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			feature/kn
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| 6f090e22c0 | |||
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| 4a7f3d1b7b | |||
| c4e2202550 | |||
| 538b16610b | 
							
								
								
									
										26
									
								
								.gitignore
									
									
									
									
										vendored
									
									
								
							
							
						
						
									
										26
									
								
								.gitignore
									
									
									
									
										vendored
									
									
								
							| @@ -9,6 +9,7 @@ | |||||||
| ################ | ################ | ||||||
| *~ | *~ | ||||||
| *# | *# | ||||||
|  | *.sublime-* | ||||||
|  |  | ||||||
| # Precompiled Headers # | # Precompiled Headers # | ||||||
| ####################### | ####################### | ||||||
| @@ -47,7 +48,9 @@ Config.h.in | |||||||
| config.log | config.log | ||||||
| config.status | config.status | ||||||
| .deps | .deps | ||||||
| *.inc | Make.inc | ||||||
|  | eigen.inc | ||||||
|  | Eigen.inc | ||||||
|  |  | ||||||
| # http://www.gnu.org/software/autoconf # | # http://www.gnu.org/software/autoconf # | ||||||
| ######################################## | ######################################## | ||||||
| @@ -80,25 +83,36 @@ ltmain.sh | |||||||
| .Trashes | .Trashes | ||||||
| ehthumbs.db | ehthumbs.db | ||||||
| Thumbs.db | Thumbs.db | ||||||
|  | .dirstamp | ||||||
|  |  | ||||||
| # build directory # | # build directory # | ||||||
| ################### | ################### | ||||||
| build*/* | build*/* | ||||||
|  | Documentation/_build | ||||||
|  |  | ||||||
| # IDE related files # | # IDE related files # | ||||||
| ##################### | ##################### | ||||||
| *.xcodeproj/* | *.xcodeproj/* | ||||||
| build.sh | build.sh | ||||||
|  | .vscode | ||||||
|  | *.code-workspace | ||||||
|  |  | ||||||
| # Eigen source # | # Eigen source # | ||||||
| ################ | ################ | ||||||
| lib/Eigen/* | Grid/Eigen | ||||||
|  | Eigen/* | ||||||
| # FFTW source # |  | ||||||
| ################ |  | ||||||
| lib/fftw/* |  | ||||||
|  |  | ||||||
| # libtool macros # | # libtool macros # | ||||||
| ################## | ################## | ||||||
| m4/lt* | m4/lt* | ||||||
| m4/libtool.m4 | m4/libtool.m4 | ||||||
|  |  | ||||||
|  | # github pages # | ||||||
|  | ################ | ||||||
|  | gh-pages/ | ||||||
|  |  | ||||||
|  | # generated sources # | ||||||
|  | ##################### | ||||||
|  | Grid/qcd/spin/gamma-gen/*.h | ||||||
|  | Grid/qcd/spin/gamma-gen/*.cc | ||||||
|  | Grid/util/Version.h | ||||||
|   | |||||||
							
								
								
									
										106
									
								
								.travis.yml
									
									
									
									
									
								
							
							
						
						
									
										106
									
								
								.travis.yml
									
									
									
									
									
								
							| @@ -1,106 +0,0 @@ | |||||||
| language: cpp |  | ||||||
|  |  | ||||||
| cache: |  | ||||||
|   directories: |  | ||||||
|     - clang |  | ||||||
|  |  | ||||||
| matrix: |  | ||||||
|   include: |  | ||||||
|     - os:        osx |  | ||||||
|       osx_image: xcode7.2 |  | ||||||
|       compiler: clang |  | ||||||
|     - compiler: gcc |  | ||||||
|       addons: |  | ||||||
|         apt: |  | ||||||
|           sources: |  | ||||||
|             - ubuntu-toolchain-r-test |  | ||||||
|           packages: |  | ||||||
|             - g++-4.9 |  | ||||||
|             - libmpfr-dev |  | ||||||
|             - libgmp-dev |  | ||||||
|             - libmpc-dev |  | ||||||
|             - libopenmpi-dev |  | ||||||
|             - openmpi-bin |  | ||||||
|             - binutils-dev |  | ||||||
|       env: VERSION=-4.9 |  | ||||||
|     - compiler: gcc |  | ||||||
|       addons: |  | ||||||
|         apt: |  | ||||||
|           sources: |  | ||||||
|             - ubuntu-toolchain-r-test |  | ||||||
|           packages: |  | ||||||
|             - g++-5 |  | ||||||
|             - libmpfr-dev |  | ||||||
|             - libgmp-dev |  | ||||||
|             - libmpc-dev |  | ||||||
|             - libopenmpi-dev |  | ||||||
|             - openmpi-bin |  | ||||||
|             - binutils-dev |  | ||||||
|       env: VERSION=-5 |  | ||||||
|     - compiler: clang |  | ||||||
|       addons: |  | ||||||
|         apt: |  | ||||||
|           sources: |  | ||||||
|             - ubuntu-toolchain-r-test |  | ||||||
|           packages: |  | ||||||
|             - g++-4.8 |  | ||||||
|             - libmpfr-dev |  | ||||||
|             - libgmp-dev |  | ||||||
|             - libmpc-dev |  | ||||||
|             - libopenmpi-dev |  | ||||||
|             - openmpi-bin |  | ||||||
|             - binutils-dev |  | ||||||
|       env: CLANG_LINK=http://llvm.org/releases/3.8.0/clang+llvm-3.8.0-x86_64-linux-gnu-ubuntu-14.04.tar.xz |  | ||||||
|     - compiler: clang |  | ||||||
|       addons: |  | ||||||
|         apt: |  | ||||||
|           sources: |  | ||||||
|             - ubuntu-toolchain-r-test |  | ||||||
|           packages: |  | ||||||
|             - g++-4.8 |  | ||||||
|             - libmpfr-dev |  | ||||||
|             - libgmp-dev |  | ||||||
|             - libmpc-dev |  | ||||||
|             - libopenmpi-dev |  | ||||||
|             - openmpi-bin |  | ||||||
|             - binutils-dev |  | ||||||
|       env: CLANG_LINK=http://llvm.org/releases/3.7.0/clang+llvm-3.7.0-x86_64-linux-gnu-ubuntu-14.04.tar.xz |  | ||||||
|        |  | ||||||
| before_install: |  | ||||||
|     - export GRIDDIR=`pwd` |  | ||||||
|     - if [[ "$TRAVIS_OS_NAME" == "linux" ]] && [[ "$CC" == "clang" ]] && [ ! -e clang/bin ]; then wget $CLANG_LINK; tar -xf `basename $CLANG_LINK`; mkdir clang; mv clang+*/* clang/; fi |  | ||||||
|     - if [[ "$TRAVIS_OS_NAME" == "linux" ]] && [[ "$CC" == "clang" ]]; then export PATH="${GRIDDIR}/clang/bin:${PATH}"; fi |  | ||||||
|     - if [[ "$TRAVIS_OS_NAME" == "linux" ]] && [[ "$CC" == "clang" ]]; then export LD_LIBRARY_PATH="${GRIDDIR}/clang/lib:${LD_LIBRARY_PATH}"; fi |  | ||||||
|     - if [[ "$TRAVIS_OS_NAME" == "osx" ]]; then brew update; fi |  | ||||||
|     - if [[ "$TRAVIS_OS_NAME" == "osx" ]]; then brew install libmpc; fi |  | ||||||
|     - if [[ "$TRAVIS_OS_NAME" == "osx" ]]; then brew install openmpi; fi |  | ||||||
|     - if [[ "$TRAVIS_OS_NAME" == "osx" ]] && [[ "$CC" == "gcc" ]]; then brew install gcc5; fi |  | ||||||
|      |  | ||||||
| install: |  | ||||||
|     - export CC=$CC$VERSION |  | ||||||
|     - export CXX=$CXX$VERSION |  | ||||||
|     - echo $PATH |  | ||||||
|     - which $CC |  | ||||||
|     - $CC  --version |  | ||||||
|     - which $CXX |  | ||||||
|     - $CXX --version |  | ||||||
|     - if [[ "$TRAVIS_OS_NAME" == "osx" ]]; then export LDFLAGS='-L/usr/local/lib'; fi |  | ||||||
|      |  | ||||||
| script: |  | ||||||
|     - ./bootstrap.sh |  | ||||||
|     - mkdir build |  | ||||||
|     - cd build |  | ||||||
|     - ../configure --enable-precision=single --enable-simd=SSE4 --enable-comms=none |  | ||||||
|     - make -j4  |  | ||||||
|     - ./benchmarks/Benchmark_dwf --threads 1 |  | ||||||
|     - echo make clean |  | ||||||
|     - ../configure --enable-precision=double --enable-simd=SSE4 --enable-comms=none |  | ||||||
|     - make -j4 |  | ||||||
|     - ./benchmarks/Benchmark_dwf --threads 1 |  | ||||||
|     - echo make clean |  | ||||||
|     - if [[ "$TRAVIS_OS_NAME" == "linux" ]]; then export CXXFLAGS='-DMPI_UINT32_T=MPI_UNSIGNED -DMPI_UINT64_T=MPI_UNSIGNED_LONG'; fi |  | ||||||
|     - ../configure --enable-precision=single --enable-simd=SSE4 --enable-comms=mpi-auto |  | ||||||
|     - make -j4 |  | ||||||
|     - if [[ "$TRAVIS_OS_NAME" == "linux" ]]; then mpirun.openmpi -n 2 ./benchmarks/Benchmark_dwf --threads 1 --mpi 2.1.1.1; fi |  | ||||||
|     - if [[ "$TRAVIS_OS_NAME" == "osx" ]]; then mpirun -n 2 ./benchmarks/Benchmark_dwf --threads 1 --mpi 2.1.1.1; fi |  | ||||||
|  |  | ||||||
| @@ -0,0 +1,5 @@ | |||||||
|  | Version : 0.8.0 | ||||||
|  |  | ||||||
|  | - Clang 3.5 and above, ICPC v16 and above, GCC 6.3 and above recommended | ||||||
|  | - MPI and MPI3 comms optimisations for KNL and OPA finished | ||||||
|  | - Half precision comms | ||||||
|   | |||||||
							
								
								
									
										65
									
								
								Grid/DisableWarnings.h
									
									
									
									
									
										Normal file
									
								
							
							
						
						
									
										65
									
								
								Grid/DisableWarnings.h
									
									
									
									
									
										Normal file
									
								
							| @@ -0,0 +1,65 @@ | |||||||
|  | /************************************************************************************* | ||||||
|  |  | ||||||
|  | Grid physics library, www.github.com/paboyle/Grid | ||||||
|  |  | ||||||
|  | Source file: ./lib/DisableWarnings.h | ||||||
|  |  | ||||||
|  | Copyright (C) 2016 | ||||||
|  |  | ||||||
|  | Author: Guido Cossu <guido.cossu@ed.ac.uk> | ||||||
|  |  | ||||||
|  | This program is free software; you can redistribute it and/or modify | ||||||
|  | it under the terms of the GNU General Public License as published by | ||||||
|  | the Free Software Foundation; either version 2 of the License, or | ||||||
|  | (at your option) any later version. | ||||||
|  |  | ||||||
|  | This program is distributed in the hope that it will be useful, | ||||||
|  | but WITHOUT ANY WARRANTY; without even the implied warranty of | ||||||
|  | MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the | ||||||
|  | GNU General Public License for more details. | ||||||
|  |  | ||||||
|  | You should have received a copy of the GNU General Public License along | ||||||
|  | with this program; if not, write to the Free Software Foundation, Inc., | ||||||
|  | 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. | ||||||
|  |  | ||||||
|  | See the full license in the file "LICENSE" in the top level distribution | ||||||
|  | directory | ||||||
|  | *************************************************************************************/ | ||||||
|  | /*  END LEGAL */ | ||||||
|  |  | ||||||
|  | #ifndef DISABLE_WARNINGS_H | ||||||
|  | #define DISABLE_WARNINGS_H | ||||||
|  |  | ||||||
|  |  | ||||||
|  |  | ||||||
|  | #if defined __GNUC__ && __GNUC__>=6 | ||||||
|  | #pragma GCC diagnostic ignored "-Wignored-attributes" | ||||||
|  | #endif | ||||||
|  |  | ||||||
|  |  //disables and intel compiler specific warning (in json.hpp) | ||||||
|  | #ifdef __ICC | ||||||
|  | #pragma warning disable 488   | ||||||
|  | #endif | ||||||
|  |  | ||||||
|  | #ifdef __NVCC__ | ||||||
|  |  //disables nvcc specific warning in json.hpp | ||||||
|  | #pragma clang diagnostic ignored "-Wdeprecated-register" | ||||||
|  | #pragma diag_suppress unsigned_compare_with_zero | ||||||
|  | #pragma diag_suppress cast_to_qualified_type | ||||||
|  |  | ||||||
|  |  //disables nvcc specific warning in many files | ||||||
|  | #pragma diag_suppress esa_on_defaulted_function_ignored | ||||||
|  | #pragma diag_suppress extra_semicolon | ||||||
|  |  | ||||||
|  | //Eigen only | ||||||
|  | #endif | ||||||
|  |  | ||||||
|  | // Disable vectorisation in Eigen on the Power8/9 and PowerPC | ||||||
|  | #ifdef  __ALTIVEC__ | ||||||
|  | #define  EIGEN_DONT_VECTORIZE | ||||||
|  | #endif | ||||||
|  | #ifdef  __VSX__ | ||||||
|  | #define  EIGEN_DONT_VECTORIZE | ||||||
|  | #endif | ||||||
|  |  | ||||||
|  | #endif | ||||||
							
								
								
									
										50
									
								
								Grid/Grid.h
									
									
									
									
									
										Normal file
									
								
							
							
						
						
									
										50
									
								
								Grid/Grid.h
									
									
									
									
									
										Normal file
									
								
							| @@ -0,0 +1,50 @@ | |||||||
|  |     /************************************************************************************* | ||||||
|  |  | ||||||
|  |     Grid physics library, www.github.com/paboyle/Grid  | ||||||
|  |  | ||||||
|  |     Source file: ./lib/Grid.h | ||||||
|  |  | ||||||
|  |     Copyright (C) 2015 | ||||||
|  |  | ||||||
|  | Author: Peter Boyle <paboyle@ph.ed.ac.uk> | ||||||
|  | Author: azusayamaguchi <ayamaguc@YAMAKAZE.local> | ||||||
|  | Author: paboyle <paboyle@ph.ed.ac.uk> | ||||||
|  |  | ||||||
|  |     This program is free software; you can redistribute it and/or modify | ||||||
|  |     it under the terms of the GNU General Public License as published by | ||||||
|  |     the Free Software Foundation; either version 2 of the License, or | ||||||
|  |     (at your option) any later version. | ||||||
|  |  | ||||||
|  |     This program is distributed in the hope that it will be useful, | ||||||
|  |     but WITHOUT ANY WARRANTY; without even the implied warranty of | ||||||
|  |     MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the | ||||||
|  |     GNU General Public License for more details. | ||||||
|  |  | ||||||
|  |     You should have received a copy of the GNU General Public License along | ||||||
|  |     with this program; if not, write to the Free Software Foundation, Inc., | ||||||
|  |     51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. | ||||||
|  |  | ||||||
|  |     See the full license in the file "LICENSE" in the top level distribution directory | ||||||
|  |     *************************************************************************************/ | ||||||
|  |     /*  END LEGAL */ | ||||||
|  | // | ||||||
|  | //  Grid.h | ||||||
|  | //  simd | ||||||
|  | // | ||||||
|  | //  Created by Peter Boyle on 09/05/2014. | ||||||
|  | //  Copyright (c) 2014 University of Edinburgh. All rights reserved. | ||||||
|  | // | ||||||
|  |  | ||||||
|  | #ifndef GRID_H | ||||||
|  | #define GRID_H | ||||||
|  |  | ||||||
|  | #include <Grid/GridCore.h> | ||||||
|  | #include <Grid/GridQCDcore.h> | ||||||
|  | #include <Grid/qcd/action/Action.h> | ||||||
|  | #include <Grid/qcd/utils/GaugeFix.h> | ||||||
|  | #include <Grid/qcd/utils/CovariantSmearing.h> | ||||||
|  | #include <Grid/qcd/smearing/Smearing.h> | ||||||
|  | #include <Grid/parallelIO/MetaData.h> | ||||||
|  | #include <Grid/qcd/hmc/HMC_aggregate.h> | ||||||
|  |  | ||||||
|  | #endif | ||||||
| @@ -35,56 +35,31 @@ Author: paboyle <paboyle@ph.ed.ac.uk> | |||||||
| //  Copyright (c) 2014 University of Edinburgh. All rights reserved.
 | //  Copyright (c) 2014 University of Edinburgh. All rights reserved.
 | ||||||
| //
 | //
 | ||||||
| 
 | 
 | ||||||
| #ifndef GRID_H | #ifndef GRID_BASE_H | ||||||
| #define GRID_H | #define GRID_BASE_H | ||||||
| 
 | 
 | ||||||
| ///////////////////
 |  | ||||||
| // Std C++ dependencies
 |  | ||||||
| ///////////////////
 |  | ||||||
| #include <cassert> |  | ||||||
| #include <complex> |  | ||||||
| #include <vector> |  | ||||||
| #include <iostream> |  | ||||||
| #include <iomanip> |  | ||||||
| #include <random> |  | ||||||
| #include <functional> |  | ||||||
| #include <stdio.h> |  | ||||||
| #include <stdlib.h> |  | ||||||
| #include <stdio.h> |  | ||||||
| #include <signal.h> |  | ||||||
| #include <ctime> |  | ||||||
| #include <sys/time.h> |  | ||||||
| #include <chrono> |  | ||||||
| 
 | 
 | ||||||
| ///////////////////
 | #include <Grid/DisableWarnings.h> | ||||||
| // Grid headers
 | #include <Grid/Namespace.h> | ||||||
| ///////////////////
 | #include <Grid/GridStd.h> | ||||||
|  | #include <Grid/threads/Pragmas.h> | ||||||
|  | #include <Grid/perfmon/Timer.h> | ||||||
|  | #include <Grid/perfmon/PerfCount.h> | ||||||
|  | #include <Grid/util/Util.h> | ||||||
|  | #include <Grid/log/Log.h> | ||||||
|  | #include <Grid/allocator/Allocator.h> | ||||||
|  | #include <Grid/simd/Simd.h> | ||||||
|  | #include <Grid/threads/ThreadReduction.h> | ||||||
| #include <Grid/serialisation/Serialisation.h> | #include <Grid/serialisation/Serialisation.h> | ||||||
| #include "Config.h" | #include <Grid/util/Sha.h> | ||||||
| #include <Grid/Timer.h> | #include <Grid/communicator/Communicator.h>  | ||||||
| #include <Grid/PerfCount.h> | #include <Grid/cartesian/Cartesian.h>     | ||||||
| #include <Grid/Log.h> | #include <Grid/tensors/Tensors.h>       | ||||||
| #include <Grid/AlignedAllocator.h> | #include <Grid/lattice/Lattice.h>       | ||||||
| #include <Grid/Simd.h> | #include <Grid/cshift/Cshift.h>        | ||||||
| #include <Grid/Threads.h> | #include <Grid/stencil/Stencil.h>       | ||||||
| #include <Grid/Lexicographic.h> |  | ||||||
| #include <Grid/Init.h> |  | ||||||
| #include <Grid/Communicator.h>  |  | ||||||
| #include <Grid/Cartesian.h>     |  | ||||||
| #include <Grid/Tensors.h>       |  | ||||||
| #include <Grid/Lattice.h>       |  | ||||||
| #include <Grid/Cshift.h>        |  | ||||||
| #include <Grid/Stencil.h>       |  | ||||||
| #include <Grid/Algorithms.h>    |  | ||||||
| #include <Grid/parallelIO/BinaryIO.h> | #include <Grid/parallelIO/BinaryIO.h> | ||||||
| #include <Grid/qcd/QCD.h> | #include <Grid/algorithms/Algorithms.h>    | ||||||
| #include <Grid/parallelIO/NerscIO.h> | NAMESPACE_CHECK(GridCore) | ||||||
| 
 |  | ||||||
| #include <Grid/FFT.h> |  | ||||||
| 
 |  | ||||||
| #include <Grid/qcd/hmc/NerscCheckpointer.h> |  | ||||||
| #include <Grid/qcd/hmc/HmcRunner.h> |  | ||||||
| 
 |  | ||||||
| 
 |  | ||||||
| 
 | 
 | ||||||
| #endif | #endif | ||||||
| @@ -2,11 +2,13 @@ | |||||||
| 
 | 
 | ||||||
|     Grid physics library, www.github.com/paboyle/Grid  |     Grid physics library, www.github.com/paboyle/Grid  | ||||||
| 
 | 
 | ||||||
|     Source file: ./lib/Lattice.h |     Source file: ./lib/Grid.h | ||||||
| 
 | 
 | ||||||
|     Copyright (C) 2015 |     Copyright (C) 2015 | ||||||
| 
 | 
 | ||||||
| Author: Peter Boyle <paboyle@ph.ed.ac.uk> | Author: Peter Boyle <paboyle@ph.ed.ac.uk> | ||||||
|  | Author: azusayamaguchi <ayamaguc@YAMAKAZE.local> | ||||||
|  | Author: paboyle <paboyle@ph.ed.ac.uk> | ||||||
| 
 | 
 | ||||||
|     This program is free software; you can redistribute it and/or modify |     This program is free software; you can redistribute it and/or modify | ||||||
|     it under the terms of the GNU General Public License as published by |     it under the terms of the GNU General Public License as published by | ||||||
| @@ -25,9 +27,17 @@ Author: Peter Boyle <paboyle@ph.ed.ac.uk> | |||||||
|     See the full license in the file "LICENSE" in the top level distribution directory |     See the full license in the file "LICENSE" in the top level distribution directory | ||||||
|     *************************************************************************************/ |     *************************************************************************************/ | ||||||
|     /*  END LEGAL */ |     /*  END LEGAL */ | ||||||
| #ifndef GRID_LATTICE_H | #ifndef GRID_QCD_CORE_H | ||||||
| #define GRID_LATTICE_H | #define GRID_QCD_CORE_H | ||||||
| 
 | 
 | ||||||
| #include <Grid/lattice/Lattice_base.h> | /////////////////////////
 | ||||||
|  | // Core Grid QCD headers
 | ||||||
|  | /////////////////////////
 | ||||||
|  | #include <Grid/GridCore.h> | ||||||
|  | #include <Grid/qcd/QCD.h> | ||||||
|  | #include <Grid/qcd/spin/Spin.h> | ||||||
|  | #include <Grid/qcd/utils/Utils.h> | ||||||
|  | #include <Grid/qcd/representations/Representations.h> | ||||||
|  | NAMESPACE_CHECK(GridQCDCore); | ||||||
| 
 | 
 | ||||||
| #endif | #endif | ||||||
							
								
								
									
										34
									
								
								Grid/GridStd.h
									
									
									
									
									
										Normal file
									
								
							
							
						
						
									
										34
									
								
								Grid/GridStd.h
									
									
									
									
									
										Normal file
									
								
							| @@ -0,0 +1,34 @@ | |||||||
|  | #ifndef GRID_STD_H | ||||||
|  | #define GRID_STD_H | ||||||
|  |  | ||||||
|  | /////////////////// | ||||||
|  | // Std C++ dependencies | ||||||
|  | /////////////////// | ||||||
|  | #include <cassert> | ||||||
|  | #include <complex> | ||||||
|  | #include <memory> | ||||||
|  | #include <vector> | ||||||
|  | #include <array> | ||||||
|  | #include <string> | ||||||
|  | #include <iostream> | ||||||
|  | #include <iomanip> | ||||||
|  | #include <random> | ||||||
|  | #include <functional> | ||||||
|  | #include <stdio.h> | ||||||
|  | #include <stdlib.h> | ||||||
|  | #include <stdio.h> | ||||||
|  | #include <signal.h> | ||||||
|  | #include <ctime> | ||||||
|  | #include <sys/time.h> | ||||||
|  | #include <chrono> | ||||||
|  | #include <zlib.h> | ||||||
|  |  | ||||||
|  | /////////////////// | ||||||
|  | // Grid config | ||||||
|  | /////////////////// | ||||||
|  | #include "Config.h" | ||||||
|  |  | ||||||
|  | #ifdef TOFU | ||||||
|  | #undef GRID_COMMS_THREADS | ||||||
|  | #endif | ||||||
|  | #endif /* GRID_STD_H */ | ||||||
							
								
								
									
										71
									
								
								Grid/Grid_Eigen_Dense.h
									
									
									
									
									
										Normal file
									
								
							
							
						
						
									
										71
									
								
								Grid/Grid_Eigen_Dense.h
									
									
									
									
									
										Normal file
									
								
							| @@ -0,0 +1,71 @@ | |||||||
|  | #include <Grid/GridCore.h> | ||||||
|  | #pragma once | ||||||
|  | // Force Eigen to use MKL if Grid has been configured with --enable-mkl | ||||||
|  | #ifdef USE_MKL | ||||||
|  | #define EIGEN_USE_MKL_ALL | ||||||
|  | #endif | ||||||
|  |  | ||||||
|  |  | ||||||
|  | #if defined __GNUC__ | ||||||
|  | #pragma GCC diagnostic push | ||||||
|  | #pragma GCC diagnostic ignored "-Wdeprecated-declarations" | ||||||
|  | #endif | ||||||
|  |  | ||||||
|  | /* NVCC save and restore compile environment*/ | ||||||
|  | #ifdef __NVCC__ | ||||||
|  | #pragma push | ||||||
|  | #pragma diag_suppress code_is_unreachable | ||||||
|  | #pragma push_macro("__CUDA_ARCH__") | ||||||
|  | #pragma push_macro("__NVCC__") | ||||||
|  | #pragma push_macro("__CUDACC__") | ||||||
|  | #undef __CUDA_ARCH__ | ||||||
|  | #undef __NVCC__ | ||||||
|  | #undef __CUDACC__ | ||||||
|  | #define __NVCC__REDEFINE__ | ||||||
|  | #endif  | ||||||
|  |  | ||||||
|  | /* SYCL save and restore compile environment*/ | ||||||
|  | #ifdef GRID_SYCL | ||||||
|  | #pragma push | ||||||
|  | #pragma push_macro("__SYCL_DEVICE_ONLY__") | ||||||
|  | #undef __SYCL_DEVICE_ONLY__ | ||||||
|  | #define EIGEN_DONT_VECTORIZE | ||||||
|  | //#undef EIGEN_USE_SYCL | ||||||
|  | #define __SYCL__REDEFINE__ | ||||||
|  | #endif | ||||||
|  |  | ||||||
|  | /* HIP save and restore compile environment*/ | ||||||
|  | #ifdef GRID_HIP | ||||||
|  | #pragma push | ||||||
|  | #pragma push_macro("__HIP_DEVICE_COMPILE__") | ||||||
|  | #endif | ||||||
|  | #define EIGEN_NO_HIP | ||||||
|  |  | ||||||
|  | #include <Grid/Eigen/Dense> | ||||||
|  | #include <Grid/Eigen/unsupported/CXX11/Tensor> | ||||||
|  |  | ||||||
|  | /* NVCC restore */ | ||||||
|  | #ifdef __NVCC__REDEFINE__ | ||||||
|  | #pragma pop_macro("__CUDACC__") | ||||||
|  | #pragma pop_macro("__NVCC__") | ||||||
|  | #pragma pop_macro("__CUDA_ARCH__") | ||||||
|  | #pragma pop | ||||||
|  | #endif | ||||||
|  |  | ||||||
|  | /*SYCL restore*/ | ||||||
|  | #ifdef __SYCL__REDEFINE__ | ||||||
|  | #pragma pop_macro("__SYCL_DEVICE_ONLY__") | ||||||
|  | #pragma pop | ||||||
|  | #endif | ||||||
|  |  | ||||||
|  | /*HIP restore*/ | ||||||
|  | #ifdef __HIP__REDEFINE__ | ||||||
|  | #pragma pop_macro("__HIP_DEVICE_COMPILE__") | ||||||
|  | #pragma pop | ||||||
|  | #endif | ||||||
|  |  | ||||||
|  | #if defined __GNUC__ | ||||||
|  | #pragma GCC diagnostic pop | ||||||
|  | #endif | ||||||
|  |  | ||||||
|  |  | ||||||
							
								
								
									
										1
									
								
								Grid/Grid_Eigen_Tensor.h
									
									
									
									
									
										Normal file
									
								
							
							
						
						
									
										1
									
								
								Grid/Grid_Eigen_Tensor.h
									
									
									
									
									
										Normal file
									
								
							| @@ -0,0 +1 @@ | |||||||
|  | #include <Grid/Grid_Eigen_Dense.h> | ||||||
							
								
								
									
										77
									
								
								Grid/Makefile.am
									
									
									
									
									
										Normal file
									
								
							
							
						
						
									
										77
									
								
								Grid/Makefile.am
									
									
									
									
									
										Normal file
									
								
							| @@ -0,0 +1,77 @@ | |||||||
|  | extra_sources= | ||||||
|  | extra_headers= | ||||||
|  |  | ||||||
|  | if BUILD_COMMS_MPI3 | ||||||
|  |   extra_sources+=communicator/Communicator_mpi3.cc | ||||||
|  |   extra_sources+=communicator/Communicator_base.cc | ||||||
|  |   extra_sources+=communicator/SharedMemoryMPI.cc | ||||||
|  |   extra_sources+=communicator/SharedMemory.cc | ||||||
|  | endif | ||||||
|  |  | ||||||
|  | if BUILD_COMMS_NONE | ||||||
|  |   extra_sources+=communicator/Communicator_none.cc | ||||||
|  |   extra_sources+=communicator/Communicator_base.cc | ||||||
|  |   extra_sources+=communicator/SharedMemoryNone.cc | ||||||
|  |   extra_sources+=communicator/SharedMemory.cc | ||||||
|  | endif | ||||||
|  |  | ||||||
|  | if BUILD_HDF5 | ||||||
|  |   extra_sources+=serialisation/Hdf5IO.cc  | ||||||
|  |   extra_headers+=serialisation/Hdf5IO.h | ||||||
|  |   extra_headers+=serialisation/Hdf5Type.h | ||||||
|  | endif | ||||||
|  |  | ||||||
|  |  | ||||||
|  | all: version-cache Version.h | ||||||
|  |  | ||||||
|  | version-cache: | ||||||
|  | 	@if [ `git status --porcelain | grep -v '??' | wc -l` -gt 0 ]; then\ | ||||||
|  | 		a="uncommited changes";\ | ||||||
|  | 	else\ | ||||||
|  | 		a="clean";\ | ||||||
|  | 	fi;\ | ||||||
|  | 	echo "`git log -n 1 --format=format:"#define GITHASH \\"%H:%d $$a\\"%n" HEAD`" > vertmp;\ | ||||||
|  | 	if [ -e version-cache ]; then\ | ||||||
|  | 		d=`diff vertmp version-cache`;\ | ||||||
|  | 		if [ "$${d}" != "" ]; then\ | ||||||
|  | 			mv vertmp version-cache;\ | ||||||
|  | 			rm -f Version.h;\ | ||||||
|  | 		fi;\ | ||||||
|  | 	else\ | ||||||
|  | 		mv vertmp version-cache;\ | ||||||
|  | 		rm -f Version.h;\ | ||||||
|  | 	fi;\ | ||||||
|  | 	rm -f vertmp | ||||||
|  |  | ||||||
|  | Version.h: version-cache | ||||||
|  | 	cp version-cache Version.h | ||||||
|  |  | ||||||
|  | .PHONY: version-cache | ||||||
|  |  | ||||||
|  | # | ||||||
|  | # Libraries | ||||||
|  | # | ||||||
|  | include Make.inc | ||||||
|  | include Eigen.inc | ||||||
|  |  | ||||||
|  | extra_sources+=$(WILS_FERMION_FILES) | ||||||
|  | extra_sources+=$(STAG_FERMION_FILES) | ||||||
|  | if BUILD_ZMOBIUS | ||||||
|  |   extra_sources+=$(ZWILS_FERMION_FILES) | ||||||
|  | endif | ||||||
|  | if BUILD_GPARITY | ||||||
|  |   extra_sources+=$(GP_FERMION_FILES) | ||||||
|  | endif | ||||||
|  | if BUILD_FERMION_REPS | ||||||
|  |   extra_sources+=$(ADJ_FERMION_FILES) | ||||||
|  |   extra_sources+=$(TWOIND_FERMION_FILES) | ||||||
|  | endif | ||||||
|  |  | ||||||
|  | lib_LIBRARIES = libGrid.a | ||||||
|  |  | ||||||
|  | CCFILES += $(extra_sources) | ||||||
|  | HFILES  += $(extra_headers) Config.h Version.h | ||||||
|  |  | ||||||
|  | libGrid_a_SOURCES              = $(CCFILES) | ||||||
|  | libGrid_adir                   = $(includedir)/Grid | ||||||
|  | nobase_dist_pkginclude_HEADERS = $(HFILES) $(eigen_files) $(eigen_unsupp_files) | ||||||
							
								
								
									
										38
									
								
								Grid/Namespace.h
									
									
									
									
									
										Normal file
									
								
							
							
						
						
									
										38
									
								
								Grid/Namespace.h
									
									
									
									
									
										Normal file
									
								
							| @@ -0,0 +1,38 @@ | |||||||
|  | /************************************************************************************* | ||||||
|  |  | ||||||
|  | Grid physics library, www.github.com/paboyle/Grid | ||||||
|  |  | ||||||
|  | Source file: ./lib/Namespace.h | ||||||
|  |  | ||||||
|  | Copyright (C) 2016 | ||||||
|  |  | ||||||
|  | Author: Peter Boyle <paboyle@ph.ed.ac.uk> | ||||||
|  |  | ||||||
|  | This program is free software; you can redistribute it and/or modify | ||||||
|  | it under the terms of the GNU General Public License as published by | ||||||
|  | the Free Software Foundation; either version 2 of the License, or | ||||||
|  | (at your option) any later version. | ||||||
|  |  | ||||||
|  | This program is distributed in the hope that it will be useful, | ||||||
|  | but WITHOUT ANY WARRANTY; without even the implied warranty of | ||||||
|  | MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the | ||||||
|  | GNU General Public License for more details. | ||||||
|  |  | ||||||
|  | You should have received a copy of the GNU General Public License along | ||||||
|  | with this program; if not, write to the Free Software Foundation, Inc., | ||||||
|  | 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. | ||||||
|  |  | ||||||
|  | See the full license in the file "LICENSE" in the top level distribution | ||||||
|  | directory | ||||||
|  | *************************************************************************************/ | ||||||
|  | /*  END LEGAL */ | ||||||
|  | #pragma once | ||||||
|  |  | ||||||
|  | #include <type_traits> | ||||||
|  | #include <cassert> | ||||||
|  |  | ||||||
|  | #define NAMESPACE_BEGIN(A) namespace A { | ||||||
|  | #define NAMESPACE_END(A)   } | ||||||
|  | #define GRID_NAMESPACE_BEGIN NAMESPACE_BEGIN(Grid) | ||||||
|  | #define GRID_NAMESPACE_END   NAMESPACE_END(Grid) | ||||||
|  | #define NAMESPACE_CHECK(x) struct namespaceTEST##x {};  static_assert(std::is_same<namespaceTEST##x, ::namespaceTEST##x>::value,"Not in :: at"  );  | ||||||
| @@ -29,46 +29,46 @@ Author: Peter Boyle <paboyle@ph.ed.ac.uk> | |||||||
| #ifndef GRID_ALGORITHMS_H | #ifndef GRID_ALGORITHMS_H | ||||||
| #define GRID_ALGORITHMS_H | #define GRID_ALGORITHMS_H | ||||||
| 
 | 
 | ||||||
|  | NAMESPACE_CHECK(algorithms); | ||||||
| #include <Grid/algorithms/SparseMatrix.h> | #include <Grid/algorithms/SparseMatrix.h> | ||||||
| #include <Grid/algorithms/LinearOperator.h> | #include <Grid/algorithms/LinearOperator.h> | ||||||
| #include <Grid/algorithms/Preconditioner.h> | #include <Grid/algorithms/Preconditioner.h> | ||||||
|  | NAMESPACE_CHECK(SparseMatrix); | ||||||
| 
 | 
 | ||||||
| #include <Grid/algorithms/approx/Zolotarev.h> | #include <Grid/algorithms/approx/Zolotarev.h> | ||||||
| #include <Grid/algorithms/approx/Chebyshev.h> | #include <Grid/algorithms/approx/Chebyshev.h> | ||||||
|  | #include <Grid/algorithms/approx/JacobiPolynomial.h> | ||||||
| #include <Grid/algorithms/approx/Remez.h> | #include <Grid/algorithms/approx/Remez.h> | ||||||
| #include <Grid/algorithms/approx/MultiShiftFunction.h> | #include <Grid/algorithms/approx/MultiShiftFunction.h> | ||||||
| 
 | #include <Grid/algorithms/approx/Forecast.h> | ||||||
|  | #include <Grid/algorithms/approx/RemezGeneral.h> | ||||||
|  | #include <Grid/algorithms/approx/ZMobius.h> | ||||||
|  | NAMESPACE_CHECK(approx); | ||||||
|  | #include <Grid/algorithms/iterative/Deflation.h> | ||||||
| #include <Grid/algorithms/iterative/ConjugateGradient.h> | #include <Grid/algorithms/iterative/ConjugateGradient.h> | ||||||
|  | NAMESPACE_CHECK(ConjGrad); | ||||||
|  | #include <Grid/algorithms/iterative/BiCGSTAB.h> | ||||||
|  | NAMESPACE_CHECK(BiCGSTAB); | ||||||
| #include <Grid/algorithms/iterative/ConjugateResidual.h> | #include <Grid/algorithms/iterative/ConjugateResidual.h> | ||||||
| #include <Grid/algorithms/iterative/NormalEquations.h> | #include <Grid/algorithms/iterative/NormalEquations.h> | ||||||
| #include <Grid/algorithms/iterative/SchurRedBlack.h> | #include <Grid/algorithms/iterative/SchurRedBlack.h> | ||||||
| 
 |  | ||||||
| #include <Grid/algorithms/iterative/ConjugateGradientMultiShift.h> | #include <Grid/algorithms/iterative/ConjugateGradientMultiShift.h> | ||||||
| #include <Grid/algorithms/iterative/ConjugateGradientMixedPrec.h> | #include <Grid/algorithms/iterative/ConjugateGradientMixedPrec.h> | ||||||
| 
 | #include <Grid/algorithms/iterative/BiCGSTABMixedPrec.h> | ||||||
| // Lanczos support
 | #include <Grid/algorithms/iterative/BlockConjugateGradient.h> | ||||||
| #include <Grid/algorithms/iterative/MatrixUtils.h> | #include <Grid/algorithms/iterative/ConjugateGradientReliableUpdate.h> | ||||||
|  | #include <Grid/algorithms/iterative/MinimalResidual.h> | ||||||
|  | #include <Grid/algorithms/iterative/GeneralisedMinimalResidual.h> | ||||||
|  | #include <Grid/algorithms/iterative/CommunicationAvoidingGeneralisedMinimalResidual.h> | ||||||
|  | #include <Grid/algorithms/iterative/FlexibleGeneralisedMinimalResidual.h> | ||||||
|  | #include <Grid/algorithms/iterative/FlexibleCommunicationAvoidingGeneralisedMinimalResidual.h> | ||||||
|  | #include <Grid/algorithms/iterative/MixedPrecisionFlexibleGeneralisedMinimalResidual.h> | ||||||
| #include <Grid/algorithms/iterative/ImplicitlyRestartedLanczos.h> | #include <Grid/algorithms/iterative/ImplicitlyRestartedLanczos.h> | ||||||
|  | #include <Grid/algorithms/iterative/PowerMethod.h> | ||||||
| 
 | 
 | ||||||
|  | NAMESPACE_CHECK(PowerMethod); | ||||||
| #include <Grid/algorithms/CoarsenedMatrix.h> | #include <Grid/algorithms/CoarsenedMatrix.h> | ||||||
| 
 | NAMESPACE_CHECK(CoarsendMatrix); | ||||||
| // Eigen/lanczos
 | #include <Grid/algorithms/FFT.h> | ||||||
| // EigCg
 |  | ||||||
| // MCR
 |  | ||||||
| // Pcg
 |  | ||||||
| // Multishift CG
 |  | ||||||
| // Hdcg
 |  | ||||||
| // GCR
 |  | ||||||
| // etc..
 |  | ||||||
| 
 |  | ||||||
| // integrator/Leapfrog
 |  | ||||||
| // integrator/Omelyan
 |  | ||||||
| // integrator/ForceGradient
 |  | ||||||
| 
 |  | ||||||
| // montecarlo/hmc
 |  | ||||||
| // montecarlo/rhmc
 |  | ||||||
| // montecarlo/metropolis
 |  | ||||||
| // etc...
 |  | ||||||
| 
 |  | ||||||
| 
 | 
 | ||||||
| #endif | #endif | ||||||
							
								
								
									
										1051
									
								
								Grid/algorithms/CoarsenedMatrix.h
									
									
									
									
									
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										1051
									
								
								Grid/algorithms/CoarsenedMatrix.h
									
									
									
									
									
										Normal file
									
								
							
										
											
												File diff suppressed because it is too large
												Load Diff
											
										
									
								
							
							
								
								
									
										296
									
								
								Grid/algorithms/FFT.h
									
									
									
									
									
										Normal file
									
								
							
							
						
						
									
										296
									
								
								Grid/algorithms/FFT.h
									
									
									
									
									
