2= grid->_slice_block [orthogdim];
|
||||
int stride=grid->_slice_stride[orthogdim];
|
||||
// std::cout << GridLogMessage << "End prep" << std::endl;
|
||||
// std::cout << GridLogMessage << "Start parallel inner product, _rd = " << rd << std::endl;
|
||||
vector_type vv;
|
||||
parallel_for(int r=0;r<rd;r++)
|
||||
{
|
||||
|
||||
int so=r*grid->_ostride[orthogdim]; // base offset for start of plane
|
||||
|
||||
for(int n=0;n<e1;n++){
|
||||
for(int b=0;b<e2;b++){
|
||||
int ss = so + n * stride + b;
|
||||
vv = TensorRemove(innerProduct(lhs._odata[ss], rhs._odata[ss]));
|
||||
lvSum[r] = lvSum[r] + vv;
|
||||
}
|
||||
}
|
||||
}
|
||||
// std::cout << GridLogMessage << "End parallel inner product" << std::endl;
|
||||
|
||||
// Sum across simd lanes in the plane, breaking out orthog dir.
|
||||
std::vector<int> icoor(Nd);
|
||||
for(int rt=0;rt<rd;rt++){
|
||||
|
||||
iScalar<vector_type> temp;
|
||||
temp._internal = lvSum[rt];
|
||||
extract(temp,extracted);
|
||||
|
||||
for(int idx=0;idx<Nsimd;idx++){
|
||||
|
||||
grid->iCoorFromIindex(icoor,idx);
|
||||
|
||||
int ldx =rt+icoor[orthogdim]*rd;
|
||||
|
||||
lsSum[ldx]=lsSum[ldx]+extracted[idx]._internal;
|
||||
|
||||
}
|
||||
}
|
||||
// std::cout << GridLogMessage << "End sum over simd lanes" << std::endl;
|
||||
}
|
||||
template <class vobj>
|
||||
static void globalSliceInnerProductVector(std::vector<ComplexD> &result, const Lattice<vobj> &lhs, std::vector<typename vobj::scalar_type> &lsSum, int orthogdim)
|
||||
{
|
||||
typedef typename vobj::scalar_type scalar_type;
|
||||
GridBase *grid = lhs._grid;
|
||||
int fd = result.size();
|
||||
int ld = lsSum.size();
|
||||
// sum over nodes.
|
||||
std::vector<scalar_type> gsum;
|
||||
gsum.resize(fd, scalar_type(0.0));
|
||||
// std::cout << GridLogMessage << "Start of gsum[t] creation:" << std::endl;
|
||||
for(int t=0;t<fd;t++){
|
||||
int pt = t/ld; // processor plane
|
||||
int lt = t%ld;
|
||||
if ( pt == grid->_processor_coor[orthogdim] ) {
|
||||
gsum[t]=lsSum[lt];
|
||||
}
|
||||
}
|
||||
// std::cout << GridLogMessage << "End of gsum[t] creation:" << std::endl;
|
||||
// std::cout << GridLogMessage << "Start of GlobalSumVector:" << std::endl;
|
||||
grid->GlobalSumVector(&gsum[0], fd);
|
||||
// std::cout << GridLogMessage << "End of GlobalSumVector:" << std::endl;
|
||||
|
||||
result = gsum;
|
||||
}
|
||||
template<class vobj>
|
||||
static void sliceInnerProductVector( std::vector<ComplexD> & result, const Lattice<vobj> &lhs,const Lattice<vobj> &rhs,int orthogdim)
|
||||
{
|
@ -251,7 +251,7 @@ namespace Grid {
|
||||
|
||||
dist[0].reset();
|
||||
for(int idx=0;idx<words;idx++){
|
||||
fillScalar(buf[idx],dist[0],_generators[0]);
|
||||
fillScalar(buf[idx],dist[0],_generators[0]);
|
||||
}
|
||||
|
||||
CartesianCommunicator::BroadcastWorld(0,(void *)&l,sizeof(l));
|
||||
@ -283,7 +283,7 @@ namespace Grid {
|
||||
RealF *pointer=(RealF *)&l;
|
||||
dist[0].reset();
|
||||
for(int i=0;i<2*vComplexF::Nsimd();i++){
|
||||
fillScalar(pointer[i],dist[0],_generators[0]);
|
||||
fillScalar(pointer[i],dist[0],_generators[0]);
|
||||
}
|
||||
CartesianCommunicator::BroadcastWorld(0,(void *)&l,sizeof(l));
|
||||
}
|
||||
@ -291,7 +291,7 @@ namespace Grid {
|
||||
RealD *pointer=(RealD *)&l;
|
||||
dist[0].reset();
|
||||
for(int i=0;i<2*vComplexD::Nsimd();i++){
|
||||
fillScalar(pointer[i],dist[0],_generators[0]);
|
||||
fillScalar(pointer[i],dist[0],_generators[0]);
|
||||
}
|
||||
CartesianCommunicator::BroadcastWorld(0,(void *)&l,sizeof(l));
|
||||
}
|
||||