										Normal file
									
								
							| @@ -0,0 +1,296 @@ | |||||||
|  | /************************************************************************************* | ||||||
|  |  | ||||||
|  |     Grid physics library, www.github.com/paboyle/Grid  | ||||||
|  |  | ||||||
|  |     Source file: ./lib/Cshift.h | ||||||
|  |  | ||||||
|  |     Copyright (C) 2015 | ||||||
|  |  | ||||||
|  | Author: Peter Boyle <paboyle@ph.ed.ac.uk> | ||||||
|  |  | ||||||
|  |     This program is free software; you can redistribute it and/or modify | ||||||
|  |     it under the terms of the GNU General Public License as published by | ||||||
|  |     the Free Software Foundation; either version 2 of the License, or | ||||||
|  |     (at your option) any later version. | ||||||
|  |  | ||||||
|  |     This program is distributed in the hope that it will be useful, | ||||||
|  |     but WITHOUT ANY WARRANTY; without even the implied warranty of | ||||||
|  |     MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the | ||||||
|  |     GNU General Public License for more details. | ||||||
|  |  | ||||||
|  |     You should have received a copy of the GNU General Public License along | ||||||
|  |     with this program; if not, write to the Free Software Foundation, Inc., | ||||||
|  |     51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. | ||||||
|  |  | ||||||
|  |     See the full license in the file "LICENSE" in the top level distribution directory | ||||||
|  | *************************************************************************************/ | ||||||
|  | /*  END LEGAL */ | ||||||
|  | #ifndef _GRID_FFT_H_ | ||||||
|  | #define _GRID_FFT_H_ | ||||||
|  |  | ||||||
|  | #ifdef HAVE_FFTW | ||||||
|  | #ifdef USE_MKL | ||||||
|  | #include <fftw/fftw3.h> | ||||||
|  | #else | ||||||
|  | #include <fftw3.h> | ||||||
|  | #endif | ||||||
|  | #endif | ||||||
|  |  | ||||||
|  | NAMESPACE_BEGIN(Grid); | ||||||
|  |  | ||||||
|  | template<class scalar> struct FFTW { }; | ||||||
|  |  | ||||||
|  | #ifdef HAVE_FFTW	 | ||||||
|  | template<> struct FFTW<ComplexD> { | ||||||
|  | public: | ||||||
|  |  | ||||||
|  |   typedef fftw_complex FFTW_scalar; | ||||||
|  |   typedef fftw_plan    FFTW_plan; | ||||||
|  |  | ||||||
|  |   static FFTW_plan fftw_plan_many_dft(int rank, const int *n,int howmany, | ||||||
|  | 				      FFTW_scalar *in, const int *inembed,		 | ||||||
|  | 				      int istride, int idist,		 | ||||||
|  | 				      FFTW_scalar *out, const int *onembed,		 | ||||||
|  | 				      int ostride, int odist,		 | ||||||
|  | 				      int sign, unsigned flags) { | ||||||
|  |     return ::fftw_plan_many_dft(rank,n,howmany,in,inembed,istride,idist,out,onembed,ostride,odist,sign,flags); | ||||||
|  |   }	   | ||||||
|  |      | ||||||
|  |   static void fftw_flops(const FFTW_plan p,double *add, double *mul, double *fmas){ | ||||||
|  |     ::fftw_flops(p,add,mul,fmas); | ||||||
|  |   } | ||||||
|  |  | ||||||
|  |   inline static void fftw_execute_dft(const FFTW_plan p,FFTW_scalar *in,FFTW_scalar *out) { | ||||||
|  |     ::fftw_execute_dft(p,in,out); | ||||||
|  |   } | ||||||
|  |   inline static void fftw_destroy_plan(const FFTW_plan p) { | ||||||
|  |     ::fftw_destroy_plan(p); | ||||||
|  |   } | ||||||
|  | }; | ||||||
|  |  | ||||||
|  | template<> struct FFTW<ComplexF> { | ||||||
|  | public: | ||||||
|  |  | ||||||
|  |   typedef fftwf_complex FFTW_scalar; | ||||||
|  |   typedef fftwf_plan    FFTW_plan; | ||||||
|  |  | ||||||
|  |   static FFTW_plan fftw_plan_many_dft(int rank, const int *n,int howmany, | ||||||
|  | 				      FFTW_scalar *in, const int *inembed,		 | ||||||
|  | 				      int istride, int idist,		 | ||||||
|  | 				      FFTW_scalar *out, const int *onembed,		 | ||||||
|  | 				      int ostride, int odist,		 | ||||||
|  | 				      int sign, unsigned flags) { | ||||||
|  |     return ::fftwf_plan_many_dft(rank,n,howmany,in,inembed,istride,idist,out,onembed,ostride,odist,sign,flags); | ||||||
|  |   }	   | ||||||
|  |      | ||||||
|  |   static void fftw_flops(const FFTW_plan p,double *add, double *mul, double *fmas){ | ||||||
|  |     ::fftwf_flops(p,add,mul,fmas); | ||||||
|  |   } | ||||||
|  |  | ||||||
|  |   inline static void fftw_execute_dft(const FFTW_plan p,FFTW_scalar *in,FFTW_scalar *out) { | ||||||
|  |     ::fftwf_execute_dft(p,in,out); | ||||||
|  |   } | ||||||
|  |   inline static void fftw_destroy_plan(const FFTW_plan p) { | ||||||
|  |     ::fftwf_destroy_plan(p); | ||||||
|  |   } | ||||||
|  | }; | ||||||
|  |  | ||||||
|  | #endif | ||||||
|  |  | ||||||
|  | #ifndef FFTW_FORWARD | ||||||
|  | #define FFTW_FORWARD (-1) | ||||||
|  | #define FFTW_BACKWARD (+1) | ||||||
|  | #endif | ||||||
|  |  | ||||||
|  | class FFT { | ||||||
|  | private: | ||||||
|  |      | ||||||
|  |   GridCartesian *vgrid; | ||||||
|  |   GridCartesian *sgrid; | ||||||
|  |      | ||||||
|  |   int Nd; | ||||||
|  |   double flops; | ||||||
|  |   double flops_call; | ||||||
|  |   uint64_t usec; | ||||||
|  |      | ||||||
|  |   Coordinate dimensions; | ||||||
|  |   Coordinate processors; | ||||||
|  |   Coordinate processor_coor; | ||||||
|  |      | ||||||
|  | public: | ||||||
|  |      | ||||||
|  |   static const int forward=FFTW_FORWARD; | ||||||
|  |   static const int backward=FFTW_BACKWARD; | ||||||
|  |      | ||||||
|  |   double Flops(void) {return flops;} | ||||||
|  |   double MFlops(void) {return flops/usec;} | ||||||
|  |   double USec(void)   {return (double)usec;}     | ||||||
|  |  | ||||||
|  |   FFT ( GridCartesian * grid ) : | ||||||
|  |     vgrid(grid), | ||||||
|  |     Nd(grid->_ndimension), | ||||||
|  |     dimensions(grid->_fdimensions), | ||||||
|  |     processors(grid->_processors), | ||||||
|  |     processor_coor(grid->_processor_coor) | ||||||
|  |   { | ||||||
|  |     flops=0; | ||||||
|  |     usec =0; | ||||||
|  |     Coordinate layout(Nd,1); | ||||||
|  |     sgrid = new GridCartesian(dimensions,layout,processors,*grid); | ||||||
|  |   }; | ||||||
|  |      | ||||||
|  |   ~FFT ( void)  { | ||||||
|  |     delete sgrid; | ||||||
|  |   } | ||||||
|  |      | ||||||
|  |   template<class vobj> | ||||||
|  |   void FFT_dim_mask(Lattice<vobj> &result,const Lattice<vobj> &source,Coordinate mask,int sign){ | ||||||
|  |  | ||||||
|  |     conformable(result.Grid(),vgrid); | ||||||
|  |     conformable(source.Grid(),vgrid); | ||||||
|  |     Lattice<vobj> tmp(vgrid); | ||||||
|  |     tmp = source; | ||||||
|  |     for(int d=0;d<Nd;d++){ | ||||||
|  |       if( mask[d] ) { | ||||||
|  | 	FFT_dim(result,tmp,d,sign); | ||||||
|  | 	tmp=result; | ||||||
|  |       } | ||||||
|  |     } | ||||||
|  |   } | ||||||
|  |  | ||||||
|  |   template<class vobj> | ||||||
|  |   void FFT_all_dim(Lattice<vobj> &result,const Lattice<vobj> &source,int sign){ | ||||||
|  |     Coordinate mask(Nd,1); | ||||||
|  |     FFT_dim_mask(result,source,mask,sign); | ||||||
|  |   } | ||||||
|  |  | ||||||
|  |  | ||||||
|  |   template<class vobj> | ||||||
|  |   void FFT_dim(Lattice<vobj> &result,const Lattice<vobj> &source,int dim, int sign){ | ||||||
|  | #ifndef HAVE_FFTW | ||||||
|  |     assert(0); | ||||||
|  | #else | ||||||
|  |     conformable(result.Grid(),vgrid); | ||||||
|  |     conformable(source.Grid(),vgrid); | ||||||
|  |  | ||||||
|  |     int L = vgrid->_ldimensions[dim]; | ||||||
|  |     int G = vgrid->_fdimensions[dim]; | ||||||
|  |        | ||||||
|  |     Coordinate layout(Nd,1); | ||||||
|  |     Coordinate pencil_gd(vgrid->_fdimensions); | ||||||
|  |        | ||||||
|  |     pencil_gd[dim] = G*processors[dim]; | ||||||
|  |        | ||||||
|  |     // Pencil global vol LxLxGxLxL per node | ||||||
|  |     GridCartesian pencil_g(pencil_gd,layout,processors,*vgrid); | ||||||
|  |        | ||||||
|  |     // Construct pencils | ||||||
|  |     typedef typename vobj::scalar_object sobj; | ||||||
|  |     typedef typename sobj::scalar_type   scalar; | ||||||
|  |        | ||||||
|  |     Lattice<sobj> pgbuf(&pencil_g); | ||||||
|  |     autoView(pgbuf_v , pgbuf, CpuWrite); | ||||||
|  |  | ||||||
|  |     typedef typename FFTW<scalar>::FFTW_scalar FFTW_scalar; | ||||||
|  |     typedef typename FFTW<scalar>::FFTW_plan   FFTW_plan; | ||||||
|  |        | ||||||
|  |     int Ncomp = sizeof(sobj)/sizeof(scalar); | ||||||
|  |     int Nlow  = 1; | ||||||
|  |     for(int d=0;d<dim;d++){ | ||||||
|  |       Nlow*=vgrid->_ldimensions[d]; | ||||||
|  |     } | ||||||
|  |        | ||||||
|  |     int rank = 1;  /* 1d transforms */ | ||||||
|  |     int n[] = {G}; /* 1d transforms of length G */ | ||||||
|  |     int howmany = Ncomp; | ||||||
|  |     int odist,idist,istride,ostride; | ||||||
|  |     idist   = odist   = 1;          /* Distance between consecutive FT's */ | ||||||
|  |     istride = ostride = Ncomp*Nlow; /* distance between two elements in the same FT */ | ||||||
|  |     int *inembed = n, *onembed = n; | ||||||
|  |        | ||||||
|  |     scalar div; | ||||||
|  |     if ( sign == backward ) div = 1.0/G; | ||||||
|  |     else if ( sign == forward ) div = 1.0; | ||||||
|  |     else assert(0); | ||||||
|  |        | ||||||
|  |     FFTW_plan p; | ||||||
|  |     { | ||||||
|  |       FFTW_scalar *in = (FFTW_scalar *)&pgbuf_v[0]; | ||||||
|  |       FFTW_scalar *out= (FFTW_scalar *)&pgbuf_v[0]; | ||||||
|  |       p = FFTW<scalar>::fftw_plan_many_dft(rank,n,howmany, | ||||||
|  | 					   in,inembed, | ||||||
|  | 					   istride,idist, | ||||||
|  | 					   out,onembed, | ||||||
|  | 					   ostride, odist, | ||||||
|  | 					   sign,FFTW_ESTIMATE); | ||||||
|  |     } | ||||||
|  |        | ||||||
|  |     // Barrel shift and collect global pencil | ||||||
|  |     Coordinate lcoor(Nd), gcoor(Nd); | ||||||
|  |     result = source; | ||||||
|  |     int pc = processor_coor[dim]; | ||||||
|  |     for(int p=0;p<processors[dim];p++) { | ||||||
|  |       { | ||||||
|  | 	autoView(r_v,result,CpuRead); | ||||||
|  | 	autoView(p_v,pgbuf,CpuWrite); | ||||||
|  | 	thread_for(idx, sgrid->lSites(),{ | ||||||
|  |           Coordinate cbuf(Nd); | ||||||
|  |           sobj s; | ||||||
|  | 	  sgrid->LocalIndexToLocalCoor(idx,cbuf); | ||||||
|  | 	  peekLocalSite(s,r_v,cbuf); | ||||||
|  | 	  cbuf[dim]+=((pc+p) % processors[dim])*L; | ||||||
|  | 	  pokeLocalSite(s,p_v,cbuf); | ||||||
|  |         }); | ||||||
|  |       } | ||||||
|  |       if (p != processors[dim] - 1) { | ||||||
|  | 	result = Cshift(result,dim,L); | ||||||
|  |       } | ||||||
|  |     } | ||||||
|  |        | ||||||
|  |     // Loop over orthog coords | ||||||
|  |     int NN=pencil_g.lSites(); | ||||||
|  |     GridStopWatch timer; | ||||||
|  |     timer.Start(); | ||||||
|  |     thread_for( idx,NN,{ | ||||||
|  |         Coordinate cbuf(Nd); | ||||||
|  | 	pencil_g.LocalIndexToLocalCoor(idx, cbuf); | ||||||
|  | 	if ( cbuf[dim] == 0 ) {  // restricts loop to plane at lcoor[dim]==0 | ||||||
|  | 	  FFTW_scalar *in = (FFTW_scalar *)&pgbuf_v[idx]; | ||||||
|  | 	  FFTW_scalar *out= (FFTW_scalar *)&pgbuf_v[idx]; | ||||||
|  | 	  FFTW<scalar>::fftw_execute_dft(p,in,out); | ||||||
|  | 	} | ||||||
|  |     }); | ||||||
|  |     timer.Stop(); | ||||||
|  |        | ||||||
|  |     // performance counting | ||||||
|  |     double add,mul,fma; | ||||||
|  |     FFTW<scalar>::fftw_flops(p,&add,&mul,&fma); | ||||||
|  |     flops_call = add+mul+2.0*fma; | ||||||
|  |     usec += timer.useconds(); | ||||||
|  |     flops+= flops_call*NN; | ||||||
|  |        | ||||||
|  |     // writing out result | ||||||
|  |     { | ||||||
|  |       autoView(pgbuf_v,pgbuf,CpuRead); | ||||||
|  |       autoView(result_v,result,CpuWrite); | ||||||
|  |       thread_for(idx,sgrid->lSites(),{ | ||||||
|  | 	Coordinate clbuf(Nd), cgbuf(Nd); | ||||||
|  | 	sobj s; | ||||||
|  | 	sgrid->LocalIndexToLocalCoor(idx,clbuf); | ||||||
|  | 	cgbuf = clbuf; | ||||||
|  | 	cgbuf[dim] = clbuf[dim]+L*pc; | ||||||
|  | 	peekLocalSite(s,pgbuf_v,cgbuf); | ||||||
|  | 	pokeLocalSite(s,result_v,clbuf); | ||||||
|  |       }); | ||||||
|  |     } | ||||||
|  |     result = result*div; | ||||||
|  |        | ||||||
|  |     // destroying plan | ||||||
|  |     FFTW<scalar>::fftw_destroy_plan(p); | ||||||
|  | #endif | ||||||
|  |   } | ||||||
|  | }; | ||||||
|  |  | ||||||
|  | NAMESPACE_END(Grid); | ||||||
|  |  | ||||||
|  | #endif | ||||||
							
								
								
									
										639
									
								
								Grid/algorithms/LinearOperator.h
									
									
									
									
									
										Normal file
									
								
							
							
						
						
									
										639
									
								
								Grid/algorithms/LinearOperator.h
									
									
									
									
									
										Normal file
									
								
							| @@ -0,0 +1,639 @@ | |||||||
|  | /************************************************************************************* | ||||||
|  |  | ||||||
|  |     Grid physics library, www.github.com/paboyle/Grid  | ||||||
|  |  | ||||||
|  |     Source file: ./lib/algorithms/LinearOperator.h | ||||||
|  |  | ||||||
|  |     Copyright (C) 2015 | ||||||
|  |  | ||||||
|  | Author: Azusa Yamaguchi <ayamaguc@staffmail.ed.ac.uk> | ||||||
|  | Author: Peter Boyle <paboyle@ph.ed.ac.uk> | ||||||
|  |  | ||||||
|  |     This program is free software; you can redistribute it and/or modify | ||||||
|  |     it under the terms of the GNU General Public License as published by | ||||||
|  |     the Free Software Foundation; either version 2 of the License, or | ||||||
|  |     (at your option) any later version. | ||||||
|  |  | ||||||
|  |     This program is distributed in the hope that it will be useful, | ||||||
|  |     but WITHOUT ANY WARRANTY; without even the implied warranty of | ||||||
|  |     MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the | ||||||
|  |     GNU General Public License for more details. | ||||||
|  |  | ||||||
|  |     You should have received a copy of the GNU General Public License along | ||||||
|  |     with this program; if not, write to the Free Software Foundation, Inc., | ||||||
|  |     51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. | ||||||
|  |  | ||||||
|  |     See the full license in the file "LICENSE" in the top level distribution directory | ||||||
|  | *************************************************************************************/ | ||||||
|  | /*  END LEGAL */ | ||||||
|  | #pragma once  | ||||||
|  |  | ||||||
|  | NAMESPACE_BEGIN(Grid); | ||||||
|  |  | ||||||
|  | ///////////////////////////////////////////////////////////////////////////////////////////// | ||||||
|  | // LinearOperators Take a something and return a something. | ||||||
|  | ///////////////////////////////////////////////////////////////////////////////////////////// | ||||||
|  | // | ||||||
|  | // Hopefully linearity is satisfied and the AdjOp is indeed the Hermitian Conjugateugate (transpose if real): | ||||||
|  | //SBase | ||||||
|  | //   i)  F(a x + b y) = aF(x) + b F(y). | ||||||
|  | //  ii)  <x|Op|y> = <y|AdjOp|x>^\ast | ||||||
|  | // | ||||||
|  | // Would be fun to have a test linearity & Herm Conj function! | ||||||
|  | ///////////////////////////////////////////////////////////////////////////////////////////// | ||||||
|  | template<class Field> class LinearOperatorBase { | ||||||
|  | public: | ||||||
|  |   // Support for coarsening to a multigrid | ||||||
|  |   virtual void OpDiag (const Field &in, Field &out) = 0; // Abstract base | ||||||
|  |   virtual void OpDir  (const Field &in, Field &out,int dir,int disp) = 0; // Abstract base | ||||||
|  |   virtual void OpDirAll  (const Field &in, std::vector<Field> &out) = 0; // Abstract base | ||||||
|  |  | ||||||
|  |   virtual void Op     (const Field &in, Field &out) = 0; // Abstract base | ||||||
|  |   virtual void AdjOp  (const Field &in, Field &out) = 0; // Abstract base | ||||||
|  |   virtual void HermOpAndNorm(const Field &in, Field &out,RealD &n1,RealD &n2)=0; | ||||||
|  |   virtual void HermOp(const Field &in, Field &out)=0; | ||||||
|  |   virtual ~LinearOperatorBase(){}; | ||||||
|  | }; | ||||||
|  |  | ||||||
|  |  | ||||||
|  | ///////////////////////////////////////////////////////////////////////////////////////////// | ||||||
|  | // By sharing the class for Sparse Matrix across multiple operator wrappers, we can share code | ||||||
|  | // between RB and non-RB variants. Sparse matrix is like the fermion action def, and then | ||||||
|  | // the wrappers implement the specialisation of "Op" and "AdjOp" to the cases minimising | ||||||
|  | // replication of code. | ||||||
|  | // | ||||||
|  | // I'm not entirely happy with implementation; to share the Schur code between herm and non-herm | ||||||
|  | // while still having a "OpAndNorm" in the abstract base I had to implement it in both cases | ||||||
|  | // with an assert trap in the non-herm. This isn't right; there must be a better C++ way to | ||||||
|  | // do it, but I fear it required multiple inheritance and mixed in abstract base classes | ||||||
|  | ///////////////////////////////////////////////////////////////////////////////////////////// | ||||||
|  |  | ||||||
|  | //////////////////////////////////////////////////////////////////// | ||||||
|  | // Construct herm op from non-herm matrix | ||||||
|  | //////////////////////////////////////////////////////////////////// | ||||||
|  | template<class Matrix,class Field> | ||||||
|  | class MdagMLinearOperator : public LinearOperatorBase<Field> { | ||||||
|  |   Matrix &_Mat; | ||||||
|  | public: | ||||||
|  |   MdagMLinearOperator(Matrix &Mat): _Mat(Mat){}; | ||||||
|  |  | ||||||
|  |   // Support for coarsening to a multigrid | ||||||
|  |   void OpDiag (const Field &in, Field &out) { | ||||||
|  |     _Mat.Mdiag(in,out); | ||||||
|  |   } | ||||||
|  |   void OpDir  (const Field &in, Field &out,int dir,int disp) { | ||||||
|  |     _Mat.Mdir(in,out,dir,disp); | ||||||
|  |   } | ||||||
|  |   void OpDirAll  (const Field &in, std::vector<Field> &out){ | ||||||
|  |     _Mat.MdirAll(in,out); | ||||||
|  |   }; | ||||||
|  |   void Op     (const Field &in, Field &out){ | ||||||
|  |     _Mat.M(in,out); | ||||||
|  |   } | ||||||
|  |   void AdjOp     (const Field &in, Field &out){ | ||||||
|  |     _Mat.Mdag(in,out); | ||||||
|  |   } | ||||||
|  |   void HermOpAndNorm(const Field &in, Field &out,RealD &n1,RealD &n2){ | ||||||
|  |     _Mat.MdagM(in,out); | ||||||
|  |     ComplexD dot = innerProduct(in,out); | ||||||
|  |     n1=real(dot); | ||||||
|  |     n2=norm2(out); | ||||||
|  |   } | ||||||
|  |   void HermOp(const Field &in, Field &out){ | ||||||
|  |     _Mat.MdagM(in,out); | ||||||
|  |   } | ||||||
|  | }; | ||||||
|  |  | ||||||
|  | //////////////////////////////////////////////////////////////////// | ||||||
|  | // Construct herm op and shift it for mgrid smoother | ||||||
|  | //////////////////////////////////////////////////////////////////// | ||||||
|  | template<class Matrix,class Field> | ||||||
|  | class ShiftedMdagMLinearOperator : public LinearOperatorBase<Field> { | ||||||
|  |   Matrix &_Mat; | ||||||
|  |   RealD _shift; | ||||||
|  | public: | ||||||
|  |   ShiftedMdagMLinearOperator(Matrix &Mat,RealD shift): _Mat(Mat), _shift(shift){}; | ||||||
|  |   // Support for coarsening to a multigrid | ||||||
|  |   void OpDiag (const Field &in, Field &out) { | ||||||
|  |     _Mat.Mdiag(in,out); | ||||||
|  |     assert(0); | ||||||
|  |   } | ||||||
|  |   void OpDir  (const Field &in, Field &out,int dir,int disp) { | ||||||
|  |     _Mat.Mdir(in,out,dir,disp); | ||||||
|  |     assert(0); | ||||||
|  |   } | ||||||
|  |   void OpDirAll  (const Field &in, std::vector<Field> &out){ | ||||||
|  |     assert(0); | ||||||
|  |   }; | ||||||
|  |   void Op     (const Field &in, Field &out){ | ||||||
|  |     _Mat.M(in,out); | ||||||
|  |     assert(0); | ||||||
|  |   } | ||||||
|  |   void AdjOp     (const Field &in, Field &out){ | ||||||
|  |     _Mat.Mdag(in,out); | ||||||
|  |     assert(0); | ||||||
|  |   } | ||||||
|  |   void HermOpAndNorm(const Field &in, Field &out,RealD &n1,RealD &n2){ | ||||||
|  |     HermOp(in,out); | ||||||
|  |     ComplexD dot = innerProduct(in,out); | ||||||
|  |     n1=real(dot); | ||||||
|  |     n2=norm2(out); | ||||||
|  |   } | ||||||
|  |   void HermOp(const Field &in, Field &out){ | ||||||
|  |     _Mat.MdagM(in,out); | ||||||
|  |     out = out + _shift*in; | ||||||
|  |   } | ||||||
|  | }; | ||||||
|  |  | ||||||
|  | //////////////////////////////////////////////////////////////////// | ||||||
|  | // Wrap an already herm matrix | ||||||
|  | //////////////////////////////////////////////////////////////////// | ||||||
|  | template<class Matrix,class Field> | ||||||
|  | class HermitianLinearOperator : public LinearOperatorBase<Field> { | ||||||
|  |   Matrix &_Mat; | ||||||
|  | public: | ||||||
|  |   HermitianLinearOperator(Matrix &Mat): _Mat(Mat){}; | ||||||
|  |   // Support for coarsening to a multigrid | ||||||
|  |   void OpDiag (const Field &in, Field &out) { | ||||||
|  |     _Mat.Mdiag(in,out); | ||||||
|  |   } | ||||||
|  |   void OpDir  (const Field &in, Field &out,int dir,int disp) { | ||||||
|  |     _Mat.Mdir(in,out,dir,disp); | ||||||
|  |   } | ||||||
|  |   void OpDirAll  (const Field &in, std::vector<Field> &out){ | ||||||
|  |     _Mat.MdirAll(in,out); | ||||||
|  |   }; | ||||||
|  |   void Op     (const Field &in, Field &out){ | ||||||
|  |     _Mat.M(in,out); | ||||||
|  |   } | ||||||
|  |   void AdjOp     (const Field &in, Field &out){ | ||||||
|  |     _Mat.M(in,out); | ||||||
|  |   } | ||||||
|  |   void HermOpAndNorm(const Field &in, Field &out,RealD &n1,RealD &n2){ | ||||||
|  |     HermOp(in,out); | ||||||
|  |     ComplexD dot= innerProduct(in,out); n1=real(dot); | ||||||
|  |     n2=norm2(out); | ||||||
|  |   } | ||||||
|  |   void HermOp(const Field &in, Field &out){ | ||||||
|  |     _Mat.M(in,out); | ||||||
|  |   } | ||||||
|  | }; | ||||||
|  |  | ||||||
|  | template<class Matrix,class Field> | ||||||
|  | class NonHermitianLinearOperator : public LinearOperatorBase<Field> { | ||||||
|  |   Matrix &_Mat; | ||||||
|  | public: | ||||||
|  |   NonHermitianLinearOperator(Matrix &Mat): _Mat(Mat){}; | ||||||
|  |   // Support for coarsening to a multigrid | ||||||
|  |   void OpDiag (const Field &in, Field &out) { | ||||||
|  |     _Mat.Mdiag(in,out); | ||||||
|  |   } | ||||||
|  |   void OpDir  (const Field &in, Field &out,int dir,int disp) { | ||||||
|  |     _Mat.Mdir(in,out,dir,disp); | ||||||
|  |   } | ||||||
|  |   void OpDirAll  (const Field &in, std::vector<Field> &out){ | ||||||
|  |     _Mat.MdirAll(in,out); | ||||||
|  |   }; | ||||||
|  |   void Op     (const Field &in, Field &out){ | ||||||
|  |     _Mat.M(in,out); | ||||||
|  |   } | ||||||
|  |   void AdjOp     (const Field &in, Field &out){ | ||||||
|  |     _Mat.Mdag(in,out); | ||||||
|  |   } | ||||||
|  |   void HermOpAndNorm(const Field &in, Field &out,RealD &n1,RealD &n2){ | ||||||
|  |     assert(0); | ||||||
|  |   } | ||||||
|  |   void HermOp(const Field &in, Field &out){ | ||||||
|  |     assert(0); | ||||||
|  |   } | ||||||
|  | }; | ||||||
|  |  | ||||||
|  | ////////////////////////////////////////////////////////// | ||||||
|  | // Even Odd Schur decomp operators; there are several | ||||||
|  | // ways to introduce the even odd checkerboarding | ||||||
|  | ////////////////////////////////////////////////////////// | ||||||
|  |  | ||||||
|  | template<class Field> | ||||||
|  | class SchurOperatorBase :  public LinearOperatorBase<Field> { | ||||||
|  |  public: | ||||||
|  |   virtual  void Mpc      (const Field &in, Field &out) =0; | ||||||
|  |   virtual  void MpcDag   (const Field &in, Field &out) =0; | ||||||
|  |   virtual  void MpcDagMpc(const Field &in, Field &out) { | ||||||
|  |     Field tmp(in.Grid()); | ||||||
|  |     tmp.Checkerboard() = in.Checkerboard(); | ||||||
|  |     Mpc(in,tmp); | ||||||
|  |     MpcDag(tmp,out); | ||||||
|  |   } | ||||||
|  |   virtual void HermOpAndNorm(const Field &in, Field &out,RealD &n1,RealD &n2){ | ||||||
|  |     out.Checkerboard() = in.Checkerboard(); | ||||||
|  |     MpcDagMpc(in,out); | ||||||
|  |     ComplexD dot= innerProduct(in,out);  | ||||||
|  |     n1=real(dot); | ||||||
|  |     n2=norm2(out); | ||||||
|  |   } | ||||||
|  |   virtual void HermOp(const Field &in, Field &out){ | ||||||
|  |     out.Checkerboard() = in.Checkerboard(); | ||||||
|  |     MpcDagMpc(in,out); | ||||||
|  |   } | ||||||
|  |   void Op     (const Field &in, Field &out){ | ||||||
|  |     Mpc(in,out); | ||||||
|  |   } | ||||||
|  |   void AdjOp     (const Field &in, Field &out){  | ||||||
|  |     MpcDag(in,out); | ||||||
|  |   } | ||||||
|  |   // Support for coarsening to a multigrid | ||||||
|  |   void OpDiag (const Field &in, Field &out) { | ||||||
|  |     assert(0); // must coarsen the unpreconditioned system | ||||||
|  |   } | ||||||
|  |   void OpDir  (const Field &in, Field &out,int dir,int disp) { | ||||||
|  |     assert(0); | ||||||
|  |   } | ||||||
|  |   void OpDirAll  (const Field &in, std::vector<Field> &out){ | ||||||
|  |     assert(0); | ||||||
|  |   }; | ||||||
|  | }; | ||||||
|  | template<class Matrix,class Field> | ||||||
|  |   class SchurDiagMooeeOperator :  public SchurOperatorBase<Field> { | ||||||
|  |  public: | ||||||
|  |     Matrix &_Mat; | ||||||
|  |     SchurDiagMooeeOperator (Matrix &Mat): _Mat(Mat){}; | ||||||
|  |     virtual  void Mpc      (const Field &in, Field &out) { | ||||||
|  |       Field tmp(in.Grid()); | ||||||
|  |       tmp.Checkerboard() = !in.Checkerboard(); | ||||||
|  |        | ||||||
|  |       _Mat.Meooe(in,tmp); | ||||||
|  |       _Mat.MooeeInv(tmp,out); | ||||||
|  |       _Mat.Meooe(out,tmp); | ||||||
|  |       _Mat.Mooee(in,out); | ||||||
|  |       axpy(out,-1.0,tmp,out); | ||||||
|  |     } | ||||||
|  |     virtual void MpcDag   (const Field &in, Field &out){ | ||||||
|  |       Field tmp(in.Grid()); | ||||||
|  | 	 | ||||||
|  |       _Mat.MeooeDag(in,tmp); | ||||||
|  |       _Mat.MooeeInvDag(tmp,out); | ||||||
|  |       _Mat.MeooeDag(out,tmp); | ||||||
|  |       _Mat.MooeeDag(in,out); | ||||||
|  |       axpy(out,-1.0,tmp,out); | ||||||
|  |     } | ||||||
|  | }; | ||||||
|  | template<class Matrix,class Field> | ||||||
|  |   class SchurDiagOneOperator :  public SchurOperatorBase<Field> { | ||||||
|  |  protected: | ||||||
|  |     Matrix &_Mat; | ||||||
|  |  public: | ||||||
|  |     SchurDiagOneOperator (Matrix &Mat): _Mat(Mat){}; | ||||||
|  |      | ||||||
|  |     virtual void Mpc      (const Field &in, Field &out) { | ||||||
|  |       Field tmp(in.Grid()); | ||||||
|  |  | ||||||
|  |       _Mat.Meooe(in,out); | ||||||
|  |       _Mat.MooeeInv(out,tmp); | ||||||
|  |       _Mat.Meooe(tmp,out); | ||||||
|  |       _Mat.MooeeInv(out,tmp); | ||||||
|  |       axpy(out,-1.0,tmp,in); | ||||||
|  |     } | ||||||
|  |     virtual void MpcDag   (const Field &in, Field &out){ | ||||||
|  |       Field tmp(in.Grid()); | ||||||
|  |        | ||||||
|  |       _Mat.MooeeInvDag(in,out); | ||||||
|  |       _Mat.MeooeDag(out,tmp); | ||||||
|  |       _Mat.MooeeInvDag(tmp,out); | ||||||
|  |       _Mat.MeooeDag(out,tmp); | ||||||
|  |       axpy(out,-1.0,tmp,in); | ||||||
|  |     } | ||||||
|  | }; | ||||||
|  | template<class Matrix,class Field> | ||||||
|  |   class SchurDiagTwoOperator :  public SchurOperatorBase<Field> { | ||||||
|  |  protected: | ||||||
|  |     Matrix &_Mat; | ||||||
|  |  public: | ||||||
|  |     SchurDiagTwoOperator (Matrix &Mat): _Mat(Mat){}; | ||||||
|  |      | ||||||
|  |     virtual void Mpc      (const Field &in, Field &out) { | ||||||
|  |       Field tmp(in.Grid()); | ||||||
|  |        | ||||||
|  |       _Mat.MooeeInv(in,out); | ||||||
|  |       _Mat.Meooe(out,tmp); | ||||||
|  |       _Mat.MooeeInv(tmp,out); | ||||||
|  |       _Mat.Meooe(out,tmp); | ||||||
|  |        | ||||||
|  |       axpy(out,-1.0,tmp,in); | ||||||
|  |     } | ||||||
|  |     virtual  void MpcDag   (const Field &in, Field &out){ | ||||||
|  |       Field tmp(in.Grid()); | ||||||
|  |  | ||||||
|  |       _Mat.MeooeDag(in,out); | ||||||
|  |       _Mat.MooeeInvDag(out,tmp); | ||||||
|  |       _Mat.MeooeDag(tmp,out); | ||||||
|  |       _Mat.MooeeInvDag(out,tmp); | ||||||
|  |  | ||||||
|  |       axpy(out,-1.0,tmp,in); | ||||||
|  |     } | ||||||
|  | }; | ||||||
|  |  | ||||||
|  | template<class Field> | ||||||
|  | class NonHermitianSchurOperatorBase :  public LinearOperatorBase<Field>  | ||||||
|  | { | ||||||
|  |  public: | ||||||
|  |   virtual void  Mpc      (const Field& in, Field& out) = 0; | ||||||
|  |   virtual void  MpcDag   (const Field& in, Field& out) = 0; | ||||||
|  |   virtual void  MpcDagMpc(const Field& in, Field& out) { | ||||||
|  |     Field tmp(in.Grid()); | ||||||
|  |     tmp.Checkerboard() = in.Checkerboard(); | ||||||
|  |     Mpc(in,tmp); | ||||||
|  |     MpcDag(tmp,out); | ||||||
|  |   } | ||||||
|  |   virtual void HermOpAndNorm(const Field& in, Field& out, RealD& n1, RealD& n2) { | ||||||
|  |     assert(0); | ||||||
|  |   } | ||||||
|  |   virtual void HermOp(const Field& in, Field& out) { | ||||||
|  |     assert(0); | ||||||
|  |   } | ||||||
|  |   void Op(const Field& in, Field& out) { | ||||||
|  |     Mpc(in, out); | ||||||
|  |   } | ||||||
|  |   void AdjOp(const Field& in, Field& out) {  | ||||||
|  |     MpcDag(in, out); | ||||||
|  |   } | ||||||
|  |   // Support for coarsening to a multigrid | ||||||
|  |   void OpDiag(const Field& in, Field& out) { | ||||||
|  |     assert(0); // must coarsen the unpreconditioned system | ||||||
|  |   } | ||||||
|  |   void OpDir(const Field& in, Field& out, int dir, int disp) { | ||||||
|  |     assert(0); | ||||||
|  |   } | ||||||
|  |   void OpDirAll(const Field& in, std::vector<Field>& out){ | ||||||
|  |     assert(0); | ||||||
|  |   }; | ||||||
|  | }; | ||||||
|  |  | ||||||
|  | template<class Matrix, class Field> | ||||||
|  | class NonHermitianSchurDiagMooeeOperator :  public NonHermitianSchurOperatorBase<Field>  | ||||||
|  | { | ||||||
|  |  public: | ||||||
|  |   Matrix& _Mat; | ||||||
|  |  NonHermitianSchurDiagMooeeOperator(Matrix& Mat): _Mat(Mat){}; | ||||||
|  |   virtual void Mpc(const Field& in, Field& out) { | ||||||
|  |     Field tmp(in.Grid()); | ||||||
|  |     tmp.Checkerboard() = !in.Checkerboard(); | ||||||
|  |      | ||||||
|  |     _Mat.Meooe(in, tmp); | ||||||
|  |     _Mat.MooeeInv(tmp, out); | ||||||
|  |     _Mat.Meooe(out, tmp); | ||||||
|  |      | ||||||
|  |     _Mat.Mooee(in, out); | ||||||
|  |      | ||||||
|  |     axpy(out, -1.0, tmp, out); | ||||||
|  |   } | ||||||
|  |   virtual void MpcDag(const Field& in, Field& out) { | ||||||
|  |     Field tmp(in.Grid()); | ||||||
|  |      | ||||||
|  |     _Mat.MeooeDag(in, tmp); | ||||||
|  |     _Mat.MooeeInvDag(tmp, out); | ||||||
|  |     _Mat.MeooeDag(out, tmp); | ||||||
|  | 	   | ||||||
|  |     _Mat.MooeeDag(in, out); | ||||||
|  |      | ||||||
|  |     axpy(out, -1.0, tmp, out); | ||||||
|  |   } | ||||||
|  | }; | ||||||
|  |      | ||||||
|  | template<class Matrix,class Field> | ||||||
|  | class NonHermitianSchurDiagOneOperator : public NonHermitianSchurOperatorBase<Field>  | ||||||
|  | { | ||||||
|  |  protected: | ||||||
|  |   Matrix &_Mat; | ||||||
|  |    | ||||||
|  |  public: | ||||||
|  |   NonHermitianSchurDiagOneOperator (Matrix& Mat): _Mat(Mat){}; | ||||||
|  |   virtual void Mpc(const Field& in, Field& out) { | ||||||
|  |     Field tmp(in.Grid()); | ||||||
|  | 	   | ||||||
|  |     _Mat.Meooe(in, out); | ||||||
|  |     _Mat.MooeeInv(out, tmp); | ||||||
|  |     _Mat.Meooe(tmp, out); | ||||||
|  |     _Mat.MooeeInv(out, tmp); | ||||||
|  |  | ||||||
|  |     axpy(out, -1.0, tmp, in); | ||||||
|  |   } | ||||||
|  |   virtual void MpcDag(const Field& in, Field& out) { | ||||||
|  |     Field tmp(in.Grid()); | ||||||
|  |      | ||||||
|  |     _Mat.MooeeInvDag(in, out); | ||||||
|  |     _Mat.MeooeDag(out, tmp); | ||||||
|  |     _Mat.MooeeInvDag(tmp, out); | ||||||
|  |     _Mat.MeooeDag(out, tmp); | ||||||
|  |      | ||||||
|  |     axpy(out, -1.0, tmp, in); | ||||||
|  |   } | ||||||
|  | }; | ||||||
|  |  | ||||||
|  | template<class Matrix, class Field> | ||||||
|  | class NonHermitianSchurDiagTwoOperator : public NonHermitianSchurOperatorBase<Field>  | ||||||
|  | { | ||||||
|  |  protected: | ||||||
|  |   Matrix& _Mat; | ||||||
|  |    | ||||||
|  |  public: | ||||||
|  |  NonHermitianSchurDiagTwoOperator(Matrix& Mat): _Mat(Mat){}; | ||||||
|  |  | ||||||
|  |   virtual void Mpc(const Field& in, Field& out) { | ||||||
|  |     Field tmp(in.Grid()); | ||||||
|  |      | ||||||
|  |     _Mat.MooeeInv(in, out); | ||||||
|  |     _Mat.Meooe(out, tmp); | ||||||
|  |     _Mat.MooeeInv(tmp, out); | ||||||
|  |     _Mat.Meooe(out, tmp); | ||||||
|  |  | ||||||
|  |     axpy(out, -1.0, tmp, in); | ||||||
|  |   } | ||||||
|  |   virtual void MpcDag(const Field& in, Field& out) { | ||||||
|  |     Field tmp(in.Grid()); | ||||||
|  |      | ||||||
|  |     _Mat.MeooeDag(in, out); | ||||||
|  |     _Mat.MooeeInvDag(out, tmp); | ||||||
|  |     _Mat.MeooeDag(tmp, out); | ||||||
|  |     _Mat.MooeeInvDag(out, tmp); | ||||||
|  |  | ||||||
|  |     axpy(out, -1.0, tmp, in); | ||||||
|  |   } | ||||||
|  | }; | ||||||
|  |  | ||||||
|  | /////////////////////////////////////////////////////////////////////////////////////////////////// | ||||||
|  | // Left  handed Moo^-1 ; (Moo - Moe Mee^-1 Meo) psi = eta  -->  ( 1 - Moo^-1 Moe Mee^-1 Meo ) psi = Moo^-1 eta | ||||||
|  | // Right handed Moo^-1 ; (Moo - Moe Mee^-1 Meo) Moo^-1 Moo psi = eta  -->  ( 1 - Moe Mee^-1 Meo Moo^-1) phi=eta ; psi = Moo^-1 phi | ||||||
|  | /////////////////////////////////////////////////////////////////////////////////////////////////// | ||||||
|  | template<class Matrix,class Field> using SchurDiagOneRH = SchurDiagTwoOperator<Matrix,Field> ; | ||||||
|  | template<class Matrix,class Field> using SchurDiagOneLH = SchurDiagOneOperator<Matrix,Field> ; | ||||||
|  | /////////////////////////////////////////////////////////////////////////////////////////////////// | ||||||
|  | //  Staggered use | ||||||
|  | /////////////////////////////////////////////////////////////////////////////////////////////////// | ||||||
|  | template<class Matrix,class Field> | ||||||
|  | class SchurStaggeredOperator :  public SchurOperatorBase<Field> { | ||||||
|  |  protected: | ||||||
|  |   Matrix &_Mat; | ||||||
|  |   Field tmp; | ||||||
|  |   RealD mass; | ||||||
|  |  public: | ||||||
|  |   SchurStaggeredOperator (Matrix &Mat): _Mat(Mat), tmp(_Mat.RedBlackGrid())  | ||||||
|  |   {  | ||||||
|  |     assert( _Mat.isTrivialEE() ); | ||||||
|  |     mass = _Mat.Mass(); | ||||||
|  |   } | ||||||
|  |   virtual void HermOpAndNorm(const Field &in, Field &out,RealD &n1,RealD &n2){ | ||||||
|  |     Mpc(in,out); | ||||||
|  |     ComplexD dot= innerProduct(in,out); | ||||||
|  |     n1 = real(dot); | ||||||
|  |     n2 =0.0; | ||||||
|  |   } | ||||||
|  |   virtual void HermOp(const Field &in, Field &out){ | ||||||
|  |     Mpc(in,out); | ||||||
|  |     //    _Mat.Meooe(in,out); | ||||||
|  |     //    _Mat.Meooe(out,tmp); | ||||||
|  |     //    axpby(out,-1.0,mass*mass,tmp,in); | ||||||
|  |   } | ||||||
|  |   virtual  void Mpc      (const Field &in, Field &out)  | ||||||
|  |   { | ||||||
|  |     Field tmp(in.Grid()); | ||||||
|  |     Field tmp2(in.Grid()); | ||||||
|  | 	 | ||||||
|  |     //    _Mat.Mooee(in,out); | ||||||
|  |     //    _Mat.Mooee(out,tmp); | ||||||
|  |  | ||||||
|  |     _Mat.Meooe(in,out); | ||||||
|  |     _Mat.Meooe(out,tmp); | ||||||
|  |     axpby(out,-1.0,mass*mass,tmp,in); | ||||||
|  |   } | ||||||
|  |   virtual  void MpcDag   (const Field &in, Field &out){ | ||||||
|  |     Mpc(in,out); | ||||||
|  |   } | ||||||
|  |   virtual void MpcDagMpc(const Field &in, Field &out) { | ||||||
|  |     assert(0);// Never need with staggered | ||||||
|  |   } | ||||||
|  | }; | ||||||
|  | template<class Matrix,class Field> using SchurStagOperator = SchurStaggeredOperator<Matrix,Field>; | ||||||
|  |  | ||||||
|  | ///////////////////////////////////////////////////////////// | ||||||
|  | // Base classes for functions of operators | ||||||
|  | ///////////////////////////////////////////////////////////// | ||||||
|  | template<class Field> class OperatorFunction { | ||||||
|  | public: | ||||||
|  |   virtual void operator() (LinearOperatorBase<Field> &Linop, const Field &in, Field &out) = 0; | ||||||
|  |   virtual void operator() (LinearOperatorBase<Field> &Linop, const std::vector<Field> &in,std::vector<Field> &out) { | ||||||
|  |     assert(in.size()==out.size()); | ||||||
|  |     for(int k=0;k<in.size();k++){ | ||||||
|  |       (*this)(Linop,in[k],out[k]); | ||||||
|  |     } | ||||||
|  |   }; | ||||||
|  | }; | ||||||
|  |  | ||||||
|  | template<class Field> class LinearFunction { | ||||||
|  | public: | ||||||
|  |   virtual void operator() (const Field &in, Field &out) = 0; | ||||||
|  |  | ||||||
|  |   virtual void operator() (const std::vector<Field> &in, std::vector<Field> &out) | ||||||
|  |   { | ||||||
|  |     assert(in.size() == out.size()); | ||||||
|  |  | ||||||
|  |     for (unsigned int i = 0; i < in.size(); ++i) | ||||||
|  |     { | ||||||
|  |       (*this)(in[i], out[i]); | ||||||
|  |     } | ||||||
|  |   } | ||||||
|  | }; | ||||||
|  |  | ||||||
|  | template<class Field> class IdentityLinearFunction : public LinearFunction<Field> { | ||||||
|  | public: | ||||||
|  |   void operator() (const Field &in, Field &out){ | ||||||
|  |     out = in; | ||||||
|  |   }; | ||||||
|  | }; | ||||||
|  |  | ||||||
|  |  | ||||||
|  | ///////////////////////////////////////////////////////////// | ||||||
|  | // Base classes for Multishift solvers for operators | ||||||
|  | ///////////////////////////////////////////////////////////// | ||||||
|  | template<class Field> class OperatorMultiFunction { | ||||||
|  | public: | ||||||
|  |   virtual void operator() (LinearOperatorBase<Field> &Linop, const Field &in, std::vector<Field> &out) = 0; | ||||||
|  | }; | ||||||
|  |  | ||||||
|  | // FIXME : To think about | ||||||
|  |  | ||||||
|  | // Chroma functionality list defining LinearOperator | ||||||
|  | /* | ||||||
|  |   virtual void operator() (T& chi, const T& psi, enum PlusMinus isign) const = 0; | ||||||
|  |   virtual void operator() (T& chi, const T& psi, enum PlusMinus isign, Real epsilon) const | ||||||
|  |   virtual const Subset& subset() const = 0; | ||||||
|  |   virtual unsigned long nFlops() const { return 0; } | ||||||
|  |   virtual void deriv(P& ds_u, const T& chi, const T& psi, enum PlusMinus isign) const | ||||||
|  |   class UnprecLinearOperator : public DiffLinearOperator<T,P,Q> | ||||||
|  |   const Subset& subset() const {return all;} | ||||||
|  |   }; | ||||||
|  | */ | ||||||
|  |  | ||||||
|  | //////////////////////////////////////////////////////////////////////////////////////////// | ||||||
|  | // Hermitian operator Linear function and operator function | ||||||
|  | //////////////////////////////////////////////////////////////////////////////////////////// | ||||||
|  | template<class Field> | ||||||
|  | class HermOpOperatorFunction : public OperatorFunction<Field> { | ||||||
|  |   void operator() (LinearOperatorBase<Field> &Linop, const Field &in, Field &out) { | ||||||
|  |     Linop.HermOp(in,out); | ||||||
|  |   }; | ||||||
|  | }; | ||||||
|  |  | ||||||
|  | template<typename Field> | ||||||
|  | class PlainHermOp : public LinearFunction<Field> { | ||||||
|  | public: | ||||||
|  |   using LinearFunction<Field>::operator(); | ||||||
|  |   LinearOperatorBase<Field> &_Linop; | ||||||
|  |        | ||||||
|  |   PlainHermOp(LinearOperatorBase<Field>& linop) : _Linop(linop)  | ||||||
|  |   {} | ||||||
|  |        | ||||||
|  |   void operator()(const Field& in, Field& out) { | ||||||
|  |     _Linop.HermOp(in,out); | ||||||
|  |   } | ||||||
|  | }; | ||||||
|  |  | ||||||
|  | template<typename Field> | ||||||
|  | class FunctionHermOp : public LinearFunction<Field> { | ||||||
|  | public: | ||||||
|  |   using LinearFunction<Field>::operator();  | ||||||
|  |   OperatorFunction<Field>   & _poly; | ||||||
|  |   LinearOperatorBase<Field> &_Linop; | ||||||
|  |        | ||||||
|  |   FunctionHermOp(OperatorFunction<Field> & poly,LinearOperatorBase<Field>& linop)  | ||||||
|  |     : _poly(poly), _Linop(linop) {}; | ||||||
|  |        | ||||||
|  |   void operator()(const Field& in, Field& out) { | ||||||
|  |     _poly(_Linop,in,out); | ||||||
|  |   } | ||||||
|  | }; | ||||||
|  |  | ||||||
|  | template<class Field> | ||||||
|  | class Polynomial : public OperatorFunction<Field> { | ||||||
|  | private: | ||||||
|  |   std::vector<RealD> Coeffs; | ||||||
|  | public: | ||||||
|  |   using OperatorFunction<Field>::operator(); | ||||||
|  |  | ||||||
|  |   Polynomial(std::vector<RealD> &_Coeffs) : Coeffs(_Coeffs) { }; | ||||||
|  |  | ||||||
|  |   // Implement the required interface | ||||||
|  |   void operator() (LinearOperatorBase<Field> &Linop, const Field &in, Field &out) { | ||||||
|  |  | ||||||
|  |     Field AtoN(in.Grid()); | ||||||
|  |     Field Mtmp(in.Grid()); | ||||||
|  |     AtoN = in; | ||||||
|  |     out = AtoN*Coeffs[0]; | ||||||
|  |     for(int n=1;n<Coeffs.size();n++){ | ||||||
|  |       Mtmp = AtoN; | ||||||
|  |       Linop.HermOp(Mtmp,AtoN); | ||||||
|  |       out=out+AtoN*Coeffs[n]; | ||||||
|  |     } | ||||||
|  |   }; | ||||||
|  | }; | ||||||
|  |  | ||||||
|  | NAMESPACE_END(Grid); | ||||||
| @@ -1,4 +1,4 @@ | |||||||
|     /*************************************************************************************
 | /*************************************************************************************
 | ||||||
| 
 | 
 | ||||||
|     Grid physics library, www.github.com/paboyle/Grid  |     Grid physics library, www.github.com/paboyle/Grid  | ||||||
| 
 | 
 | ||||||
| @@ -23,24 +23,30 @@ Author: Azusa Yamaguchi <ayamaguc@staffmail.ed.ac.uk> | |||||||
|     51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. |     51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. | ||||||
| 
 | 
 | ||||||
|     See the full license in the file "LICENSE" in the top level distribution directory |     See the full license in the file "LICENSE" in the top level distribution directory | ||||||
|     *************************************************************************************/ | *************************************************************************************/ | ||||||
|     /*  END LEGAL */ | /*  END LEGAL */ | ||||||
| #ifndef GRID_PRECONDITIONER_H | #ifndef GRID_PRECONDITIONER_H | ||||||
| #define GRID_PRECONDITIONER_H | #define GRID_PRECONDITIONER_H | ||||||
| 
 | 
 | ||||||
| namespace Grid { | NAMESPACE_BEGIN(Grid); | ||||||
| 
 | 
 | ||||||
|   template<class Field> class Preconditioner :  public LinearFunction<Field> {  | template<class Field> using Preconditioner =  LinearFunction<Field> ; | ||||||
|  | 
 | ||||||
|  | /*
 | ||||||
|  | template<class Field> class Preconditioner :  public LinearFunction<Field> { | ||||||
|  |   using LinearFunction<Field>::operator(); | ||||||
|   virtual void operator()(const Field &src, Field & psi)=0; |   virtual void operator()(const Field &src, Field & psi)=0; | ||||||
|   }; | }; | ||||||
|  | */ | ||||||
| 
 | 
 | ||||||
|   template<class Field> class TrivialPrecon :  public Preconditioner<Field> {  | template<class Field> class TrivialPrecon :  public Preconditioner<Field> {  | ||||||
|   public: | public: | ||||||
|     void operator()(const Field &src, Field & psi){ |   using Preconditioner<Field>::operator(); | ||||||
|  |   virtual void operator()(const Field &src, Field & psi){ | ||||||
|     psi = src; |     psi = src; | ||||||
|   } |   } | ||||||
|   TrivialPrecon(void){}; |   TrivialPrecon(void){}; | ||||||
|   }; | }; | ||||||
| 
 | 
 | ||||||
| } | NAMESPACE_END(Grid); | ||||||
| #endif | #endif | ||||||
							