@ -299,7 +299,7 @@ namespace Grid {
|
||||
RealF *pointer=(RealF *)&l;
|
||||
dist[0].reset();
|
||||
for(int i=0;i<vRealF::Nsimd();i++){
|
||||
fillScalar(pointer[i],dist[0],_generators[0]);
|
||||
fillScalar(pointer[i],dist[0],_generators[0]);
|
||||
}
|
||||
CartesianCommunicator::BroadcastWorld(0,(void *)&l,sizeof(l));
|
||||
}
|
||||
@ -317,6 +317,19 @@ namespace Grid {
|
||||
std::seed_seq src(seeds.begin(),seeds.end());
|
||||
Seed(src,0);
|
||||
}
|
||||
|
||||
void SeedUniqueString(const std::string &s){
|
||||
std::vector<int> seeds;
|
||||
std::stringstream sha;
|
||||
seeds = GridChecksum::sha256_seeds(s);
|
||||
for(int i=0;i<seeds.size();i++) {
|
||||
sha << std::hex << seeds[i];
|
||||
}
|
||||
std::cout << GridLogMessage << "Intialising serial RNG with unique string '"
|
||||
<< s << "'" << std::endl;
|
||||
std::cout << GridLogMessage << "Seed SHA256: " << sha.str() << std::endl;
|
||||
SeedFixedIntegers(seeds);
|
||||
}
|
||||
};
|
||||
|
||||
class GridParallelRNG : public GridRNGbase {
|
||||
@ -377,6 +390,14 @@ namespace Grid {
|
||||
_time_counter += usecond()- inner_time_counter;
|
||||
};
|
||||
|
||||
void SeedUniqueString(const std::string &s){
|
||||
std::vector<int> seeds;
|
||||
seeds = GridChecksum::sha256_seeds(s);
|
||||
std::cout << GridLogMessage << "Intialising parallel RNG with unique string '"
|
||||
<< s << "'" << std::endl;
|
||||
std::cout << GridLogMessage << "Seed SHA256: " << GridChecksum::sha256_string(seeds) << std::endl;
|
||||
SeedFixedIntegers(seeds);
|
||||
}
|
||||
void SeedFixedIntegers(const std::vector<int> &seeds){
|
||||
|
||||
// Everyone generates the same seed_seq based on input seeds
|
@ -464,8 +464,10 @@ void InsertSliceLocal(const Lattice<vobj> &lowDim, Lattice<vobj> & higherDim,int
|
||||
assert(orthog>=0);
|
||||
|
||||
for(int d=0;d<nh;d++){
|
||||
assert(lg->_processors[d] == hg->_processors[d]);
|
||||
assert(lg->_ldimensions[d] == hg->_ldimensions[d]);
|
||||
if ( d!=orthog ) {
|
||||
assert(lg->_processors[d] == hg->_processors[d]);
|
||||
assert(lg->_ldimensions[d] == hg->_ldimensions[d]);
|
||||
}
|
||||
}
|
||||
|
||||
// the above should guarantee that the operations are local
|
||||
@ -485,7 +487,7 @@ void InsertSliceLocal(const Lattice<vobj> &lowDim, Lattice<vobj> & higherDim,int
|
||||
|
||||
|
||||
template<class vobj>
|
||||
void ExtractSliceLocal(Lattice<vobj> &lowDim, Lattice<vobj> & higherDim,int slice_lo,int slice_hi, int orthog)
|
||||
void ExtractSliceLocal(Lattice<vobj> &lowDim,const Lattice<vobj> & higherDim,int slice_lo,int slice_hi, int orthog)
|
||||
{
|
||||
typedef typename vobj::scalar_object sobj;
|
||||
|
||||
@ -499,8 +501,10 @@ void ExtractSliceLocal(Lattice<vobj> &lowDim, Lattice<vobj> & higherDim,int slic
|
||||
assert(orthog>=0);
|
||||
|
||||
for(int d=0;d<nh;d++){
|
||||
assert(lg->_processors[d] == hg->_processors[d]);
|
||||
assert(lg->_ldimensions[d] == hg->_ldimensions[d]);
|
||||
if ( d!=orthog ) {
|
||||
assert(lg->_processors[d] == hg->_processors[d]);
|
||||
assert(lg->_ldimensions[d] == hg->_ldimensions[d]);
|
||||
}
|
||||
}
|
||||
|
||||
// the above should guarantee that the operations are local
|
@ -59,6 +59,7 @@ void GridLogTimestamp(int on){
|
||||
}
|
||||
|
||||
Colours GridLogColours(0);
|
||||
GridLogger GridLogMG (1, "MG" , GridLogColours, "NORMAL");
|
||||
GridLogger GridLogIRL (1, "IRL" , GridLogColours, "NORMAL");
|
||||
GridLogger GridLogSolver (1, "Solver", GridLogColours, "NORMAL");
|
||||
GridLogger GridLogError (1, "Error" , GridLogColours, "RED");
|
||||
@ -76,19 +77,18 @@ void GridLogConfigure(std::vector<std::string> &logstreams) {
|
||||
GridLogIterative.Active(0);
|
||||
GridLogDebug.Active(0);
|
||||
GridLogPerformance.Active(0);
|
||||
GridLogIntegrator.Active(0);
|
||||
GridLogIntegrator.Active(1);
|
||||
GridLogColours.Active(0);
|
||||
|
||||
for (int i = 0; i < logstreams.size(); i++) {
|
||||
if (logstreams[i] == std::string("Error")) GridLogError.Active(1);
|
||||
if (logstreams[i] == std::string("Warning")) GridLogWarning.Active(1);
|
||||
if (logstreams[i] == std::string("NoMessage")) GridLogMessage.Active(0);
|
||||
if (logstreams[i] == std::string("Iterative")) GridLogIterative.Active(1);
|
||||
if (logstreams[i] == std::string("Debug")) GridLogDebug.Active(1);
|
||||
if (logstreams[i] == std::string("Performance"))
|
||||
GridLogPerformance.Active(1);
|
||||
if (logstreams[i] == std::string("Integrator")) GridLogIntegrator.Active(1);
|
||||
if (logstreams[i] == std::string("Colours")) GridLogColours.Active(1);
|
||||
if (logstreams[i] == std::string("Error")) GridLogError.Active(1);
|
||||
if (logstreams[i] == std::string("Warning")) GridLogWarning.Active(1);
|
||||
if (logstreams[i] == std::string("NoMessage")) GridLogMessage.Active(0);
|
||||
if (logstreams[i] == std::string("Iterative")) GridLogIterative.Active(1);
|
||||
if (logstreams[i] == std::string("Debug")) GridLogDebug.Active(1);
|
||||
if (logstreams[i] == std::string("Performance")) GridLogPerformance.Active(1);
|
||||
if (logstreams[i] == std::string("Integrator")) GridLogIntegrator.Active(1);
|
||||
if (logstreams[i] == std::string("Colours")) GridLogColours.Active(1);
|
||||
}
|
||||
}
|
||||
|
@ -86,7 +86,7 @@ protected:
|
||||
Colours &Painter;
|
||||
int active;
|
||||
int timing_mode;
|
||||
int topWidth{-1};
|
||||
int topWidth{-1}, chanWidth{-1};
|
||||
static int timestamp;
|
||||
std::string name, topName;
|
||||
std::string COLOUR;
|
||||
@ -126,6 +126,7 @@ public:
|
||||
}
|
||||
}
|
||||
void setTopWidth(const int w) {topWidth = w;}
|
||||
void setChanWidth(const int w) {chanWidth = w;}
|
||||
|
||||
friend std::ostream& operator<< (std::ostream& stream, Logger& log){
|
||||
|
||||
@ -136,13 +137,20 @@ public:
|
||||
stream << std::setw(log.topWidth);
|
||||
}
|
||||
stream << log.topName << log.background()<< " : ";
|
||||
stream << log.colour() << std::left << log.name << log.background() << " : ";
|
||||
stream << log.colour() << std::left;
|
||||
if (log.chanWidth > 0)
|
||||
{
|
||||
stream << std::setw(log.chanWidth);
|
||||
}
|
||||
stream << log.name << log.background() << " : ";
|
||||
if ( log.timestamp ) {
|
||||
log.StopWatch->Stop();
|
||||
GridTime now = log.StopWatch->Elapsed();
|
||||
|
||||
if ( log.timing_mode==1 ) log.StopWatch->Reset();
|
||||
log.StopWatch->Start();
|
||||
stream << log.evidence()<< std::setw(6)<<now << log.background() << " : " ;
|
||||
stream << log.evidence()
|
||||
<< now << log.background() << " : " ;
|
||||
}
|
||||
stream << log.colour();
|
||||
return stream;
|
||||
@ -161,6 +169,7 @@ public:
|
||||
|
||||
void GridLogConfigure(std::vector<std::string> &logstreams);
|
||||
|
||||
extern GridLogger GridLogMG;
|
||||
extern GridLogger GridLogIRL;
|
||||
extern GridLogger GridLogSolver;
|
||||
extern GridLogger GridLogError;
|
3
Grid/parallelIO/BinaryIO.cc
Normal file
3
Grid/parallelIO/BinaryIO.cc
Normal file
@ -0,0 +1,3 @@
|
||||
#include <Grid/GridCore.h>
|
||||
|
||||
int Grid::BinaryIO::latticeWriteMaxRetry = -1;
|
@ -81,6 +81,7 @@ inline void removeWhitespace(std::string &key)
|
||||