								
								
									
										81
									
								
								Grid/algorithms/SparseMatrix.h
									
									
									
									
									
										Normal file
									
								
							
							
						
						
									
										81
									
								
								Grid/algorithms/SparseMatrix.h
									
									
									
									
									
										Normal file
									
								
							| @@ -0,0 +1,81 @@ | |||||||
|  | /************************************************************************************* | ||||||
|  |  | ||||||
|  |     Grid physics library, www.github.com/paboyle/Grid  | ||||||
|  |  | ||||||
|  |     Source file: ./lib/algorithms/SparseMatrix.h | ||||||
|  |  | ||||||
|  |     Copyright (C) 2015 | ||||||
|  |  | ||||||
|  | Author: Peter Boyle <paboyle@ph.ed.ac.uk> | ||||||
|  |  | ||||||
|  |     This program is free software; you can redistribute it and/or modify | ||||||
|  |     it under the terms of the GNU General Public License as published by | ||||||
|  |     the Free Software Foundation; either version 2 of the License, or | ||||||
|  |     (at your option) any later version. | ||||||
|  |  | ||||||
|  |     This program is distributed in the hope that it will be useful, | ||||||
|  |     but WITHOUT ANY WARRANTY; without even the implied warranty of | ||||||
|  |     MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the | ||||||
|  |     GNU General Public License for more details. | ||||||
|  |  | ||||||
|  |     You should have received a copy of the GNU General Public License along | ||||||
|  |     with this program; if not, write to the Free Software Foundation, Inc., | ||||||
|  |     51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. | ||||||
|  |  | ||||||
|  |     See the full license in the file "LICENSE" in the top level distribution directory | ||||||
|  | *************************************************************************************/ | ||||||
|  | /*  END LEGAL */ | ||||||
|  | #ifndef  GRID_ALGORITHM_SPARSE_MATRIX_H | ||||||
|  | #define  GRID_ALGORITHM_SPARSE_MATRIX_H | ||||||
|  |  | ||||||
|  |  | ||||||
|  | NAMESPACE_BEGIN(Grid); | ||||||
|  |  | ||||||
|  | ///////////////////////////////////////////////////////////////////////////////////////////// | ||||||
|  | // Interface defining what I expect of a general sparse matrix, such as a Fermion action | ||||||
|  | ///////////////////////////////////////////////////////////////////////////////////////////// | ||||||
|  | template<class Field> class SparseMatrixBase { | ||||||
|  | public: | ||||||
|  |   virtual GridBase *Grid(void) =0; | ||||||
|  |   // Full checkerboar operations | ||||||
|  |   virtual void  M    (const Field &in, Field &out)=0; | ||||||
|  |   virtual void  Mdag (const Field &in, Field &out)=0; | ||||||
|  |   virtual void  MdagM(const Field &in, Field &out) { | ||||||
|  |     Field tmp (in.Grid()); | ||||||
|  |     M(in,tmp); | ||||||
|  |     Mdag(tmp,out); | ||||||
|  |   } | ||||||
|  |   virtual  void Mdiag    (const Field &in, Field &out)=0; | ||||||
|  |   virtual  void Mdir     (const Field &in, Field &out,int dir, int disp)=0; | ||||||
|  |   virtual  void MdirAll  (const Field &in, std::vector<Field> &out)=0; | ||||||
|  |   virtual ~SparseMatrixBase() {}; | ||||||
|  | }; | ||||||
|  |  | ||||||
|  | ///////////////////////////////////////////////////////////////////////////////////////////// | ||||||
|  | // Interface augmented by a red black sparse matrix, such as a Fermion action | ||||||
|  | ///////////////////////////////////////////////////////////////////////////////////////////// | ||||||
|  | template<class Field> class CheckerBoardedSparseMatrixBase : public SparseMatrixBase<Field> { | ||||||
|  | public: | ||||||
|  |   virtual GridBase *RedBlackGrid(void)=0; | ||||||
|  |  | ||||||
|  |   ////////////////////////////////////////////////////////////////////// | ||||||
|  |   // Query the even even properties to make algorithmic decisions | ||||||
|  |   ////////////////////////////////////////////////////////////////////// | ||||||
|  |   virtual RealD  Mass(void)        { return 0.0; }; | ||||||
|  |   virtual int    ConstEE(void)     { return 1; }; // Disable assumptions unless overridden | ||||||
|  |   virtual int    isTrivialEE(void) { return 0; }; // by a derived class that knows better | ||||||
|  |  | ||||||
|  |   // half checkerboard operaions | ||||||
|  |   virtual  void Meooe    (const Field &in, Field &out)=0; | ||||||
|  |   virtual  void Mooee    (const Field &in, Field &out)=0; | ||||||
|  |   virtual  void MooeeInv (const Field &in, Field &out)=0; | ||||||
|  |  | ||||||
|  |   virtual  void MeooeDag    (const Field &in, Field &out)=0; | ||||||
|  |   virtual  void MooeeDag    (const Field &in, Field &out)=0; | ||||||
|  |   virtual  void MooeeInvDag (const Field &in, Field &out)=0; | ||||||
|  |   virtual ~CheckerBoardedSparseMatrixBase() {}; | ||||||
|  | }; | ||||||
|  |  | ||||||
|  | NAMESPACE_END(Grid); | ||||||
|  |  | ||||||
|  | #endif | ||||||
							
								
								
									
										409
									
								
								Grid/algorithms/approx/Chebyshev.h
									
									
									
									
									
										Normal file
									
								
							
							
						
						
									
										409
									
								
								Grid/algorithms/approx/Chebyshev.h
									
									
									
									
									
										Normal file
									
								
							| @@ -0,0 +1,409 @@ | |||||||
|  | /************************************************************************************* | ||||||
|  |  | ||||||
|  |     Grid physics library, www.github.com/paboyle/Grid  | ||||||
|  |  | ||||||
|  |     Source file: ./lib/algorithms/approx/Chebyshev.h | ||||||
|  |  | ||||||
|  |     Copyright (C) 2015 | ||||||
|  |  | ||||||
|  | Author: Peter Boyle <paboyle@ph.ed.ac.uk> | ||||||
|  | Author: paboyle <paboyle@ph.ed.ac.uk> | ||||||
|  | Author: Christoph Lehner <clehner@bnl.gov> | ||||||
|  |  | ||||||
|  |     This program is free software; you can redistribute it and/or modify | ||||||
|  |     it under the terms of the GNU General Public License as published by | ||||||
|  |     the Free Software Foundation; either version 2 of the License, or | ||||||
|  |     (at your option) any later version. | ||||||
|  |  | ||||||
|  |     This program is distributed in the hope that it will be useful, | ||||||
|  |     but WITHOUT ANY WARRANTY; without even the implied warranty of | ||||||
|  |     MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the | ||||||
|  |     GNU General Public License for more details. | ||||||
|  |  | ||||||
|  |     You should have received a copy of the GNU General Public License along | ||||||
|  |     with this program; if not, write to the Free Software Foundation, Inc., | ||||||
|  |     51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. | ||||||
|  |  | ||||||
|  |     See the full license in the file "LICENSE" in the top level distribution directory | ||||||
|  | *************************************************************************************/ | ||||||
|  | /*  END LEGAL */ | ||||||
|  | #ifndef GRID_CHEBYSHEV_H | ||||||
|  | #define GRID_CHEBYSHEV_H | ||||||
|  |  | ||||||
|  | #include <Grid/algorithms/LinearOperator.h> | ||||||
|  |  | ||||||
|  | NAMESPACE_BEGIN(Grid); | ||||||
|  |  | ||||||
|  | struct ChebyParams : Serializable { | ||||||
|  |   GRID_SERIALIZABLE_CLASS_MEMBERS(ChebyParams, | ||||||
|  | 				  RealD, alpha,   | ||||||
|  | 				  RealD, beta,    | ||||||
|  | 				  int, Npoly); | ||||||
|  | }; | ||||||
|  |  | ||||||
|  | //////////////////////////////////////////////////////////////////////////////////////////// | ||||||
|  | // Generic Chebyshev approximations | ||||||
|  | //////////////////////////////////////////////////////////////////////////////////////////// | ||||||
|  | template<class Field> | ||||||
|  | class Chebyshev : public OperatorFunction<Field> { | ||||||
|  | private: | ||||||
|  |   using OperatorFunction<Field>::operator(); | ||||||
|  |  | ||||||
|  |   std::vector<RealD> Coeffs; | ||||||
|  |   int order; | ||||||
|  |   RealD hi; | ||||||
|  |   RealD lo; | ||||||
|  |  | ||||||
|  | public: | ||||||
|  |   void csv(std::ostream &out){ | ||||||
|  |     RealD diff = hi-lo; | ||||||
|  |     RealD delta = diff*1.0e-9; | ||||||
|  |     for (RealD x=lo; x<hi; x+=delta) { | ||||||
|  |       delta*=1.1; | ||||||
|  |       RealD f = approx(x); | ||||||
|  |       out<< x<<" "<<f<<std::endl; | ||||||
|  |     } | ||||||
|  |     return; | ||||||
|  |   } | ||||||
|  |  | ||||||
|  |   // Convenience for plotting the approximation | ||||||
|  |   void   PlotApprox(std::ostream &out) { | ||||||
|  |     out<<"Polynomial approx ["<<lo<<","<<hi<<"]"<<std::endl; | ||||||
|  |     for(RealD x=lo;x<hi;x+=(hi-lo)/50.0){ | ||||||
|  |       out <<x<<"\t"<<approx(x)<<std::endl; | ||||||
|  |     } | ||||||
|  |   }; | ||||||
|  |  | ||||||
|  |   Chebyshev(){}; | ||||||
|  |   Chebyshev(ChebyParams p){ Init(p.alpha,p.beta,p.Npoly);}; | ||||||
|  |   Chebyshev(RealD _lo,RealD _hi,int _order, RealD (* func)(RealD) ) {Init(_lo,_hi,_order,func);}; | ||||||
|  |   Chebyshev(RealD _lo,RealD _hi,int _order) {Init(_lo,_hi,_order);}; | ||||||
|  |  | ||||||
|  |   //////////////////////////////////////////////////////////////////////////////////////////////////// | ||||||
|  |   // c.f. numerical recipes "chebft"/"chebev". This is sec 5.8 "Chebyshev approximation". | ||||||
|  |   //////////////////////////////////////////////////////////////////////////////////////////////////// | ||||||
|  |   // CJ: the one we need for Lanczos | ||||||
|  |   void Init(RealD _lo,RealD _hi,int _order) | ||||||
|  |   { | ||||||
|  |     lo=_lo; | ||||||
|  |     hi=_hi; | ||||||
|  |     order=_order; | ||||||
|  |        | ||||||
|  |     if(order < 2) exit(-1); | ||||||
|  |     Coeffs.resize(order); | ||||||
|  |     Coeffs.assign(0.,order); | ||||||
|  |     Coeffs[order-1] = 1.; | ||||||
|  |   }; | ||||||
|  |    | ||||||
|  |   // PB - more efficient low pass drops high modes above the low as 1/x uses all Chebyshev's. | ||||||
|  |   // Similar kick effect below the threshold as Lanczos filter approach | ||||||
|  |   void InitLowPass(RealD _lo,RealD _hi,int _order) | ||||||
|  |   { | ||||||
|  |     lo=_lo; | ||||||
|  |     hi=_hi; | ||||||
|  |     order=_order; | ||||||
|  |        | ||||||
|  |     if(order < 2) exit(-1); | ||||||
|  |     Coeffs.resize(order); | ||||||
|  |     for(int j=0;j<order;j++){ | ||||||
|  |       RealD k=(order-1.0); | ||||||
|  |       RealD s=std::cos( j*M_PI*(k+0.5)/order ); | ||||||
|  |       Coeffs[j] = s * 2.0/order; | ||||||
|  |     } | ||||||
|  |      | ||||||
|  |   }; | ||||||
|  |  | ||||||
|  |   void Init(RealD _lo,RealD _hi,int _order, RealD (* func)(RealD)) | ||||||
|  |   { | ||||||
|  |     lo=_lo; | ||||||
|  |     hi=_hi; | ||||||
|  |     order=_order; | ||||||
|  |        | ||||||
|  |     if(order < 2) exit(-1); | ||||||
|  |     Coeffs.resize(order); | ||||||
|  |     for(int j=0;j<order;j++){ | ||||||
|  |       RealD s=0; | ||||||
|  |       for(int k=0;k<order;k++){ | ||||||
|  | 	RealD y=std::cos(M_PI*(k+0.5)/order); | ||||||
|  | 	RealD x=0.5*(y*(hi-lo)+(hi+lo)); | ||||||
|  | 	RealD f=func(x); | ||||||
|  | 	s=s+f*std::cos( j*M_PI*(k+0.5)/order ); | ||||||
|  |       } | ||||||
|  |       Coeffs[j] = s * 2.0/order; | ||||||
|  |     } | ||||||
|  |   }; | ||||||
|  |  | ||||||
|  |      | ||||||
|  |   void JacksonSmooth(void){ | ||||||
|  |     RealD M=order; | ||||||
|  |     RealD alpha = M_PI/(M+2); | ||||||
|  |     RealD lmax = std::cos(alpha); | ||||||
|  |     RealD sumUsq =0; | ||||||
|  |     std::vector<RealD> U(M); | ||||||
|  |     std::vector<RealD> a(M); | ||||||
|  |     std::vector<RealD> g(M); | ||||||
|  |     for(int n=0;n<=M;n++){ | ||||||
|  |       U[n] = std::sin((n+1)*std::acos(lmax))/std::sin(std::acos(lmax)); | ||||||
|  |       sumUsq += U[n]*U[n]; | ||||||
|  |     }       | ||||||
|  |     sumUsq = std::sqrt(sumUsq); | ||||||
|  |  | ||||||
|  |     for(int i=1;i<=M;i++){ | ||||||
|  |       a[i] = U[i]/sumUsq; | ||||||
|  |     } | ||||||
|  |     g[0] = 1.0; | ||||||
|  |     for(int m=1;m<=M;m++){ | ||||||
|  |       g[m] = 0; | ||||||
|  |       for(int i=0;i<=M-m;i++){ | ||||||
|  | 	g[m]+= a[i]*a[m+i]; | ||||||
|  |       } | ||||||
|  |     } | ||||||
|  |     for(int m=1;m<=M;m++){ | ||||||
|  |       Coeffs[m]*=g[m]; | ||||||
|  |     } | ||||||
|  |   } | ||||||
|  |   RealD approx(RealD x) // Convenience for plotting the approximation | ||||||
|  |   { | ||||||
|  |     RealD Tn; | ||||||
|  |     RealD Tnm; | ||||||
|  |     RealD Tnp; | ||||||
|  |        | ||||||
|  |     RealD y=( x-0.5*(hi+lo))/(0.5*(hi-lo)); | ||||||
|  |        | ||||||
|  |     RealD T0=1; | ||||||
|  |     RealD T1=y; | ||||||
|  |        | ||||||
|  |     RealD sum; | ||||||
|  |     sum = 0.5*Coeffs[0]*T0; | ||||||
|  |     sum+= Coeffs[1]*T1; | ||||||
|  |        | ||||||
|  |     Tn =T1; | ||||||
|  |     Tnm=T0; | ||||||
|  |     for(int i=2;i<order;i++){ | ||||||
|  |       Tnp=2*y*Tn-Tnm; | ||||||
|  |       Tnm=Tn; | ||||||
|  |       Tn =Tnp; | ||||||
|  |       sum+= Tn*Coeffs[i]; | ||||||
|  |     } | ||||||
|  |     return sum; | ||||||
|  |   }; | ||||||
|  |  | ||||||
|  |   RealD approxD(RealD x) | ||||||
|  |   { | ||||||
|  |     RealD Un; | ||||||
|  |     RealD Unm; | ||||||
|  |     RealD Unp; | ||||||
|  |        | ||||||
|  |     RealD y=( x-0.5*(hi+lo))/(0.5*(hi-lo)); | ||||||
|  |        | ||||||
|  |     RealD U0=1; | ||||||
|  |     RealD U1=2*y; | ||||||
|  |        | ||||||
|  |     RealD sum; | ||||||
|  |     sum = Coeffs[1]*U0; | ||||||
|  |     sum+= Coeffs[2]*U1*2.0; | ||||||
|  |        | ||||||
|  |     Un =U1; | ||||||
|  |     Unm=U0; | ||||||
|  |     for(int i=2;i<order-1;i++){ | ||||||
|  |       Unp=2*y*Un-Unm; | ||||||
|  |       Unm=Un; | ||||||
|  |       Un =Unp; | ||||||
|  |       sum+= Un*Coeffs[i+1]*(i+1.0); | ||||||
|  |     } | ||||||
|  |     return sum/(0.5*(hi-lo)); | ||||||
|  |   }; | ||||||
|  |      | ||||||
|  |   RealD approxInv(RealD z, RealD x0, int maxiter, RealD resid) { | ||||||
|  |     RealD x = x0; | ||||||
|  |     RealD eps; | ||||||
|  |        | ||||||
|  |     int i; | ||||||
|  |     for (i=0;i<maxiter;i++) { | ||||||
|  |       eps = approx(x) - z; | ||||||
|  |       if (fabs(eps / z) < resid) | ||||||
|  | 	return x; | ||||||
|  |       x = x - eps / approxD(x); | ||||||
|  |     } | ||||||
|  |        | ||||||
|  |     return std::numeric_limits<double>::quiet_NaN(); | ||||||
|  |   } | ||||||
|  |      | ||||||
|  |   // Implement the required interface | ||||||
|  |   void operator() (LinearOperatorBase<Field> &Linop, const Field &in, Field &out) { | ||||||
|  |  | ||||||
|  |     GridBase *grid=in.Grid(); | ||||||
|  |  | ||||||
|  |     int vol=grid->gSites(); | ||||||
|  |     typedef typename Field::vector_type vector_type; | ||||||
|  |  | ||||||
|  |     Field T0(grid); T0 = in;   | ||||||
|  |     Field T1(grid);  | ||||||
|  |     Field T2(grid); | ||||||
|  |     Field y(grid); | ||||||
|  |        | ||||||
|  |     Field *Tnm = &T0; | ||||||
|  |     Field *Tn  = &T1; | ||||||
|  |     Field *Tnp = &T2; | ||||||
|  |  | ||||||
|  |     // Tn=T1 = (xscale M + mscale)in | ||||||
|  |     RealD xscale = 2.0/(hi-lo); | ||||||
|  |     RealD mscale = -(hi+lo)/(hi-lo); | ||||||
|  |     Linop.HermOp(T0,y); | ||||||
|  |     axpby(T1,xscale,mscale,y,in); | ||||||
|  |  | ||||||
|  |     // sum = .5 c[0] T0 + c[1] T1 | ||||||
|  |     //    out = ()*T0 + Coeffs[1]*T1; | ||||||
|  |     axpby(out,0.5*Coeffs[0],Coeffs[1],T0,T1); | ||||||
|  |     for(int n=2;n<order;n++){ | ||||||
|  |  | ||||||
|  |       Linop.HermOp(*Tn,y); | ||||||
|  | #if 0 | ||||||
|  |       auto y_v = y.View(); | ||||||
|  |       auto Tn_v = Tn->View(); | ||||||
|  |       auto Tnp_v = Tnp->View(); | ||||||
|  |       auto Tnm_v = Tnm->View(); | ||||||
|  |       constexpr int Nsimd = vector_type::Nsimd(); | ||||||
|  |       accelerator_forNB(ss, in.Grid()->oSites(), Nsimd, { | ||||||
|  | 	  coalescedWrite(y_v[ss],xscale*y_v(ss)+mscale*Tn_v(ss)); | ||||||
|  | 	  coalescedWrite(Tnp_v[ss],2.0*y_v(ss)-Tnm_v(ss)); | ||||||
|  |       }); | ||||||
|  |       if ( Coeffs[n] != 0.0) { | ||||||
|  | 	axpy(out,Coeffs[n],*Tnp,out); | ||||||
|  |       } | ||||||
|  | #else | ||||||
|  |       axpby(y,xscale,mscale,y,(*Tn)); | ||||||
|  |       axpby(*Tnp,2.0,-1.0,y,(*Tnm)); | ||||||
|  |       if ( Coeffs[n] != 0.0) { | ||||||
|  | 	axpy(out,Coeffs[n],*Tnp,out); | ||||||
|  |       } | ||||||
|  | #endif | ||||||
|  |       // Cycle pointers to avoid copies | ||||||
|  |       Field *swizzle = Tnm; | ||||||
|  |       Tnm    =Tn; | ||||||
|  |       Tn     =Tnp; | ||||||
|  |       Tnp    =swizzle; | ||||||
|  | 	   | ||||||
|  |     } | ||||||
|  |   } | ||||||
|  | }; | ||||||
|  |  | ||||||
|  |  | ||||||
|  | template<class Field> | ||||||
|  | class ChebyshevLanczos : public Chebyshev<Field> { | ||||||
|  | private: | ||||||
|  |   std::vector<RealD> Coeffs; | ||||||
|  |   int order; | ||||||
|  |   RealD alpha; | ||||||
|  |   RealD beta; | ||||||
|  |   RealD mu; | ||||||
|  |  | ||||||
|  | public: | ||||||
|  |   ChebyshevLanczos(RealD _alpha,RealD _beta,RealD _mu,int _order) : | ||||||
|  |     alpha(_alpha), | ||||||
|  |     beta(_beta), | ||||||
|  |     mu(_mu) | ||||||
|  |   { | ||||||
|  |     order=_order; | ||||||
|  |     Coeffs.resize(order); | ||||||
|  |     for(int i=0;i<_order;i++){ | ||||||
|  |       Coeffs[i] = 0.0; | ||||||
|  |     } | ||||||
|  |     Coeffs[order-1]=1.0; | ||||||
|  |   }; | ||||||
|  |  | ||||||
|  |   void csv(std::ostream &out){ | ||||||
|  |     for (RealD x=-1.2*alpha; x<1.2*alpha; x+=(2.0*alpha)/10000) { | ||||||
|  |       RealD f = approx(x); | ||||||
|  |       out<< x<<" "<<f<<std::endl; | ||||||
|  |     } | ||||||
|  |     return; | ||||||
|  |   } | ||||||
|  |  | ||||||
|  |   RealD approx(RealD xx) // Convenience for plotting the approximation | ||||||
|  |   { | ||||||
|  |     RealD Tn; | ||||||
|  |     RealD Tnm; | ||||||
|  |     RealD Tnp; | ||||||
|  |     Real aa = alpha * alpha; | ||||||
|  |     Real bb = beta  *  beta; | ||||||
|  |        | ||||||
|  |     RealD x = ( 2.0 * (xx-mu)*(xx-mu) - (aa+bb) ) / (aa-bb); | ||||||
|  |  | ||||||
|  |     RealD y= x; | ||||||
|  |        | ||||||
|  |     RealD T0=1; | ||||||
|  |     RealD T1=y; | ||||||
|  |        | ||||||
|  |     RealD sum; | ||||||
|  |     sum = 0.5*Coeffs[0]*T0; | ||||||
|  |     sum+= Coeffs[1]*T1; | ||||||
|  |        | ||||||
|  |     Tn =T1; | ||||||
|  |     Tnm=T0; | ||||||
|  |     for(int i=2;i<order;i++){ | ||||||
|  |       Tnp=2*y*Tn-Tnm; | ||||||
|  |       Tnm=Tn; | ||||||
|  |       Tn =Tnp; | ||||||
|  |       sum+= Tn*Coeffs[i]; | ||||||
|  |     } | ||||||
|  |     return sum; | ||||||
|  |   }; | ||||||
|  |  | ||||||
|  |   // shift_Multiply in Rudy's code | ||||||
|  |   void AminusMuSq(LinearOperatorBase<Field> &Linop, const Field &in, Field &out)  | ||||||
|  |   { | ||||||
|  |     GridBase *grid=in.Grid(); | ||||||
|  |     Field tmp(grid); | ||||||
|  |  | ||||||
|  |     RealD aa= alpha*alpha; | ||||||
|  |     RealD bb= beta * beta; | ||||||
|  |  | ||||||
|  |     Linop.HermOp(in,out); | ||||||
|  |     out = out - mu*in; | ||||||
|  |  | ||||||
|  |     Linop.HermOp(out,tmp); | ||||||
|  |     tmp = tmp - mu * out; | ||||||
|  |  | ||||||
|  |     out = (2.0/ (aa-bb) ) * tmp -  ((aa+bb)/(aa-bb))*in; | ||||||
|  |   }; | ||||||
|  |   // Implement the required interface | ||||||
|  |   void operator() (LinearOperatorBase<Field> &Linop, const Field &in, Field &out) { | ||||||
|  |  | ||||||
|  |     GridBase *grid=in.Grid(); | ||||||
|  |  | ||||||
|  |     int vol=grid->gSites(); | ||||||
|  |  | ||||||
|  |     Field T0(grid); T0 = in;   | ||||||
|  |     Field T1(grid);  | ||||||
|  |     Field T2(grid); | ||||||
|  |     Field  y(grid); | ||||||
|  |        | ||||||
|  |     Field *Tnm = &T0; | ||||||
|  |     Field *Tn  = &T1; | ||||||
|  |     Field *Tnp = &T2; | ||||||
|  |  | ||||||
|  |     // Tn=T1 = (xscale M )*in | ||||||
|  |     AminusMuSq(Linop,T0,T1); | ||||||
|  |  | ||||||
|  |     // sum = .5 c[0] T0 + c[1] T1 | ||||||
|  |     out = (0.5*Coeffs[0])*T0 + Coeffs[1]*T1; | ||||||
|  |     for(int n=2;n<order;n++){ | ||||||
|  | 	 | ||||||
|  |       AminusMuSq(Linop,*Tn,y); | ||||||
|  |  | ||||||
|  |       *Tnp=2.0*y-(*Tnm); | ||||||
|  |  | ||||||
|  |       out=out+Coeffs[n]* (*Tnp); | ||||||
|  |  | ||||||
|  |       // Cycle pointers to avoid copies | ||||||
|  |       Field *swizzle = Tnm; | ||||||
|  |       Tnm    =Tn; | ||||||
|  |       Tn     =Tnp; | ||||||
|  |       Tnp    =swizzle; | ||||||
|  | 	   | ||||||
|  |     } | ||||||
|  |   } | ||||||
|  | }; | ||||||
|  | NAMESPACE_END(Grid); | ||||||
|  | #endif | ||||||
							
								
								
									
										152
									
								
								Grid/algorithms/approx/Forecast.h
									
									
									
									
									
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										152
									
								
								Grid/algorithms/approx/Forecast.h
									
									
									
									
									
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							| @@ -0,0 +1,152 @@ | |||||||
|  | /************************************************************************************* | ||||||
|  |  | ||||||
|  | Grid physics library, www.github.com/paboyle/Grid | ||||||
|  |  | ||||||
|  | Source file: ./lib/algorithms/approx/Forecast.h | ||||||
|  |  | ||||||
|  | Copyright (C) 2015 | ||||||
|  |  | ||||||
|  | Author: Peter Boyle <paboyle@ph.ed.ac.uk> | ||||||
|  | Author: paboyle <paboyle@ph.ed.ac.uk> | ||||||
|  | Author: David Murphy <dmurphy@phys.columbia.edu> | ||||||
|  |  | ||||||
|  | This program is free software; you can redistribute it and/or modify | ||||||
|  | it under the terms of the GNU General Public License as published by | ||||||
|  | the Free Software Foundation; either version 2 of the License, or | ||||||
|  | (at your option) any later version. | ||||||
|  |  | ||||||
|  | This program is distributed in the hope that it will be useful, | ||||||
|  | but WITHOUT ANY WARRANTY; without even the implied warranty of | ||||||
|  | MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the | ||||||
|  | GNU General Public License for more details. | ||||||
|  |  | ||||||
|  | You should have received a copy of the GNU General Public License along | ||||||
|  | with this program; if not, write to the Free Software Foundation, Inc., | ||||||
|  | 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. | ||||||
|  |  | ||||||
|  | See the full license in the file "LICENSE" in the top level distribution directory | ||||||
|  | *************************************************************************************/ | ||||||
|  | 			   /*  END LEGAL */ | ||||||
|  |  | ||||||
|  | #ifndef INCLUDED_FORECAST_H | ||||||
|  | #define INCLUDED_FORECAST_H | ||||||
|  |  | ||||||
|  | NAMESPACE_BEGIN(Grid); | ||||||
|  |  | ||||||
|  | // Abstract base class. | ||||||
|  | // Takes a matrix (Mat), a source (phi), and a vector of Fields (chi) | ||||||
|  | // and returns a forecasted solution to the system D*psi = phi (psi). | ||||||
|  | template<class Matrix, class Field> | ||||||
|  | class Forecast | ||||||
|  | { | ||||||
|  | public: | ||||||
|  |   virtual Field operator()(Matrix &Mat, const Field& phi, const std::vector<Field>& chi) = 0; | ||||||
|  | }; | ||||||
|  |  | ||||||
|  | // Implementation of Brower et al.'s chronological inverter (arXiv:hep-lat/9509012), | ||||||
|  | // used to forecast solutions across poles of the EOFA heatbath. | ||||||
|  | // | ||||||
|  | // Modified from CPS (cps_pp/src/util/dirac_op/d_op_base/comsrc/minresext.C) | ||||||
|  | template<class Matrix, class Field> | ||||||
|  | class ChronoForecast : public Forecast<Matrix,Field> | ||||||
|  | { | ||||||
|  | public: | ||||||
|  |   Field operator()(Matrix &Mat, const Field& phi, const std::vector<Field>& prev_solns) | ||||||
|  |   { | ||||||
|  |     int degree = prev_solns.size(); | ||||||
|  |     Field chi(phi); // forecasted solution | ||||||
|  |  | ||||||
|  |     // Trivial cases | ||||||
|  |     if(degree == 0){ chi = Zero(); return chi; } | ||||||
|  |     else if(degree == 1){ return prev_solns[0]; } | ||||||
|  |  | ||||||
|  |     //    RealD dot; | ||||||
|  |     ComplexD xp; | ||||||
|  |     Field r(phi); // residual | ||||||
|  |     Field Mv(phi); | ||||||
|  |     std::vector<Field> v(prev_solns); // orthonormalized previous solutions | ||||||
|  |     std::vector<Field> MdagMv(degree,phi); | ||||||
|  |  | ||||||
|  |     // Array to hold the matrix elements | ||||||
|  |     std::vector<std::vector<ComplexD>> G(degree, std::vector<ComplexD>(degree)); | ||||||
|  |  | ||||||
|  |     // Solution and source vectors | ||||||
|  |     std::vector<ComplexD> a(degree); | ||||||
|  |     std::vector<ComplexD> b(degree); | ||||||
|  |  | ||||||
|  |     // Orthonormalize the vector basis | ||||||
|  |     for(int i=0; i<degree; i++){ | ||||||
|  |       v[i] *= 1.0/std::sqrt(norm2(v[i])); | ||||||
|  |       for(int j=i+1; j<degree; j++){ v[j] -= innerProduct(v[i],v[j]) * v[i]; } | ||||||
|  |     } | ||||||
|  |  | ||||||
|  |     // Perform sparse matrix multiplication and construct rhs | ||||||
|  |     for(int i=0; i<degree; i++){ | ||||||
|  |       b[i] = innerProduct(v[i],phi); | ||||||
|  |       Mat.M(v[i],Mv); | ||||||
|  |       Mat.Mdag(Mv,MdagMv[i]); | ||||||
|  |       G[i][i] = innerProduct(v[i],MdagMv[i]); | ||||||
|  |     } | ||||||
|  |  | ||||||
|  |     // Construct the matrix | ||||||
|  |     for(int j=0; j<degree; j++){ | ||||||
|  |       for(int k=j+1; k<degree; k++){ | ||||||
|  | 	G[j][k] = innerProduct(v[j],MdagMv[k]); | ||||||
|  | 	G[k][j] = conjugate(G[j][k]); | ||||||
|  |       }} | ||||||
|  |  | ||||||
|  |     // Gauss-Jordan elimination with partial pivoting | ||||||
|  |     for(int i=0; i<degree; i++){ | ||||||
|  |  | ||||||
|  |       // Perform partial pivoting | ||||||
|  |       int k = i; | ||||||
|  |       for(int j=i+1; j<degree; j++){ if(abs(G[j][j]) > abs(G[k][k])){ k = j; } } | ||||||
|  |       if(k != i){ | ||||||
|  | 	xp = b[k]; | ||||||
|  | 	b[k] = b[i]; | ||||||
|  | 	b[i] = xp; | ||||||
|  | 	for(int j=0; j<degree; j++){ | ||||||
|  | 	  xp = G[k][j]; | ||||||
|  | 	  G[k][j] = G[i][j]; | ||||||
|  | 	  G[i][j] = xp; | ||||||
|  | 	} | ||||||
|  |       } | ||||||
|  |  | ||||||
|  |       // Convert matrix to upper triangular form | ||||||
|  |       for(int j=i+1; j<degree; j++){ | ||||||
|  | 	xp = G[j][i]/G[i][i]; | ||||||
|  | 	b[j] -= xp * b[i]; | ||||||
|  | 	for(int k=0; k<degree; k++){ G[j][k] -= xp*G[i][k]; } | ||||||
|  |       } | ||||||
|  |     } | ||||||
|  |  | ||||||
|  |     // Use Gaussian elimination to solve equations and calculate initial guess | ||||||
|  |     chi = Zero(); | ||||||
|  |     r = phi; | ||||||
|  |     for(int i=degree-1; i>=0; i--){ | ||||||
|  |       a[i] = 0.0; | ||||||
|  |       for(int j=i+1; j<degree; j++){ a[i] += G[i][j] * a[j]; } | ||||||
|  |       a[i] = (b[i]-a[i])/G[i][i]; | ||||||
|  |       chi += a[i]*v[i]; | ||||||
|  |       r -= a[i]*MdagMv[i]; | ||||||
|  |     } | ||||||
|  |  | ||||||
|  |     RealD true_r(0.0); | ||||||
|  |     ComplexD tmp; | ||||||
|  |     for(int i=0; i<degree; i++){ | ||||||
|  |       tmp = -b[i]; | ||||||
|  |       for(int j=0; j<degree; j++){ tmp += G[i][j]*a[j]; } | ||||||
|  |       tmp = conjugate(tmp)*tmp; | ||||||
|  |       true_r += std::sqrt(tmp.real()); | ||||||
|  |     } | ||||||
|  |  | ||||||
|  |     RealD error = std::sqrt(norm2(r)/norm2(phi)); | ||||||
|  |     std::cout << GridLogMessage << "ChronoForecast: |res|/|src| = " << error << std::endl; | ||||||
|  |  | ||||||
|  |     return chi; | ||||||
|  |   }; | ||||||
|  | }; | ||||||
|  |  | ||||||
|  | NAMESPACE_END(Grid); | ||||||
|  |  | ||||||
|  | #endif | ||||||
							
								
								
									
										129
									
								
								Grid/algorithms/approx/JacobiPolynomial.h
									
									
									
									
									
										Normal file
									
								
							
							
						
						
									
										129
									
								
								Grid/algorithms/approx/JacobiPolynomial.h
									
									
									
									
									