///////////////////////////////////////////////////////////////////////////////////////////////////
|
||||
class BinaryIO {
|
||||
public:
|
||||
static int latticeWriteMaxRetry;
|
||||
|
||||
/////////////////////////////////////////////////////////////////////////////
|
||||
// more byte manipulation helpers
|
||||
@ -209,10 +210,10 @@ PARALLEL_CRITICAL
|
||||
static inline void le32toh_v(void *file_object,uint64_t bytes)
|
||||
{
|
||||
uint32_t *fp = (uint32_t *)file_object;
|
||||
uint32_t f;
|
||||
|
||||
uint64_t count = bytes/sizeof(uint32_t);
|
||||
parallel_for(uint64_t i=0;i<count;i++){
|
||||
uint32_t f;
|
||||
f = fp[i];
|
||||
// got network order and the network to host
|
||||
f = ((f&0xFF)<<24) | ((f&0xFF00)<<8) | ((f&0xFF0000)>>8) | ((f&0xFF000000UL)>>24) ;
|
||||
@ -234,10 +235,9 @@ PARALLEL_CRITICAL
|
||||
static inline void le64toh_v(void *file_object,uint64_t bytes)
|
||||
{
|
||||
uint64_t *fp = (uint64_t *)file_object;
|
||||
uint64_t f,g;
|
||||
|
||||
uint64_t count = bytes/sizeof(uint64_t);
|
||||
parallel_for(uint64_t i=0;i<count;i++){
|
||||
uint64_t f,g;
|
||||
f = fp[i];
|
||||
// got network order and the network to host
|
||||
g = ((f&0xFF)<<24) | ((f&0xFF00)<<8) | ((f&0xFF0000)>>8) | ((f&0xFF000000UL)>>24) ;
|
||||
@ -348,7 +348,8 @@ PARALLEL_CRITICAL
|
||||
int ieee32 = (format == std::string("IEEE32"));
|
||||
int ieee64big = (format == std::string("IEEE64BIG"));
|
||||
int ieee64 = (format == std::string("IEEE64"));
|
||||
|
||||
assert(ieee64||ieee32|ieee64big||ieee32big);
|
||||
assert((ieee64+ieee32+ieee64big+ieee32big)==1);
|
||||
//////////////////////////////////////////////////////////////////////////////
|
||||
// Do the I/O
|
||||
//////////////////////////////////////////////////////////////////////////////
|
||||
@ -370,7 +371,7 @@ PARALLEL_CRITICAL
|
||||
#endif
|
||||
} else {
|
||||
std::cout << GridLogMessage <<"IOobject: C++ read I/O " << file << " : "
|
||||
<< iodata.size() * sizeof(fobj) << " bytes" << std::endl;
|
||||
<< iodata.size() * sizeof(fobj) << " bytes and offset " << offset << std::endl;
|
||||
std::ifstream fin;
|
||||
fin.open(file, std::ios::binary | std::ios::in);
|
||||
if (control & BINARYIO_MASTER_APPEND)
|
||||
@ -582,7 +583,9 @@ PARALLEL_CRITICAL
|
||||
typedef typename vobj::scalar_object sobj;
|
||||
typedef typename vobj::Realified::scalar_type word; word w=0;
|
||||
GridBase *grid = Umu._grid;
|
||||
uint64_t lsites = grid->lSites();
|
||||
uint64_t lsites = grid->lSites(), offsetCopy = offset;
|
||||
int attemptsLeft = std::max(0, BinaryIO::latticeWriteMaxRetry);
|
||||
bool checkWrite = (BinaryIO::latticeWriteMaxRetry >= 0);
|
||||
|
||||
std::vector<sobj> scalardata(lsites);
|
||||
std::vector<fobj> iodata(lsites); // Munge, checksum, byte order in here
|
||||
@ -597,9 +600,36 @@ PARALLEL_CRITICAL
|
||||
|
||||
grid->Barrier();
|
||||
timer.Stop();
|
||||
while (attemptsLeft >= 0)
|
||||
{
|
||||
grid->Barrier();
|
||||
IOobject(w,grid,iodata,file,offset,format,BINARYIO_WRITE|BINARYIO_LEXICOGRAPHIC,
|
||||
nersc_csum,scidac_csuma,scidac_csumb);
|
||||
if (checkWrite)
|
||||
{
|
||||
std::vector<fobj> ckiodata(lsites);
|
||||
uint32_t cknersc_csum, ckscidac_csuma, ckscidac_csumb;
|
||||
uint64_t ckoffset = offsetCopy;
|
||||
|
||||
IOobject(w,grid,iodata,file,offset,format,BINARYIO_WRITE|BINARYIO_LEXICOGRAPHIC,
|
||||
nersc_csum,scidac_csuma,scidac_csumb);
|
||||
std::cout << GridLogMessage << "writeLatticeObject: read back object" << std::endl;
|
||||
grid->Barrier();
|
||||
IOobject(w,grid,ckiodata,file,ckoffset,format,BINARYIO_READ|BINARYIO_LEXICOGRAPHIC,
|
||||
cknersc_csum,ckscidac_csuma,ckscidac_csumb);
|
||||
if ((cknersc_csum != nersc_csum) or (ckscidac_csuma != scidac_csuma) or (ckscidac_csumb != scidac_csumb))
|
||||
{
|
||||
std::cout << GridLogMessage << "writeLatticeObject: read test checksum failure, re-writing (" << attemptsLeft << " attempt(s) remaining)" << std::endl;
|
||||
offset = offsetCopy;
|
||||
parallel_for(uint64_t x=0;x<lsites;x++) munge(scalardata[x],iodata[x]);
|
||||
}
|
||||
else
|
||||
{
|
||||
std::cout << GridLogMessage << "writeLatticeObject: read test checksum correct" << std::endl;
|
||||
break;
|
||||
}
|
||||
}
|
||||
attemptsLeft--;
|
||||
}
|
||||
|
||||
|
||||
std::cout<<GridLogMessage<<"writeLatticeObject: unvectorize overhead "<<timer.Elapsed() <<std::endl;
|
||||
}
|
||||
@ -725,5 +755,6 @@ PARALLEL_CRITICAL
|
||||
std::cout << GridLogMessage << "RNG state overhead " << timer.Elapsed() << std::endl;
|
||||
}
|
||||
};
|
||||
|
||||
}
|
||||
#endif
|
@ -46,6 +46,12 @@ extern "C" {
|
||||
namespace Grid {
|
||||
namespace QCD {
|
||||
|
||||
#define GRID_FIELD_NORM "FieldNormMetaData"
|
||||
#define GRID_FIELD_NORM_CALC(FieldNormMetaData_, n2ck) \
|
||||
0.5*fabs(FieldNormMetaData_.norm2 - n2ck)/(FieldNormMetaData_.norm2 + n2ck)
|
||||
#define GRID_FIELD_NORM_CHECK(FieldNormMetaData_, n2ck) \
|
||||
assert(GRID_FIELD_NORM_CALC(FieldNormMetaData_, n2ck) < 1.0e-5);
|
||||
|
||||
/////////////////////////////////
|
||||
// Encode word types as strings
|
||||
/////////////////////////////////
|
||||
@ -205,6 +211,7 @@ class GridLimeReader : public BinaryIO {
|
||||
{
|
||||
typedef typename vobj::scalar_object sobj;
|
||||
scidacChecksum scidacChecksum_;
|
||||
FieldNormMetaData FieldNormMetaData_;
|
||||
uint32_t nersc_csum,scidac_csuma,scidac_csumb;
|
||||
|
||||
std::string format = getFormatString<vobj>();
|
||||
@ -233,25 +240,56 @@ class GridLimeReader : public BinaryIO {
|
||||
// std::cout << " ReadLatticeObject from offset "<<offset << std::endl;
|
||||
BinarySimpleMunger<sobj,sobj> munge;
|
||||
BinaryIO::readLatticeObject< vobj, sobj >(field, filename, munge, offset, format,nersc_csum,scidac_csuma,scidac_csumb);
|
||||
|
||||
std::cout << GridLogMessage << "SciDAC checksum A " << std::hex << scidac_csuma << std::dec << std::endl;
|
||||
std::cout << GridLogMessage << "SciDAC checksum B " << std::hex << scidac_csumb << std::dec << std::endl;
|
||||
/////////////////////////////////////////////
|
||||
// Insist checksum is next record
|
||||
/////////////////////////////////////////////
|
||||
readLimeObject(scidacChecksum_,std::string("scidacChecksum"),std::string(SCIDAC_CHECKSUM));
|
||||
|
||||
readScidacChecksum(scidacChecksum_,FieldNormMetaData_);
|
||||
/////////////////////////////////////////////
|
||||
// Verify checksums
|
||||
/////////////////////////////////////////////
|
||||
if(FieldNormMetaData_.norm2 != 0.0){
|
||||
RealD n2ck = norm2(field);
|
||||
std::cout << GridLogMessage << "Field norm: metadata= " << FieldNormMetaData_.norm2
|
||||
<< " / field= " << n2ck << " / rdiff= " << GRID_FIELD_NORM_CALC(FieldNormMetaData_,n2ck) << std::endl;
|
||||
GRID_FIELD_NORM_CHECK(FieldNormMetaData_,n2ck);
|
||||
}
|
||||
assert(scidacChecksumVerify(scidacChecksum_,scidac_csuma,scidac_csumb)==1);
|
||||
|
||||
// find out if next field is a GridFieldNorm
|
||||
return;
|
||||
}
|
||||
}
|
||||
}
|
||||
void readScidacChecksum(scidacChecksum &scidacChecksum_,
|
||||
FieldNormMetaData &FieldNormMetaData_)
|
||||
{
|
||||
FieldNormMetaData_.norm2 =0.0;
|
||||
std::string scidac_str(SCIDAC_CHECKSUM);
|