										Normal file
									
								
							| @@ -0,0 +1,129 @@ | |||||||
|  | #ifndef GRID_JACOBIPOLYNOMIAL_H | ||||||
|  | #define GRID_JACOBIPOLYNOMIAL_H | ||||||
|  |  | ||||||
|  | #include <Grid/algorithms/LinearOperator.h> | ||||||
|  |  | ||||||
|  | NAMESPACE_BEGIN(Grid); | ||||||
|  |  | ||||||
|  | template<class Field> | ||||||
|  | class JacobiPolynomial : public OperatorFunction<Field> { | ||||||
|  |  private: | ||||||
|  |   using OperatorFunction<Field>::operator(); | ||||||
|  |  | ||||||
|  |   int order; | ||||||
|  |   RealD hi; | ||||||
|  |   RealD lo; | ||||||
|  |   RealD alpha; | ||||||
|  |   RealD beta; | ||||||
|  |  | ||||||
|  |  public: | ||||||
|  |   void csv(std::ostream &out){ | ||||||
|  |     csv(out,lo,hi); | ||||||
|  |   } | ||||||
|  |   void csv(std::ostream &out,RealD llo,RealD hhi){ | ||||||
|  |     RealD diff = hhi-llo; | ||||||
|  |     RealD delta = diff*1.0e-5; | ||||||
|  |     for (RealD x=llo-delta; x<=hhi; x+=delta) { | ||||||
|  |       RealD f = approx(x); | ||||||
|  |       out<< x<<" "<<f <<std::endl; | ||||||
|  |     } | ||||||
|  |     return; | ||||||
|  |   } | ||||||
|  |  | ||||||
|  |   JacobiPolynomial(){}; | ||||||
|  |   JacobiPolynomial(RealD _lo,RealD _hi,int _order,RealD _alpha, RealD _beta) | ||||||
|  |   { | ||||||
|  |       lo=_lo; | ||||||
|  |       hi=_hi; | ||||||
|  |       alpha=_alpha; | ||||||
|  |       beta=_beta; | ||||||
|  |       order=_order; | ||||||
|  |   }; | ||||||
|  |  | ||||||
|  |   RealD approx(RealD x) // Convenience for plotting the approximation                                                        | ||||||
|  |   { | ||||||
|  |     RealD Tn; | ||||||
|  |     RealD Tnm; | ||||||
|  |     RealD Tnp; | ||||||
|  |  | ||||||
|  |     RealD y=( x-0.5*(hi+lo))/(0.5*(hi-lo)); | ||||||
|  |  | ||||||
|  |     RealD T0=1.0; | ||||||
|  |     RealD T1=(alpha-beta)*0.5+(alpha+beta+2.0)*0.5*y; | ||||||
|  |  | ||||||
|  |     Tn =T1; | ||||||
|  |     Tnm=T0; | ||||||
|  |     for(int n=2;n<=order;n++){ | ||||||
|  |       RealD cnp = 2.0*n*(n+alpha+beta)*(2.0*n-2.0+alpha+beta); | ||||||
|  |       RealD cny = (2.0*n-2.0+alpha+beta)*(2.0*n-1.0+alpha+beta)*(2.0*n+alpha+beta); | ||||||
|  |       RealD cn1 = (2.0*n+alpha+beta-1.0)*(alpha*alpha-beta*beta); | ||||||
|  |       RealD cnm = - 2.0*(n+alpha-1.0)*(n+beta-1.0)*(2.0*n+alpha+beta); | ||||||
|  |       Tnp= ( cny * y *Tn + cn1 * Tn + cnm * Tnm )/ cnp; | ||||||
|  |       Tnm=Tn; | ||||||
|  |       Tn =Tnp; | ||||||
|  |     } | ||||||
|  |     return Tnp; | ||||||
|  |   }; | ||||||
|  |  | ||||||
|  |   // Implement the required interface                                                                                        | ||||||
|  |   void operator() (LinearOperatorBase<Field> &Linop, const Field &in, Field &out) { | ||||||
|  |     GridBase *grid=in.Grid(); | ||||||
|  |  | ||||||
|  |     int vol=grid->gSites(); | ||||||
|  |  | ||||||
|  |     Field T0(grid); | ||||||
|  |     Field T1(grid); | ||||||
|  |     Field T2(grid); | ||||||
|  |     Field y(grid); | ||||||
|  |  | ||||||
|  |  | ||||||
|  |     Field *Tnm = &T0; | ||||||
|  |     Field *Tn  = &T1; | ||||||
|  |     Field *Tnp = &T2; | ||||||
|  |  | ||||||
|  |     //    RealD T0=1.0;                                                                                                      | ||||||
|  |     T0=in; | ||||||
|  |  | ||||||
|  |     //    RealD y=( x-0.5*(hi+lo))/(0.5*(hi-lo));                                                                            | ||||||
|  |     //           = x * 2/(hi-lo) - (hi+lo)/(hi-lo)                                                                           | ||||||
|  |     Linop.HermOp(T0,y); | ||||||
|  |     RealD xscale = 2.0/(hi-lo); | ||||||
|  |     RealD mscale = -(hi+lo)/(hi-lo); | ||||||
|  |     Linop.HermOp(T0,y); | ||||||
|  |     y=y*xscale+in*mscale; | ||||||
|  |  | ||||||
|  |     // RealD T1=(alpha-beta)*0.5+(alpha+beta+2.0)*0.5*y; | ||||||
|  |     RealD halfAmB  = (alpha-beta)*0.5; | ||||||
|  |     RealD halfApBp2= (alpha+beta+2.0)*0.5; | ||||||
|  |     T1 = halfAmB * in + halfApBp2*y; | ||||||
|  |  | ||||||
|  |     for(int n=2;n<=order;n++){ | ||||||
|  |  | ||||||
|  |       Linop.HermOp(*Tn,y); | ||||||
|  |       y=xscale*y+mscale*(*Tn); | ||||||
|  |  | ||||||
|  |       RealD cnp = 2.0*n*(n+alpha+beta)*(2.0*n-2.0+alpha+beta); | ||||||
|  |       RealD cny = (2.0*n-2.0+alpha+beta)*(2.0*n-1.0+alpha+beta)*(2.0*n+alpha+beta); | ||||||
|  |       RealD cn1 = (2.0*n+alpha+beta-1.0)*(alpha*alpha-beta*beta); | ||||||
|  |       RealD cnm = - 2.0*(n+alpha-1.0)*(n+beta-1.0)*(2.0*n+alpha+beta); | ||||||
|  |  | ||||||
|  |       //      Tnp= ( cny * y *Tn + cn1 * Tn + cnm * Tnm )/ cnp;                                                              | ||||||
|  |       cny=cny/cnp; | ||||||
|  |       cn1=cn1/cnp; | ||||||
|  |       cn1=cn1/cnp; | ||||||
|  |       cnm=cnm/cnp; | ||||||
|  |  | ||||||
|  |       *Tnp=cny*y + cn1 *(*Tn) + cnm * (*Tnm); | ||||||
|  |  | ||||||
|  |       // Cycle pointers to avoid copies                                                                                      | ||||||
|  |       Field *swizzle = Tnm; | ||||||
|  |       Tnm    =Tn; | ||||||
|  |       Tn     =Tnp; | ||||||
|  |       Tnp    =swizzle; | ||||||
|  |     } | ||||||
|  |     out=*Tnp; | ||||||
|  |  | ||||||
|  |   } | ||||||
|  | }; | ||||||
|  | NAMESPACE_END(Grid); | ||||||
|  | #endif | ||||||
| @@ -25,9 +25,10 @@ Author: Azusa Yamaguchi <ayamaguc@staffmail.ed.ac.uk> | |||||||
|     See the full license in the file "LICENSE" in the top level distribution directory |     See the full license in the file "LICENSE" in the top level distribution directory | ||||||
|     *************************************************************************************/ |     *************************************************************************************/ | ||||||
|     /*  END LEGAL */ |     /*  END LEGAL */ | ||||||
| #include <Grid.h> | #include <Grid/GridCore.h> | ||||||
|  | 
 | ||||||
|  | NAMESPACE_BEGIN(Grid); | ||||||
| 
 | 
 | ||||||
| namespace Grid { |  | ||||||
| double MultiShiftFunction::approx(double x) | double MultiShiftFunction::approx(double x) | ||||||
| { | { | ||||||
|   double a = norm; |   double a = norm; | ||||||
| @@ -53,4 +54,4 @@ void MultiShiftFunction::csv(std::ostream &out) | |||||||
|   } |   } | ||||||
|   return; |   return; | ||||||
| } | } | ||||||
| } | NAMESPACE_END(Grid); | ||||||
| @@ -29,7 +29,7 @@ Author: Peter Boyle <paboyle@ph.ed.ac.uk> | |||||||
| #ifndef MULTI_SHIFT_FUNCTION | #ifndef MULTI_SHIFT_FUNCTION | ||||||
| #define MULTI_SHIFT_FUNCTION | #define MULTI_SHIFT_FUNCTION | ||||||
| 
 | 
 | ||||||
| namespace Grid { | NAMESPACE_BEGIN(Grid); | ||||||
| 
 | 
 | ||||||
| class MultiShiftFunction { | class MultiShiftFunction { | ||||||
| public: | public: | ||||||
| @@ -63,5 +63,5 @@ public: | |||||||
|   } |   } | ||||||
| 
 | 
 | ||||||
| }; | }; | ||||||
| } | NAMESPACE_END(Grid); | ||||||
| #endif | #endif | ||||||
| @@ -20,7 +20,7 @@ | |||||||
| #include<iomanip> | #include<iomanip> | ||||||
| #include<cassert> | #include<cassert> | ||||||
| 
 | 
 | ||||||
| #include<algorithms/approx/Remez.h> | #include<Grid/algorithms/approx/Remez.h> | ||||||
| 
 | 
 | ||||||
| // Constructor
 | // Constructor
 | ||||||
| AlgRemez::AlgRemez(double lower, double upper, long precision)  | AlgRemez::AlgRemez(double lower, double upper, long precision)  | ||||||
| @@ -298,7 +298,7 @@ void AlgRemez::stpini(bigfloat *step) { | |||||||
| // Search for error maxima and minima
 | // Search for error maxima and minima
 | ||||||
| void AlgRemez::search(bigfloat *step) { | void AlgRemez::search(bigfloat *step) { | ||||||
|   bigfloat a, q, xm, ym, xn, yn, xx0, xx1; |   bigfloat a, q, xm, ym, xn, yn, xx0, xx1; | ||||||
|   int i, j, meq, emsign, ensign, steps; |   int i, meq, emsign, ensign, steps; | ||||||
| 
 | 
 | ||||||
|   meq = neq + 1; |   meq = neq + 1; | ||||||
|   bigfloat *yy = new bigfloat[meq]; |   bigfloat *yy = new bigfloat[meq]; | ||||||
| @@ -306,7 +306,6 @@ void AlgRemez::search(bigfloat *step) { | |||||||
|   bigfloat eclose = 1.0e30; |   bigfloat eclose = 1.0e30; | ||||||
|   bigfloat farther = 0l; |   bigfloat farther = 0l; | ||||||
| 
 | 
 | ||||||
|   j = 1; |  | ||||||
|   xx0 = apstrt; |   xx0 = apstrt; | ||||||
| 
 | 
 | ||||||
|   for (i = 0; i < meq; i++) { |   for (i = 0; i < meq; i++) { | ||||||
| @@ -16,7 +16,7 @@ | |||||||
| #define INCLUDED_ALG_REMEZ_H | #define INCLUDED_ALG_REMEZ_H | ||||||
| 
 | 
 | ||||||
| #include <stddef.h> | #include <stddef.h> | ||||||
| #include <Config.h> | #include <Grid/GridStd.h> | ||||||
| 
 | 
 | ||||||
| #ifdef HAVE_LIBGMP | #ifdef HAVE_LIBGMP | ||||||
| #include "bigfloat.h" | #include "bigfloat.h" | ||||||
							
								
								
									
										473
									
								
								Grid/algorithms/approx/RemezGeneral.cc
									
									
									
									
									
										Normal file
									
								
							
							
						
						
									
										473
									
								
								Grid/algorithms/approx/RemezGeneral.cc
									
									
									
									
									
										Normal file
									
								
							| @@ -0,0 +1,473 @@ | |||||||
|  | #include<math.h> | ||||||
|  | #include<stdio.h> | ||||||
|  | #include<stdlib.h> | ||||||
|  | #include<string> | ||||||
|  | #include<iostream> | ||||||
|  | #include<iomanip> | ||||||
|  | #include<cassert> | ||||||
|  |  | ||||||
|  | #include<Grid/algorithms/approx/RemezGeneral.h> | ||||||
|  |  | ||||||
|  |  | ||||||
|  | // Constructor | ||||||
|  | AlgRemezGeneral::AlgRemezGeneral(double lower, double upper, long precision, | ||||||
|  | 				 bigfloat (*f)(bigfloat x, void *data), void *data): f(f),  | ||||||
|  | 										     data(data),  | ||||||
|  | 										     prec(precision), | ||||||
|  | 										     apstrt(lower), apend(upper), apwidt(upper - lower), | ||||||
|  | 										     n(0), d(0), pow_n(0), pow_d(0) | ||||||
|  | { | ||||||
|  |   bigfloat::setDefaultPrecision(prec); | ||||||
|  |  | ||||||
|  |   std::cout<<"Approximation bounds are ["<<apstrt<<","<<apend<<"]\n"; | ||||||
|  |   std::cout<<"Precision of arithmetic is "<<precision<<std::endl; | ||||||
|  | } | ||||||
|  |  | ||||||
|  | //Determine the properties of the numerator and denominator polynomials | ||||||
|  | void AlgRemezGeneral::setupPolyProperties(int num_degree, int den_degree, PolyType num_type_in, PolyType den_type_in){ | ||||||
|  |   pow_n = num_degree; | ||||||
|  |   pow_d = den_degree; | ||||||
|  |  | ||||||
|  |   if(pow_n % 2 == 0 && num_type_in == PolyType::Odd) assert(0); | ||||||
|  |   if(pow_n % 2 == 1 && num_type_in == PolyType::Even) assert(0); | ||||||
|  |  | ||||||
|  |   if(pow_d % 2 == 0 && den_type_in == PolyType::Odd) assert(0); | ||||||
|  |   if(pow_d % 2 == 1 && den_type_in == PolyType::Even) assert(0); | ||||||
|  |  | ||||||
|  |   num_type = num_type_in; | ||||||
|  |   den_type = den_type_in; | ||||||
|  |  | ||||||
|  |   num_pows.resize(pow_n+1); | ||||||
|  |   den_pows.resize(pow_d+1); | ||||||
|  |  | ||||||
|  |   int n_in = 0; | ||||||
|  |   bool odd = num_type == PolyType::Full || num_type == PolyType::Odd; | ||||||
|  |   bool even = num_type == PolyType::Full || num_type == PolyType::Even; | ||||||
|  |   for(int i=0;i<=pow_n;i++){ | ||||||
|  |     num_pows[i] = -1; | ||||||
|  |     if(i % 2 == 0 && even) num_pows[i] = n_in++; | ||||||
|  |     if(i % 2 == 1 && odd) num_pows[i] = n_in++; | ||||||
|  |   } | ||||||
|  |  | ||||||
|  |   std::cout << n_in << " terms in numerator" << std::endl; | ||||||
|  |   --n_in; //power is 1 less than the number of terms, eg  pow=1   a x^1  + b x^0 | ||||||
|  |  | ||||||
|  |   int d_in = 0; | ||||||
|  |   odd = den_type == PolyType::Full || den_type == PolyType::Odd; | ||||||
|  |   even = den_type == PolyType::Full || den_type == PolyType::Even; | ||||||
|  |   for(int i=0;i<=pow_d;i++){ | ||||||
|  |     den_pows[i] = -1; | ||||||
|  |     if(i % 2 == 0 && even) den_pows[i] = d_in++; | ||||||
|  |     if(i % 2 == 1 && odd) den_pows[i] = d_in++; | ||||||
|  |   } | ||||||
|  |  | ||||||
|  |   std::cout << d_in << " terms in denominator" << std::endl; | ||||||
|  |   --d_in; | ||||||
|  |  | ||||||
|  |   n = n_in; | ||||||
|  |   d = d_in; | ||||||
|  | } | ||||||
|  |  | ||||||
|  | //Setup algorithm | ||||||
|  | void AlgRemezGeneral::reinitializeAlgorithm(){ | ||||||
|  |   spread = 1.0e37; | ||||||
|  |   iter = 0; | ||||||
|  |  | ||||||
|  |   neq = n + d + 1; //not +2 because highest-power term in denominator is fixed to 1 | ||||||
|  |  | ||||||
|  |   param.resize(neq); | ||||||
|  |   yy.resize(neq+1); | ||||||
|  |  | ||||||
|  |   //Initialize linear equation temporaries | ||||||
|  |   A.resize(neq*neq); | ||||||
|  |   B.resize(neq); | ||||||
|  |   IPS.resize(neq); | ||||||
|  |  | ||||||
|  |   //Initialize maximum and minimum errors | ||||||
|  |   xx.resize(neq+2); | ||||||
|  |   mm.resize(neq+1); | ||||||
|  |   initialGuess(); | ||||||
|  |  | ||||||
|  |   //Initialize search steps | ||||||
|  |   step.resize(neq+1); | ||||||
|  |   stpini(); | ||||||
|  | } | ||||||
|  |  | ||||||
|  | double AlgRemezGeneral::generateApprox(const int num_degree, const int den_degree,  | ||||||
|  | 				       const PolyType num_type_in, const PolyType den_type_in,  | ||||||
|  | 				       const double _tolerance, const int report_freq){ | ||||||
|  |   //Setup the properties of the polynomial | ||||||
|  |   setupPolyProperties(num_degree, den_degree, num_type_in, den_type_in); | ||||||
|  |  | ||||||
|  |   //Setup the algorithm | ||||||
|  |   reinitializeAlgorithm(); | ||||||
|  |  | ||||||
|  |   bigfloat tolerance = _tolerance; | ||||||
|  |  | ||||||
|  |   //Iterate until convergance | ||||||
|  |   while (spread > tolerance) {  | ||||||
|  |     if (iter++ % report_freq==0) | ||||||
|  |       std::cout<<"Iteration " <<iter-1<<" spread "<<(double)spread<<" delta "<<(double)delta << std::endl;  | ||||||
|  |  | ||||||
|  |     equations(); | ||||||
|  |     if (delta < tolerance) { | ||||||
|  |       std::cout<<"Iteration " << iter-1 << " delta too small (" << delta << "<" << tolerance << "), try increasing precision\n"; | ||||||
|  |       assert(0); | ||||||
|  |     };     | ||||||
|  |     assert( delta>= tolerance ); | ||||||
|  |  | ||||||
|  |     search(); | ||||||
|  |   } | ||||||
|  |  | ||||||
|  |   int sign; | ||||||
|  |   double error = (double)getErr(mm[0],&sign); | ||||||
|  |   std::cout<<"Converged at "<<iter<<" iterations; error = "<<error<<std::endl; | ||||||
|  |  | ||||||
|  |   // Return the maximum error in the approximation | ||||||
|  |   return error; | ||||||
|  | } | ||||||
|  |  | ||||||
|  |  | ||||||
|  | // Initial values of maximal and minimal errors | ||||||
|  | void AlgRemezGeneral::initialGuess(){ | ||||||
|  |   // Supply initial guesses for solution points | ||||||
|  |   long ncheb = neq;			// Degree of Chebyshev error estimate | ||||||
|  |  | ||||||
|  |   // Find ncheb+1 extrema of Chebyshev polynomial | ||||||
|  |   bigfloat a = ncheb; | ||||||
|  |   bigfloat r; | ||||||
|  |  | ||||||
|  |   mm[0] = apstrt; | ||||||
|  |   for (long i = 1; i < ncheb; i++) { | ||||||
|  |     r = 0.5 * (1 - cos((M_PI * i)/(double) a)); | ||||||
|  |     //r *= sqrt_bf(r); | ||||||
|  |     r = (exp((double)r)-1.0)/(exp(1.0)-1.0); | ||||||
|  |     mm[i] = apstrt + r * apwidt; | ||||||
|  |   } | ||||||
|  |   mm[ncheb] = apend; | ||||||
|  |  | ||||||
|  |   a = 2.0 * ncheb; | ||||||
|  |   for (long i = 0; i <= ncheb; i++) { | ||||||
|  |     r = 0.5 * (1 - cos(M_PI * (2*i+1)/(double) a)); | ||||||
|  |     //r *= sqrt_bf(r); // Squeeze to low end of interval | ||||||
|  |     r = (exp((double)r)-1.0)/(exp(1.0)-1.0); | ||||||
|  |     xx[i] = apstrt + r * apwidt; | ||||||
|  |   } | ||||||
|  | } | ||||||
|  |  | ||||||
|  | // Initialise step sizes | ||||||
|  | void AlgRemezGeneral::stpini(){ | ||||||
|  |   xx[neq+1] = apend; | ||||||
|  |   delta = 0.25; | ||||||
|  |   step[0] = xx[0] - apstrt; | ||||||
|  |   for (int i = 1; i < neq; i++) step[i] = xx[i] - xx[i-1]; | ||||||
|  |   step[neq] = step[neq-1]; | ||||||
|  | } | ||||||
|  |  | ||||||
|  | // Search for error maxima and minima | ||||||
|  | void AlgRemezGeneral::search(){ | ||||||
|  |   bigfloat a, q, xm, ym, xn, yn, xx1; | ||||||
|  |   int emsign, ensign, steps; | ||||||
|  |  | ||||||
|  |   int meq = neq + 1; | ||||||
|  |  | ||||||
|  |   bigfloat eclose = 1.0e30; | ||||||
|  |   bigfloat farther = 0l; | ||||||
|  |  | ||||||
|  |   bigfloat xx0 = apstrt; | ||||||
|  |  | ||||||
|  |   for (int i = 0; i < meq; i++) { | ||||||
|  |     steps = 0; | ||||||
|  |     xx1 = xx[i]; // Next zero | ||||||
|  |     if (i == meq-1) xx1 = apend; | ||||||
|  |     xm = mm[i]; | ||||||
|  |     ym = getErr(xm,&emsign); | ||||||
|  |     q = step[i]; | ||||||
|  |     xn = xm + q; | ||||||
|  |     if (xn < xx0 || xn >= xx1) {	// Cannot skip over adjacent boundaries | ||||||
|  |       q = -q; | ||||||
|  |       xn = xm; | ||||||
|  |       yn = ym; | ||||||
|  |       ensign = emsign; | ||||||
|  |     } else { | ||||||
|  |       yn = getErr(xn,&ensign); | ||||||
|  |       if (yn < ym) { | ||||||
|  | 	q = -q; | ||||||
|  | 	xn = xm; | ||||||
|  | 	yn = ym; | ||||||
|  | 	ensign = emsign; | ||||||
|  |       } | ||||||
|  |     } | ||||||
|  |    | ||||||
|  |     while(yn >= ym) {		// March until error becomes smaller. | ||||||
|  |       if (++steps > 10) | ||||||
|  |       	break; | ||||||
|  |        | ||||||
|  |       ym = yn; | ||||||
|  |       xm = xn; | ||||||
|  |       emsign = ensign; | ||||||
|  |       a = xm + q; | ||||||
|  |       if (a == xm || a <= xx0 || a >= xx1) | ||||||
|  | 	break;// Must not skip over the zeros either side.       | ||||||
|  |  | ||||||
|  |       xn = a; | ||||||
|  |       yn = getErr(xn,&ensign); | ||||||
|  |     } | ||||||
|  |  | ||||||
|  |     mm[i] = xm;			// Position of maximum | ||||||
|  |     yy[i] = ym;			// Value of maximum | ||||||
|  |  | ||||||
|  |     if (eclose > ym) eclose = ym; | ||||||
|  |     if (farther < ym) farther = ym; | ||||||
|  |  | ||||||
|  |     xx0 = xx1; // Walk to next zero. | ||||||
|  |   } // end of search loop | ||||||
|  |  | ||||||
|  |   q = (farther - eclose);	// Decrease step size if error spread increased | ||||||
|  |  | ||||||
|  |   if (eclose != 0.0) q /= eclose; // Relative error spread | ||||||
|  |  | ||||||
|  |   if (q >= spread) | ||||||
|  |     delta *= 0.5; // Spread is increasing; decrease step size | ||||||
|  |    | ||||||
|  |   spread = q; | ||||||
|  |  | ||||||
|  |   for (int i = 0; i < neq; i++) { | ||||||
|  |     q = yy[i+1]; | ||||||
|  |     if (q != 0.0) q = yy[i] / q  - (bigfloat)1l; | ||||||
|  |     else q = 0.0625; | ||||||
|  |     if (q > (bigfloat)0.25) q = 0.25; | ||||||
|  |     q *= mm[i+1] - mm[i]; | ||||||
|  |     step[i] = q * delta; | ||||||
|  |   } | ||||||
|  |   step[neq] = step[neq-1]; | ||||||
|  |    | ||||||
|  |   for (int i = 0; i < neq; i++) {	// Insert new locations for the zeros. | ||||||
|  |     xm = xx[i] - step[i]; | ||||||
|  |  | ||||||
|  |     if (xm <= apstrt) | ||||||
|  |       continue; | ||||||
|  |  | ||||||
|  |     if (xm >= apend) | ||||||
|  |       continue; | ||||||
|  |  | ||||||
|  |     if (xm <= mm[i]) | ||||||
|  |       xm = (bigfloat)0.5 * (mm[i] + xx[i]);     | ||||||
|  |  | ||||||
|  |     if (xm >= mm[i+1]) | ||||||
|  |       xm = (bigfloat)0.5 * (mm[i+1] + xx[i]); | ||||||
|  |      | ||||||
|  |     xx[i] = xm; | ||||||
|  |   } | ||||||
|  | } | ||||||
|  |  | ||||||
|  | // Solve the equations | ||||||
|  | void AlgRemezGeneral::equations(){ | ||||||
|  |   bigfloat x, y, z; | ||||||
|  |   bigfloat *aa; | ||||||
|  |    | ||||||
|  |   for (int i = 0; i < neq; i++) {	// set up the equations for solution by simq() | ||||||
|  |     int ip = neq * i;		// offset to 1st element of this row of matrix | ||||||
|  |     x = xx[i];			// the guess for this row | ||||||
|  |     y = func(x);		// right-hand-side vector | ||||||
|  |  | ||||||
|  |     z = (bigfloat)1l; | ||||||
|  |     aa = A.data()+ip; | ||||||
|  |     int t = 0; | ||||||
|  |     for (int j = 0; j <= pow_n; j++) { | ||||||
|  |       if(num_pows[j] != -1){ *aa++ = z; t++; } | ||||||
|  |       z *= x; | ||||||
|  |     } | ||||||
|  |     assert(t == n+1); | ||||||
|  |  | ||||||
|  |     z = (bigfloat)1l; | ||||||
|  |     t = 0; | ||||||
|  |     for (int j = 0; j < pow_d; j++) { | ||||||
|  |       if(den_pows[j] != -1){ *aa++ = -y * z; t++; } | ||||||
|  |       z *= x; | ||||||
|  |     } | ||||||
|  |     assert(t == d); | ||||||
|  |  | ||||||
|  |     B[i] = y * z;		// Right hand side vector | ||||||
|  |   } | ||||||
|  |  | ||||||
|  |   // Solve the simultaneous linear equations. | ||||||
|  |   if (simq()){ | ||||||
|  |     std::cout<<"simq failed\n"; | ||||||
|  |     exit(0); | ||||||
|  |   } | ||||||
|  | } | ||||||
|  |  | ||||||
|  |  | ||||||
|  | // Evaluate the rational form P(x)/Q(x) using coefficients | ||||||
|  | // from the solution vector param | ||||||
|  | bigfloat AlgRemezGeneral::approx(const bigfloat x) const{ | ||||||
|  |   // Work backwards toward the constant term. | ||||||
|  |   int c = n; | ||||||
|  |   bigfloat yn = param[c--];		// Highest order numerator coefficient | ||||||
|  |   for (int i = pow_n-1; i >= 0; i--) yn = x * yn  +  (num_pows[i] != -1 ? param[c--] : bigfloat(0l));   | ||||||
|  |  | ||||||
|  |   c = n+d; | ||||||
|  |   bigfloat yd = 1l; //Highest degree coefficient is 1.0 | ||||||
|  |   for (int i = pow_d-1; i >= 0; i--) yd = x * yd  +  (den_pows[i] != -1 ? param[c--] : bigfloat(0l));  | ||||||
|  |  | ||||||
|  |   return(yn/yd); | ||||||
|  | } | ||||||
|  |  | ||||||
|  | // Compute size and sign of the approximation error at x | ||||||
|  | bigfloat AlgRemezGeneral::getErr(bigfloat x, int *sign) const{ | ||||||
|  |   bigfloat f = func(x); | ||||||
|  |   bigfloat e = approx(x) - f; | ||||||
|  |   if (f != 0) e /= f; | ||||||
|  |   if (e < (bigfloat)0.0) { | ||||||
|  |     *sign = -1; | ||||||
|  |     e = -e; | ||||||
|  |   } | ||||||
|  |   else *sign = 1; | ||||||
|  |    | ||||||
|  |   return(e); | ||||||
|  | } | ||||||
|  |  | ||||||
|  | // Solve the system AX=B | ||||||
|  | int AlgRemezGeneral::simq(){ | ||||||
|  |  | ||||||
|  |   int ip, ipj, ipk, ipn; | ||||||
|  |   int idxpiv; | ||||||
|  |   int kp, kp1, kpk, kpn; | ||||||
|  |   int nip, nkp; | ||||||
|  |   bigfloat em, q, rownrm, big, size, pivot, sum; | ||||||
|  |   bigfloat *aa; | ||||||
|  |   bigfloat *X = param.data(); | ||||||
|  |  | ||||||
|  |   int n = neq; | ||||||
|  |   int nm1 = n - 1; | ||||||
|  |   // Initialize IPS and X | ||||||
|  |    | ||||||
|  |   int ij = 0; | ||||||
|  |   for (int i = 0; i < n; i++) { | ||||||
|  |     IPS[i] = i; | ||||||
|  |     rownrm = 0.0; | ||||||
|  |     for(int j = 0; j < n; j++) { | ||||||
|  |       q = abs_bf(A[ij]); | ||||||
|  |       if(rownrm < q) rownrm = q; | ||||||
|  |       ++ij; | ||||||
|  |     } | ||||||
|  |     if (rownrm == (bigfloat)0l) { | ||||||
|  |       std::cout<<"simq rownrm=0\n"; | ||||||
|  |       return(1); | ||||||
|  |     } | ||||||
|  |     X[i] = (bigfloat)1.0 / rownrm; | ||||||
|  |   } | ||||||
|  |    | ||||||
|  |   for (int k = 0; k < nm1; k++) { | ||||||
|  |     big = 0.0; | ||||||
|  |     idxpiv = 0; | ||||||
|  |      | ||||||
|  |     for (int i = k; i < n; i++) { | ||||||
|  |       ip = IPS[i]; | ||||||
|  |       ipk = n*ip + k; | ||||||
|  |       size = abs_bf(A[ipk]) * X[ip]; | ||||||
|  |       if (size > big) { | ||||||
|  | 	big = size; | ||||||
|  | 	idxpiv = i; | ||||||
|  |       } | ||||||
|  |     } | ||||||
|  |      | ||||||
|  |     if (big == (bigfloat)0l) { | ||||||
|  |       std::cout<<"simq big=0\n"; | ||||||
|  |       return(2); | ||||||
|  |     } | ||||||
|  |     if (idxpiv != k) { | ||||||
|  |       int j = IPS[k]; | ||||||
|  |       IPS[k] = IPS[idxpiv]; | ||||||
|  |       IPS[idxpiv] = j; | ||||||
|  |     } | ||||||
|  |     kp = IPS[k]; | ||||||
|  |     kpk = n*kp + k; | ||||||
|  |     pivot = A[kpk]; | ||||||
|  |     kp1 = k+1; | ||||||
|  |     for (int i = kp1; i < n; i++) { | ||||||
|  |       ip = IPS[i]; | ||||||
|  |       ipk = n*ip + k; | ||||||
|  |       em = -A[ipk] / pivot; | ||||||
|  |       A[ipk] = -em; | ||||||
|  |       nip = n*ip; | ||||||
|  |       nkp = n*kp; | ||||||
|  |       aa = A.data()+nkp+kp1; | ||||||
|  |       for (int j = kp1; j < n; j++) { | ||||||
|  | 	ipj = nip + j; | ||||||
|  | 	A[ipj] = A[ipj] + em * *aa++; | ||||||
|  |       } | ||||||
|  |     } | ||||||
|  |   } | ||||||
|  |   kpn = n * IPS[n-1] + n - 1;	// last element of IPS[n] th row | ||||||
|  |   if (A[kpn] == (bigfloat)0l) { | ||||||
|  |     std::cout<<"simq A[kpn]=0\n"; | ||||||
|  |     return(3); | ||||||
|  |   } | ||||||
|  |  | ||||||
|  |    | ||||||
|  |   ip = IPS[0]; | ||||||
|  |   X[0] = B[ip]; | ||||||
|  |   for (int i = 1; i < n; i++) { | ||||||
|  |     ip = IPS[i]; | ||||||
|  |     ipj = n * ip; | ||||||
|  |     sum = 0.0; | ||||||
|  |     for (int j = 0; j < i; j++) { | ||||||
|  |       sum += A[ipj] * X[j]; | ||||||
|  |       ++ipj; | ||||||
|  |     } | ||||||
|  |     X[i] = B[ip] - sum; | ||||||
|  |   } | ||||||
|  |    | ||||||
|  |   ipn = n * IPS[n-1] + n - 1; | ||||||
|  |   X[n-1] = X[n-1] / A[ipn]; | ||||||
|  |    | ||||||
|  |   for (int iback = 1; iback < n; iback++) { | ||||||
|  |     //i goes (n-1),...,1 | ||||||
|  |     int i = nm1 - iback; | ||||||
|  |     ip = IPS[i]; | ||||||
|  |     nip = n*ip; | ||||||
|  |     sum = 0.0; | ||||||
|  |     aa = A.data()+nip+i+1; | ||||||
|  |     for (int j= i + 1; j < n; j++)  | ||||||
|  |       sum += *aa++ * X[j]; | ||||||
|  |     X[i] = (X[i] - sum) / A[nip+i]; | ||||||
|  |   } | ||||||
|  |    | ||||||
|  |   return(0); | ||||||
|  | } | ||||||
|  |  | ||||||
|  | void AlgRemezGeneral::csv(std::ostream & os) const{ | ||||||
|  |   os << "Numerator" << std::endl; | ||||||
|  |   for(int i=0;i<=pow_n;i++){ | ||||||
|  |     os << getCoeffNum(i) << "*x^" << i; | ||||||
|  |     if(i!=pow_n) os << " + "; | ||||||
|  |   } | ||||||
|  |   os << std::endl; | ||||||
|  |  | ||||||
|  |   os << "Denominator" << std::endl; | ||||||
|  |   for(int i=0;i<=pow_d;i++){ | ||||||
|  |     os << getCoeffDen(i) << "*x^" << i; | ||||||
|  |     if(i!=pow_d) os << " + "; | ||||||
|  |   } | ||||||
|  |   os << std::endl; | ||||||
|  |  | ||||||
|  |   //For a true minimax solution the errors should all be equal and the signs should oscillate +-+-+- etc | ||||||
|  |   int sign; | ||||||
|  |   os << "Errors at maxima: coordinate, error, (sign)" << std::endl; | ||||||
|  |   for(int i=0;i<neq+1;i++){  | ||||||
|  |     os << mm[i] << " " << getErr(mm[i],&sign) << " (" << sign << ")" << std::endl; | ||||||
|  |   } | ||||||
|  |  | ||||||
|  |   os << "Scan over range:" << std::endl; | ||||||
|  |   int npt = 60; | ||||||
|  |   bigfloat dlt = (apend - apstrt)/bigfloat(npt-1); | ||||||
|  |  | ||||||
|  |   for (bigfloat x=apstrt; x<=apend; x = x + dlt) { | ||||||
|  |     double f = evaluateFunc(x); | ||||||
|  |     double r = evaluateApprox(x); | ||||||
|  |     os<< x<<","<<r<<","<<f<<","<<r-f<<std::endl; | ||||||
|  |   } | ||||||
|  |   return; | ||||||
|  | } | ||||||
							
								
								
									
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							| @@ -0,0 +1,170 @@ | |||||||
|  | /* | ||||||
|  |   C.Kelly Jan 2020 based on implementation by M. Clark May 2005 | ||||||
|  |  | ||||||
|  |   AlgRemezGeneral is an implementation of the Remez algorithm for approximating an arbitrary function by a rational polynomial  | ||||||
|  |   It includes optional restriction to odd/even polynomials for the numerator and/or denominator | ||||||
|  | */ | ||||||
|  |  | ||||||
|  | #ifndef INCLUDED_ALG_REMEZ_GENERAL_H | ||||||
|  | #define INCLUDED_ALG_REMEZ_GENERAL_H | ||||||
|  |  | ||||||
|  | #include <stddef.h> | ||||||
|  | #include <Grid/GridStd.h> | ||||||
|  |  | ||||||
|  | #ifdef HAVE_LIBGMP | ||||||
|  | #include "bigfloat.h" | ||||||
|  | #else | ||||||
|  | #include "bigfloat_double.h" | ||||||
|  | #endif | ||||||
|  |  | ||||||
|  |  | ||||||
|  | class AlgRemezGeneral{ | ||||||
|  |  public: | ||||||
|  |   enum PolyType { Even, Odd, Full }; | ||||||
|  |  | ||||||
|  |  private: | ||||||
|  |  | ||||||
|  |   // In GSL-style, pass the function as a function pointer. Any data required to evaluate the function is passed in as a void pointer | ||||||
|  |   bigfloat (*f)(bigfloat x, void *data); | ||||||
|  |   void *data; | ||||||
|  |  | ||||||
|  |   // The approximation parameters | ||||||
|  |   std::vector<bigfloat> param; | ||||||
|  |   bigfloat norm; | ||||||
|  |  | ||||||
|  |   // The number of non-zero terms in the numerator and denominator | ||||||
|  |   int n, d; | ||||||
|  |   // The numerator and denominator degree (i.e.  the largest power) | ||||||
|  |   int pow_n, pow_d; | ||||||
|  |    | ||||||
|  |   // Specify if the numerator and/or denominator are odd/even polynomials | ||||||
|  |   PolyType num_type; | ||||||
|  |   PolyType den_type; | ||||||
|  |   std::vector<int> num_pows; //contains the mapping, with -1 if not present | ||||||
|  |   std::vector<int> den_pows; | ||||||
|  |  | ||||||
|  |   // The bounds of the approximation | ||||||
|  |   bigfloat apstrt, apwidt, apend; | ||||||
|  |  | ||||||
|  |   // Variables used to calculate the approximation | ||||||
|  |   int nd1, iter; | ||||||
|  |   std::vector<bigfloat> xx; | ||||||
|  |   std::vector<bigfloat> mm; | ||||||
|  |   std::vector<bigfloat> step; | ||||||
|  |  | ||||||
|  |   bigfloat delta, spread; | ||||||
|  |    | ||||||
|  |   // Variables used in search | ||||||
|  |   std::vector<bigfloat> yy; | ||||||
|  |  | ||||||
|  |   // Variables used in solving linear equations | ||||||
|  |   std::vector<bigfloat> A; | ||||||
|  |   std::vector<bigfloat> B; | ||||||
|  |   std::vector<int> IPS; | ||||||
|  |  | ||||||
|  |   // The number of equations we must solve at each iteration (n+d+1) | ||||||
|  |   int neq; | ||||||
|  |  | ||||||
|  |   // The precision of the GNU MP library | ||||||
|  |   long prec; | ||||||
|  |  | ||||||
|  |   // Initialize member variables associated with the polynomial's properties | ||||||
|  |   void setupPolyProperties(int num_degree, int den_degree, PolyType num_type_in, PolyType den_type_in); | ||||||
|  |  | ||||||
|  |   // Initial values of maximal and minmal errors | ||||||
|  |   void initialGuess(); | ||||||
|  |  | ||||||
|  |   // Initialise step sizes | ||||||
|  |   void stpini(); | ||||||
|  |  | ||||||
|  |   // Initialize the algorithm | ||||||
|  |   void reinitializeAlgorithm(); | ||||||
|  |  | ||||||
|  |   // Solve the equations | ||||||
|  |   void equations(); | ||||||
|  |  | ||||||
|  |   // Search for error maxima and minima | ||||||
|  |   void search();  | ||||||
|  |  | ||||||
|  |   // Calculate function required for the approximation | ||||||
|  |   inline bigfloat func(bigfloat x) const{ | ||||||
|  |     return f(x, data); | ||||||
|  |   } | ||||||
|  |  | ||||||
|  |   // Compute size and sign of the approximation error at x | ||||||
|  |   bigfloat getErr(bigfloat x, int *sign) const; | ||||||
|  |  | ||||||
|  |   // Solve the system AX=B   where X = param | ||||||
|  |   int simq(); | ||||||
|  |  | ||||||
|  |   // Evaluate the rational form P(x)/Q(x) using coefficients from the solution vector param | ||||||
|  |   bigfloat approx(bigfloat x) const; | ||||||
|  |  | ||||||
|  |  public: | ||||||
|  |    | ||||||
|  |   AlgRemezGeneral(double lower, double upper, long prec, | ||||||
|  | 		  bigfloat (*f)(bigfloat x, void *data), void *data); | ||||||
|  |  | ||||||
|  |   inline int getDegree(void) const{  | ||||||
|  |     assert(n==d); | ||||||
|  |     return n; | ||||||
|  |   } | ||||||
|  |   // Reset the bounds of the approximation | ||||||
|  |   inline void setBounds(double lower, double upper) { | ||||||
|  |     apstrt = lower; | ||||||
|  |     apend = upper; | ||||||
|  |     apwidt = apend - apstrt; | ||||||
|  |   } | ||||||
|  |  | ||||||
|  |   // Get the bounds of the approximation | ||||||
|  |   inline void getBounds(double &lower, double &upper) const{  | ||||||
|  |     lower=(double)apstrt; | ||||||
|  |     upper=(double)apend; | ||||||
|  |   } | ||||||
|  |  | ||||||
|  |   // Run the algorithm to generate the rational approximation | ||||||
|  |   double generateApprox(int num_degree, int den_degree,  | ||||||
|  | 			PolyType num_type, PolyType den_type, | ||||||
|  | 			const double tolerance = 1e-15, const int report_freq = 1000); | ||||||
|  |    | ||||||
|  |   inline double generateApprox(int num_degree, int den_degree,  | ||||||
|  | 			       const double tolerance = 1e-15, const int report_freq = 1000){ | ||||||
|  |     return generateApprox(num_degree, den_degree, Full, Full, tolerance, report_freq); | ||||||
|  |   } | ||||||
|  |    | ||||||
|  |   // Evaluate the rational form P(x)/Q(x) using coefficients from the | ||||||
|  |   // solution vector param | ||||||
|  |   inline double evaluateApprox(double x) const{ | ||||||
|  |     return (double)approx((bigfloat)x); | ||||||
|  |   } | ||||||
|  |  | ||||||
|  |   // Evaluate the rational form Q(x)/P(x) using coefficients from the solution vector param | ||||||
|  |   inline double evaluateInverseApprox(double x) const{ | ||||||
|  |     return 1.0/(double)approx((bigfloat)x); | ||||||
|  |   }   | ||||||
|  |  | ||||||
|  |   // Calculate function required for the approximation | ||||||
|  |   inline double evaluateFunc(double x) const{ | ||||||
|  |     return (double)func((bigfloat)x); | ||||||
|  |   } | ||||||
|  |  | ||||||
|  |   // Calculate inverse function required for the approximation | ||||||
|  |   inline double evaluateInverseFunc(double x) const{ | ||||||
|  |     return 1.0/(double)func((bigfloat)x); | ||||||
|  |   } | ||||||
|  |  | ||||||
|  |   // Dump csv of function, approx and error | ||||||
|  |   void csv(std::ostream &os = std::cout) const; | ||||||
|  |  | ||||||
|  |   // Get the coefficient of the term x^i in the numerator | ||||||
|  |   inline double getCoeffNum(const int i) const{     | ||||||
|  |     return num_pows[i] == -1 ? 0. : double(param[num_pows[i]]); | ||||||
|  |   } | ||||||
|  |   // Get the coefficient of the term x^i in the denominator | ||||||
|  |   inline double getCoeffDen(const int i) const{  | ||||||
|  |     if(i == pow_d) return 1.0; | ||||||
|  |     else return den_pows[i] == -1 ? 0. : double(param[den_pows[i]+n+1]);  | ||||||
|  |   } | ||||||
|  | }; | ||||||
|  |  | ||||||
|  | #endif | ||||||
							
								
								
									
										183
									
								
								Grid/algorithms/approx/ZMobius.cc
									
									
									
									
									
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										183
									
								
								Grid/algorithms/approx/ZMobius.cc
									
									
									
									
									