||||
std::string field_norm_str(GRID_FIELD_NORM);
|
||||
while ( limeReaderNextRecord(LimeR) == LIME_SUCCESS ) {
|
||||
uint64_t nbytes = limeReaderBytes(LimeR);//size of this record (configuration)
|
||||
std::vector<char> xmlc(nbytes+1,'\0');
|
||||
limeReaderReadData((void *)&xmlc[0], &nbytes, LimeR);
|
||||
std::string xmlstring = std::string(&xmlc[0]);
|
||||
XmlReader RD(xmlstring, true, "");
|
||||
if ( !strncmp(limeReaderType(LimeR), field_norm_str.c_str(),strlen(field_norm_str.c_str()) ) ) {
|
||||
// std::cout << "FieldNormMetaData "<<xmlstring<<std::endl;
|
||||
read(RD,field_norm_str,FieldNormMetaData_);
|
||||
}
|
||||
if ( !strncmp(limeReaderType(LimeR), scidac_str.c_str(),strlen(scidac_str.c_str()) ) ) {
|
||||
// std::cout << SCIDAC_CHECKSUM << " " <<xmlstring<<std::endl;
|
||||
read(RD,std::string("scidacChecksum"),scidacChecksum_);
|
||||
return;
|
||||
}
|
||||
}
|
||||
assert(0);
|
||||
}
|
||||
////////////////////////////////////////////
|
||||
// Read a generic serialisable object
|
||||
////////////////////////////////////////////
|
||||
template<class serialisable_object>
|
||||
void readLimeObject(serialisable_object &object,std::string object_name,std::string record_name)
|
||||
void readLimeObject(std::string &xmlstring,std::string record_name)
|
||||
{
|
||||
// should this be a do while; can we miss a first record??
|
||||
while ( limeReaderNextRecord(LimeR) == LIME_SUCCESS ) {
|
||||
@ -266,15 +304,23 @@ class GridLimeReader : public BinaryIO {
|
||||
limeReaderReadData((void *)&xmlc[0], &nbytes, LimeR);
|
||||
// std::cout << GridLogMessage<< " readLimeObject matches XML " << &xmlc[0] <<std::endl;
|
||||
|
||||
std::string xmlstring(&xmlc[0]);
|
||||
XmlReader RD(xmlstring, true, "");
|
||||
read(RD,object_name,object);
|
||||
xmlstring = std::string(&xmlc[0]);
|
||||
return;
|
||||
}
|
||||
|
||||
}
|
||||
assert(0);
|
||||
}
|
||||
|
||||
template<class serialisable_object>
|
||||
void readLimeObject(serialisable_object &object,std::string object_name,std::string record_name)
|
||||
{
|
||||
std::string xmlstring;
|
||||
|
||||
readLimeObject(xmlstring, record_name);
|
||||
XmlReader RD(xmlstring, true, "");
|
||||
read(RD,object_name,object);
|
||||
}
|
||||
};
|
||||
|
||||
class GridLimeWriter : public BinaryIO
|
||||
@ -325,16 +371,11 @@ class GridLimeWriter : public BinaryIO
|
||||
////////////////////////////////////////////
|
||||
// Write a generic serialisable object
|
||||
////////////////////////////////////////////
|
||||
template<class serialisable_object>
|
||||
void writeLimeObject(int MB,int ME,serialisable_object &object,std::string object_name,std::string record_name)
|
||||
void writeLimeObject(int MB,int ME,XmlWriter &writer,std::string object_name,std::string record_name)
|
||||
{
|
||||
if ( boss_node ) {
|
||||
std::string xmlstring;
|
||||
{
|
||||
XmlWriter WR("","");
|
||||
write(WR,object_name,object);
|
||||
xmlstring = WR.XmlString();
|
||||
}
|
||||
std::string xmlstring = writer.docString();
|
||||
|
||||
// std::cout << "WriteLimeObject" << record_name <<std::endl;
|
||||
uint64_t nbytes = xmlstring.size();
|
||||
// std::cout << " xmlstring "<< nbytes<< " " << xmlstring <<std::endl;
|
||||
@ -348,6 +389,20 @@ class GridLimeWriter : public BinaryIO
|
||||
limeDestroyHeader(h);
|
||||
}
|
||||
}
|
||||
|
||||
template<class serialisable_object>
|
||||
void writeLimeObject(int MB,int ME,serialisable_object &object,std::string object_name,std::string record_name, const unsigned int scientificPrec = 0)
|
||||
{
|
||||
XmlWriter WR("","");