										Normal file
									
								
							| @@ -0,0 +1,183 @@ | |||||||
|  | /************************************************************************************* | ||||||
|  |  | ||||||
|  |     Grid physics library, www.github.com/paboyle/Grid  | ||||||
|  |  | ||||||
|  |     Source file: ./lib/algorithms/approx/ZMobius.cc | ||||||
|  |  | ||||||
|  |     Copyright (C) 2015 | ||||||
|  |  | ||||||
|  | Author: Christopher Kelly <ckelly@phys.columbia.edu> | ||||||
|  |  | ||||||
|  |     This program is free software; you can redistribute it and/or modify | ||||||
|  |     it under the terms of the GNU General Public License as published by | ||||||
|  |     the Free Software Foundation; either version 2 of the License, or | ||||||
|  |     (at your option) any later version. | ||||||
|  |  | ||||||
|  |     This program is distributed in the hope that it will be useful, | ||||||
|  |     but WITHOUT ANY WARRANTY; without even the implied warranty of | ||||||
|  |     MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the | ||||||
|  |     GNU General Public License for more details. | ||||||
|  |  | ||||||
|  |     You should have received a copy of the GNU General Public License along | ||||||
|  |     with this program; if not, write to the Free Software Foundation, Inc., | ||||||
|  |     51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. | ||||||
|  |  | ||||||
|  |     See the full license in the file "LICENSE" in the top level distribution directory | ||||||
|  | *************************************************************************************/ | ||||||
|  | /*  END LEGAL */ | ||||||
|  |  | ||||||
|  | #include <Grid/algorithms/approx/ZMobius.h> | ||||||
|  | #include <Grid/algorithms/approx/RemezGeneral.h> | ||||||
|  |  | ||||||
|  | NAMESPACE_BEGIN(Grid); | ||||||
|  | NAMESPACE_BEGIN(Approx); | ||||||
|  |  | ||||||
|  | //Compute the tanh approximation | ||||||
|  | inline double epsilonMobius(const double x, const std::vector<ComplexD> &w){ | ||||||
|  |   int Ls = w.size(); | ||||||
|  |  | ||||||
|  |   ComplexD fxp = 1., fmp = 1.; | ||||||
|  |   for(int i=0;i<Ls;i++){ | ||||||
|  |     fxp = fxp * ( w[i] + x ); | ||||||
|  |     fmp = fmp * ( w[i] - x ); | ||||||
|  |   } | ||||||
|  |   return ((fxp - fmp)/(fxp + fmp)).real(); | ||||||
|  | } | ||||||
|  | inline double epsilonMobius(const double x, const std::vector<RealD> &w){ | ||||||
|  |   int Ls = w.size(); | ||||||
|  |  | ||||||
|  |   double fxp = 1., fmp = 1.; | ||||||
|  |   for(int i=0;i<Ls;i++){ | ||||||
|  |     fxp = fxp * ( w[i] + x ); | ||||||
|  |     fmp = fmp * ( w[i] - x ); | ||||||
|  |   } | ||||||
|  |   return (fxp - fmp)/(fxp + fmp); | ||||||
|  | } | ||||||
|  |  | ||||||
|  |  | ||||||
|  |  | ||||||
|  | //Compute the tanh approximation in a form suitable for the Remez | ||||||
|  | bigfloat epsilonMobius(bigfloat x, void* data){ | ||||||
|  |   const std::vector<RealD> &omega = *( (std::vector<RealD> const*)data ); | ||||||
|  |   bigfloat fxp(1.0); | ||||||
|  |   bigfloat fmp(1.0); | ||||||
|  |  | ||||||
|  |   for(int i=0;i<omega.size();i++){ | ||||||
|  |     fxp = fxp * ( bigfloat(omega[i]) + x); | ||||||
|  |     fmp = fmp * ( bigfloat(omega[i]) - x); | ||||||
|  |   } | ||||||
|  |   return (fxp - fmp)/(fxp + fmp); | ||||||
|  | } | ||||||
|  |  | ||||||
|  | //Compute the Zmobius Omega parameters suitable for eigenvalue range   -lambda_bound <= lambda <= lambda_bound | ||||||
|  | //Note omega_i = 1/(b_i + c_i)   where b_i and c_i are the Mobius parameters | ||||||
|  | void computeZmobiusOmega(std::vector<ComplexD> &omega_out, const int Ls_out, | ||||||
|  | 			 const std::vector<RealD> &omega_in, const int Ls_in, | ||||||
|  | 			 const RealD lambda_bound){ | ||||||
|  |   assert(omega_in.size() == Ls_in); | ||||||
|  |   omega_out.resize(Ls_out); | ||||||
|  |  | ||||||
|  |   //Use the Remez algorithm to generate the appropriate rational polynomial | ||||||
|  |   //For odd polynomial, to satisfy Haar condition must take either positive or negative half of range (cf https://arxiv.org/pdf/0803.0439.pdf page 6)   | ||||||
|  |   AlgRemezGeneral remez(0, lambda_bound, 64, &epsilonMobius, (void*)&omega_in);  | ||||||
|  |   remez.generateApprox(Ls_out-1, Ls_out,AlgRemezGeneral::Odd, AlgRemezGeneral::Even, 1e-15, 100); | ||||||
|  |   remez.csv(std::cout); | ||||||
|  |  | ||||||
|  |   //The rational approximation has the form  [ f(x) - f(-x) ] / [ f(x) + f(-x) ]  where  f(x) = \Prod_{i=0}^{L_s-1} ( \omega_i + x ) | ||||||
|  |   //cf https://academiccommons.columbia.edu/doi/10.7916/D8T72HD7  pg 102 | ||||||
|  |   //omega_i are therefore the negative of the complex roots of f(x) | ||||||
|  |  | ||||||
|  |   //We can find the roots by recognizing that the eigenvalues of a matrix A are the roots of the characteristic polynomial | ||||||
|  |   // \rho(\lambda) = det( A - \lambda I )    where I is the unit matrix | ||||||
|  |   //The matrix whose characteristic polynomial is an arbitrary monic polynomial a0 + a1 x + a2 x^2 + ... x^n   is the companion matrix  | ||||||
|  |   // A = | 0    1   0    0 0 .... 0 | | ||||||
|  |   //     | 0    0   1    0 0 .... 0 | | ||||||
|  |   //     | :    :   :    : :      : | | ||||||
|  |   //     | 0    0   0    0 0      1 | ||||||
|  |   //     | -a0 -a1 -a2  ...  ... -an| | ||||||
|  |  | ||||||
|  |  | ||||||
|  |   //Note the Remez defines the largest power to have unit coefficient | ||||||
|  |   std::vector<RealD> coeffs(Ls_out+1); | ||||||
|  |   for(int i=0;i<Ls_out+1;i+=2) coeffs[i] = coeffs[i] = remez.getCoeffDen(i); //even powers | ||||||
|  |   for(int i=1;i<Ls_out+1;i+=2) coeffs[i] = coeffs[i] = remez.getCoeffNum(i); //odd powers | ||||||
|  |  | ||||||
|  |   std::vector<std::complex<RealD> > roots(Ls_out); | ||||||
|  |  | ||||||
|  |   //Form the companion matrix | ||||||
|  |   Eigen::MatrixXd compn(Ls_out,Ls_out); | ||||||
|  |   for(int i=0;i<Ls_out-1;i++) compn(i,0) = 0.; | ||||||
|  |   compn(Ls_out - 1, 0) = -coeffs[0]; | ||||||
|  |    | ||||||
|  |   for(int j=1;j<Ls_out;j++){ | ||||||
|  |     for(int i=0;i<Ls_out-1;i++) compn(i,j) = i == j-1 ? 1. : 0.; | ||||||
|  |     compn(Ls_out - 1, j) = -coeffs[j]; | ||||||
|  |   } | ||||||
|  |  | ||||||
|  |   //Eigensolve | ||||||
|  |   Eigen::EigenSolver<Eigen::MatrixXd> slv(compn, false); | ||||||
|  |  | ||||||
|  |   const auto & ev = slv.eigenvalues(); | ||||||
|  |   for(int i=0;i<Ls_out;i++) | ||||||
|  |     omega_out[i] = -ev(i); | ||||||
|  |  | ||||||
|  |   //Sort ascending (smallest at start of vector!) | ||||||
|  |   std::sort(omega_out.begin(), omega_out.end(),  | ||||||
|  | 	    [&](const ComplexD &a, const ComplexD &b){ return a.real() < b.real() || (a.real() == b.real() && a.imag() < b.imag()); }); | ||||||
|  |  | ||||||
|  |   //McGlynn thesis pg 122 suggest improved iteration counts if magnitude of omega diminishes towards the center of the 5th dimension | ||||||
|  |   std::vector<ComplexD> omega_tmp = omega_out; | ||||||
|  |   int s_low=0, s_high=Ls_out-1, ss=0; | ||||||
|  |   for(int s_from = Ls_out-1; s_from >= 0; s_from--){ //loop from largest omega | ||||||
|  |     int s_to; | ||||||
|  |     if(ss % 2 == 0){ | ||||||
|  |       s_to = s_low++; | ||||||
|  |     }else{ | ||||||
|  |       s_to = s_high--; | ||||||
|  |     } | ||||||
|  |     omega_out[s_to] = omega_tmp[s_from]; | ||||||
|  |     ++ss; | ||||||
|  |   } | ||||||
|  |    | ||||||
|  |   std::cout << "Resulting omega_i:" << std::endl;   | ||||||
|  |   for(int i=0;i<Ls_out;i++) | ||||||
|  |     std::cout << omega_out[i] << std::endl; | ||||||
|  |  | ||||||
|  |   std::cout << "Test result matches the approximate polynomial found by the Remez" << std::endl; | ||||||
|  |   std::cout << "<x> <remez approx> <poly approx> <diff poly approx remez approx> <exact> <diff poly approx exact>\n"; | ||||||
|  |    | ||||||
|  |   int npt = 60; | ||||||
|  |   double dlt = lambda_bound/double(npt-1); | ||||||
|  |  | ||||||
|  |   for (int i =0; i<npt; i++){ | ||||||
|  |     double x = i*dlt; | ||||||
|  |     double r = remez.evaluateApprox(x); | ||||||
|  |     double p = epsilonMobius(x, omega_out); | ||||||
|  |     double e = epsilonMobius(x, omega_in); | ||||||
|  |  | ||||||
|  |     std::cout << x<< " " << r << " " << p <<" " <<r-p << " " << e << " " << e-p << std::endl; | ||||||
|  |   } | ||||||
|  |  | ||||||
|  | } | ||||||
|  |    | ||||||
|  | //mobius_param = b+c   with b-c=1 | ||||||
|  | void computeZmobiusOmega(std::vector<ComplexD> &omega_out, const int Ls_out, const RealD mobius_param, const int Ls_in, const RealD lambda_bound){ | ||||||
|  |   std::vector<RealD> omega_in(Ls_in, 1./mobius_param); | ||||||
|  |   computeZmobiusOmega(omega_out, Ls_out, omega_in, Ls_in, lambda_bound); | ||||||
|  | } | ||||||
|  |  | ||||||
|  | //ZMobius class takes  gamma_i = (b+c) omega_i as its input, where b, c are factored out | ||||||
|  | void computeZmobiusGamma(std::vector<ComplexD> &gamma_out,  | ||||||
|  | 			 const RealD mobius_param_out, const int Ls_out,  | ||||||
|  | 			 const RealD mobius_param_in, const int Ls_in, | ||||||
|  | 			 const RealD lambda_bound){ | ||||||
|  |   computeZmobiusOmega(gamma_out, Ls_out, mobius_param_in, Ls_in, lambda_bound); | ||||||
|  |   for(int i=0;i<Ls_out;i++) gamma_out[i] = gamma_out[i] * mobius_param_out; | ||||||
|  | } | ||||||
|  | //Assumes mobius_param_out == mobius_param_in | ||||||
|  | void computeZmobiusGamma(std::vector<ComplexD> &gamma_out, const int Ls_out, const RealD mobius_param, const int Ls_in, const RealD lambda_bound){ | ||||||
|  |   computeZmobiusGamma(gamma_out, mobius_param, Ls_out, mobius_param, Ls_in, lambda_bound); | ||||||
|  | } | ||||||
|  |  | ||||||
|  | NAMESPACE_END(Approx); | ||||||
|  | NAMESPACE_END(Grid); | ||||||
							
								
								
									
										57
									
								
								Grid/algorithms/approx/ZMobius.h
									
									
									
									
									
										Normal file
									
								
							
							
						
						
									
										57
									
								
								Grid/algorithms/approx/ZMobius.h
									
									
									
									
									
										Normal file
									
								
							| @@ -0,0 +1,57 @@ | |||||||
|  | /************************************************************************************* | ||||||
|  |  | ||||||
|  |     Grid physics library, www.github.com/paboyle/Grid  | ||||||
|  |  | ||||||
|  |     Source file: ./lib/algorithms/approx/ZMobius.h | ||||||
|  |  | ||||||
|  |     Copyright (C) 2015 | ||||||
|  |  | ||||||
|  | Author: Christopher Kelly <ckelly@phys.columbia.edu> | ||||||
|  |  | ||||||
|  |     This program is free software; you can redistribute it and/or modify | ||||||
|  |     it under the terms of the GNU General Public License as published by | ||||||
|  |     the Free Software Foundation; either version 2 of the License, or | ||||||
|  |     (at your option) any later version. | ||||||
|  |  | ||||||
|  |     This program is distributed in the hope that it will be useful, | ||||||
|  |     but WITHOUT ANY WARRANTY; without even the implied warranty of | ||||||
|  |     MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the | ||||||
|  |     GNU General Public License for more details. | ||||||
|  |  | ||||||
|  |     You should have received a copy of the GNU General Public License along | ||||||
|  |     with this program; if not, write to the Free Software Foundation, Inc., | ||||||
|  |     51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. | ||||||
|  |  | ||||||
|  |     See the full license in the file "LICENSE" in the top level distribution directory | ||||||
|  | *************************************************************************************/ | ||||||
|  | /*  END LEGAL */ | ||||||
|  | #ifndef GRID_ZMOBIUS_APPROX_H | ||||||
|  | #define GRID_ZMOBIUS_APPROX_H | ||||||
|  |  | ||||||
|  | #include <Grid/GridCore.h> | ||||||
|  |  | ||||||
|  | NAMESPACE_BEGIN(Grid); | ||||||
|  | NAMESPACE_BEGIN(Approx); | ||||||
|  |  | ||||||
|  | //Compute the Zmobius Omega parameters suitable for eigenvalue range   -lambda_bound <= lambda <= lambda_bound | ||||||
|  | //Note omega_i = 1/(b_i + c_i)   where b_i and c_i are the Mobius parameters | ||||||
|  | void computeZmobiusOmega(std::vector<ComplexD> &omega_out, const int Ls_out, | ||||||
|  | 			 const std::vector<RealD> &omega_in, const int Ls_in, | ||||||
|  | 			 const RealD lambda_bound); | ||||||
|  |    | ||||||
|  | //mobius_param = b+c   with b-c=1 | ||||||
|  | void computeZmobiusOmega(std::vector<ComplexD> &omega_out, const int Ls_out, const RealD mobius_param, const int Ls_in, const RealD lambda_bound); | ||||||
|  |  | ||||||
|  | //ZMobius class takes  gamma_i = (b+c) omega_i as its input, where b, c are factored out | ||||||
|  | void computeZmobiusGamma(std::vector<ComplexD> &gamma_out,  | ||||||
|  | 			 const RealD mobius_param_out, const int Ls_out,  | ||||||
|  | 			 const RealD mobius_param_in, const int Ls_in, | ||||||
|  | 			 const RealD lambda_bound); | ||||||
|  |  | ||||||
|  | //Assumes mobius_param_out == mobius_param_in | ||||||
|  | void computeZmobiusGamma(std::vector<ComplexD> &gamma_out, const int Ls_out, const RealD mobius_param, const int Ls_in, const RealD lambda_bound); | ||||||
|  |  | ||||||
|  | NAMESPACE_END(Approx); | ||||||
|  | NAMESPACE_END(Grid); | ||||||
|  |  | ||||||
|  | #endif | ||||||
| @@ -58,8 +58,8 @@ | |||||||
| 
 | 
 | ||||||
| /* Compute the partial fraction expansion coefficients (alpha) from the
 | /* Compute the partial fraction expansion coefficients (alpha) from the
 | ||||||
|  * factored form */ |  * factored form */ | ||||||
| namespace Grid { | NAMESPACE_BEGIN(Grid); | ||||||
| namespace Approx { | NAMESPACE_BEGIN(Approx); | ||||||
| 
 | 
 | ||||||
| static void construct_partfrac(izd *z) { | static void construct_partfrac(izd *z) { | ||||||
|   int dn = z -> dn, dd = z -> dd, type = z -> type; |   int dn = z -> dn, dd = z -> dd, type = z -> type; | ||||||
| @@ -516,7 +516,9 @@ zolotarev_data* higham(PRECISION epsilon, int n) { | |||||||
|   free(d); |   free(d); | ||||||
|   return zd; |   return zd; | ||||||
| } | } | ||||||
| }} | 
 | ||||||
|  | NAMESPACE_END(Approx); | ||||||
|  | NAMESPACE_END(Grid); | ||||||
| 
 | 
 | ||||||
| #ifdef TEST | #ifdef TEST | ||||||
| 
 | 
 | ||||||
| @@ -585,6 +587,7 @@ static PRECISION zolotarev_cayley_eval(PRECISION x, zolotarev_data* rdata) { | |||||||
|   return (ONE - T) / (ONE + T); |   return (ONE - T) / (ONE + T); | ||||||
| } | } | ||||||
| 
 | 
 | ||||||
|  | 
 | ||||||
| /* Test program. Apart from printing out the parameters for R(x) it produces
 | /* Test program. Apart from printing out the parameters for R(x) it produces
 | ||||||
|  * the following data files for plotting (unless NPLOT is defined): |  * the following data files for plotting (unless NPLOT is defined): | ||||||
|  * |  * | ||||||
| @@ -723,5 +726,5 @@ int main(int argc, char** argv) { | |||||||
|   return EXIT_SUCCESS; |   return EXIT_SUCCESS; | ||||||
| } | } | ||||||
| 
 | 
 | ||||||
| 
 |  | ||||||
| #endif /* TEST */ | #endif /* TEST */ | ||||||
|  | 
 | ||||||
| @@ -1,13 +1,13 @@ | |||||||
| /* -*- Mode: C; comment-column: 22; fill-column: 79; -*- */ | /* -*- Mode: C; comment-column: 22; fill-column: 79; -*- */ | ||||||
| 
 | 
 | ||||||
| #ifdef __cplusplus | #ifdef __cplusplus | ||||||
| namespace Grid { | #include <Grid/Namespace.h> | ||||||
| namespace Approx { | NAMESPACE_BEGIN(Grid); | ||||||
|  | NAMESPACE_BEGIN(Approx); | ||||||
| #endif | #endif | ||||||
| 
 | 
 | ||||||
| #define HVERSION Header Time-stamp: <14-OCT-2004 09:26:51.00 adk@MISSCONTRARY> | #define HVERSION Header Time-stamp: <14-OCT-2004 09:26:51.00 adk@MISSCONTRARY> | ||||||
| 
 | 
 | ||||||
| 
 |  | ||||||
| #ifndef ZOLOTAREV_INTERNAL | #ifndef ZOLOTAREV_INTERNAL | ||||||
| #ifndef PRECISION | #ifndef PRECISION | ||||||
| #define PRECISION double | #define PRECISION double | ||||||
| @@ -83,5 +83,6 @@ void zolotarev_free(zolotarev_data *zdata); | |||||||
| #endif | #endif | ||||||
| 
 | 
 | ||||||
| #ifdef __cplusplus | #ifdef __cplusplus | ||||||
| }} | NAMESPACE_END(Approx); | ||||||
|  | NAMESPACE_END(Grid); | ||||||
| #endif | #endif | ||||||
| @@ -10,10 +10,12 @@ | |||||||
| #ifndef INCLUDED_BIGFLOAT_H | #ifndef INCLUDED_BIGFLOAT_H | ||||||
| #define INCLUDED_BIGFLOAT_H | #define INCLUDED_BIGFLOAT_H | ||||||
| 
 | 
 | ||||||
| 
 | #define __GMP_WITHIN_CONFIGURE | ||||||
| #include <gmp.h> | #include <gmp.h> | ||||||
| #include <mpf2mpfr.h> | #include <mpf2mpfr.h> | ||||||
| #include <mpfr.h> | #include <mpfr.h> | ||||||
|  | #undef  __GMP_WITHIN_CONFIGURE | ||||||
|  | 
 | ||||||
| class bigfloat { | class bigfloat { | ||||||
| 
 | 
 | ||||||
| private: | private: | ||||||
| @@ -25,6 +25,10 @@ Author: Peter Boyle <paboyle@ph.ed.ac.uk> | |||||||
|     See the full license in the file "LICENSE" in the top level distribution directory |     See the full license in the file "LICENSE" in the top level distribution directory | ||||||
|     *************************************************************************************/ |     *************************************************************************************/ | ||||||
|     /*  END LEGAL */ |     /*  END LEGAL */ | ||||||
|  | 
 | ||||||
|  | #ifndef INCLUDED_BIGFLOAT_DOUBLE_H | ||||||
|  | #define INCLUDED_BIGFLOAT_DOUBLE_H | ||||||
|  | 
 | ||||||
| #include <math.h> | #include <math.h> | ||||||
| 
 | 
 | ||||||
| typedef double mfloat;  | typedef double mfloat;  | ||||||
| @@ -186,4 +190,6 @@ public: | |||||||
|   //  friend bigfloat& random(void);
 |   //  friend bigfloat& random(void);
 | ||||||
| }; | }; | ||||||
| 
 | 
 | ||||||
|  | #endif | ||||||
|  | 
 | ||||||
| 
 | 
 | ||||||
| @@ -90,8 +90,8 @@ class TwoLevelFlexiblePcg : public LinearFunction<Field> | |||||||
|   void operator() (const Field &src, Field &psi){ |   void operator() (const Field &src, Field &psi){ | ||||||
|   void operator() (const Field &src, Field &psi){ |   void operator() (const Field &src, Field &psi){ | ||||||
| 
 | 
 | ||||||
|     psi.checkerboard = src.checkerboard; |     psi.Checkerboard() = src.Checkerboard(); | ||||||
|     grid             = src._grid; |     grid             = src.Grid(); | ||||||
| 
 | 
 | ||||||
|     RealD f; |     RealD f; | ||||||
|     RealD rtzp,rtz,a,d,b; |     RealD rtzp,rtz,a,d,b; | ||||||
							
								
								
									
										234
									
								
								Grid/algorithms/iterative/BiCGSTAB.h
									
									
									
									
									
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								Grid/algorithms/iterative/BiCGSTAB.h
									
									
									
									
									
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							| @@ -0,0 +1,234 @@ | |||||||
|  | /************************************************************************************* | ||||||
|  |  | ||||||
|  | Grid physics library, www.github.com/paboyle/Grid | ||||||
|  |  | ||||||
|  | Source file: ./lib/algorithms/iterative/BiCGSTAB.h | ||||||
|  |  | ||||||
|  | Copyright (C) 2015 | ||||||
|  |  | ||||||
|  | Author: Azusa Yamaguchi <ayamaguc@staffmail.ed.ac.uk> | ||||||
|  | Author: Peter Boyle <paboyle@ph.ed.ac.uk> | ||||||
|  | Author: paboyle <paboyle@ph.ed.ac.uk> | ||||||
|  | Author: juettner <juettner@soton.ac.uk> | ||||||
|  | Author: David Murphy <djmurphy@mit.edu> | ||||||
|  |  | ||||||
|  | This program is free software; you can redistribute it and/or modify | ||||||
|  | it under the terms of the GNU General Public License as published by | ||||||
|  | the Free Software Foundation; either version 2 of the License, or | ||||||
|  | (at your option) any later version. | ||||||
|  |  | ||||||
|  | This program is distributed in the hope that it will be useful, | ||||||
|  | but WITHOUT ANY WARRANTY; without even the implied warranty of | ||||||
|  | MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the | ||||||
|  | GNU General Public License for more details. | ||||||
|  |  | ||||||
|  | You should have received a copy of the GNU General Public License along | ||||||
|  | with this program; if not, write to the Free Software Foundation, Inc., | ||||||
|  | 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. | ||||||
|  |  | ||||||
|  | See the full license in the file "LICENSE" in the top level distribution | ||||||
|  | directory | ||||||
|  | *************************************************************************************/ | ||||||
|  | /*  END LEGAL */ | ||||||
|  |  | ||||||
|  | #ifndef GRID_BICGSTAB_H | ||||||
|  | #define GRID_BICGSTAB_H | ||||||
|  |  | ||||||
|  | NAMESPACE_BEGIN(Grid); | ||||||
|  |  | ||||||
|  | ///////////////////////////////////////////////////////////// | ||||||
|  | // Base classes for iterative processes based on operators | ||||||
|  | // single input vec, single output vec. | ||||||
|  | ///////////////////////////////////////////////////////////// | ||||||
|  |  | ||||||
|  | template <class Field> | ||||||
|  | class BiCGSTAB : public OperatorFunction<Field>  | ||||||
|  | { | ||||||
|  |   public: | ||||||
|  |     using OperatorFunction<Field>::operator(); | ||||||
|  |      | ||||||
|  |     bool ErrorOnNoConverge;  // throw an assert when the CG fails to converge. | ||||||
|  |                              // Defaults true. | ||||||
|  |     RealD Tolerance; | ||||||
|  |     Integer MaxIterations; | ||||||
|  |     Integer IterationsToComplete; //Number of iterations the CG took to finish. Filled in upon completion | ||||||
|  |    | ||||||
|  |     BiCGSTAB(RealD tol, Integer maxit, bool err_on_no_conv = true) :  | ||||||
|  |       Tolerance(tol), MaxIterations(maxit), ErrorOnNoConverge(err_on_no_conv){}; | ||||||
|  |  | ||||||
|  |     void operator()(LinearOperatorBase<Field>& Linop, const Field& src, Field& psi)  | ||||||
|  |     { | ||||||
|  |       psi.Checkerboard() = src.Checkerboard(); | ||||||
|  |       conformable(psi, src); | ||||||
|  |  | ||||||
|  |       RealD cp(0), rho(1), rho_prev(0), alpha(1), beta(0), omega(1); | ||||||
|  |       RealD a(0), bo(0), b(0), ssq(0); | ||||||
|  |  | ||||||
|  |       Field p(src); | ||||||
|  |       Field r(src); | ||||||
|  |       Field rhat(src); | ||||||
|  |       Field v(src); | ||||||
|  |       Field s(src); | ||||||
|  |       Field t(src); | ||||||
|  |       Field h(src); | ||||||
|  |  | ||||||
|  |       v = Zero(); | ||||||
|  |       p = Zero(); | ||||||
|  |  | ||||||
|  |       // Initial residual computation & set up | ||||||
|  |       RealD guess = norm2(psi); | ||||||
|  |       assert(std::isnan(guess) == 0); | ||||||
|  |      | ||||||
|  |       Linop.Op(psi, v); | ||||||
|  |       b = norm2(v); | ||||||
|  |  | ||||||
|  |       r = src - v; | ||||||
|  |       rhat = r; | ||||||
|  |       a = norm2(r); | ||||||
|  |       ssq = norm2(src); | ||||||
|  |  | ||||||
|  |       std::cout << GridLogIterative << std::setprecision(8) << "BiCGSTAB: guess " << guess << std::endl; | ||||||
|  |       std::cout << GridLogIterative << std::setprecision(8) << "BiCGSTAB:   src " << ssq << std::endl; | ||||||
|  |       std::cout << GridLogIterative << std::setprecision(8) << "BiCGSTAB:    mp " << b << std::endl; | ||||||
|  |       std::cout << GridLogIterative << std::setprecision(8) << "BiCGSTAB:     r " << a << std::endl; | ||||||
|  |  | ||||||
|  |       RealD rsq = Tolerance * Tolerance * ssq; | ||||||
|  |  | ||||||
|  |       // Check if guess is really REALLY good :) | ||||||
|  |       if(a <= rsq){ return; } | ||||||
|  |  | ||||||
|  |       std::cout << GridLogIterative << std::setprecision(8) << "BiCGSTAB: k=0 residual " << a << " target " << rsq << std::endl; | ||||||
|  |  | ||||||
|  |       GridStopWatch LinalgTimer; | ||||||
|  |       GridStopWatch InnerTimer; | ||||||
|  |       GridStopWatch AxpyNormTimer; | ||||||
|  |       GridStopWatch LinearCombTimer; | ||||||
|  |       GridStopWatch MatrixTimer; | ||||||
|  |       GridStopWatch SolverTimer; | ||||||
|  |  | ||||||
|  |       SolverTimer.Start(); | ||||||
|  |       int k; | ||||||
|  |       for (k = 1; k <= MaxIterations; k++)  | ||||||
|  |       { | ||||||
|  |         rho_prev = rho; | ||||||
|  |  | ||||||
|  |         LinalgTimer.Start(); | ||||||
|  |         InnerTimer.Start(); | ||||||
|  |         ComplexD Crho  = innerProduct(rhat,r); | ||||||
|  |         InnerTimer.Stop(); | ||||||
|  |         rho = Crho.real(); | ||||||
|  |  | ||||||
|  |         beta = (rho / rho_prev) * (alpha / omega); | ||||||
|  |  | ||||||
|  |         LinearCombTimer.Start(); | ||||||
|  |         bo = beta * omega; | ||||||
|  | 	{ | ||||||
|  | 	  autoView( p_v , p, AcceleratorWrite); | ||||||
|  | 	  autoView( r_v , r, AcceleratorRead); | ||||||
|  | 	  autoView( v_v , v, AcceleratorRead); | ||||||
|  | 	  accelerator_for(ss, p_v.size(), Field::vector_object::Nsimd(),{ | ||||||
|  | 	      coalescedWrite(p_v[ss], beta*p_v(ss) - bo*v_v(ss) + r_v(ss)); | ||||||
|  | 	    }); | ||||||
|  | 	} | ||||||
|  |         LinearCombTimer.Stop(); | ||||||
|  |         LinalgTimer.Stop(); | ||||||
|  |  | ||||||
|  |         MatrixTimer.Start(); | ||||||
|  |         Linop.Op(p,v); | ||||||
|  |         MatrixTimer.Stop(); | ||||||
|  |  | ||||||
|  |         LinalgTimer.Start(); | ||||||
|  |         InnerTimer.Start(); | ||||||
|  |         ComplexD Calpha = innerProduct(rhat,v); | ||||||
|  |         InnerTimer.Stop(); | ||||||
|  |         alpha = rho / Calpha.real(); | ||||||
|  |  | ||||||
|  |         LinearCombTimer.Start(); | ||||||
|  | 	{ | ||||||
|  | 	  autoView( p_v , p, AcceleratorRead); | ||||||
|  | 	  autoView( r_v , r, AcceleratorRead); | ||||||
|  | 	  autoView( v_v , v, AcceleratorRead); | ||||||
|  | 	  autoView( psi_v,psi, AcceleratorRead); | ||||||
|  | 	  autoView( h_v  ,  h, AcceleratorWrite); | ||||||
|  | 	  autoView( s_v  ,  s, AcceleratorWrite); | ||||||
|  | 	  accelerator_for(ss, h_v.size(), Field::vector_object::Nsimd(),{ | ||||||
|  | 	      coalescedWrite(h_v[ss], alpha*p_v(ss) + psi_v(ss)); | ||||||
|  | 	    }); | ||||||
|  | 	  accelerator_for(ss, s_v.size(), Field::vector_object::Nsimd(),{ | ||||||
|  | 	      coalescedWrite(s_v[ss], -alpha*v_v(ss) + r_v(ss)); | ||||||
|  |  	  }); | ||||||
|  |         } | ||||||
|  |         LinearCombTimer.Stop(); | ||||||
|  |         LinalgTimer.Stop(); | ||||||
|  |  | ||||||
|  |         MatrixTimer.Start(); | ||||||
|  |         Linop.Op(s,t); | ||||||
|  |         MatrixTimer.Stop(); | ||||||
|  |  | ||||||
|  |         LinalgTimer.Start(); | ||||||
|  |         InnerTimer.Start(); | ||||||
|  |         ComplexD Comega = innerProduct(t,s); | ||||||
|  |         InnerTimer.Stop(); | ||||||
|  |         omega = Comega.real() / norm2(t); | ||||||
|  |  | ||||||
|  |         LinearCombTimer.Start(); | ||||||
|  | 	{ | ||||||
|  | 	  autoView( psi_v,psi, AcceleratorWrite); | ||||||
|  | 	  autoView( r_v , r, AcceleratorWrite); | ||||||
|  | 	  autoView( h_v , h, AcceleratorRead); | ||||||
|  | 	  autoView( s_v , s, AcceleratorRead); | ||||||
|  | 	  autoView( t_v , t, AcceleratorRead); | ||||||
|  | 	  accelerator_for(ss, psi_v.size(), Field::vector_object::Nsimd(),{ | ||||||
|  | 	      coalescedWrite(psi_v[ss], h_v(ss) + omega * s_v(ss)); | ||||||
|  | 	      coalescedWrite(r_v[ss], -omega * t_v(ss) + s_v(ss)); | ||||||
|  | 	    }); | ||||||
|  | 	} | ||||||
|  |         LinearCombTimer.Stop(); | ||||||
|  | 	 | ||||||
|  |         cp = norm2(r); | ||||||
|  |         LinalgTimer.Stop(); | ||||||
|  |  | ||||||
|  |         std::cout << GridLogIterative << "BiCGSTAB: Iteration " << k << " residual " << sqrt(cp/ssq) << " target " << Tolerance << std::endl; | ||||||
|  |  | ||||||
|  |         // Stopping condition | ||||||
|  |         if(cp <= rsq)  | ||||||
|  |         { | ||||||
|  |           SolverTimer.Stop(); | ||||||
|  |           Linop.Op(psi, v); | ||||||
|  |           p = v - src; | ||||||
|  |  | ||||||
|  |           RealD srcnorm = sqrt(norm2(src)); | ||||||
|  |           RealD resnorm = sqrt(norm2(p)); | ||||||
|  |           RealD true_residual = resnorm / srcnorm; | ||||||
|  |  | ||||||
|  |           std::cout << GridLogMessage << "BiCGSTAB Converged on iteration " << k << std::endl; | ||||||
|  |           std::cout << GridLogMessage << "\tComputed residual " << sqrt(cp/ssq) << std::endl; | ||||||
|  |           std::cout << GridLogMessage << "\tTrue residual " << true_residual << std::endl; | ||||||
|  |           std::cout << GridLogMessage << "\tTarget " << Tolerance << std::endl; | ||||||
|  |  | ||||||
|  |           std::cout << GridLogMessage << "Time breakdown " << std::endl; | ||||||
|  |           std::cout << GridLogMessage << "\tElapsed    " << SolverTimer.Elapsed() << std::endl; | ||||||
|  |           std::cout << GridLogMessage << "\tMatrix     " << MatrixTimer.Elapsed() << std::endl; | ||||||
|  |           std::cout << GridLogMessage << "\tLinalg     " << LinalgTimer.Elapsed() << std::endl; | ||||||
|  |           std::cout << GridLogMessage << "\tInner      " << InnerTimer.Elapsed() << std::endl; | ||||||
|  |           std::cout << GridLogMessage << "\tAxpyNorm   " << AxpyNormTimer.Elapsed() << std::endl; | ||||||
|  |           std::cout << GridLogMessage << "\tLinearComb " << LinearCombTimer.Elapsed() << std::endl; | ||||||
|  |  | ||||||
|  |           if(ErrorOnNoConverge){ assert(true_residual / Tolerance < 10000.0); } | ||||||
|  |  | ||||||
|  |           IterationsToComplete = k;	 | ||||||
|  |  | ||||||
|  |           return; | ||||||
|  |         } | ||||||
|  |       } | ||||||
|  |        | ||||||
|  |       std::cout << GridLogMessage << "BiCGSTAB did NOT converge" << std::endl; | ||||||
|  |  | ||||||
|  |       if(ErrorOnNoConverge){ assert(0); } | ||||||
|  |       IterationsToComplete = k; | ||||||
|  |     } | ||||||
|  | }; | ||||||
|  |  | ||||||
|  | NAMESPACE_END(Grid); | ||||||
|  |  | ||||||
|  | #endif | ||||||
							
								
								
									
										159
									
								
								Grid/algorithms/iterative/BiCGSTABMixedPrec.h
									
									
									
									
									
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										159
									
								
								Grid/algorithms/iterative/BiCGSTABMixedPrec.h
									
									
									
									
									
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							| @@ -0,0 +1,159 @@ | |||||||
|  | /************************************************************************************* | ||||||
|  |  | ||||||
|  | Grid physics library, www.github.com/paboyle/Grid  | ||||||
|  |  | ||||||
|  | Source file: ./lib/algorithms/iterative/BiCGSTABMixedPrec.h | ||||||
|  |  | ||||||
|  | Copyright (C) 2015 | ||||||
|  |  | ||||||
|  | Author: Christopher Kelly <ckelly@phys.columbia.edu> | ||||||
|  | Author: David Murphy <djmurphy@mit.edu> | ||||||
|  |  | ||||||
|  | This program is free software; you can redistribute it and/or modify | ||||||
|  | it under the terms of the GNU General Public License as published by | ||||||
|  | the Free Software Foundation; either version 2 of the License, or | ||||||
|  | (at your option) any later version. | ||||||
|  |  | ||||||
|  | This program is distributed in the hope that it will be useful, | ||||||
|  | but WITHOUT ANY WARRANTY; without even the implied warranty of | ||||||
|  | MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the | ||||||
|  | GNU General Public License for more details. | ||||||
|  |  | ||||||
|  | You should have received a copy of the GNU General Public License along | ||||||
|  | with this program; if not, write to the Free Software Foundation, Inc., | ||||||
|  | 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. | ||||||
|  |  | ||||||
|  | See the full license in the file "LICENSE" in the top level distribution directory | ||||||
|  | *************************************************************************************/ | ||||||
|  | /*  END LEGAL */ | ||||||
|  |  | ||||||
|  | #ifndef GRID_BICGSTAB_MIXED_PREC_H | ||||||
|  | #define GRID_BICGSTAB_MIXED_PREC_H | ||||||
|  |  | ||||||
|  | NAMESPACE_BEGIN(Grid); | ||||||
|  |  | ||||||
|  | // Mixed precision restarted defect correction BiCGSTAB | ||||||
|  | template<class FieldD, class FieldF, typename std::enable_if< getPrecision<FieldD>::value == 2, int>::type = 0, typename std::enable_if< getPrecision<FieldF>::value == 1, int>::type = 0>  | ||||||
|  | class MixedPrecisionBiCGSTAB : public LinearFunction<FieldD>  | ||||||
|  | { | ||||||
|  |   public: | ||||||
|  |     using LinearFunction<FieldD>::operator(); | ||||||
|  |     RealD   Tolerance; | ||||||
|  |     RealD   InnerTolerance; // Initial tolerance for inner CG. Defaults to Tolerance but can be changed | ||||||
|  |     Integer MaxInnerIterations; | ||||||
|  |     Integer MaxOuterIterations; | ||||||
|  |     GridBase* SinglePrecGrid; // Grid for single-precision fields | ||||||
|  |     RealD OuterLoopNormMult; // Stop the outer loop and move to a final double prec solve when the residual is OuterLoopNormMult * Tolerance | ||||||
|  |     LinearOperatorBase<FieldF> &Linop_f; | ||||||
|  |     LinearOperatorBase<FieldD> &Linop_d; | ||||||
|  |  | ||||||
|  |     Integer TotalInnerIterations; //Number of inner CG iterations | ||||||
|  |     Integer TotalOuterIterations; //Number of restarts | ||||||
|  |     Integer TotalFinalStepIterations; //Number of CG iterations in final patch-up step | ||||||
|  |  | ||||||
|  |     //Option to speed up *inner single precision* solves using a LinearFunction that produces a guess | ||||||
|  |     LinearFunction<FieldF> *guesser; | ||||||
|  |      | ||||||
|  |     MixedPrecisionBiCGSTAB(RealD tol, Integer maxinnerit, Integer maxouterit, GridBase* _sp_grid,  | ||||||
|  |         LinearOperatorBase<FieldF>& _Linop_f, LinearOperatorBase<FieldD>& _Linop_d) :  | ||||||
|  |       Linop_f(_Linop_f), Linop_d(_Linop_d), Tolerance(tol), InnerTolerance(tol), MaxInnerIterations(maxinnerit),  | ||||||
|  |       MaxOuterIterations(maxouterit), SinglePrecGrid(_sp_grid), OuterLoopNormMult(100.), guesser(NULL) {}; | ||||||
|  |  | ||||||
|  |     void useGuesser(LinearFunction<FieldF>& g){ | ||||||
|  |       guesser = &g; | ||||||
|  |     } | ||||||
|  |    | ||||||
|  |     void operator() (const FieldD& src_d_in, FieldD& sol_d) | ||||||
|  |     { | ||||||
|  |       TotalInnerIterations = 0; | ||||||
|  |      | ||||||
|  |       GridStopWatch TotalTimer; | ||||||
|  |       TotalTimer.Start(); | ||||||
|  |        | ||||||
|  |       int cb = src_d_in.Checkerboard(); | ||||||
|  |       sol_d.Checkerboard() = cb; | ||||||
|  |        | ||||||
|  |       RealD src_norm = norm2(src_d_in); | ||||||
|  |       RealD stop = src_norm * Tolerance*Tolerance; | ||||||
|  |  | ||||||
|  |       GridBase* DoublePrecGrid = src_d_in.Grid(); | ||||||
|  |       FieldD tmp_d(DoublePrecGrid); | ||||||
|  |       tmp_d.Checkerboard() = cb; | ||||||
|  |        | ||||||
|  |       FieldD tmp2_d(DoublePrecGrid); | ||||||
|  |       tmp2_d.Checkerboard() = cb; | ||||||
|  |        | ||||||
|  |       FieldD src_d(DoublePrecGrid); | ||||||
|  |       src_d = src_d_in; //source for next inner iteration, computed from residual during operation | ||||||
|  |        | ||||||
|  |       RealD inner_tol = InnerTolerance; | ||||||
|  |        | ||||||
|  |       FieldF src_f(SinglePrecGrid); | ||||||
|  |       src_f.Checkerboard() = cb; | ||||||
|  |        | ||||||
|  |       FieldF sol_f(SinglePrecGrid); | ||||||
|  |       sol_f.Checkerboard() = cb; | ||||||
|  |        | ||||||
|  |       BiCGSTAB<FieldF> CG_f(inner_tol, MaxInnerIterations); | ||||||
|  |       CG_f.ErrorOnNoConverge = false; | ||||||
|  |  | ||||||
|  |       GridStopWatch InnerCGtimer; | ||||||
|  |  | ||||||
|  |       GridStopWatch PrecChangeTimer; | ||||||
|  |        | ||||||
|  |       Integer &outer_iter = TotalOuterIterations; //so it will be equal to the final iteration count | ||||||
|  |          | ||||||
|  |       for(outer_iter = 0; outer_iter < MaxOuterIterations; outer_iter++) | ||||||
|  |       { | ||||||
|  |         // Compute double precision rsd and also new RHS vector. | ||||||
|  |         Linop_d.Op(sol_d, tmp_d); | ||||||
|  |         RealD norm = axpy_norm(src_d, -1., tmp_d, src_d_in); //src_d is residual vector | ||||||
|  |          | ||||||
|  |         std::cout << GridLogMessage << "MixedPrecisionBiCGSTAB: Outer iteration " << outer_iter << " residual " << norm << " target " << stop << std::endl; | ||||||
|  |  | ||||||
|  |         if(norm < OuterLoopNormMult * stop){ | ||||||
|  |           std::cout << GridLogMessage << "MixedPrecisionBiCGSTAB: Outer iteration converged on iteration " << outer_iter << std::endl; | ||||||
|  |           break; | ||||||
|  |         } | ||||||
|  |         while(norm * inner_tol * inner_tol < stop){ inner_tol *= 2; } // inner_tol = sqrt(stop/norm) ?? | ||||||
|  |  | ||||||
|  |         PrecChangeTimer.Start(); | ||||||
|  |         precisionChange(src_f, src_d); | ||||||
|  |         PrecChangeTimer.Stop(); | ||||||
|  |          | ||||||
|  |         sol_f = Zero(); | ||||||
|  |  | ||||||
|  |         //Optionally improve inner solver guess (eg using known eigenvectors) | ||||||
|  |         if(guesser != NULL){ (*guesser)(src_f, sol_f); } | ||||||
|  |  | ||||||
|  |         //Inner CG | ||||||
|  |         CG_f.Tolerance = inner_tol; | ||||||
|  |         InnerCGtimer.Start(); | ||||||
|  |         CG_f(Linop_f, src_f, sol_f); | ||||||
|  |         InnerCGtimer.Stop(); | ||||||
|  |         TotalInnerIterations += CG_f.IterationsToComplete; | ||||||
|  |          | ||||||
|  |         //Convert sol back to double and add to double prec solution | ||||||
|  |         PrecChangeTimer.Start(); | ||||||
|  |         precisionChange(tmp_d, sol_f); | ||||||
|  |         PrecChangeTimer.Stop(); | ||||||
|  |          | ||||||
|  |         axpy(sol_d, 1.0, tmp_d, sol_d); | ||||||
|  |       } | ||||||
|  |        | ||||||
|  |       //Final trial CG | ||||||
|  |       std::cout << GridLogMessage << "MixedPrecisionBiCGSTAB: Starting final patch-up double-precision solve" << std::endl; | ||||||
|  |        | ||||||
|  |       BiCGSTAB<FieldD> CG_d(Tolerance, MaxInnerIterations); | ||||||
|  |       CG_d(Linop_d, src_d_in, sol_d); | ||||||
|  |       TotalFinalStepIterations = CG_d.IterationsToComplete; | ||||||
|  |  | ||||||
|  |       TotalTimer.Stop(); | ||||||
|  |       std::cout << GridLogMessage << "MixedPrecisionBiCGSTAB: Inner CG iterations " << TotalInnerIterations << " Restarts " << TotalOuterIterations << " Final CG iterations " << TotalFinalStepIterations << std::endl; | ||||||
|  |       std::cout << GridLogMessage << "MixedPrecisionBiCGSTAB: Total time " << TotalTimer.Elapsed() << " Precision change " << PrecChangeTimer.Elapsed() << " Inner CG total " << InnerCGtimer.Elapsed() << std::endl; | ||||||
|  |   } | ||||||
|  | }; | ||||||
|  |  | ||||||
|  | NAMESPACE_END(Grid); | ||||||
|  |  | ||||||
|  | #endif | ||||||
							