|
||||
|
||||
if (scientificPrec)
|
||||
{
|
||||
WR.scientificFormat(true);
|
||||
WR.setPrecision(scientificPrec);
|
||||
}
|
||||
write(WR,object_name,object);
|
||||
writeLimeObject(MB, ME, WR, object_name, record_name);
|
||||
}
|
||||
////////////////////////////////////////////////////
|
||||
// Write a generic lattice field and csum
|
||||
// This routine is Collectively called by all nodes
|
||||
@ -373,6 +428,8 @@ class GridLimeWriter : public BinaryIO
|
||||
GridBase *grid = field._grid;
|
||||
assert(boss_node == field._grid->IsBoss() );
|
||||
|
||||
FieldNormMetaData FNMD; FNMD.norm2 = norm2(field);
|
||||
|
||||
////////////////////////////////////////////
|
||||
// Create record header
|
||||
////////////////////////////////////////////
|
||||
@ -431,6 +488,7 @@ class GridLimeWriter : public BinaryIO
|
||||
checksum.suma= streama.str();
|
||||
checksum.sumb= streamb.str();
|
||||
if ( boss_node ) {
|
||||
writeLimeObject(0,0,FNMD,std::string(GRID_FIELD_NORM),std::string(GRID_FIELD_NORM));
|
||||
writeLimeObject(0,1,checksum,std::string("scidacChecksum"),std::string(SCIDAC_CHECKSUM));
|
||||
}
|
||||
}
|
||||
@ -454,7 +512,8 @@ class ScidacWriter : public GridLimeWriter {
|
||||
// Write generic lattice field in scidac format
|
||||
////////////////////////////////////////////////
|
||||
template <class vobj, class userRecord>
|
||||
void writeScidacFieldRecord(Lattice<vobj> &field,userRecord _userRecord)
|
||||
void writeScidacFieldRecord(Lattice<vobj> &field,userRecord _userRecord,
|
||||
const unsigned int recordScientificPrec = 0)
|
||||
{
|
||||
GridBase * grid = field._grid;
|
||||
|
||||
@ -472,7 +531,7 @@ class ScidacWriter : public GridLimeWriter {
|
||||
//////////////////////////////////////////////
|
||||
if ( this->boss_node ) {
|
||||
writeLimeObject(1,0,header ,std::string("FieldMetaData"),std::string(GRID_FORMAT)); // Open message
|
||||
writeLimeObject(0,0,_userRecord,_userRecord.SerialisableClassName(),std::string(SCIDAC_RECORD_XML));
|
||||
writeLimeObject(0,0,_userRecord,_userRecord.SerialisableClassName(),std::string(SCIDAC_RECORD_XML), recordScientificPrec);
|
||||
writeLimeObject(0,0,_scidacRecord,_scidacRecord.SerialisableClassName(),std::string(SCIDAC_PRIVATE_RECORD_XML));
|
||||
}
|
||||
// Collective call
|
||||
@ -607,6 +666,12 @@ class IldgWriter : public ScidacWriter {
|
||||
assert(header.nd==4);
|
||||
assert(header.nd==header.dimension.size());
|
||||
|
||||
//////////////////////////////////////////////////////////////////////////////
|
||||
// Field norm tests
|
||||
//////////////////////////////////////////////////////////////////////////////
|
||||
FieldNormMetaData FieldNormMetaData_;
|
||||
FieldNormMetaData_.norm2 = norm2(Umu);
|
||||
|
||||
//////////////////////////////////////////////////////////////////////////////
|
||||
// Fill the USQCD info field
|
||||
//////////////////////////////////////////////////////////////////////////////
|
||||
@ -615,11 +680,12 @@ class IldgWriter : public ScidacWriter {
|
||||
info.plaq = header.plaquette;
|
||||
info.linktr = header.link_trace;
|
||||
|
||||
std::cout << GridLogMessage << " Writing config; IldgIO "<<std::endl;
|
||||
// std::cout << GridLogMessage << " Writing config; IldgIO n2 "<< FieldNormMetaData_.norm2<<std::endl;
|
||||
//////////////////////////////////////////////
|
||||
// Fill the Lime file record by record
|
||||
//////////////////////////////////////////////
|
||||
writeLimeObject(1,0,header ,std::string("FieldMetaData"),std::string(GRID_FORMAT)); // Open message
|