								
								
									
										698
									
								
								Grid/algorithms/iterative/BlockConjugateGradient.h
									
									
									
									
									
										Normal file
									
								
							
							
						
						
									
										698
									
								
								Grid/algorithms/iterative/BlockConjugateGradient.h
									
									
									
									
									
										Normal file
									
								
							| @@ -0,0 +1,698 @@ | |||||||
|  | /************************************************************************************* | ||||||
|  |  | ||||||
|  | Grid physics library, www.github.com/paboyle/Grid | ||||||
|  |  | ||||||
|  | Source file: ./lib/algorithms/iterative/BlockConjugateGradient.h | ||||||
|  |  | ||||||
|  | Copyright (C) 2017 | ||||||
|  |  | ||||||
|  | Author: Azusa Yamaguchi <ayamaguc@staffmail.ed.ac.uk> | ||||||
|  | Author: Peter Boyle <paboyle@ph.ed.ac.uk> | ||||||
|  |  | ||||||
|  | This program is free software; you can redistribute it and/or modify | ||||||
|  | it under the terms of the GNU General Public License as published by | ||||||
|  | the Free Software Foundation; either version 2 of the License, or | ||||||
|  | (at your option) any later version. | ||||||
|  |  | ||||||
|  | This program is distributed in the hope that it will be useful, | ||||||
|  | but WITHOUT ANY WARRANTY; without even the implied warranty of | ||||||
|  | MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the | ||||||
|  | GNU General Public License for more details. | ||||||
|  |  | ||||||
|  | You should have received a copy of the GNU General Public License along | ||||||
|  | with this program; if not, write to the Free Software Foundation, Inc., | ||||||
|  | 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. | ||||||
|  |  | ||||||
|  | See the full license in the file "LICENSE" in the top level distribution | ||||||
|  | directory | ||||||
|  | *************************************************************************************/ | ||||||
|  | /*  END LEGAL */ | ||||||
|  | #pragma once | ||||||
|  |  | ||||||
|  | NAMESPACE_BEGIN(Grid); | ||||||
|  |  | ||||||
|  | enum BlockCGtype { BlockCG, BlockCGrQ, CGmultiRHS, BlockCGVec, BlockCGrQVec }; | ||||||
|  |  | ||||||
|  | ////////////////////////////////////////////////////////////////////////// | ||||||
|  | // Block conjugate gradient. Dimension zero should be the block direction | ||||||
|  | ////////////////////////////////////////////////////////////////////////// | ||||||
|  | template <class Field> | ||||||
|  | class BlockConjugateGradient : public OperatorFunction<Field> { | ||||||
|  |  public: | ||||||
|  |  | ||||||
|  |   typedef typename Field::scalar_type scomplex; | ||||||
|  |  | ||||||
|  |   int blockDim ; | ||||||
|  |   int Nblock; | ||||||
|  |  | ||||||
|  |   BlockCGtype CGtype; | ||||||
|  |   bool ErrorOnNoConverge;  // throw an assert when the CG fails to converge. | ||||||
|  |                            // Defaults true. | ||||||
|  |   RealD Tolerance; | ||||||
|  |   Integer MaxIterations; | ||||||
|  |   Integer IterationsToComplete; //Number of iterations the CG took to finish. Filled in upon completion | ||||||
|  |   Integer PrintInterval; //GridLogMessages or Iterative | ||||||
|  |   RealD TrueResidual; | ||||||
|  |    | ||||||
|  |   BlockConjugateGradient(BlockCGtype cgtype,int _Orthog,RealD tol, Integer maxit, bool err_on_no_conv = true) | ||||||
|  |     : Tolerance(tol), CGtype(cgtype),   blockDim(_Orthog),  MaxIterations(maxit), ErrorOnNoConverge(err_on_no_conv),PrintInterval(100) | ||||||
|  |   {}; | ||||||
|  |  | ||||||
|  | //////////////////////////////////////////////////////////////////////////////////////////////////// | ||||||
|  | // Thin QR factorisation (google it) | ||||||
|  | //////////////////////////////////////////////////////////////////////////////////////////////////// | ||||||
|  |   //////////////////////////////////////////////////////////////////////////////////////////////////// | ||||||
|  |   //Dimensions | ||||||
|  |   // R_{ferm x Nblock} =  Q_{ferm x Nblock} x  C_{Nblock x Nblock} -> ferm x Nblock | ||||||
|  |   // | ||||||
|  |   // Rdag R = m_rr = Herm = L L^dag        <-- Cholesky decomposition (LLT routine in Eigen) | ||||||
|  |   // | ||||||
|  |   //   Q  C = R => Q = R C^{-1} | ||||||
|  |   // | ||||||
|  |   // Want  Ident = Q^dag Q = C^{-dag} R^dag R C^{-1} = C^{-dag} L L^dag C^{-1} = 1_{Nblock x Nblock}  | ||||||
|  |   // | ||||||
|  |   // Set C = L^{dag}, and then Q^dag Q = ident  | ||||||
|  |   // | ||||||
|  |   // Checks: | ||||||
|  |   // Cdag C = Rdag R ; passes. | ||||||
|  |   // QdagQ  = 1      ; passes | ||||||
|  |   //////////////////////////////////////////////////////////////////////////////////////////////////// | ||||||
|  | void ThinQRfact (Eigen::MatrixXcd &m_rr, | ||||||
|  | 		 Eigen::MatrixXcd &C, | ||||||
|  | 		 Eigen::MatrixXcd &Cinv, | ||||||
|  | 		 Field & Q, | ||||||
|  | 		 const Field & R) | ||||||
|  | { | ||||||
|  |   int Orthog = blockDim; // First dimension is block dim; this is an assumption | ||||||
|  |   sliceInnerProductMatrix(m_rr,R,R,Orthog); | ||||||
|  |  | ||||||
|  |   // Force manifest hermitian to avoid rounding related | ||||||
|  |   m_rr = 0.5*(m_rr+m_rr.adjoint()); | ||||||
|  |  | ||||||
|  |   Eigen::MatrixXcd L    = m_rr.llt().matrixL();  | ||||||
|  |  | ||||||
|  |   C    = L.adjoint(); | ||||||
|  |   Cinv = C.inverse(); | ||||||
|  |   //////////////////////////////////////////////////////////////////////////////////////////////////// | ||||||
|  |   // Q = R C^{-1} | ||||||
|  |   // | ||||||
|  |   // Q_j  = R_i Cinv(i,j)  | ||||||
|  |   // | ||||||
|  |   // NB maddMatrix conventions are Right multiplication X[j] a[j,i] already | ||||||
|  |   //////////////////////////////////////////////////////////////////////////////////////////////////// | ||||||
|  |   sliceMulMatrix(Q,Cinv,R,Orthog); | ||||||
|  | } | ||||||
|  | // see comments above | ||||||
|  | void ThinQRfact (Eigen::MatrixXcd &m_rr, | ||||||
|  | 		 Eigen::MatrixXcd &C, | ||||||
|  | 		 Eigen::MatrixXcd &Cinv, | ||||||
|  | 		 std::vector<Field> & Q, | ||||||
|  | 		 const std::vector<Field> & R) | ||||||
|  | { | ||||||
|  |   InnerProductMatrix(m_rr,R,R); | ||||||
|  |  | ||||||
|  |   m_rr = 0.5*(m_rr+m_rr.adjoint()); | ||||||
|  |  | ||||||
|  |   Eigen::MatrixXcd L    = m_rr.llt().matrixL();  | ||||||
|  |  | ||||||
|  |   C    = L.adjoint(); | ||||||
|  |   Cinv = C.inverse(); | ||||||
|  |  | ||||||
|  |   MulMatrix(Q,Cinv,R); | ||||||
|  | } | ||||||
|  |  | ||||||
|  | //////////////////////////////////////////////////////////////////////////////////////////////////// | ||||||
|  | // Call one of several implementations | ||||||
|  | //////////////////////////////////////////////////////////////////////////////////////////////////// | ||||||
|  | void operator()(LinearOperatorBase<Field> &Linop, const Field &Src, Field &Psi)  | ||||||
|  | { | ||||||
|  |   if ( CGtype == BlockCGrQ ) { | ||||||
|  |     BlockCGrQsolve(Linop,Src,Psi); | ||||||
|  |   } else if (CGtype == CGmultiRHS ) { | ||||||
|  |     CGmultiRHSsolve(Linop,Src,Psi); | ||||||
|  |   } else { | ||||||
|  |     assert(0); | ||||||
|  |   } | ||||||
|  | } | ||||||
|  | virtual void operator()(LinearOperatorBase<Field> &Linop, const std::vector<Field> &Src, std::vector<Field> &Psi)  | ||||||
|  | { | ||||||
|  |   if ( CGtype == BlockCGrQVec ) { | ||||||
|  |     BlockCGrQsolveVec(Linop,Src,Psi); | ||||||
|  |   } else { | ||||||
|  |     assert(0); | ||||||
|  |   } | ||||||
|  | } | ||||||
|  |  | ||||||
|  | //////////////////////////////////////////////////////////////////////////// | ||||||
|  | // BlockCGrQ implementation: | ||||||
|  | //-------------------------- | ||||||
|  | // X is guess/Solution | ||||||
|  | // B is RHS | ||||||
|  | // Solve A X_i = B_i    ;        i refers to Nblock index | ||||||
|  | //////////////////////////////////////////////////////////////////////////// | ||||||
|  | void BlockCGrQsolve(LinearOperatorBase<Field> &Linop, const Field &B, Field &X)  | ||||||
|  | { | ||||||
|  |   int Orthog = blockDim; // First dimension is block dim; this is an assumption | ||||||
|  |   Nblock = B.Grid()->_fdimensions[Orthog]; | ||||||
|  | /* FAKE */ | ||||||
|  |   Nblock=8; | ||||||
|  |   std::cout<<GridLogMessage<<" Block Conjugate Gradient : Orthog "<<Orthog<<" Nblock "<<Nblock<<std::endl; | ||||||
|  |  | ||||||
|  |   X.Checkerboard() = B.Checkerboard(); | ||||||
|  |   conformable(X, B); | ||||||
|  |  | ||||||
|  |   Field tmp(B); | ||||||
|  |   Field Q(B); | ||||||
|  |   Field D(B); | ||||||
|  |   Field Z(B); | ||||||
|  |   Field AD(B); | ||||||
|  |  | ||||||
|  |   Eigen::MatrixXcd m_DZ     = Eigen::MatrixXcd::Identity(Nblock,Nblock); | ||||||
|  |   Eigen::MatrixXcd m_M      = Eigen::MatrixXcd::Identity(Nblock,Nblock); | ||||||
|  |   Eigen::MatrixXcd m_rr     = Eigen::MatrixXcd::Zero(Nblock,Nblock); | ||||||
|  |  | ||||||
|  |   Eigen::MatrixXcd m_C      = Eigen::MatrixXcd::Zero(Nblock,Nblock); | ||||||
|  |   Eigen::MatrixXcd m_Cinv   = Eigen::MatrixXcd::Zero(Nblock,Nblock); | ||||||
|  |   Eigen::MatrixXcd m_S      = Eigen::MatrixXcd::Zero(Nblock,Nblock); | ||||||
|  |   Eigen::MatrixXcd m_Sinv   = Eigen::MatrixXcd::Zero(Nblock,Nblock); | ||||||
|  |  | ||||||
|  |   Eigen::MatrixXcd m_tmp    = Eigen::MatrixXcd::Identity(Nblock,Nblock); | ||||||
|  |   Eigen::MatrixXcd m_tmp1   = Eigen::MatrixXcd::Identity(Nblock,Nblock); | ||||||
|  |  | ||||||
|  |   // Initial residual computation & set up | ||||||
|  |   std::vector<RealD> residuals(Nblock); | ||||||
|  |   std::vector<RealD> ssq(Nblock); | ||||||
|  |  | ||||||
|  |   sliceNorm(ssq,B,Orthog); | ||||||
|  |   RealD sssum=0; | ||||||
|  |   for(int b=0;b<Nblock;b++) sssum+=ssq[b]; | ||||||
|  |  | ||||||
|  |   sliceNorm(residuals,B,Orthog); | ||||||
|  |   for(int b=0;b<Nblock;b++){ assert(std::isnan(residuals[b])==0); } | ||||||
|  |  | ||||||
|  |   sliceNorm(residuals,X,Orthog); | ||||||
|  |   for(int b=0;b<Nblock;b++){ assert(std::isnan(residuals[b])==0); } | ||||||
|  |  | ||||||
|  |   /************************************************************************ | ||||||
|  |    * Block conjugate gradient rQ (Sebastien Birk Thesis, after Dubrulle 2001) | ||||||
|  |    ************************************************************************ | ||||||
|  |    * Dimensions: | ||||||
|  |    * | ||||||
|  |    *   X,B==(Nferm x Nblock) | ||||||
|  |    *   A==(Nferm x Nferm) | ||||||
|  |    *   | ||||||
|  |    * Nferm = Nspin x Ncolour x Ncomplex x Nlattice_site | ||||||
|  |    *  | ||||||
|  |    * QC = R = B-AX, D = Q     ; QC => Thin QR factorisation (google it) | ||||||
|  |    * for k:  | ||||||
|  |    *   Z  = AD | ||||||
|  |    *   M  = [D^dag Z]^{-1} | ||||||
|  |    *   X  = X + D MC | ||||||
|  |    *   QS = Q - ZM | ||||||
|  |    *   D  = Q + D S^dag | ||||||
|  |    *   C  = S C | ||||||
|  |    */ | ||||||
|  |   /////////////////////////////////////// | ||||||
|  |   // Initial block: initial search dir is guess | ||||||
|  |   /////////////////////////////////////// | ||||||
|  |   std::cout << GridLogMessage<<"BlockCGrQ algorithm initialisation " <<std::endl; | ||||||
|  |  | ||||||
|  |   //1.  QC = R = B-AX, D = Q     ; QC => Thin QR factorisation (google it) | ||||||
|  |   Linop.HermOp(X, AD); | ||||||
|  |   tmp = B - AD;   | ||||||
|  |  | ||||||
|  |   ThinQRfact (m_rr, m_C, m_Cinv, Q, tmp); | ||||||
|  |   D=Q; | ||||||
|  |  | ||||||
|  |   std::cout << GridLogMessage<<"BlockCGrQ computed initial residual and QR fact " <<std::endl; | ||||||
|  |  | ||||||
|  |   /////////////////////////////////////// | ||||||
|  |   // Timers | ||||||
|  |   /////////////////////////////////////// | ||||||
|  |   GridStopWatch sliceInnerTimer; | ||||||
|  |   GridStopWatch sliceMaddTimer; | ||||||
|  |   GridStopWatch QRTimer; | ||||||
|  |   GridStopWatch MatrixTimer; | ||||||
|  |   GridStopWatch SolverTimer; | ||||||
|  |   SolverTimer.Start(); | ||||||
|  |  | ||||||
|  |   int k; | ||||||
|  |   for (k = 1; k <= MaxIterations; k++) { | ||||||
|  |  | ||||||
|  |     //3. Z  = AD | ||||||
|  |     MatrixTimer.Start(); | ||||||
|  |     Linop.HermOp(D, Z);       | ||||||
|  |     MatrixTimer.Stop(); | ||||||
|  |  | ||||||
|  |     //4. M  = [D^dag Z]^{-1} | ||||||
|  |     sliceInnerTimer.Start(); | ||||||
|  |     sliceInnerProductMatrix(m_DZ,D,Z,Orthog); | ||||||
|  |     sliceInnerTimer.Stop(); | ||||||
|  |     m_M       = m_DZ.inverse(); | ||||||
|  |      | ||||||
|  |     //5. X  = X + D MC | ||||||
|  |     m_tmp     = m_M * m_C; | ||||||
|  |     sliceMaddTimer.Start(); | ||||||
|  |     sliceMaddMatrix(X,m_tmp, D,X,Orthog);      | ||||||
|  |     sliceMaddTimer.Stop(); | ||||||
|  |  | ||||||
|  |     //6. QS = Q - ZM | ||||||
|  |     sliceMaddTimer.Start(); | ||||||
|  |     sliceMaddMatrix(tmp,m_M,Z,Q,Orthog,-1.0); | ||||||
|  |     sliceMaddTimer.Stop(); | ||||||
|  |     QRTimer.Start(); | ||||||
|  |     ThinQRfact (m_rr, m_S, m_Sinv, Q, tmp); | ||||||
|  |     QRTimer.Stop(); | ||||||
|  |      | ||||||
|  |     //7. D  = Q + D S^dag | ||||||
|  |     m_tmp = m_S.adjoint(); | ||||||
|  |  | ||||||
|  |     sliceMaddTimer.Start(); | ||||||
|  |     sliceMaddMatrix(D,m_tmp,D,Q,Orthog); | ||||||
|  |     sliceMaddTimer.Stop(); | ||||||
|  |  | ||||||
|  |     //8. C  = S C | ||||||
|  |     m_C = m_S*m_C; | ||||||
|  |      | ||||||
|  |     /********************* | ||||||
|  |      * convergence monitor | ||||||
|  |      ********************* | ||||||
|  |      */ | ||||||
|  |     m_rr = m_C.adjoint() * m_C; | ||||||
|  |  | ||||||
|  |     RealD max_resid=0; | ||||||
|  |     RealD rrsum=0; | ||||||
|  |     RealD rr; | ||||||
|  |  | ||||||
|  |     for(int b=0;b<Nblock;b++) { | ||||||
|  |       rrsum+=real(m_rr(b,b)); | ||||||
|  |       rr = real(m_rr(b,b))/ssq[b]; | ||||||
|  |       if ( rr > max_resid ) max_resid = rr; | ||||||
|  |     } | ||||||
|  |  | ||||||
|  |     std::cout << GridLogIterative << "\titeration "<<k<<" rr_sum "<<rrsum<<" ssq_sum "<< sssum | ||||||
|  | 	      <<" ave "<<std::sqrt(rrsum/sssum) << " max "<< max_resid <<std::endl; | ||||||
|  |  | ||||||
|  |     if ( max_resid < Tolerance*Tolerance ) {  | ||||||
|  |  | ||||||
|  |       SolverTimer.Stop(); | ||||||
|  |  | ||||||
|  |       std::cout << GridLogMessage<<"BlockCGrQ converged in "<<k<<" iterations"<<std::endl; | ||||||
|  |  | ||||||
|  |       for(int b=0;b<Nblock;b++){ | ||||||
|  | 	std::cout << GridLogMessage<< "\t\tblock "<<b<<" computed resid " | ||||||
|  | 		  << std::sqrt(real(m_rr(b,b))/ssq[b])<<std::endl; | ||||||
|  |       } | ||||||
|  |       std::cout << GridLogMessage<<"\tMax residual is "<<std::sqrt(max_resid)<<std::endl; | ||||||
|  |  | ||||||
|  |       Linop.HermOp(X, AD); | ||||||
|  |       AD = AD-B; | ||||||
|  |       TrueResidual = std::sqrt(norm2(AD)/norm2(B)); | ||||||
|  |       std::cout << GridLogMessage <<"\tTrue residual is " << TrueResidual <<std::endl; | ||||||
|  |  | ||||||
|  |       std::cout << GridLogMessage << "Time Breakdown "<<std::endl; | ||||||
|  |       std::cout << GridLogMessage << "\tElapsed    " << SolverTimer.Elapsed()     <<std::endl; | ||||||
|  |       std::cout << GridLogMessage << "\tMatrix     " << MatrixTimer.Elapsed()     <<std::endl; | ||||||
|  |       std::cout << GridLogMessage << "\tInnerProd  " << sliceInnerTimer.Elapsed() <<std::endl; | ||||||
|  |       std::cout << GridLogMessage << "\tMaddMatrix " << sliceMaddTimer.Elapsed()  <<std::endl; | ||||||
|  |       std::cout << GridLogMessage << "\tThinQRfact " << QRTimer.Elapsed()  <<std::endl; | ||||||
|  | 	     | ||||||
|  |       IterationsToComplete = k; | ||||||
|  |       return; | ||||||
|  |     } | ||||||
|  |  | ||||||
|  |   } | ||||||
|  |   std::cout << GridLogMessage << "BlockConjugateGradient(rQ) did NOT converge" << std::endl; | ||||||
|  |  | ||||||
|  |   if (ErrorOnNoConverge) assert(0); | ||||||
|  |   IterationsToComplete = k; | ||||||
|  | } | ||||||
|  | ////////////////////////////////////////////////////////////////////////// | ||||||
|  | // multiRHS conjugate gradient. Dimension zero should be the block direction | ||||||
|  | // Use this for spread out across nodes | ||||||
|  | ////////////////////////////////////////////////////////////////////////// | ||||||
|  | void CGmultiRHSsolve(LinearOperatorBase<Field> &Linop, const Field &Src, Field &Psi)  | ||||||
|  | { | ||||||
|  |   int Orthog = blockDim; // First dimension is block dim | ||||||
|  |   Nblock = Src.Grid()->_fdimensions[Orthog]; | ||||||
|  |  | ||||||
|  |   std::cout<<GridLogMessage<<"MultiRHS Conjugate Gradient : Orthog "<<Orthog<<" Nblock "<<Nblock<<std::endl; | ||||||
|  |  | ||||||
|  |   Psi.Checkerboard() = Src.Checkerboard(); | ||||||
|  |   conformable(Psi, Src); | ||||||
|  |  | ||||||
|  |   Field P(Src); | ||||||
|  |   Field AP(Src); | ||||||
|  |   Field R(Src); | ||||||
|  |    | ||||||
|  |   std::vector<ComplexD> v_pAp(Nblock); | ||||||
|  |   std::vector<RealD> v_rr (Nblock); | ||||||
|  |   std::vector<RealD> v_rr_inv(Nblock); | ||||||
|  |   std::vector<RealD> v_alpha(Nblock); | ||||||
|  |   std::vector<RealD> v_beta(Nblock); | ||||||
|  |  | ||||||
|  |   // Initial residual computation & set up | ||||||
|  |   std::vector<RealD> residuals(Nblock); | ||||||
|  |   std::vector<RealD> ssq(Nblock); | ||||||
|  |  | ||||||
|  |   sliceNorm(ssq,Src,Orthog); | ||||||
|  |   RealD sssum=0; | ||||||
|  |   for(int b=0;b<Nblock;b++) sssum+=ssq[b]; | ||||||
|  |  | ||||||
|  |   sliceNorm(residuals,Src,Orthog); | ||||||
|  |   for(int b=0;b<Nblock;b++){ assert(std::isnan(residuals[b])==0); } | ||||||
|  |  | ||||||
|  |   sliceNorm(residuals,Psi,Orthog); | ||||||
|  |   for(int b=0;b<Nblock;b++){ assert(std::isnan(residuals[b])==0); } | ||||||
|  |  | ||||||
|  |   // Initial search dir is guess | ||||||
|  |   Linop.HermOp(Psi, AP); | ||||||
|  |  | ||||||
|  |   R = Src - AP;   | ||||||
|  |   P = R; | ||||||
|  |   sliceNorm(v_rr,R,Orthog); | ||||||
|  |  | ||||||
|  |   GridStopWatch sliceInnerTimer; | ||||||
|  |   GridStopWatch sliceMaddTimer; | ||||||
|  |   GridStopWatch sliceNormTimer; | ||||||
|  |   GridStopWatch MatrixTimer; | ||||||
|  |   GridStopWatch SolverTimer; | ||||||
|  |  | ||||||
|  |   SolverTimer.Start(); | ||||||
|  |   int k; | ||||||
|  |   for (k = 1; k <= MaxIterations; k++) { | ||||||
|  |  | ||||||
|  |     RealD rrsum=0; | ||||||
|  |     for(int b=0;b<Nblock;b++) rrsum+=real(v_rr[b]); | ||||||
|  |  | ||||||
|  |     std::cout << GridLogIterative << "\titeration "<<k<<" rr_sum "<<rrsum<<" ssq_sum "<< sssum | ||||||
|  | 	      <<" / "<<std::sqrt(rrsum/sssum) <<std::endl; | ||||||
|  |  | ||||||
|  |     MatrixTimer.Start(); | ||||||
|  |     Linop.HermOp(P, AP); | ||||||
|  |     MatrixTimer.Stop(); | ||||||
|  |  | ||||||
|  |     // Alpha | ||||||
|  |     sliceInnerTimer.Start(); | ||||||
|  |     sliceInnerProductVector(v_pAp,P,AP,Orthog); | ||||||
|  |     sliceInnerTimer.Stop(); | ||||||
|  |     for(int b=0;b<Nblock;b++){ | ||||||
|  |       v_alpha[b] = v_rr[b]/real(v_pAp[b]); | ||||||
|  |     } | ||||||
|  |  | ||||||
|  |     // Psi, R update | ||||||
|  |     sliceMaddTimer.Start(); | ||||||
|  |     sliceMaddVector(Psi,v_alpha, P,Psi,Orthog);     // add alpha *  P to psi | ||||||
|  |     sliceMaddVector(R  ,v_alpha,AP,  R,Orthog,-1.0);// sub alpha * AP to resid | ||||||
|  |     sliceMaddTimer.Stop(); | ||||||
|  |  | ||||||
|  |     // Beta | ||||||
|  |     for(int b=0;b<Nblock;b++){ | ||||||
|  |       v_rr_inv[b] = 1.0/v_rr[b]; | ||||||
|  |     } | ||||||
|  |     sliceNormTimer.Start(); | ||||||
|  |     sliceNorm(v_rr,R,Orthog); | ||||||
|  |     sliceNormTimer.Stop(); | ||||||
|  |     for(int b=0;b<Nblock;b++){ | ||||||
|  |       v_beta[b] = v_rr_inv[b] *v_rr[b]; | ||||||
|  |     } | ||||||
|  |  | ||||||
|  |     // Search update | ||||||
|  |     sliceMaddTimer.Start(); | ||||||
|  |     sliceMaddVector(P,v_beta,P,R,Orthog); | ||||||
|  |     sliceMaddTimer.Stop(); | ||||||
|  |  | ||||||
|  |     /********************* | ||||||
|  |      * convergence monitor | ||||||
|  |      ********************* | ||||||
|  |      */ | ||||||
|  |     RealD max_resid=0; | ||||||
|  |     for(int b=0;b<Nblock;b++){ | ||||||
|  |       RealD rr = v_rr[b]/ssq[b]; | ||||||
|  |       if ( rr > max_resid ) max_resid = rr; | ||||||
|  |     } | ||||||
|  |      | ||||||
|  |     if ( max_resid < Tolerance*Tolerance ) {  | ||||||
|  |  | ||||||
|  |       SolverTimer.Stop(); | ||||||
|  |  | ||||||
|  |       std::cout << GridLogMessage<<"MultiRHS solver converged in " <<k<<" iterations"<<std::endl; | ||||||
|  |       for(int b=0;b<Nblock;b++){ | ||||||
|  | 	std::cout << GridLogMessage<< "\t\tBlock "<<b<<" computed resid "<< std::sqrt(v_rr[b]/ssq[b])<<std::endl; | ||||||
|  |       } | ||||||
|  |       std::cout << GridLogMessage<<"\tMax residual is "<<std::sqrt(max_resid)<<std::endl; | ||||||
|  |  | ||||||
|  |       Linop.HermOp(Psi, AP); | ||||||
|  |       AP = AP-Src; | ||||||
|  |       TrueResidual = std::sqrt(norm2(AP)/norm2(Src)); | ||||||
|  |       std::cout <<GridLogMessage << "\tTrue residual is " << TrueResidual <<std::endl; | ||||||
|  |  | ||||||
|  |       std::cout << GridLogMessage << "Time Breakdown "<<std::endl; | ||||||
|  |       std::cout << GridLogMessage << "\tElapsed    " << SolverTimer.Elapsed()     <<std::endl; | ||||||
|  |       std::cout << GridLogMessage << "\tMatrix     " << MatrixTimer.Elapsed()     <<std::endl; | ||||||
|  |       std::cout << GridLogMessage << "\tInnerProd  " << sliceInnerTimer.Elapsed() <<std::endl; | ||||||
|  |       std::cout << GridLogMessage << "\tNorm       " << sliceNormTimer.Elapsed() <<std::endl; | ||||||
|  |       std::cout << GridLogMessage << "\tMaddMatrix " << sliceMaddTimer.Elapsed()  <<std::endl; | ||||||
|  |  | ||||||
|  |  | ||||||
|  |       IterationsToComplete = k; | ||||||
|  |       return; | ||||||
|  |     } | ||||||
|  |  | ||||||
|  |   } | ||||||
|  |   std::cout << GridLogMessage << "MultiRHSConjugateGradient did NOT converge" << std::endl; | ||||||
|  |  | ||||||
|  |   if (ErrorOnNoConverge) assert(0); | ||||||
|  |   IterationsToComplete = k; | ||||||
|  | } | ||||||
|  |  | ||||||
|  | void InnerProductMatrix(Eigen::MatrixXcd &m , const std::vector<Field> &X, const std::vector<Field> &Y){ | ||||||
|  |   for(int b=0;b<Nblock;b++){ | ||||||
|  |   for(int bp=0;bp<Nblock;bp++) { | ||||||
|  |     m(b,bp) = innerProduct(X[b],Y[bp]);   | ||||||
|  |   }} | ||||||
|  | } | ||||||
|  | void MaddMatrix(std::vector<Field> &AP, Eigen::MatrixXcd &m , const std::vector<Field> &X,const std::vector<Field> &Y,RealD scale=1.0){ | ||||||
|  |   // Should make this cache friendly with site outermost, parallel_for | ||||||
|  |   // Deal with case AP aliases with either Y or X | ||||||
|  |   std::vector<Field> tmp(Nblock,X[0]); | ||||||
|  |   for(int b=0;b<Nblock;b++){ | ||||||
|  |     tmp[b]   = Y[b]; | ||||||
|  |     for(int bp=0;bp<Nblock;bp++) { | ||||||
|  |       tmp[b] = tmp[b] + scomplex(scale*m(bp,b))*X[bp];  | ||||||
|  |     } | ||||||
|  |   } | ||||||
|  |   for(int b=0;b<Nblock;b++){ | ||||||
|  |     AP[b] = tmp[b]; | ||||||
|  |   } | ||||||
|  | } | ||||||
|  | void MulMatrix(std::vector<Field> &AP, Eigen::MatrixXcd &m , const std::vector<Field> &X){ | ||||||
|  |   // Should make this cache friendly with site outermost, parallel_for | ||||||
|  |   for(int b=0;b<Nblock;b++){ | ||||||
|  |     AP[b] = Zero(); | ||||||
|  |     for(int bp=0;bp<Nblock;bp++) { | ||||||
|  |       AP[b] += scomplex(m(bp,b))*X[bp];  | ||||||
|  |     } | ||||||
|  |   } | ||||||
|  | } | ||||||
|  | double normv(const std::vector<Field> &P){ | ||||||
|  |   double nn = 0.0; | ||||||
|  |   for(int b=0;b<Nblock;b++) { | ||||||
|  |     nn+=norm2(P[b]); | ||||||
|  |   } | ||||||
|  |   return nn; | ||||||
|  | } | ||||||
|  |  | ||||||
|  | //////////////////////////////////////////////////////////////////////////// | ||||||
|  | // BlockCGrQvec implementation: | ||||||
|  | //-------------------------- | ||||||
|  | // X is guess/Solution | ||||||
|  | // B is RHS | ||||||
|  | // Solve A X_i = B_i    ;        i refers to Nblock index | ||||||
|  | //////////////////////////////////////////////////////////////////////////// | ||||||
|  | void BlockCGrQsolveVec(LinearOperatorBase<Field> &Linop, const std::vector<Field> &B, std::vector<Field> &X)  | ||||||
|  | { | ||||||
|  |   Nblock = B.size(); | ||||||
|  |   assert(Nblock == X.size()); | ||||||
|  |  | ||||||
|  |   std::cout<<GridLogMessage<<" Block Conjugate Gradient Vec rQ : Nblock "<<Nblock<<std::endl; | ||||||
|  |  | ||||||
|  |   for(int b=0;b<Nblock;b++){  | ||||||
|  |     X[b].Checkerboard() = B[b].Checkerboard(); | ||||||
|  |     conformable(X[b], B[b]); | ||||||
|  |     conformable(X[b], X[0]);  | ||||||
|  |   } | ||||||
|  |  | ||||||
|  |   Field Fake(B[0]); | ||||||
|  |  | ||||||
|  |   std::vector<Field> tmp(Nblock,Fake); | ||||||
|  |   std::vector<Field>   Q(Nblock,Fake); | ||||||
|  |   std::vector<Field>   D(Nblock,Fake); | ||||||
|  |   std::vector<Field>   Z(Nblock,Fake); | ||||||
|  |   std::vector<Field>  AD(Nblock,Fake); | ||||||
|  |  | ||||||
|  |   Eigen::MatrixXcd m_DZ     = Eigen::MatrixXcd::Identity(Nblock,Nblock); | ||||||
|  |   Eigen::MatrixXcd m_M      = Eigen::MatrixXcd::Identity(Nblock,Nblock); | ||||||
|  |   Eigen::MatrixXcd m_rr     = Eigen::MatrixXcd::Zero(Nblock,Nblock); | ||||||
|  |  | ||||||
|  |   Eigen::MatrixXcd m_C      = Eigen::MatrixXcd::Zero(Nblock,Nblock); | ||||||
|  |   Eigen::MatrixXcd m_Cinv   = Eigen::MatrixXcd::Zero(Nblock,Nblock); | ||||||
|  |   Eigen::MatrixXcd m_S      = Eigen::MatrixXcd::Zero(Nblock,Nblock); | ||||||
|  |   Eigen::MatrixXcd m_Sinv   = Eigen::MatrixXcd::Zero(Nblock,Nblock); | ||||||
|  |  | ||||||
|  |   Eigen::MatrixXcd m_tmp    = Eigen::MatrixXcd::Identity(Nblock,Nblock); | ||||||
|  |   Eigen::MatrixXcd m_tmp1   = Eigen::MatrixXcd::Identity(Nblock,Nblock); | ||||||
|  |  | ||||||
|  |   // Initial residual computation & set up | ||||||
|  |   std::vector<RealD> residuals(Nblock); | ||||||
|  |   std::vector<RealD> ssq(Nblock); | ||||||
|  |  | ||||||
|  |   RealD sssum=0; | ||||||
|  |   for(int b=0;b<Nblock;b++){ ssq[b] = norm2(B[b]);} | ||||||
|  |   for(int b=0;b<Nblock;b++) sssum+=ssq[b]; | ||||||
|  |  | ||||||
|  |   for(int b=0;b<Nblock;b++){ residuals[b] = norm2(B[b]);} | ||||||
|  |   for(int b=0;b<Nblock;b++){ assert(std::isnan(residuals[b])==0); } | ||||||
|  |  | ||||||
|  |   for(int b=0;b<Nblock;b++){ residuals[b] = norm2(X[b]);} | ||||||
|  |   for(int b=0;b<Nblock;b++){ assert(std::isnan(residuals[b])==0); } | ||||||
|  |  | ||||||
|  |   /************************************************************************ | ||||||
|  |    * Block conjugate gradient rQ (Sebastien Birk Thesis, after Dubrulle 2001) | ||||||
|  |    ************************************************************************ | ||||||
|  |    * Dimensions: | ||||||
|  |    * | ||||||
|  |    *   X,B==(Nferm x Nblock) | ||||||
|  |    *   A==(Nferm x Nferm) | ||||||
|  |    *   | ||||||
|  |    * Nferm = Nspin x Ncolour x Ncomplex x Nlattice_site | ||||||
|  |    *  | ||||||
|  |    * QC = R = B-AX, D = Q     ; QC => Thin QR factorisation (google it) | ||||||
|  |    * for k:  | ||||||
|  |    *   Z  = AD | ||||||
|  |    *   M  = [D^dag Z]^{-1} | ||||||
|  |    *   X  = X + D MC | ||||||
|  |    *   QS = Q - ZM | ||||||
|  |    *   D  = Q + D S^dag | ||||||
|  |    *   C  = S C | ||||||
|  |    */ | ||||||
|  |   /////////////////////////////////////// | ||||||
|  |   // Initial block: initial search dir is guess | ||||||
|  |   /////////////////////////////////////// | ||||||
|  |   std::cout << GridLogMessage<<"BlockCGrQvec algorithm initialisation " <<std::endl; | ||||||
|  |  | ||||||
|  |   //1.  QC = R = B-AX, D = Q     ; QC => Thin QR factorisation (google it) | ||||||
|  |   for(int b=0;b<Nblock;b++) { | ||||||
|  |     Linop.HermOp(X[b], AD[b]); | ||||||
|  |     tmp[b] = B[b] - AD[b];   | ||||||
|  |   } | ||||||
|  |  | ||||||
|  |   ThinQRfact (m_rr, m_C, m_Cinv, Q, tmp); | ||||||
|  |  | ||||||
|  |   for(int b=0;b<Nblock;b++) D[b]=Q[b]; | ||||||
|  |  | ||||||
|  |   std::cout << GridLogMessage<<"BlockCGrQ vec computed initial residual and QR fact " <<std::endl; | ||||||
|  |  | ||||||
|  |   /////////////////////////////////////// | ||||||
|  |   // Timers | ||||||
|  |   /////////////////////////////////////// | ||||||
|  |   GridStopWatch sliceInnerTimer; | ||||||
|  |   GridStopWatch sliceMaddTimer; | ||||||
|  |   GridStopWatch QRTimer; | ||||||
|  |   GridStopWatch MatrixTimer; | ||||||
|  |   GridStopWatch SolverTimer; | ||||||
|  |   SolverTimer.Start(); | ||||||
|  |  | ||||||
|  |   int k; | ||||||
|  |   for (k = 1; k <= MaxIterations; k++) { | ||||||
|  |  | ||||||
|  |     //3. Z  = AD | ||||||
|  |     MatrixTimer.Start(); | ||||||
|  |     for(int b=0;b<Nblock;b++) Linop.HermOp(D[b], Z[b]);       | ||||||
|  |     MatrixTimer.Stop(); | ||||||
|  |  | ||||||
|  |     //4. M  = [D^dag Z]^{-1} | ||||||
|  |     sliceInnerTimer.Start(); | ||||||
|  |     InnerProductMatrix(m_DZ,D,Z); | ||||||
|  |     sliceInnerTimer.Stop(); | ||||||
|  |     m_M       = m_DZ.inverse(); | ||||||
|  |      | ||||||
|  |     //5. X  = X + D MC | ||||||
|  |     m_tmp     = m_M * m_C; | ||||||
|  |     sliceMaddTimer.Start(); | ||||||
|  |     MaddMatrix(X,m_tmp, D,X);      | ||||||
|  |     sliceMaddTimer.Stop(); | ||||||
|  |  | ||||||
|  |     //6. QS = Q - ZM | ||||||
|  |     sliceMaddTimer.Start(); | ||||||
|  |     MaddMatrix(tmp,m_M,Z,Q,-1.0); | ||||||
|  |     sliceMaddTimer.Stop(); | ||||||
|  |     QRTimer.Start(); | ||||||
|  |     ThinQRfact (m_rr, m_S, m_Sinv, Q, tmp); | ||||||
|  |     QRTimer.Stop(); | ||||||
|  |      | ||||||
|  |     //7. D  = Q + D S^dag | ||||||
|  |     m_tmp = m_S.adjoint(); | ||||||
|  |     sliceMaddTimer.Start(); | ||||||
|  |     MaddMatrix(D,m_tmp,D,Q); | ||||||
|  |     sliceMaddTimer.Stop(); | ||||||
|  |  | ||||||
|  |     //8. C  = S C | ||||||
|  |     m_C = m_S*m_C; | ||||||
|  |      | ||||||
|  |     /********************* | ||||||
|  |      * convergence monitor | ||||||
|  |      ********************* | ||||||
|  |      */ | ||||||
|  |     m_rr = m_C.adjoint() * m_C; | ||||||
|  |  | ||||||
|  |     RealD max_resid=0; | ||||||
|  |     RealD rrsum=0; | ||||||
|  |     RealD rr; | ||||||
|  |  | ||||||
|  |     for(int b=0;b<Nblock;b++) { | ||||||
|  |       rrsum+=real(m_rr(b,b)); | ||||||
|  |       rr = real(m_rr(b,b))/ssq[b]; | ||||||
|  |       if ( rr > max_resid ) max_resid = rr; | ||||||
|  |     } | ||||||
|  |  | ||||||
|  |     std::cout << GridLogIterative << "\t Block Iteration "<<k<<" ave resid "<< std::sqrt(rrsum/sssum) << " max "<< std::sqrt(max_resid) <<std::endl; | ||||||
|  |  | ||||||
|  |     if ( max_resid < Tolerance*Tolerance ) {  | ||||||
|  |  | ||||||
|  |       SolverTimer.Stop(); | ||||||
|  |  | ||||||
|  |       std::cout << GridLogMessage<<"BlockCGrQ converged in "<<k<<" iterations"<<std::endl; | ||||||
|  |  | ||||||
|  |       for(int b=0;b<Nblock;b++){ | ||||||
|  | 	std::cout << GridLogMessage<< "\t\tblock "<<b<<" computed resid "<< std::sqrt(real(m_rr(b,b))/ssq[b])<<std::endl; | ||||||
|  |       } | ||||||
|  |       std::cout << GridLogMessage<<"\tMax residual is "<<std::sqrt(max_resid)<<std::endl; | ||||||
|  |  | ||||||
|  |       for(int b=0;b<Nblock;b++) Linop.HermOp(X[b], AD[b]); | ||||||
|  |       for(int b=0;b<Nblock;b++) AD[b] = AD[b]-B[b]; | ||||||
|  |       TrueResidual = std::sqrt(normv(AD)/normv(B)); | ||||||
|  |       std::cout << GridLogMessage << "\tTrue residual is " << TrueResidual <<std::endl; | ||||||
|  |  | ||||||
|  |       std::cout << GridLogMessage << "Time Breakdown "<<std::endl; | ||||||
|  |       std::cout << GridLogMessage << "\tElapsed    " << SolverTimer.Elapsed()     <<std::endl; | ||||||
|  |       std::cout << GridLogMessage << "\tMatrix     " << MatrixTimer.Elapsed()     <<std::endl; | ||||||
|  |       std::cout << GridLogMessage << "\tInnerProd  " << sliceInnerTimer.Elapsed() <<std::endl; | ||||||
|  |       std::cout << GridLogMessage << "\tMaddMatrix " << sliceMaddTimer.Elapsed()  <<std::endl; | ||||||
|  |       std::cout << GridLogMessage << "\tThinQRfact " << QRTimer.Elapsed()  <<std::endl; | ||||||
|  | 	     | ||||||
|  |       IterationsToComplete = k; | ||||||
|  |       return; | ||||||
|  |     } | ||||||
|  |  | ||||||
|  |   } | ||||||
|  |   std::cout << GridLogMessage << "BlockConjugateGradient(rQ) did NOT converge" << std::endl; | ||||||
|  |  | ||||||
|  |   if (ErrorOnNoConverge) assert(0); | ||||||
|  |   IterationsToComplete = k; | ||||||
|  | } | ||||||
|  |  | ||||||
|  | }; | ||||||
|  |  | ||||||
|  | NAMESPACE_END(Grid); | ||||||
|  |  | ||||||
| @@ -0,0 +1,248 @@ | |||||||
|  | /************************************************************************************* | ||||||
|  |  | ||||||
|  | Grid physics library, www.github.com/paboyle/Grid | ||||||
|  |  | ||||||
|  | Source file: ./lib/algorithms/iterative/CommunicationAvoidingGeneralisedMinimalResidual.h | ||||||
|  |  | ||||||
|  | Copyright (C) 2015 | ||||||
|  |  | ||||||
|  | Author: Daniel Richtmann <daniel.richtmann@ur.de> | ||||||
|  |  | ||||||
|  | This program is free software; you can redistribute it and/or modify | ||||||
|  | it under the terms of the GNU General Public License as published by | ||||||
|  | the Free Software Foundation; either version 2 of the License, or | ||||||
|  | (at your option) any later version. | ||||||
|  |  | ||||||
|  | This program is distributed in the hope that it will be useful, | ||||||
|  | but WITHOUT ANY WARRANTY; without even the implied warranty of | ||||||
|  | MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the | ||||||
|  | GNU General Public License for more details. | ||||||
|  |  | ||||||
|  | You should have received a copy of the GNU General Public License along | ||||||
|  | with this program; if not, write to the Free Software Foundation, Inc., | ||||||
|  | 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. | ||||||
|  |  | ||||||
|  | See the full license in the file "LICENSE" in the top level distribution | ||||||
|  | directory | ||||||
|  | *************************************************************************************/ | ||||||
|  | /*  END LEGAL */ | ||||||
|  | #ifndef GRID_COMMUNICATION_AVOIDING_GENERALISED_MINIMAL_RESIDUAL_H | ||||||
|  | #define GRID_COMMUNICATION_AVOIDING_GENERALISED_MINIMAL_RESIDUAL_H | ||||||
|  |  | ||||||
|  | namespace Grid { | ||||||
|  |  | ||||||
|  | template<class Field> | ||||||
|  | class CommunicationAvoidingGeneralisedMinimalResidual : public OperatorFunction<Field> { | ||||||
|  |  public: | ||||||
|  |   using OperatorFunction<Field>::operator(); | ||||||
|  |  | ||||||
|  |   bool ErrorOnNoConverge; // Throw an assert when CAGMRES fails to converge, | ||||||
|  |                           // defaults to true | ||||||
|  |  | ||||||
|  |   RealD   Tolerance; | ||||||
|  |  | ||||||
|  |   Integer MaxIterations; | ||||||
|  |   Integer RestartLength; | ||||||
|  |   Integer MaxNumberOfRestarts; | ||||||
|  |   Integer IterationCount; // Number of iterations the CAGMRES took to finish, | ||||||
|  |                           // filled in upon completion | ||||||
|  |  | ||||||
|  |   GridStopWatch MatrixTimer; | ||||||
|  |   GridStopWatch LinalgTimer; | ||||||
|  |   GridStopWatch QrTimer; | ||||||
|  |   GridStopWatch CompSolutionTimer; | ||||||
|  |  | ||||||
|  |   Eigen::MatrixXcd H; | ||||||
|  |  | ||||||
|  |   std::vector<ComplexD> y; | ||||||
|  |   std::vector<ComplexD> gamma; | ||||||
|  |   std::vector<ComplexD> c; | ||||||
|  |   std::vector<ComplexD> s; | ||||||
|  |  | ||||||
|  |   CommunicationAvoidingGeneralisedMinimalResidual(RealD   tol, | ||||||
|  |                                                   Integer maxit, | ||||||
|  |                                                   Integer restart_length, | ||||||
|  |                                                   bool    err_on_no_conv = true) | ||||||
|  |       : Tolerance(tol) | ||||||
|  |       , MaxIterations(maxit) | ||||||
|  |       , RestartLength(restart_length) | ||||||
|  |       , MaxNumberOfRestarts(MaxIterations/RestartLength + ((MaxIterations%RestartLength == 0) ? 0 : 1)) | ||||||
|  |       , ErrorOnNoConverge(err_on_no_conv) | ||||||
|  |       , H(Eigen::MatrixXcd::Zero(RestartLength, RestartLength + 1)) // sizes taken from DD-αAMG code base | ||||||
|  |       , y(RestartLength + 1, 0.) | ||||||
|  |       , gamma(RestartLength + 1, 0.) | ||||||
|  |       , c(RestartLength + 1, 0.) | ||||||
|  |       , s(RestartLength + 1, 0.) {}; | ||||||
|  |  | ||||||
|  |   void operator()(LinearOperatorBase<Field> &LinOp, const Field &src, Field &psi) { | ||||||
|  |  | ||||||
|  |     std::cout << GridLogWarning << "This algorithm currently doesn't differ from regular GMRES" << std::endl; | ||||||
|  |  | ||||||
|  |     psi.Checkerboard() = src.Checkerboard(); | ||||||
|  |     conformable(psi, src); | ||||||
|  |  | ||||||
|  |     RealD guess = norm2(psi); | ||||||
|  |     assert(std::isnan(guess) == 0); | ||||||
|  |  | ||||||
|  |     RealD cp; | ||||||
|  |     RealD ssq = norm2(src); | ||||||
|  |     RealD rsq = Tolerance * Tolerance * ssq; | ||||||
|  |  | ||||||
|  |     Field r(src.Grid()); | ||||||
|  |  | ||||||
|  |     std::cout << std::setprecision(4) << std::scientific; | ||||||
|  |     std::cout << GridLogIterative << "CommunicationAvoidingGeneralisedMinimalResidual: guess " << guess << std::endl; | ||||||
|  |     std::cout << GridLogIterative << "CommunicationAvoidingGeneralisedMinimalResidual:   src " << ssq   << std::endl; | ||||||
|  |  | ||||||
|  |     MatrixTimer.Reset(); | ||||||
|  |     LinalgTimer.Reset(); | ||||||
|  |     QrTimer.Reset(); | ||||||
|  |     CompSolutionTimer.Reset(); | ||||||
|  |  | ||||||
|  |     GridStopWatch SolverTimer; | ||||||
|  |     SolverTimer.Start(); | ||||||
|  |  | ||||||
|  |     IterationCount = 0; | ||||||
|  |  | ||||||
|  |     for (int k=0; k<MaxNumberOfRestarts; k++) { | ||||||
|  |  | ||||||
|  |       cp = outerLoopBody(LinOp, src, psi, rsq); | ||||||
|  |  | ||||||
|  |       // Stopping condition | ||||||
|  |       if (cp <= rsq) { | ||||||
|  |  | ||||||
|  |         SolverTimer.Stop(); | ||||||
|  |  | ||||||
|  |         LinOp.Op(psi,r); | ||||||
|  |         axpy(r,-1.0,src,r); | ||||||
|  |  | ||||||
|  |         RealD srcnorm       = sqrt(ssq); | ||||||
|  |         RealD resnorm       = sqrt(norm2(r)); | ||||||
|  |         RealD true_residual = resnorm / srcnorm; | ||||||
|  |  | ||||||
|  |         std::cout << GridLogMessage        << "CommunicationAvoidingGeneralisedMinimalResidual: Converged on iteration " << IterationCount | ||||||
|  |                   << " computed residual " << sqrt(cp / ssq) | ||||||
|  |                   << " true residual "     << true_residual | ||||||
|  |                   << " target "            << Tolerance << std::endl; | ||||||
|  |  | ||||||
|  |         std::cout << GridLogMessage << "CAGMRES Time elapsed: Total   " <<       SolverTimer.Elapsed() << std::endl; | ||||||
|  |         std::cout << GridLogMessage << "CAGMRES Time elapsed: Matrix  " <<       MatrixTimer.Elapsed() << std::endl; | ||||||
|  |         std::cout << GridLogMessage << "CAGMRES Time elapsed: Linalg  " <<       LinalgTimer.Elapsed() << std::endl; | ||||||
|  |         std::cout << GridLogMessage << "CAGMRES Time elapsed: QR      " <<           QrTimer.Elapsed() << std::endl; | ||||||
|  |         std::cout << GridLogMessage << "CAGMRES Time elapsed: CompSol " << CompSolutionTimer.Elapsed() << std::endl; | ||||||
|  |         return; | ||||||
|  |       } | ||||||
|  |     } | ||||||
|  |  | ||||||
|  |     std::cout << GridLogMessage << "CommunicationAvoidingGeneralisedMinimalResidual did NOT converge" << std::endl; | ||||||
|  |  | ||||||
|  |     if (ErrorOnNoConverge) | ||||||
|  |       assert(0); | ||||||
|  |   } | ||||||
|  |  | ||||||
|  |   RealD outerLoopBody(LinearOperatorBase<Field> &LinOp, const Field &src, Field &psi, RealD rsq) { | ||||||
|  |  | ||||||
|  |     RealD cp = 0; | ||||||
|  |  | ||||||
|  |     Field w(src.Grid()); | ||||||
|  |     Field r(src.Grid()); | ||||||
|  |  | ||||||
|  |     // this should probably be made a class member so that it is only allocated once, not in every restart | ||||||
|  |     std::vector<Field> v(RestartLength + 1, src.Grid()); for (auto &elem : v) elem = Zero(); | ||||||
|  |  | ||||||
|  |     MatrixTimer.Start(); | ||||||
|  |     LinOp.Op(psi, w); | ||||||
|  |     MatrixTimer.Stop(); | ||||||
|  |  | ||||||
|  |     LinalgTimer.Start(); | ||||||
|  |     r = src - w; | ||||||
|  |  | ||||||
|  |     gamma[0] = sqrt(norm2(r)); | ||||||
|  |  | ||||||
|  |     ComplexD scale = 1.0/gamma[0]; | ||||||
|  |     v[0] = scale * r; | ||||||
|  |  | ||||||
|  |     LinalgTimer.Stop(); | ||||||
|  |  | ||||||
|  |     for (int i=0; i<RestartLength; i++) { | ||||||
|  |  | ||||||
|  |       IterationCount++; | ||||||
|  |  | ||||||
|  |       arnoldiStep(LinOp, v, w, i); | ||||||
|  |  | ||||||
|  |       qrUpdate(i); | ||||||
|  |  | ||||||
|  |       cp = norm(gamma[i+1]); | ||||||
|  |  | ||||||
|  |       std::cout << GridLogIterative << "CommunicationAvoidingGeneralisedMinimalResidual: Iteration " << IterationCount | ||||||
|  |                 << " residual " << cp << " target " << rsq << std::endl; | ||||||
|  |  | ||||||
|  |       if ((i == RestartLength - 1) || (IterationCount == MaxIterations) || (cp <= rsq)) { | ||||||
|  |  | ||||||
|  |         computeSolution(v, psi, i); | ||||||
|  |  | ||||||
|  |         return cp; | ||||||
|  |       } | ||||||
|  |     } | ||||||
|  |  | ||||||
|  |     assert(0); // Never reached | ||||||
|  |     return cp; | ||||||
|  |   } | ||||||
|  |  | ||||||
|  |   void arnoldiStep(LinearOperatorBase<Field> &LinOp, std::vector<Field> &v, Field &w, int iter) { | ||||||
|  |  | ||||||
|  |     MatrixTimer.Start(); | ||||||
|  |     LinOp.Op(v[iter], w); | ||||||
|  |     MatrixTimer.Stop(); | ||||||
|  |  | ||||||
|  |     LinalgTimer.Start(); | ||||||
|  |     for (int i = 0; i <= iter; ++i) { | ||||||
|  |       H(iter, i) = innerProduct(v[i], w); | ||||||
|  |       w = w - ComplexD(H(iter, i)) * v[i]; | ||||||
|  |     } | ||||||
|  |  | ||||||
|  |     H(iter, iter + 1) = sqrt(norm2(w)); | ||||||
|  |     v[iter + 1] = ComplexD(1. / H(iter, iter + 1)) * w; | ||||||
|  |     LinalgTimer.Stop(); | ||||||
|  |   } | ||||||
|  |  | ||||||
|  |   void qrUpdate(int iter) { | ||||||
|  |  | ||||||
|  |     QrTimer.Start(); | ||||||
|  |     for (int i = 0; i < iter ; ++i) { | ||||||
|  |       auto tmp       = -s[i] * ComplexD(H(iter, i)) + c[i] * ComplexD(H(iter, i + 1)); | ||||||
|  |       H(iter, i)     = conjugate(c[i]) * ComplexD(H(iter, i)) + conjugate(s[i]) * ComplexD(H(iter, i + 1)); | ||||||
|  |       H(iter, i + 1) = tmp; | ||||||
|  |     } | ||||||
|  |  | ||||||
|  |     // Compute new Givens Rotation | ||||||
|  |     auto nu     = sqrt(std::norm(H(iter, iter)) + std::norm(H(iter, iter + 1))); | ||||||
|  |     c[iter]     = H(iter, iter) / nu; | ||||||
|  |     s[iter]     = H(iter, iter + 1) / nu; | ||||||
|  |  | ||||||
|  |     // Apply new Givens rotation | ||||||
|  |     H(iter, iter)     = nu; | ||||||
|  |     H(iter, iter + 1) = 0.; | ||||||
|  |  | ||||||
|  |     gamma[iter + 1] = -s[iter] * gamma[iter]; | ||||||
|  |     gamma[iter]     = conjugate(c[iter]) * gamma[iter]; | ||||||
|  |     QrTimer.Stop(); | ||||||
|  |   } | ||||||
|  |  | ||||||
|  |   void computeSolution(std::vector<Field> const &v, Field &psi, int iter) { | ||||||
|  |  | ||||||
|  |     CompSolutionTimer.Start(); | ||||||
|  |     for (int i = iter; i >= 0; i--) { | ||||||
|  |       y[i] = gamma[i]; | ||||||
|  |       for (int k = i + 1; k <= iter; k++) | ||||||
|  |         y[i] = y[i] - ComplexD(H(k, i)) * y[k]; | ||||||
|  |       y[i] = y[i] / ComplexD(H(i, i)); | ||||||
|  |     } | ||||||
|  |  | ||||||
|  |     for (int i = 0; i <= iter; i++) | ||||||
|  |       psi = psi + v[i] * y[i]; | ||||||
|  |     CompSolutionTimer.Stop(); | ||||||
|  |   } | ||||||
|  | }; | ||||||
|  | } | ||||||
|  | #endif | ||||||
							