||||
writeLimeObject(0,0,FieldNormMetaData_,FieldNormMetaData_.SerialisableClassName(),std::string(GRID_FIELD_NORM));
|
||||
writeLimeObject(0,0,_scidacFile,_scidacFile.SerialisableClassName(),std::string(SCIDAC_PRIVATE_FILE_XML));
|
||||
writeLimeObject(0,1,info,info.SerialisableClassName(),std::string(SCIDAC_FILE_XML));
|
||||
writeLimeObject(1,0,_scidacRecord,_scidacRecord.SerialisableClassName(),std::string(SCIDAC_PRIVATE_RECORD_XML));
|
||||
@ -662,6 +728,7 @@ class IldgReader : public GridLimeReader {
|
||||
std::string ildgLFN_ ;
|
||||
scidacChecksum scidacChecksum_;
|
||||
usqcdInfo usqcdInfo_ ;
|
||||
FieldNormMetaData FieldNormMetaData_;
|
||||
|
||||
// track what we read from file
|
||||
int found_ildgFormat =0;
|
||||
@ -670,7 +737,7 @@ class IldgReader : public GridLimeReader {
|
||||
int found_usqcdInfo =0;
|
||||
int found_ildgBinary =0;
|
||||
int found_FieldMetaData =0;
|
||||
|
||||
int found_FieldNormMetaData =0;
|
||||
uint32_t nersc_csum;
|
||||
uint32_t scidac_csuma;
|
||||
uint32_t scidac_csumb;
|
||||
@ -704,7 +771,7 @@ class IldgReader : public GridLimeReader {
|
||||
//////////////////////////////////
|
||||
// ILDG format record
|
||||
|
||||
std::string xmlstring(&xmlc[0]);
|
||||
std::string xmlstring(&xmlc[0]);
|
||||
if ( !strncmp(limeReaderType(LimeR), ILDG_FORMAT,strlen(ILDG_FORMAT)) ) {
|
||||
|
||||
XmlReader RD(xmlstring, true, "");
|
||||
@ -757,11 +824,17 @@ class IldgReader : public GridLimeReader {
|
||||
found_scidacChecksum = 1;
|
||||
}
|
||||
|
||||
if ( !strncmp(limeReaderType(LimeR), GRID_FIELD_NORM,strlen(GRID_FIELD_NORM)) ) {
|
||||
XmlReader RD(xmlstring, true, "");
|
||||
read(RD,GRID_FIELD_NORM,FieldNormMetaData_);
|
||||
found_FieldNormMetaData = 1;
|
||||
}
|
||||
|
||||
} else {
|
||||
/////////////////////////////////
|
||||
// Binary data
|
||||
/////////////////////////////////
|
||||
std::cout << GridLogMessage << "ILDG Binary record found : " ILDG_BINARY_DATA << std::endl;
|
||||
// std::cout << GridLogMessage << "ILDG Binary record found : " ILDG_BINARY_DATA << std::endl;
|
||||
uint64_t offset= ftello(File);
|
||||
if ( format == std::string("IEEE64BIG") ) {
|
||||
GaugeSimpleMunger<dobj, sobj> munge;
|
||||
@ -828,6 +901,13 @@ class IldgReader : public GridLimeReader {
|
||||
////////////////////////////////////////////////////////////
|
||||
// Really really want to mandate a scidac checksum
|
||||
////////////////////////////////////////////////////////////
|
||||
if ( found_FieldNormMetaData ) {
|
||||
RealD nn = norm2(Umu);
|
||||
GRID_FIELD_NORM_CHECK(FieldNormMetaData_,nn);
|
||||
std::cout << GridLogMessage<<"FieldNormMetaData matches " << std::endl;
|
||||
} else {
|
||||
std::cout << GridLogWarning<<"FieldNormMetaData not found. " << std::endl;
|
||||
}
|
||||
if ( found_scidacChecksum ) {
|
||||
FieldMetaData_.scidac_checksuma = stoull(scidacChecksum_.suma,0,16);
|
||||
FieldMetaData_.scidac_checksumb = stoull(scidacChecksum_.sumb,0,16);
|
@ -56,6 +56,10 @@ namespace Grid {
|
||||
////////////////////////////////////////////////////////////////////////////////
|
||||
// header specification/interpretation
|
||||
////////////////////////////////////////////////////////////////////////////////
|
||||
class FieldNormMetaData : Serializable {
|
||||
public:
|
||||
GRID_SERIALIZABLE_CLASS_MEMBERS(FieldNormMetaData, double, norm2);
|
||||
};
|
||||
class FieldMetaData : Serializable {
|
||||
public:
|
||||
|
Some files were not shown because too many files have changed in this diff Show More
Reference in New Issue
Block a user