								
								
									
										203
									
								
								Grid/algorithms/iterative/ConjugateGradient.h
									
									
									
									
									
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										203
									
								
								Grid/algorithms/iterative/ConjugateGradient.h
									
									
									
									
									
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							| @@ -0,0 +1,203 @@ | |||||||
|  | /************************************************************************************* | ||||||
|  |  | ||||||
|  | Grid physics library, www.github.com/paboyle/Grid | ||||||
|  |  | ||||||
|  | Source file: ./lib/algorithms/iterative/ConjugateGradient.h | ||||||
|  |  | ||||||
|  | Copyright (C) 2015 | ||||||
|  |  | ||||||
|  | Author: Azusa Yamaguchi <ayamaguc@staffmail.ed.ac.uk> | ||||||
|  | Author: Peter Boyle <paboyle@ph.ed.ac.uk> | ||||||
|  | Author: paboyle <paboyle@ph.ed.ac.uk> | ||||||
|  |  | ||||||
|  | This program is free software; you can redistribute it and/or modify | ||||||
|  | it under the terms of the GNU General Public License as published by | ||||||
|  | the Free Software Foundation; either version 2 of the License, or | ||||||
|  | (at your option) any later version. | ||||||
|  |  | ||||||
|  | This program is distributed in the hope that it will be useful, | ||||||
|  | but WITHOUT ANY WARRANTY; without even the implied warranty of | ||||||
|  | MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the | ||||||
|  | GNU General Public License for more details. | ||||||
|  |  | ||||||
|  | You should have received a copy of the GNU General Public License along | ||||||
|  | with this program; if not, write to the Free Software Foundation, Inc., | ||||||
|  | 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. | ||||||
|  |  | ||||||
|  | See the full license in the file "LICENSE" in the top level distribution | ||||||
|  | directory | ||||||
|  | *************************************************************************************/ | ||||||
|  | 			   /*  END LEGAL */ | ||||||
|  | #ifndef GRID_CONJUGATE_GRADIENT_H | ||||||
|  | #define GRID_CONJUGATE_GRADIENT_H | ||||||
|  |  | ||||||
|  | NAMESPACE_BEGIN(Grid); | ||||||
|  |  | ||||||
|  | ///////////////////////////////////////////////////////////// | ||||||
|  | // Base classes for iterative processes based on operators | ||||||
|  | // single input vec, single output vec. | ||||||
|  | ///////////////////////////////////////////////////////////// | ||||||
|  |  | ||||||
|  | template <class Field> | ||||||
|  | class ConjugateGradient : public OperatorFunction<Field> { | ||||||
|  | public: | ||||||
|  |  | ||||||
|  |   using OperatorFunction<Field>::operator(); | ||||||
|  |  | ||||||
|  |   bool ErrorOnNoConverge;  // throw an assert when the CG fails to converge. | ||||||
|  |                            // Defaults true. | ||||||
|  |   RealD Tolerance; | ||||||
|  |   Integer MaxIterations; | ||||||
|  |   Integer IterationsToComplete; //Number of iterations the CG took to finish. Filled in upon completion | ||||||
|  |   RealD TrueResidual; | ||||||
|  |    | ||||||
|  |   ConjugateGradient(RealD tol, Integer maxit, bool err_on_no_conv = true) | ||||||
|  |     : Tolerance(tol), | ||||||
|  |       MaxIterations(maxit), | ||||||
|  |       ErrorOnNoConverge(err_on_no_conv){}; | ||||||
|  |  | ||||||
|  |   void operator()(LinearOperatorBase<Field> &Linop, const Field &src, Field &psi) { | ||||||
|  |  | ||||||
|  |     psi.Checkerboard() = src.Checkerboard(); | ||||||
|  |  | ||||||
|  |     conformable(psi, src); | ||||||
|  |  | ||||||
|  |     RealD cp, c, a, d, b, ssq, qq; | ||||||
|  |     //RealD b_pred; | ||||||
|  |  | ||||||
|  |     Field p(src); | ||||||
|  |     Field mmp(src); | ||||||
|  |     Field r(src); | ||||||
|  |  | ||||||
|  |     // Initial residual computation & set up | ||||||
|  |     RealD guess = norm2(psi); | ||||||
|  |     assert(std::isnan(guess) == 0); | ||||||
|  |      | ||||||
|  |     Linop.HermOpAndNorm(psi, mmp, d, b); | ||||||
|  |      | ||||||
|  |     r = src - mmp; | ||||||
|  |     p = r; | ||||||
|  |  | ||||||
|  |     a = norm2(p); | ||||||
|  |     cp = a; | ||||||
|  |     ssq = norm2(src); | ||||||
|  |  | ||||||
|  |     // Handle trivial case of zero src | ||||||
|  |     if (ssq == 0.){ | ||||||
|  |       psi = Zero(); | ||||||
|  |       IterationsToComplete = 1; | ||||||
|  |       TrueResidual = 0.; | ||||||
|  |       return; | ||||||
|  |     } | ||||||
|  |  | ||||||
|  |     std::cout << GridLogIterative << std::setprecision(8) << "ConjugateGradient: guess " << guess << std::endl; | ||||||
|  |     std::cout << GridLogIterative << std::setprecision(8) << "ConjugateGradient:   src " << ssq << std::endl; | ||||||
|  |     std::cout << GridLogIterative << std::setprecision(8) << "ConjugateGradient:    mp " << d << std::endl; | ||||||
|  |     std::cout << GridLogIterative << std::setprecision(8) << "ConjugateGradient:   mmp " << b << std::endl; | ||||||
|  |     std::cout << GridLogIterative << std::setprecision(8) << "ConjugateGradient:  cp,r " << cp << std::endl; | ||||||
|  |     std::cout << GridLogIterative << std::setprecision(8) << "ConjugateGradient:     p " << a << std::endl; | ||||||
|  |  | ||||||
|  |     RealD rsq = Tolerance * Tolerance * ssq; | ||||||
|  |  | ||||||
|  |     // Check if guess is really REALLY good :) | ||||||
|  |     if (cp <= rsq) { | ||||||
|  |       TrueResidual = std::sqrt(a/ssq); | ||||||
|  |       std::cout << GridLogMessage << "ConjugateGradient guess is converged already " << std::endl; | ||||||
|  |       IterationsToComplete = 0;	 | ||||||
|  |       return; | ||||||
|  |     } | ||||||
|  |  | ||||||
|  |     std::cout << GridLogIterative << std::setprecision(8) | ||||||
|  |               << "ConjugateGradient: k=0 residual " << cp << " target " << rsq << std::endl; | ||||||
|  |  | ||||||
|  |     GridStopWatch LinalgTimer; | ||||||
|  |     GridStopWatch InnerTimer; | ||||||
|  |     GridStopWatch AxpyNormTimer; | ||||||
|  |     GridStopWatch LinearCombTimer; | ||||||
|  |     GridStopWatch MatrixTimer; | ||||||
|  |     GridStopWatch SolverTimer; | ||||||
|  |  | ||||||
|  |     SolverTimer.Start(); | ||||||
|  |     int k; | ||||||
|  |     for (k = 1; k <= MaxIterations; k++) { | ||||||
|  |       c = cp; | ||||||
|  |  | ||||||
|  |       MatrixTimer.Start(); | ||||||
|  |       Linop.HermOp(p, mmp); | ||||||
|  |       MatrixTimer.Stop(); | ||||||
|  |  | ||||||
|  |       LinalgTimer.Start(); | ||||||
|  |  | ||||||
|  |       InnerTimer.Start(); | ||||||
|  |       ComplexD dc  = innerProduct(p,mmp); | ||||||
|  |       InnerTimer.Stop(); | ||||||
|  |       d = dc.real(); | ||||||
|  |       a = c / d; | ||||||
|  |  | ||||||
|  |       AxpyNormTimer.Start(); | ||||||
|  |       cp = axpy_norm(r, -a, mmp, r); | ||||||
|  |       AxpyNormTimer.Stop(); | ||||||
|  |       b = cp / c; | ||||||
|  |  | ||||||
|  |       LinearCombTimer.Start(); | ||||||
|  |       { | ||||||
|  | 	autoView( psi_v , psi, AcceleratorWrite); | ||||||
|  | 	autoView( p_v   , p,   AcceleratorWrite); | ||||||
|  | 	autoView( r_v   , r,   AcceleratorWrite); | ||||||
|  | 	accelerator_for(ss,p_v.size(), Field::vector_object::Nsimd(),{ | ||||||
|  | 	    coalescedWrite(psi_v[ss], a      *  p_v(ss) + psi_v(ss)); | ||||||
|  | 	    coalescedWrite(p_v[ss]  , b      *  p_v(ss) + r_v  (ss)); | ||||||
|  | 	}); | ||||||
|  |       } | ||||||
|  |       LinearCombTimer.Stop(); | ||||||
|  |       LinalgTimer.Stop(); | ||||||
|  |  | ||||||
|  |       std::cout << GridLogIterative << "ConjugateGradient: Iteration " << k | ||||||
|  |                 << " residual " << sqrt(cp/ssq) << " target " << Tolerance << std::endl; | ||||||
|  |  | ||||||
|  |       // Stopping condition | ||||||
|  |       if (cp <= rsq) { | ||||||
|  |         SolverTimer.Stop(); | ||||||
|  |         Linop.HermOpAndNorm(psi, mmp, d, qq); | ||||||
|  |         p = mmp - src; | ||||||
|  |  | ||||||
|  |         RealD srcnorm = std::sqrt(norm2(src)); | ||||||
|  |         RealD resnorm = std::sqrt(norm2(p)); | ||||||
|  |         RealD true_residual = resnorm / srcnorm; | ||||||
|  |  | ||||||
|  |         std::cout << GridLogMessage << "ConjugateGradient Converged on iteration " << k  | ||||||
|  | 		  << "\tComputed residual " << std::sqrt(cp / ssq) | ||||||
|  | 		  << "\tTrue residual " << true_residual | ||||||
|  | 		  << "\tTarget " << Tolerance << std::endl; | ||||||
|  |  | ||||||
|  |         std::cout << GridLogIterative << "Time breakdown "<<std::endl; | ||||||
|  | 	std::cout << GridLogIterative << "\tElapsed    " << SolverTimer.Elapsed() <<std::endl; | ||||||
|  | 	std::cout << GridLogIterative << "\tMatrix     " << MatrixTimer.Elapsed() <<std::endl; | ||||||
|  | 	std::cout << GridLogIterative << "\tLinalg     " << LinalgTimer.Elapsed() <<std::endl; | ||||||
|  | 	std::cout << GridLogIterative << "\tInner      " << InnerTimer.Elapsed() <<std::endl; | ||||||
|  | 	std::cout << GridLogIterative << "\tAxpyNorm   " << AxpyNormTimer.Elapsed() <<std::endl; | ||||||
|  | 	std::cout << GridLogIterative << "\tLinearComb " << LinearCombTimer.Elapsed() <<std::endl; | ||||||
|  |  | ||||||
|  |         if (ErrorOnNoConverge) assert(true_residual / Tolerance < 10000.0); | ||||||
|  |  | ||||||
|  | 	IterationsToComplete = k;	 | ||||||
|  | 	TrueResidual = true_residual; | ||||||
|  |  | ||||||
|  |         return; | ||||||
|  |       } | ||||||
|  |     } | ||||||
|  |     // Failed. Calculate true residual before giving up                                                          | ||||||
|  |     Linop.HermOpAndNorm(psi, mmp, d, qq); | ||||||
|  |     p = mmp - src; | ||||||
|  |  | ||||||
|  |     TrueResidual = sqrt(norm2(p)/ssq); | ||||||
|  |  | ||||||
|  |     std::cout << GridLogMessage << "ConjugateGradient did NOT converge "<<k<<" / "<< MaxIterations<< std::endl; | ||||||
|  |  | ||||||
|  |     if (ErrorOnNoConverge) assert(0); | ||||||
|  |     IterationsToComplete = k; | ||||||
|  |  | ||||||
|  |   } | ||||||
|  | }; | ||||||
|  | NAMESPACE_END(Grid); | ||||||
|  | #endif | ||||||
							
								
								
									
										162
									
								
								Grid/algorithms/iterative/ConjugateGradientMixedPrec.h
									
									
									
									
									
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										162
									
								
								Grid/algorithms/iterative/ConjugateGradientMixedPrec.h
									
									
									
									
									
										Normal file
									
								
							| @@ -0,0 +1,162 @@ | |||||||
|  | /************************************************************************************* | ||||||
|  |  | ||||||
|  |     Grid physics library, www.github.com/paboyle/Grid  | ||||||
|  |  | ||||||
|  |     Source file: ./lib/algorithms/iterative/ConjugateGradientMixedPrec.h | ||||||
|  |  | ||||||
|  |     Copyright (C) 2015 | ||||||
|  |  | ||||||
|  | Author: Christopher Kelly <ckelly@phys.columbia.edu> | ||||||
|  |  | ||||||
|  |     This program is free software; you can redistribute it and/or modify | ||||||
|  |     it under the terms of the GNU General Public License as published by | ||||||
|  |     the Free Software Foundation; either version 2 of the License, or | ||||||
|  |     (at your option) any later version. | ||||||
|  |  | ||||||
|  |     This program is distributed in the hope that it will be useful, | ||||||
|  |     but WITHOUT ANY WARRANTY; without even the implied warranty of | ||||||
|  |     MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the | ||||||
|  |     GNU General Public License for more details. | ||||||
|  |  | ||||||
|  |     You should have received a copy of the GNU General Public License along | ||||||
|  |     with this program; if not, write to the Free Software Foundation, Inc., | ||||||
|  |     51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. | ||||||
|  |  | ||||||
|  |     See the full license in the file "LICENSE" in the top level distribution directory | ||||||
|  | *************************************************************************************/ | ||||||
|  | /*  END LEGAL */ | ||||||
|  | #ifndef GRID_CONJUGATE_GRADIENT_MIXED_PREC_H | ||||||
|  | #define GRID_CONJUGATE_GRADIENT_MIXED_PREC_H | ||||||
|  |  | ||||||
|  | NAMESPACE_BEGIN(Grid); | ||||||
|  |  | ||||||
|  |   //Mixed precision restarted defect correction CG | ||||||
|  |   template<class FieldD,class FieldF,  | ||||||
|  |     typename std::enable_if< getPrecision<FieldD>::value == 2, int>::type = 0, | ||||||
|  |     typename std::enable_if< getPrecision<FieldF>::value == 1, int>::type = 0>  | ||||||
|  |   class MixedPrecisionConjugateGradient : public LinearFunction<FieldD> { | ||||||
|  |   public: | ||||||
|  |     using LinearFunction<FieldD>::operator(); | ||||||
|  |     RealD   Tolerance; | ||||||
|  |     RealD   InnerTolerance; //Initial tolerance for inner CG. Defaults to Tolerance but can be changed | ||||||
|  |     Integer MaxInnerIterations; | ||||||
|  |     Integer MaxOuterIterations; | ||||||
|  |     GridBase* SinglePrecGrid; //Grid for single-precision fields | ||||||
|  |     RealD OuterLoopNormMult; //Stop the outer loop and move to a final double prec solve when the residual is OuterLoopNormMult * Tolerance | ||||||
|  |     LinearOperatorBase<FieldF> &Linop_f; | ||||||
|  |     LinearOperatorBase<FieldD> &Linop_d; | ||||||
|  |  | ||||||
|  |     Integer TotalInnerIterations; //Number of inner CG iterations | ||||||
|  |     Integer TotalOuterIterations; //Number of restarts | ||||||
|  |     Integer TotalFinalStepIterations; //Number of CG iterations in final patch-up step | ||||||
|  |  | ||||||
|  |     //Option to speed up *inner single precision* solves using a LinearFunction that produces a guess | ||||||
|  |     LinearFunction<FieldF> *guesser; | ||||||
|  |      | ||||||
|  |     MixedPrecisionConjugateGradient(RealD tol,  | ||||||
|  | 				    Integer maxinnerit,  | ||||||
|  | 				    Integer maxouterit,  | ||||||
|  | 				    GridBase* _sp_grid,  | ||||||
|  | 				    LinearOperatorBase<FieldF> &_Linop_f,  | ||||||
|  | 				    LinearOperatorBase<FieldD> &_Linop_d) : | ||||||
|  |       Linop_f(_Linop_f), Linop_d(_Linop_d), | ||||||
|  |       Tolerance(tol), InnerTolerance(tol), MaxInnerIterations(maxinnerit), MaxOuterIterations(maxouterit), SinglePrecGrid(_sp_grid), | ||||||
|  |       OuterLoopNormMult(100.), guesser(NULL){ }; | ||||||
|  |  | ||||||
|  |     void useGuesser(LinearFunction<FieldF> &g){ | ||||||
|  |       guesser = &g; | ||||||
|  |     } | ||||||
|  |    | ||||||
|  |   void operator() (const FieldD &src_d_in, FieldD &sol_d){ | ||||||
|  |     TotalInnerIterations = 0; | ||||||
|  | 	 | ||||||
|  |     GridStopWatch TotalTimer; | ||||||
|  |     TotalTimer.Start(); | ||||||
|  |      | ||||||
|  |     int cb = src_d_in.Checkerboard(); | ||||||
|  |     sol_d.Checkerboard() = cb; | ||||||
|  |      | ||||||
|  |     RealD src_norm = norm2(src_d_in); | ||||||
|  |     RealD stop = src_norm * Tolerance*Tolerance; | ||||||
|  |  | ||||||
|  |     GridBase* DoublePrecGrid = src_d_in.Grid(); | ||||||
|  |     FieldD tmp_d(DoublePrecGrid); | ||||||
|  |     tmp_d.Checkerboard() = cb; | ||||||
|  |      | ||||||
|  |     FieldD tmp2_d(DoublePrecGrid); | ||||||
|  |     tmp2_d.Checkerboard() = cb; | ||||||
|  |      | ||||||
|  |     FieldD src_d(DoublePrecGrid); | ||||||
|  |     src_d = src_d_in; //source for next inner iteration, computed from residual during operation | ||||||
|  |      | ||||||
|  |     RealD inner_tol = InnerTolerance; | ||||||
|  |      | ||||||
|  |     FieldF src_f(SinglePrecGrid); | ||||||
|  |     src_f.Checkerboard() = cb; | ||||||
|  |      | ||||||
|  |     FieldF sol_f(SinglePrecGrid); | ||||||
|  |     sol_f.Checkerboard() = cb; | ||||||
|  |      | ||||||
|  |     ConjugateGradient<FieldF> CG_f(inner_tol, MaxInnerIterations); | ||||||
|  |     CG_f.ErrorOnNoConverge = false; | ||||||
|  |  | ||||||
|  |     GridStopWatch InnerCGtimer; | ||||||
|  |  | ||||||
|  |     GridStopWatch PrecChangeTimer; | ||||||
|  |      | ||||||
|  |     Integer &outer_iter = TotalOuterIterations; //so it will be equal to the final iteration count | ||||||
|  |        | ||||||
|  |     for(outer_iter = 0; outer_iter < MaxOuterIterations; outer_iter++){ | ||||||
|  |       //Compute double precision rsd and also new RHS vector. | ||||||
|  |       Linop_d.HermOp(sol_d, tmp_d); | ||||||
|  |       RealD norm = axpy_norm(src_d, -1., tmp_d, src_d_in); //src_d is residual vector | ||||||
|  |        | ||||||
|  |       std::cout<<GridLogMessage<<"MixedPrecisionConjugateGradient: Outer iteration " <<outer_iter<<" residual "<< norm<< " target "<< stop<<std::endl; | ||||||
|  |  | ||||||
|  |       if(norm < OuterLoopNormMult * stop){ | ||||||
|  | 	std::cout<<GridLogMessage<<"MixedPrecisionConjugateGradient: Outer iteration converged on iteration " <<outer_iter <<std::endl; | ||||||
|  | 	break; | ||||||
|  |       } | ||||||
|  |       while(norm * inner_tol * inner_tol < stop) inner_tol *= 2;  // inner_tol = sqrt(stop/norm) ?? | ||||||
|  |  | ||||||
|  |       PrecChangeTimer.Start(); | ||||||
|  |       precisionChange(src_f, src_d); | ||||||
|  |       PrecChangeTimer.Stop(); | ||||||
|  |        | ||||||
|  |       sol_f = Zero(); | ||||||
|  |  | ||||||
|  |       //Optionally improve inner solver guess (eg using known eigenvectors) | ||||||
|  |       if(guesser != NULL) | ||||||
|  | 	(*guesser)(src_f, sol_f); | ||||||
|  |  | ||||||
|  |       //Inner CG | ||||||
|  |       CG_f.Tolerance = inner_tol; | ||||||
|  |       InnerCGtimer.Start(); | ||||||
|  |       CG_f(Linop_f, src_f, sol_f); | ||||||
|  |       InnerCGtimer.Stop(); | ||||||
|  |       TotalInnerIterations += CG_f.IterationsToComplete; | ||||||
|  |        | ||||||
|  |       //Convert sol back to double and add to double prec solution | ||||||
|  |       PrecChangeTimer.Start(); | ||||||
|  |       precisionChange(tmp_d, sol_f); | ||||||
|  |       PrecChangeTimer.Stop(); | ||||||
|  |        | ||||||
|  |       axpy(sol_d, 1.0, tmp_d, sol_d); | ||||||
|  |     } | ||||||
|  |      | ||||||
|  |     //Final trial CG | ||||||
|  |     std::cout<<GridLogMessage<<"MixedPrecisionConjugateGradient: Starting final patch-up double-precision solve"<<std::endl; | ||||||
|  |      | ||||||
|  |     ConjugateGradient<FieldD> CG_d(Tolerance, MaxInnerIterations); | ||||||
|  |     CG_d(Linop_d, src_d_in, sol_d); | ||||||
|  |     TotalFinalStepIterations = CG_d.IterationsToComplete; | ||||||
|  |  | ||||||
|  |     TotalTimer.Stop(); | ||||||
|  |     std::cout<<GridLogMessage<<"MixedPrecisionConjugateGradient: Inner CG iterations " << TotalInnerIterations << " Restarts " << TotalOuterIterations << " Final CG iterations " << TotalFinalStepIterations << std::endl; | ||||||
|  |     std::cout<<GridLogMessage<<"MixedPrecisionConjugateGradient: Total time " << TotalTimer.Elapsed() << " Precision change " << PrecChangeTimer.Elapsed() << " Inner CG total " << InnerCGtimer.Elapsed() << std::endl; | ||||||
|  |   } | ||||||
|  | }; | ||||||
|  |  | ||||||
|  | NAMESPACE_END(Grid); | ||||||
|  |  | ||||||
|  | #endif | ||||||
							
								
								
									
										342
									
								
								Grid/algorithms/iterative/ConjugateGradientMultiShift.h
									
									
									
									
									
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										342
									
								
								Grid/algorithms/iterative/ConjugateGradientMultiShift.h
									
									
									
									
									
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							| @@ -0,0 +1,342 @@ | |||||||
|  | /************************************************************************************* | ||||||
|  |  | ||||||
|  |     Grid physics library, www.github.com/paboyle/Grid  | ||||||
|  |  | ||||||
|  |     Source file: ./lib/algorithms/iterative/ConjugateGradientMultiShift.h | ||||||
|  |  | ||||||
|  |     Copyright (C) 2015 | ||||||
|  |  | ||||||
|  | Author: Azusa Yamaguchi <ayamaguc@staffmail.ed.ac.uk> | ||||||
|  | Author: Peter Boyle <paboyle@ph.ed.ac.uk> | ||||||
|  |  | ||||||
|  |     This program is free software; you can redistribute it and/or modify | ||||||
|  |     it under the terms of the GNU General Public License as published by | ||||||
|  |     the Free Software Foundation; either version 2 of the License, or | ||||||
|  |     (at your option) any later version. | ||||||
|  |  | ||||||
|  |     This program is distributed in the hope that it will be useful, | ||||||
|  |     but WITHOUT ANY WARRANTY; without even the implied warranty of | ||||||
|  |     MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the | ||||||
|  |     GNU General Public License for more details. | ||||||
|  |  | ||||||
|  |     You should have received a copy of the GNU General Public License along | ||||||
|  |     with this program; if not, write to the Free Software Foundation, Inc., | ||||||
|  |     51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. | ||||||
|  |  | ||||||
|  |     See the full license in the file "LICENSE" in the top level distribution directory | ||||||
|  | *************************************************************************************/ | ||||||
|  | /*  END LEGAL */ | ||||||
|  | #ifndef GRID_CONJUGATE_MULTI_SHIFT_GRADIENT_H | ||||||
|  | #define GRID_CONJUGATE_MULTI_SHIFT_GRADIENT_H | ||||||
|  |  | ||||||
|  | NAMESPACE_BEGIN(Grid); | ||||||
|  |  | ||||||
|  | ///////////////////////////////////////////////////////////// | ||||||
|  | // Base classes for iterative processes based on operators | ||||||
|  | // single input vec, single output vec. | ||||||
|  | ///////////////////////////////////////////////////////////// | ||||||
|  |  | ||||||
|  | template<class Field>  | ||||||
|  | class ConjugateGradientMultiShift : public OperatorMultiFunction<Field>, | ||||||
|  | 				    public OperatorFunction<Field> | ||||||
|  | { | ||||||
|  | public:                                                 | ||||||
|  |  | ||||||
|  |   using OperatorFunction<Field>::operator(); | ||||||
|  |  | ||||||
|  |   RealD   Tolerance; | ||||||
|  |   Integer MaxIterations; | ||||||
|  |   Integer IterationsToComplete; //Number of iterations the CG took to finish. Filled in upon completion | ||||||
|  |   std::vector<int> IterationsToCompleteShift;  // Iterations for this shift | ||||||
|  |   int verbose; | ||||||
|  |   MultiShiftFunction shifts; | ||||||
|  |   std::vector<RealD> TrueResidualShift; | ||||||
|  |  | ||||||
|  |   ConjugateGradientMultiShift(Integer maxit,MultiShiftFunction &_shifts) :  | ||||||
|  |     MaxIterations(maxit), | ||||||
|  |     shifts(_shifts) | ||||||
|  |   {  | ||||||
|  |     verbose=1; | ||||||
|  |     IterationsToCompleteShift.resize(_shifts.order); | ||||||
|  |     TrueResidualShift.resize(_shifts.order); | ||||||
|  |   } | ||||||
|  |  | ||||||
|  |   void operator() (LinearOperatorBase<Field> &Linop, const Field &src, Field &psi) | ||||||
|  |   { | ||||||
|  |     GridBase *grid = src.Grid(); | ||||||
|  |     int nshift = shifts.order; | ||||||
|  |     std::vector<Field> results(nshift,grid); | ||||||
|  |     (*this)(Linop,src,results,psi); | ||||||
|  |   } | ||||||
|  |   void operator() (LinearOperatorBase<Field> &Linop, const Field &src, std::vector<Field> &results, Field &psi) | ||||||
|  |   { | ||||||
|  |     int nshift = shifts.order; | ||||||
|  |  | ||||||
|  |     (*this)(Linop,src,results); | ||||||
|  |    | ||||||
|  |     psi = shifts.norm*src; | ||||||
|  |     for(int i=0;i<nshift;i++){ | ||||||
|  |       psi = psi + shifts.residues[i]*results[i]; | ||||||
|  |     } | ||||||
|  |  | ||||||
|  |     return; | ||||||
|  |   } | ||||||
|  |  | ||||||
|  |   void operator() (LinearOperatorBase<Field> &Linop, const Field &src, std::vector<Field> &psi) | ||||||
|  |   { | ||||||
|  |    | ||||||
|  |     GridBase *grid = src.Grid(); | ||||||
|  |    | ||||||
|  |     //////////////////////////////////////////////////////////////////////// | ||||||
|  |     // Convenience references to the info stored in "MultiShiftFunction" | ||||||
|  |     //////////////////////////////////////////////////////////////////////// | ||||||
|  |     int nshift = shifts.order; | ||||||
|  |  | ||||||
|  |     std::vector<RealD> &mass(shifts.poles); // Make references to array in "shifts" | ||||||
|  |     std::vector<RealD> &mresidual(shifts.tolerances); | ||||||
|  |     std::vector<RealD> alpha(nshift,1.0); | ||||||
|  |     std::vector<Field>   ps(nshift,grid);// Search directions | ||||||
|  |  | ||||||
|  |     assert(psi.size()==nshift); | ||||||
|  |     assert(mass.size()==nshift); | ||||||
|  |     assert(mresidual.size()==nshift); | ||||||
|  |    | ||||||
|  |     // dynamic sized arrays on stack; 2d is a pain with vector | ||||||
|  |     RealD  bs[nshift]; | ||||||
|  |     RealD  rsq[nshift]; | ||||||
|  |     RealD  z[nshift][2]; | ||||||
|  |     int     converged[nshift]; | ||||||
|  |    | ||||||
|  |     const int       primary =0; | ||||||
|  |    | ||||||
|  |     //Primary shift fields CG iteration | ||||||
|  |     RealD a,b,c,d; | ||||||
|  |     RealD cp,bp,qq; //prev | ||||||
|  |    | ||||||
|  |     // Matrix mult fields | ||||||
|  |     Field r(grid); | ||||||
|  |     Field p(grid); | ||||||
|  |     Field tmp(grid); | ||||||
|  |     Field mmp(grid); | ||||||
|  |    | ||||||
|  |     // Check lightest mass | ||||||
|  |     for(int s=0;s<nshift;s++){ | ||||||
|  |       assert( mass[s]>= mass[primary] ); | ||||||
|  |       converged[s]=0; | ||||||
|  |     } | ||||||
|  |    | ||||||
|  |     // Wire guess to zero | ||||||
|  |     // Residuals "r" are src | ||||||
|  |     // First search direction "p" is also src | ||||||
|  |     cp = norm2(src); | ||||||
|  |  | ||||||
|  |     // Handle trivial case of zero src. | ||||||
|  |     if( cp == 0. ){ | ||||||
|  |       for(int s=0;s<nshift;s++){ | ||||||
|  | 	psi[s] = Zero(); | ||||||
|  | 	IterationsToCompleteShift[s] = 1; | ||||||
|  | 	TrueResidualShift[s] = 0.; | ||||||
|  |       } | ||||||
|  |       return; | ||||||
|  |     } | ||||||
|  |  | ||||||
|  |     for(int s=0;s<nshift;s++){ | ||||||
|  |       rsq[s] = cp * mresidual[s] * mresidual[s]; | ||||||
|  |       std::cout<<GridLogMessage<<"ConjugateGradientMultiShift: shift "<<s | ||||||
|  | 	       <<" target resid "<<rsq[s]<<std::endl; | ||||||
|  |       ps[s] = src; | ||||||
|  |     } | ||||||
|  |     // r and p for primary | ||||||
|  |     r=src; | ||||||
|  |     p=src; | ||||||
|  |    | ||||||
|  |     //MdagM+m[0] | ||||||
|  |     Linop.HermOpAndNorm(p,mmp,d,qq); | ||||||
|  |     axpy(mmp,mass[0],p,mmp); | ||||||
|  |     RealD rn = norm2(p); | ||||||
|  |     d += rn*mass[0]; | ||||||
|  |    | ||||||
|  |     // have verified that inner product of  | ||||||
|  |     // p and mmp is equal to d after this since | ||||||
|  |     // the d computation is tricky | ||||||
|  |     //  qq = real(innerProduct(p,mmp)); | ||||||
|  |     //  std::cout<<GridLogMessage << "debug equal ?  qq "<<qq<<" d "<< d<<std::endl; | ||||||
|  |    | ||||||
|  |     b = -cp /d; | ||||||
|  |    | ||||||
|  |     // Set up the various shift variables | ||||||
|  |     int       iz=0; | ||||||
|  |     z[0][1-iz] = 1.0; | ||||||
|  |     z[0][iz]   = 1.0; | ||||||
|  |     bs[0]      = b; | ||||||
|  |     for(int s=1;s<nshift;s++){ | ||||||
|  |       z[s][1-iz] = 1.0; | ||||||
|  |       z[s][iz]   = 1.0/( 1.0 - b*(mass[s]-mass[0])); | ||||||
|  |       bs[s]      = b*z[s][iz];  | ||||||
|  |     } | ||||||
|  |    | ||||||
|  |     // r += b[0] A.p[0] | ||||||
|  |     // c= norm(r) | ||||||
|  |     c=axpy_norm(r,b,mmp,r); | ||||||
|  |    | ||||||
|  |     for(int s=0;s<nshift;s++) { | ||||||
|  |       axpby(psi[s],0.,-bs[s]*alpha[s],src,src); | ||||||
|  |     } | ||||||
|  |    | ||||||
|  |   /////////////////////////////////////// | ||||||
|  |   // Timers | ||||||
|  |   /////////////////////////////////////// | ||||||
|  |   GridStopWatch AXPYTimer; | ||||||
|  |   GridStopWatch ShiftTimer; | ||||||
|  |   GridStopWatch QRTimer; | ||||||
|  |   GridStopWatch MatrixTimer; | ||||||
|  |   GridStopWatch SolverTimer; | ||||||
|  |   SolverTimer.Start(); | ||||||
|  |    | ||||||
|  |     // Iteration loop | ||||||
|  |     int k; | ||||||
|  |    | ||||||
|  |     for (k=1;k<=MaxIterations;k++){ | ||||||
|  |      | ||||||
|  |       a = c /cp; | ||||||
|  |     AXPYTimer.Start(); | ||||||
|  |       axpy(p,a,p,r); | ||||||
|  |     AXPYTimer.Stop(); | ||||||
|  |      | ||||||
|  |       // Note to self - direction ps is iterated seperately | ||||||
|  |       // for each shift. Does not appear to have any scope | ||||||
|  |       // for avoiding linear algebra in "single" case. | ||||||
|  |       //  | ||||||
|  |       // However SAME r is used. Could load "r" and update | ||||||
|  |       // ALL ps[s]. 2/3 Bandwidth saving | ||||||
|  |       // New Kernel: Load r, vector of coeffs, vector of pointers ps | ||||||
|  |     AXPYTimer.Start(); | ||||||
|  |       for(int s=0;s<nshift;s++){ | ||||||
|  | 	if ( ! converged[s] ) {  | ||||||
|  | 	  if (s==0){ | ||||||
|  | 	    axpy(ps[s],a,ps[s],r); | ||||||
|  | 	  } else{ | ||||||
|  | 	    RealD as =a *z[s][iz]*bs[s] /(z[s][1-iz]*b); | ||||||
|  | 	    axpby(ps[s],z[s][iz],as,r,ps[s]); | ||||||
|  | 	  } | ||||||
|  | 	} | ||||||
|  |       } | ||||||
|  |     AXPYTimer.Stop(); | ||||||
|  |      | ||||||
|  |       cp=c; | ||||||
|  |     MatrixTimer.Start();   | ||||||
|  |     //Linop.HermOpAndNorm(p,mmp,d,qq); // d is used | ||||||
|  |     // The below is faster on KNL | ||||||
|  |     Linop.HermOp(p,mmp);  | ||||||
|  |     d=real(innerProduct(p,mmp)); | ||||||
|  |      | ||||||
|  |     MatrixTimer.Stop();   | ||||||
|  |  | ||||||
|  |     AXPYTimer.Start(); | ||||||
|  |       axpy(mmp,mass[0],p,mmp); | ||||||
|  |     AXPYTimer.Stop(); | ||||||
|  |       RealD rn = norm2(p); | ||||||
|  |       d += rn*mass[0]; | ||||||
|  |      | ||||||
|  |       bp=b; | ||||||
|  |       b=-cp/d; | ||||||
|  |      | ||||||
|  |     AXPYTimer.Start(); | ||||||
|  |       c=axpy_norm(r,b,mmp,r); | ||||||
|  |     AXPYTimer.Stop(); | ||||||
|  |  | ||||||
|  |       // Toggle the recurrence history | ||||||
|  |       bs[0] = b; | ||||||
|  |       iz = 1-iz; | ||||||
|  |     ShiftTimer.Start(); | ||||||
|  |       for(int s=1;s<nshift;s++){ | ||||||
|  | 	if((!converged[s])){ | ||||||
|  | 	  RealD z0 = z[s][1-iz]; | ||||||
|  | 	  RealD z1 = z[s][iz]; | ||||||
|  | 	  z[s][iz] = z0*z1*bp | ||||||
|  | 	    / (b*a*(z1-z0) + z1*bp*(1- (mass[s]-mass[0])*b));  | ||||||
|  | 	  bs[s] = b*z[s][iz]/z0; // NB sign  rel to Mike | ||||||
|  | 	} | ||||||
|  |       } | ||||||
|  |     ShiftTimer.Stop(); | ||||||
|  |      | ||||||
|  |       for(int s=0;s<nshift;s++){ | ||||||
|  | 	int ss = s; | ||||||
|  | 	// Scope for optimisation here in case of "single". | ||||||
|  | 	// Could load psi[0] and pull all ps[s] in. | ||||||
|  | 	//      if ( single ) ss=primary; | ||||||
|  | 	// Bandwith saving in single case is Ls * 3 -> 2+Ls, so ~ 3x saving | ||||||
|  | 	// Pipelined CG gain: | ||||||
|  | 	// | ||||||
|  | 	// New Kernel: Load r, vector of coeffs, vector of pointers ps | ||||||
|  | 	// New Kernel: Load psi[0], vector of coeffs, vector of pointers ps | ||||||
|  | 	// If can predict the coefficient bs then we can fuse these and avoid write reread cyce | ||||||
|  | 	//  on ps[s]. | ||||||
|  | 	// Before:  3 x npole  + 3 x npole | ||||||
|  | 	// After :  2 x npole (ps[s])        => 3x speed up of multishift CG. | ||||||
|  |        | ||||||
|  | 	if( (!converged[s]) ) {  | ||||||
|  | 	  axpy(psi[ss],-bs[s]*alpha[s],ps[s],psi[ss]); | ||||||
|  | 	} | ||||||
|  |       } | ||||||
|  |      | ||||||
|  |       // Convergence checks | ||||||
|  |       int all_converged = 1; | ||||||
|  |       for(int s=0;s<nshift;s++){ | ||||||
|  |        | ||||||
|  | 	if ( (!converged[s]) ){ | ||||||
|  | 	  IterationsToCompleteShift[s] = k; | ||||||
|  | 	 | ||||||
|  | 	  RealD css  = c * z[s][iz]* z[s][iz]; | ||||||
|  | 	 | ||||||
|  | 	  if(css<rsq[s]){ | ||||||
|  | 	    if ( ! converged[s] ) | ||||||
|  | 	      std::cout<<GridLogMessage<<"ConjugateGradientMultiShift k="<<k<<" Shift "<<s<<" has converged"<<std::endl; | ||||||
|  | 	    converged[s]=1; | ||||||
|  | 	  } else { | ||||||
|  | 	    all_converged=0; | ||||||
|  | 	  } | ||||||
|  |  | ||||||
|  | 	} | ||||||
|  |       } | ||||||
|  |      | ||||||
|  |       if ( all_converged ){ | ||||||
|  |  | ||||||
|  |     SolverTimer.Stop(); | ||||||
|  |  | ||||||
|  |  | ||||||
|  | 	std::cout<<GridLogMessage<< "CGMultiShift: All shifts have converged iteration "<<k<<std::endl; | ||||||
|  | 	std::cout<<GridLogMessage<< "CGMultiShift: Checking solutions"<<std::endl; | ||||||
|  |        | ||||||
|  | 	// Check answers  | ||||||
|  | 	for(int s=0; s < nshift; s++) {  | ||||||
|  | 	  Linop.HermOpAndNorm(psi[s],mmp,d,qq); | ||||||
|  | 	  axpy(tmp,mass[s],psi[s],mmp); | ||||||
|  | 	  axpy(r,-alpha[s],src,tmp); | ||||||
|  | 	  RealD rn = norm2(r); | ||||||
|  | 	  RealD cn = norm2(src); | ||||||
|  | 	  TrueResidualShift[s] = std::sqrt(rn/cn); | ||||||
|  | 	  std::cout<<GridLogMessage<<"CGMultiShift: shift["<<s<<"] true residual "<< TrueResidualShift[s] <<std::endl; | ||||||
|  | 	} | ||||||
|  |  | ||||||
|  |       std::cout << GridLogMessage << "Time Breakdown "<<std::endl; | ||||||
|  |       std::cout << GridLogMessage << "\tElapsed    " << SolverTimer.Elapsed()     <<std::endl; | ||||||
|  |       std::cout << GridLogMessage << "\tAXPY    " << AXPYTimer.Elapsed()     <<std::endl; | ||||||
|  |       std::cout << GridLogMessage << "\tMarix    " << MatrixTimer.Elapsed()     <<std::endl; | ||||||
|  |       std::cout << GridLogMessage << "\tShift    " << ShiftTimer.Elapsed()     <<std::endl; | ||||||
|  |  | ||||||
|  |       IterationsToComplete = k;	 | ||||||
|  |  | ||||||
|  | 	return; | ||||||
|  |       } | ||||||
|  |  | ||||||
|  |     | ||||||
|  |     } | ||||||
|  |     // ugly hack | ||||||
|  |     std::cout<<GridLogMessage<<"CG multi shift did not converge"<<std::endl; | ||||||
|  |     //  assert(0); | ||||||
|  |   } | ||||||
|  |  | ||||||
|  | }; | ||||||
|  | NAMESPACE_END(Grid); | ||||||
|  | #endif | ||||||
							
								
								
									
										258
									
								
								Grid/algorithms/iterative/ConjugateGradientReliableUpdate.h
									
									
									
									
									
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								Grid/algorithms/iterative/ConjugateGradientReliableUpdate.h
									
									
									
									
									
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							| @@ -0,0 +1,258 @@ | |||||||
|  | /************************************************************************************* | ||||||
|  |  | ||||||
|  |     Grid physics library, www.github.com/paboyle/Grid  | ||||||
|  |  | ||||||
|  |     Source file: ./lib/algorithms/iterative/ConjugateGradientReliableUpdate.h | ||||||
|  |  | ||||||
|  |     Copyright (C) 2015 | ||||||
|  |  | ||||||
|  | Author: Christopher Kelly <ckelly@phys.columbia.edu> | ||||||
|  |  | ||||||
|  |     This program is free software; you can redistribute it and/or modify | ||||||
|  |     it under the terms of the GNU General Public License as published by | ||||||
|  |     the Free Software Foundation; either version 2 of the License, or | ||||||
|  |     (at your option) any later version. | ||||||
|  |  | ||||||
|  |     This program is distributed in the hope that it will be useful, | ||||||
|  |     but WITHOUT ANY WARRANTY; without even the implied warranty of | ||||||
|  |     MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the | ||||||
|  |     GNU General Public License for more details. | ||||||
|  |  | ||||||
|  |     You should have received a copy of the GNU General Public License along | ||||||
|  |     with this program; if not, write to the Free Software Foundation, Inc., | ||||||
|  |     51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. | ||||||
|  |  | ||||||
|  |     See the full license in the file "LICENSE" in the top level distribution directory | ||||||
|  | *************************************************************************************/ | ||||||
|  | /*  END LEGAL */ | ||||||
|  | #ifndef GRID_CONJUGATE_GRADIENT_RELIABLE_UPDATE_H | ||||||
|  | #define GRID_CONJUGATE_GRADIENT_RELIABLE_UPDATE_H | ||||||
|  |  | ||||||
|  | NAMESPACE_BEGIN(Grid); | ||||||
|  |  | ||||||
|  | template<class FieldD,class FieldF,  | ||||||
|  | 	 typename std::enable_if< getPrecision<FieldD>::value == 2, int>::type = 0, | ||||||
|  | 	 typename std::enable_if< getPrecision<FieldF>::value == 1, int>::type = 0>  | ||||||
|  | class ConjugateGradientReliableUpdate : public LinearFunction<FieldD> { | ||||||
|  | public: | ||||||
|  |   bool ErrorOnNoConverge;  // throw an assert when the CG fails to converge. | ||||||
|  |   // Defaults true. | ||||||
|  |   RealD Tolerance; | ||||||
|  |   Integer MaxIterations; | ||||||
|  |   Integer IterationsToComplete; //Number of iterations the CG took to finish. Filled in upon completion | ||||||
|  |   Integer ReliableUpdatesPerformed; | ||||||
|  |  | ||||||
|  |   bool DoFinalCleanup; //Final DP cleanup, defaults to true | ||||||
|  |   Integer IterationsToCleanup; //Final DP cleanup step iterations | ||||||
|  |      | ||||||
|  |   LinearOperatorBase<FieldF> &Linop_f; | ||||||
|  |   LinearOperatorBase<FieldD> &Linop_d; | ||||||
|  |   GridBase* SinglePrecGrid; | ||||||
|  |   RealD Delta; //reliable update parameter | ||||||
|  |  | ||||||
|  |   //Optional ability to switch to a different linear operator once the tolerance reaches a certain point. Useful for single/half -> single/single | ||||||
|  |   LinearOperatorBase<FieldF> *Linop_fallback; | ||||||
|  |   RealD fallback_transition_tol; | ||||||
|  |  | ||||||
|  |      | ||||||
|  |   ConjugateGradientReliableUpdate(RealD tol, Integer maxit, RealD _delta, GridBase* _sp_grid, LinearOperatorBase<FieldF> &_Linop_f, LinearOperatorBase<FieldD> &_Linop_d, bool err_on_no_conv = true) | ||||||
|  |     : Tolerance(tol), | ||||||
|  |       MaxIterations(maxit), | ||||||
|  |       Delta(_delta), | ||||||
|  |       Linop_f(_Linop_f), | ||||||
|  |       Linop_d(_Linop_d), | ||||||
|  |       SinglePrecGrid(_sp_grid), | ||||||
|  |       ErrorOnNoConverge(err_on_no_conv), | ||||||
|  |       DoFinalCleanup(true), | ||||||
|  |       Linop_fallback(NULL) | ||||||
|  |   {}; | ||||||
|  |  | ||||||
|  |   void setFallbackLinop(LinearOperatorBase<FieldF> &_Linop_fallback, const RealD _fallback_transition_tol){ | ||||||
|  |     Linop_fallback = &_Linop_fallback; | ||||||
|  |     fallback_transition_tol = _fallback_transition_tol;       | ||||||
|  |   } | ||||||
|  |      | ||||||
|  |   void operator()(const FieldD &src, FieldD &psi) { | ||||||
|  |     LinearOperatorBase<FieldF> *Linop_f_use = &Linop_f; | ||||||
|  |     bool using_fallback = false; | ||||||
|  |        | ||||||
|  |     psi.Checkerboard() = src.Checkerboard(); | ||||||
|  |     conformable(psi, src); | ||||||
|  |  | ||||||
|  |     RealD cp, c, a, d, b, ssq, qq, b_pred; | ||||||
|  |  | ||||||
|  |     FieldD p(src); | ||||||
|  |     FieldD mmp(src); | ||||||
|  |     FieldD r(src); | ||||||
|  |  | ||||||
|  |     // Initial residual computation & set up | ||||||
|  |     RealD guess = norm2(psi); | ||||||
|  |     assert(std::isnan(guess) == 0); | ||||||
|  |      | ||||||
|  |     Linop_d.HermOpAndNorm(psi, mmp, d, b); | ||||||
|  |      | ||||||
|  |     r = src - mmp; | ||||||
|  |     p = r; | ||||||
|  |  | ||||||
|  |     a = norm2(p); | ||||||
|  |     cp = a; | ||||||
|  |     ssq = norm2(src); | ||||||
|  |  | ||||||
|  |     std::cout << GridLogIterative << std::setprecision(4) << "ConjugateGradientReliableUpdate: guess " << guess << std::endl; | ||||||
|  |     std::cout << GridLogIterative << std::setprecision(4) << "ConjugateGradientReliableUpdate:   src " << ssq << std::endl; | ||||||
|  |     std::cout << GridLogIterative << std::setprecision(4) << "ConjugateGradientReliableUpdate:    mp " << d << std::endl; | ||||||
|  |     std::cout << GridLogIterative << std::setprecision(4) << "ConjugateGradientReliableUpdate:   mmp " << b << std::endl; | ||||||
|  |     std::cout << GridLogIterative << std::setprecision(4) << "ConjugateGradientReliableUpdate:  cp,r " << cp << std::endl; | ||||||
|  |     std::cout << GridLogIterative << std::setprecision(4) << "ConjugateGradientReliableUpdate:     p " << a << std::endl; | ||||||
|  |  | ||||||
|  |     RealD rsq = Tolerance * Tolerance * ssq; | ||||||
|  |  | ||||||
|  |     // Check if guess is really REALLY good :) | ||||||
|  |     if (cp <= rsq) { | ||||||
|  |       std::cout << GridLogMessage << "ConjugateGradientReliableUpdate guess was REALLY good\n"; | ||||||
|  |       std::cout << GridLogMessage << "\tComputed residual " << std::sqrt(cp / ssq)<<std::endl; | ||||||
|  |       return; | ||||||
|  |     } | ||||||
|  |  | ||||||
|  |     //Single prec initialization | ||||||
|  |     FieldF r_f(SinglePrecGrid); | ||||||
|  |     r_f.Checkerboard() = r.Checkerboard(); | ||||||
|  |     precisionChange(r_f, r); | ||||||
|  |  | ||||||
|  |     FieldF psi_f(r_f); | ||||||
|  |     psi_f = Zero(); | ||||||
|  |  | ||||||
|  |     FieldF p_f(r_f); | ||||||
|  |     FieldF mmp_f(r_f); | ||||||
|  |  | ||||||
|  |     RealD MaxResidSinceLastRelUp = cp; //initial residual     | ||||||
|  |      | ||||||
|  |     std::cout << GridLogIterative << std::setprecision(4) | ||||||
|  | 	      << "ConjugateGradient: k=0 residual " << cp << " target " << rsq << std::endl; | ||||||
|  |  | ||||||
|  |     GridStopWatch LinalgTimer; | ||||||
|  |     GridStopWatch MatrixTimer; | ||||||
|  |     GridStopWatch SolverTimer; | ||||||
|  |  | ||||||
|  |     SolverTimer.Start(); | ||||||
|  |     int k = 0; | ||||||
|  |     int l = 0; | ||||||
|  |      | ||||||
|  |     for (k = 1; k <= MaxIterations; k++) { | ||||||
|  |       c = cp; | ||||||
|  |  | ||||||
|  |       MatrixTimer.Start(); | ||||||
|  |       Linop_f_use->HermOpAndNorm(p_f, mmp_f, d, qq); | ||||||
|  |       MatrixTimer.Stop(); | ||||||
|  |  | ||||||
|  |       LinalgTimer.Start(); | ||||||
|  |  | ||||||
|  |       a = c / d; | ||||||
|  |       b_pred = a * (a * qq - d) / c; | ||||||
|  |  | ||||||
|  |       cp = axpy_norm(r_f, -a, mmp_f, r_f); | ||||||
|  |       b = cp / c; | ||||||
|  |  | ||||||
|  |       // Fuse these loops ; should be really easy | ||||||
|  |       psi_f = a * p_f + psi_f; | ||||||
|  |       //p_f = p_f * b + r_f; | ||||||
|  |  | ||||||
|  |       LinalgTimer.Stop(); | ||||||
|  |  | ||||||
|  |       std::cout << GridLogIterative << "ConjugateGradientReliableUpdate: Iteration " << k | ||||||
|  | 		<< " residual " << cp << " target " << rsq << std::endl; | ||||||
|  |       std::cout << GridLogDebug << "a = "<< a << " b_pred = "<< b_pred << "  b = "<< b << std::endl; | ||||||
|  |       std::cout << GridLogDebug << "qq = "<< qq << " d = "<< d << "  c = "<< c << std::endl; | ||||||
|  |  | ||||||
|  |       if(cp > MaxResidSinceLastRelUp){ | ||||||
|  | 	std::cout << GridLogIterative << "ConjugateGradientReliableUpdate: updating MaxResidSinceLastRelUp : " << MaxResidSinceLastRelUp << " -> " << cp << std::endl; | ||||||
|  | 	MaxResidSinceLastRelUp = cp; | ||||||
|  |       } | ||||||
|  | 	   | ||||||
|  |       // Stopping condition | ||||||
|  |       if (cp <= rsq) { | ||||||
|  | 	//Although not written in the paper, I assume that I have to add on the final solution | ||||||
|  | 	precisionChange(mmp, psi_f); | ||||||
|  | 	psi = psi + mmp; | ||||||
|  | 	 | ||||||
|  | 	 | ||||||
|  | 	SolverTimer.Stop(); | ||||||
|  | 	Linop_d.HermOpAndNorm(psi, mmp, d, qq); | ||||||
|  | 	p = mmp - src; | ||||||
|  |  | ||||||
|  | 	RealD srcnorm = std::sqrt(norm2(src)); | ||||||
|  | 	RealD resnorm = std::sqrt(norm2(p)); | ||||||
|  | 	RealD true_residual = resnorm / srcnorm; | ||||||
|  |  | ||||||
|  | 	std::cout << GridLogMessage << "ConjugateGradientReliableUpdate Converged on iteration " << k << " after " << l << " reliable updates" << std::endl; | ||||||
|  | 	std::cout << GridLogMessage << "\tComputed residual " << std::sqrt(cp / ssq)<<std::endl; | ||||||
|  | 	std::cout << GridLogMessage << "\tTrue residual " << true_residual<<std::endl; | ||||||
|  | 	std::cout << GridLogMessage << "\tTarget " << Tolerance << std::endl; | ||||||
|  |  | ||||||
|  | 	std::cout << GridLogMessage << "Time breakdown "<<std::endl; | ||||||
|  | 	std::cout << GridLogMessage << "\tElapsed    " << SolverTimer.Elapsed() <<std::endl; | ||||||
|  | 	std::cout << GridLogMessage << "\tMatrix     " << MatrixTimer.Elapsed() <<std::endl; | ||||||
|  | 	std::cout << GridLogMessage << "\tLinalg     " << LinalgTimer.Elapsed() <<std::endl; | ||||||
|  |  | ||||||
|  | 	IterationsToComplete = k;	 | ||||||
|  | 	ReliableUpdatesPerformed = l; | ||||||
|  | 	   | ||||||
|  | 	if(DoFinalCleanup){ | ||||||
|  | 	  //Do a final CG to cleanup | ||||||
|  | 	  std::cout << GridLogMessage << "ConjugateGradientReliableUpdate performing final cleanup.\n"; | ||||||
|  | 	  ConjugateGradient<FieldD> CG(Tolerance,MaxIterations); | ||||||
|  | 	  CG.ErrorOnNoConverge = ErrorOnNoConverge; | ||||||
|  | 	  CG(Linop_d,src,psi); | ||||||
|  | 	  IterationsToCleanup = CG.IterationsToComplete; | ||||||
|  | 	} | ||||||
|  | 	else if (ErrorOnNoConverge) assert(true_residual / Tolerance < 10000.0); | ||||||
|  |  | ||||||
|  | 	std::cout << GridLogMessage << "ConjugateGradientReliableUpdate complete.\n"; | ||||||
|  | 	return; | ||||||
|  |       } | ||||||
|  |       else if(cp < Delta * MaxResidSinceLastRelUp) { //reliable update | ||||||
|  | 	std::cout << GridLogMessage << "ConjugateGradientReliableUpdate " | ||||||
|  | 		  << cp << "(residual) < " << Delta << "(Delta) * " << MaxResidSinceLastRelUp << "(MaxResidSinceLastRelUp) on iteration " << k << " : performing reliable update\n"; | ||||||
|  | 	precisionChange(mmp, psi_f); | ||||||
|  | 	psi = psi + mmp; | ||||||
|  |  | ||||||
|  | 	Linop_d.HermOpAndNorm(psi, mmp, d, qq); | ||||||
|  | 	r = src - mmp; | ||||||
|  |  | ||||||
|  | 	psi_f = Zero(); | ||||||
|  | 	precisionChange(r_f, r); | ||||||
|  | 	cp = norm2(r); | ||||||
|  | 	MaxResidSinceLastRelUp = cp; | ||||||
|  |  | ||||||
|  | 	b = cp/c; | ||||||
|  | 	   | ||||||
|  | 	std::cout << GridLogMessage << "ConjugateGradientReliableUpdate new residual " << cp << std::endl; | ||||||
|  | 	   | ||||||
|  | 	l = l+1; | ||||||
|  |       } | ||||||
|  |  | ||||||
|  |       p_f = p_f * b + r_f; //update search vector after reliable update appears to help convergence | ||||||
|  |  | ||||||
|  |       if(!using_fallback && Linop_fallback != NULL && cp < fallback_transition_tol){ | ||||||
|  | 	std::cout << GridLogMessage << "ConjugateGradientReliableUpdate switching to fallback linear operator on iteration " << k << " at residual " << cp << std::endl; | ||||||
|  | 	Linop_f_use = Linop_fallback; | ||||||
|  | 	using_fallback = true; | ||||||
|  |       } | ||||||
|  |  | ||||||
|  | 	 | ||||||
|  |     } | ||||||
|  |     std::cout << GridLogMessage << "ConjugateGradientReliableUpdate did NOT converge" | ||||||
|  | 	      << std::endl; | ||||||
|  |        | ||||||
|  |     if (ErrorOnNoConverge) assert(0); | ||||||
|  |     IterationsToComplete = k; | ||||||
|  |     ReliableUpdatesPerformed = l;       | ||||||
|  |   }     | ||||||
|  | }; | ||||||
|  |  | ||||||
|  |  | ||||||
|  | NAMESPACE_END(Grid); | ||||||
|  |  | ||||||
|  |  | ||||||
|  |  | ||||||
|  | #endif | ||||||
							
								
								
									
										113
									
								
								Grid/algorithms/iterative/ConjugateResidual.h
									
									
									
									
									
										Normal file
									
								
							
							
						
						
									
										113
									
								
								Grid/algorithms/iterative/ConjugateResidual.h
									
									
									
									
									
										Normal file
									
								
							| @@ -0,0 +1,113 @@ | |||||||
|  | /************************************************************************************* | ||||||
|  |  | ||||||
|  |     Grid physics library, www.github.com/paboyle/Grid  | ||||||
|  |  | ||||||
|  |     Source file: ./lib/algorithms/iterative/ConjugateResidual.h | ||||||
|  |  | ||||||
|  |     Copyright (C) 2015 | ||||||
|  |  | ||||||
|  | Author: Azusa Yamaguchi <ayamaguc@staffmail.ed.ac.uk> | ||||||
|  | Author: Peter Boyle <paboyle@ph.ed.ac.uk> | ||||||
|  |  | ||||||
|  |     This program is free software; you can redistribute it and/or modify | ||||||
|  |     it under the terms of the GNU General Public License as published by | ||||||
|  |     the Free Software Foundation; either version 2 of the License, or | ||||||
|  |     (at your option) any later version. | ||||||
|  |  | ||||||
|  |     This program is distributed in the hope that it will be useful, | ||||||
|  |     but WITHOUT ANY WARRANTY; without even the implied warranty of | ||||||
|  |     MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the | ||||||
|  |     GNU General Public License for more details. | ||||||
|  |  | ||||||
|  |     You should have received a copy of the GNU General Public License along | ||||||
|  |     with this program; if not, write to the Free Software Foundation, Inc., | ||||||
|  |     51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. | ||||||
|  |  | ||||||
|  |     See the full license in the file "LICENSE" in the top level distribution directory | ||||||
|  | *************************************************************************************/ | ||||||
|  | /*  END LEGAL */ | ||||||
|  | #ifndef GRID_CONJUGATE_RESIDUAL_H | ||||||
|  | #define GRID_CONJUGATE_RESIDUAL_H | ||||||
|  |  | ||||||
|  | NAMESPACE_BEGIN(Grid); | ||||||
|  |  | ||||||
|  | ///////////////////////////////////////////////////////////// | ||||||
|  | // Base classes for iterative processes based on operators | ||||||
|  | // single input vec, single output vec. | ||||||
|  | ///////////////////////////////////////////////////////////// | ||||||
|  |  | ||||||
|  | template<class Field>  | ||||||
|  | class ConjugateResidual : public OperatorFunction<Field> { | ||||||
|  | public:                                                 | ||||||
|  |   using OperatorFunction<Field>::operator(); | ||||||
|  |  | ||||||
|  |   RealD   Tolerance; | ||||||
|  |   Integer MaxIterations; | ||||||
|  |   int verbose; | ||||||
|  |  | ||||||
|  |   ConjugateResidual(RealD tol,Integer maxit) : Tolerance(tol), MaxIterations(maxit) {  | ||||||
|  |     verbose=0; | ||||||
|  |   }; | ||||||
|  |  | ||||||
|  |   void operator() (LinearOperatorBase<Field> &Linop,const Field &src, Field &psi){ | ||||||
|  |  | ||||||
|  |     RealD a, b; // c, d; | ||||||
|  |     RealD cp, ssq,rsq; | ||||||
|  |        | ||||||
|  |     RealD rAr, rAAr, rArp; | ||||||
|  |     RealD pAp, pAAp; | ||||||
|  |  | ||||||
|  |     GridBase *grid = src.Grid(); | ||||||
|  |     psi=Zero(); | ||||||
|  |     Field r(grid),  p(grid), Ap(grid), Ar(grid); | ||||||
|  |        | ||||||
|  |     r=src; | ||||||
|  |     p=src; | ||||||
|  |  | ||||||
|  |     Linop.HermOpAndNorm(p,Ap,pAp,pAAp); | ||||||
|  |     Linop.HermOpAndNorm(r,Ar,rAr,rAAr); | ||||||
|  |  | ||||||
|  |     cp =norm2(r); | ||||||
|  |     ssq=norm2(src); | ||||||
|  |     rsq=Tolerance*Tolerance*ssq; | ||||||
|  |  | ||||||
|  |     if (verbose) std::cout<<GridLogMessage<<"ConjugateResidual: iteration " <<0<<" residual "<<cp<< " target"<< rsq<<std::endl; | ||||||
|  |  | ||||||
|  |     for(int k=1;k<MaxIterations;k++){ | ||||||
|  |  | ||||||
|  |       a = rAr/pAAp; | ||||||
|  |  | ||||||
|  |       axpy(psi,a,p,psi); | ||||||
|  |  | ||||||
|  |       cp = axpy_norm(r,-a,Ap,r); | ||||||
|  |  | ||||||
|  |       rArp=rAr; | ||||||
|  |  | ||||||
|  |       Linop.HermOpAndNorm(r,Ar,rAr,rAAr); | ||||||
|  |  | ||||||
|  |       b   =rAr/rArp; | ||||||
|  |   | ||||||
|  |       axpy(p,b,p,r); | ||||||
|  |       pAAp=axpy_norm(Ap,b,Ap,Ar); | ||||||
|  | 	 | ||||||
|  |       if(verbose) std::cout<<GridLogMessage<<"ConjugateResidual: iteration " <<k<<" residual "<<cp<< " target"<< rsq<<std::endl; | ||||||
|  |  | ||||||
|  |       if(cp<rsq) { | ||||||
|  | 	Linop.HermOp(psi,Ap); | ||||||
|  | 	axpy(r,-1.0,src,Ap); | ||||||
|  | 	RealD true_resid = norm2(r)/ssq; | ||||||
|  | 	std::cout<<GridLogMessage<<"ConjugateResidual: Converged on iteration " <<k | ||||||
|  | 		 << " computed residual "<<std::sqrt(cp/ssq) | ||||||
|  | 		 << " true residual "<<std::sqrt(true_resid) | ||||||
|  | 		 << " target "       <<Tolerance <<std::endl; | ||||||
|  | 	return; | ||||||
|  |       } | ||||||
|  |  | ||||||
|  |     } | ||||||
|  |  | ||||||
|  |     std::cout<<GridLogMessage<<"ConjugateResidual did NOT converge"<<std::endl; | ||||||
|  |     assert(0); | ||||||
|  |   } | ||||||
|  | }; | ||||||
|  | NAMESPACE_END(Grid); | ||||||
|  | #endif | ||||||
							
								
								
									
										121
									
								
								Grid/algorithms/iterative/Deflation.h
									
									
									
									
									
										Normal file
									
								
							
							
						
						
									
										121
									
								
								Grid/algorithms/iterative/Deflation.h
									
									
									
									
									
										Normal file
									
								
							| @@ -0,0 +1,121 @@ | |||||||
|  |     /************************************************************************************* | ||||||
|  |  | ||||||
|  |     Grid physics library, www.github.com/paboyle/Grid  | ||||||
|  |  | ||||||
|  |     Source file: ./lib/algorithms/iterative/ImplicitlyRestartedLanczos.h | ||||||
|  |  | ||||||
|  |     Copyright (C) 2015 | ||||||
|  |  | ||||||
|  | Author: Peter Boyle <paboyle@ph.ed.ac.uk> | ||||||
|  |  | ||||||
|  |     This program is free software; you can redistribute it and/or modify | ||||||
|  |     it under the terms of the GNU General Public License as published by | ||||||
|  |     the Free Software Foundation; either version 2 of the License, or | ||||||
|  |     (at your option) any later version. | ||||||
|  |  | ||||||
|  |     This program is distributed in the hope that it will be useful, | ||||||
|  |     but WITHOUT ANY WARRANTY; without even the implied warranty of | ||||||
|  |     MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the | ||||||
|  |     GNU General Public License for more details. | ||||||
|  |  | ||||||
|  |     You should have received a copy of the GNU General Public License along | ||||||
|  |     with this program; if not, write to the Free Software Foundation, Inc., | ||||||
|  |     51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. | ||||||
|  |  | ||||||
|  |     See the full license in the file "LICENSE" in the top level distribution directory | ||||||
|  |     *************************************************************************************/ | ||||||
|  |     /*  END LEGAL */ | ||||||
|  | #ifndef GRID_DEFLATION_H | ||||||
|  | #define GRID_DEFLATION_H | ||||||
|  |  | ||||||
|  | namespace Grid {  | ||||||
|  |  | ||||||
|  | template<class Field> | ||||||
|  | class ZeroGuesser: public LinearFunction<Field> { | ||||||
|  | public: | ||||||
|  |   using LinearFunction<Field>::operator(); | ||||||
|  |     virtual void operator()(const Field &src, Field &guess) { guess = Zero(); }; | ||||||
|  | }; | ||||||
|  | template<class Field> | ||||||
|  | class DoNothingGuesser: public LinearFunction<Field> { | ||||||
|  | public: | ||||||
|  |   using LinearFunction<Field>::operator(); | ||||||
|  |   virtual void operator()(const Field &src, Field &guess) {  }; | ||||||
|  | }; | ||||||
|  | template<class Field> | ||||||
|  | class SourceGuesser: public LinearFunction<Field> { | ||||||
|  | public: | ||||||
|  |   using LinearFunction<Field>::operator(); | ||||||
|  |   virtual void operator()(const Field &src, Field &guess) { guess = src; }; | ||||||
|  | }; | ||||||
|  |  | ||||||
|  | //////////////////////////////// | ||||||
|  | // Fine grid deflation | ||||||
|  | //////////////////////////////// | ||||||
|  | template<class Field> | ||||||
|  | class DeflatedGuesser: public LinearFunction<Field> { | ||||||
|  | private: | ||||||
|  |   const std::vector<Field> &evec; | ||||||
|  |   const std::vector<RealD> &eval; | ||||||
|  |   const unsigned int       N; | ||||||
|  |  | ||||||
|  | public: | ||||||
|  |   using LinearFunction<Field>::operator(); | ||||||
|  |  | ||||||
|  |   DeflatedGuesser(const std::vector<Field> & _evec,const std::vector<RealD> & _eval) | ||||||
|  |   : DeflatedGuesser(_evec, _eval, _evec.size()) | ||||||
|  |   {} | ||||||
|  |  | ||||||
|  |   DeflatedGuesser(const std::vector<Field> & _evec, const std::vector<RealD> & _eval, const unsigned int _N) | ||||||
|  |   : evec(_evec), eval(_eval), N(_N) | ||||||
|  |   { | ||||||
|  |     assert(evec.size()==eval.size()); | ||||||
|  |     assert(N <= evec.size()); | ||||||
|  |   }  | ||||||
|  |  | ||||||
|  |   virtual void operator()(const Field &src,Field &guess) { | ||||||
|  |     guess = Zero(); | ||||||
|  |     for (int i=0;i<N;i++) { | ||||||
|  |       const Field& tmp = evec[i]; | ||||||
|  |       axpy(guess,TensorRemove(innerProduct(tmp,src)) / eval[i],tmp,guess); | ||||||
|  |     } | ||||||
|  |     guess.Checkerboard() = src.Checkerboard(); | ||||||
|  |   } | ||||||
|  | }; | ||||||
|  |  | ||||||
|  | template<class FineField, class CoarseField> | ||||||
|  | class LocalCoherenceDeflatedGuesser: public LinearFunction<FineField> { | ||||||
|  | private: | ||||||
|  |   const std::vector<FineField>   &subspace; | ||||||
|  |   const std::vector<CoarseField> &evec_coarse; | ||||||
|  |   const std::vector<RealD>       &eval_coarse; | ||||||
|  | public: | ||||||
|  |    | ||||||
|  |   using LinearFunction<FineField>::operator(); | ||||||
|  |   LocalCoherenceDeflatedGuesser(const std::vector<FineField>   &_subspace, | ||||||
|  | 				const std::vector<CoarseField> &_evec_coarse, | ||||||
|  | 				const std::vector<RealD>       &_eval_coarse) | ||||||
|  |     : subspace(_subspace),  | ||||||
|  |       evec_coarse(_evec_coarse),  | ||||||
|  |       eval_coarse(_eval_coarse)   | ||||||
|  |   { | ||||||
|  |   } | ||||||
|  |    | ||||||
|  |   void operator()(const FineField &src,FineField &guess) {  | ||||||
|  |     int N = (int)evec_coarse.size(); | ||||||
|  |     CoarseField src_coarse(evec_coarse[0].Grid()); | ||||||
|  |     CoarseField guess_coarse(evec_coarse[0].Grid());    guess_coarse = Zero(); | ||||||
|  |     blockProject(src_coarse,src,subspace);     | ||||||
|  |     for (int i=0;i<N;i++) { | ||||||
|  |       const CoarseField & tmp = evec_coarse[i]; | ||||||
|  |       axpy(guess_coarse,TensorRemove(innerProduct(tmp,src_coarse)) / eval_coarse[i],tmp,guess_coarse); | ||||||
|  |     } | ||||||
|  |     blockPromote(guess_coarse,guess,subspace); | ||||||
|  |     guess.Checkerboard() = src.Checkerboard(); | ||||||
|  |   }; | ||||||
|  | }; | ||||||
|  |  | ||||||
|  |  | ||||||
|  |  | ||||||
|  | } | ||||||
|  | #endif | ||||||
| @@ -0,0 +1,258 @@ | |||||||
|  | /************************************************************************************* | ||||||
|  |  | ||||||
|  | Grid physics library, www.github.com/paboyle/Grid | ||||||
|  |  | ||||||
|  | Source file: ./lib/algorithms/iterative/FlexibleCommunicationAvoidingGeneralisedMinimalResidual.h | ||||||
|  |  | ||||||
|  | Copyright (C) 2015 | ||||||
|  |  | ||||||
|  | Author: Daniel Richtmann <daniel.richtmann@ur.de> | ||||||
|  |  | ||||||
|  | This program is free software; you can redistribute it and/or modify | ||||||
|  | it under the terms of the GNU General Public License as published by | ||||||
|  | the Free Software Foundation; either version 2 of the License, or | ||||||
|  | (at your option) any later version. | ||||||
|  |  | ||||||
|  | This program is distributed in the hope that it will be useful, | ||||||
|  | but WITHOUT ANY WARRANTY; without even the implied warranty of | ||||||
|  | MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the | ||||||
|  | GNU General Public License for more details. | ||||||
|  |  | ||||||
|  | You should have received a copy of the GNU General Public License along | ||||||
|  | with this program; if not, write to the Free Software Foundation, Inc., | ||||||
|  | 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. | ||||||
|  |  | ||||||
|  | See the full license in the file "LICENSE" in the top level distribution | ||||||
|  | directory | ||||||
|  | *************************************************************************************/ | ||||||
|  | /*  END LEGAL */ | ||||||
|  | #ifndef GRID_FLEXIBLE_COMMUNICATION_AVOIDING_GENERALISED_MINIMAL_RESIDUAL_H | ||||||
|  | #define GRID_FLEXIBLE_COMMUNICATION_AVOIDING_GENERALISED_MINIMAL_RESIDUAL_H | ||||||
|  |  | ||||||
|  | namespace Grid { | ||||||
|  |  | ||||||
|  | template<class Field> | ||||||
|  | class FlexibleCommunicationAvoidingGeneralisedMinimalResidual : public OperatorFunction<Field> { | ||||||
|  |  public: | ||||||
|  |   using OperatorFunction<Field>::operator(); | ||||||
|  |  | ||||||
|  |   bool ErrorOnNoConverge; // Throw an assert when FCAGMRES fails to converge, | ||||||
|  |                           // defaults to true | ||||||
|  |  | ||||||
|  |   RealD   Tolerance; | ||||||
|  |  | ||||||
|  |   Integer MaxIterations; | ||||||
|  |   Integer RestartLength; | ||||||
|  |   Integer MaxNumberOfRestarts; | ||||||
|  |   Integer IterationCount; // Number of iterations the FCAGMRES took to finish, | ||||||
|  |                           // filled in upon completion | ||||||
|  |  | ||||||
|  |   GridStopWatch MatrixTimer; | ||||||
|  |   GridStopWatch PrecTimer; | ||||||
|  |   GridStopWatch LinalgTimer; | ||||||
|  |   GridStopWatch QrTimer; | ||||||
|  |   GridStopWatch CompSolutionTimer; | ||||||
|  |  | ||||||
|  |   Eigen::MatrixXcd H; | ||||||
|  |  | ||||||
|  |   std::vector<ComplexD> y; | ||||||
|  |   std::vector<ComplexD> gamma; | ||||||
|  |   std::vector<ComplexD> c; | ||||||
|  |   std::vector<ComplexD> s; | ||||||
|  |  | ||||||
|  |   LinearFunction<Field> &Preconditioner; | ||||||
|  |  | ||||||
|  |   FlexibleCommunicationAvoidingGeneralisedMinimalResidual(RealD   tol, | ||||||
|  |                                                           Integer maxit, | ||||||
|  |                                                           LinearFunction<Field> &Prec, | ||||||
|  |                                                           Integer restart_length, | ||||||
|  |                                                           bool    err_on_no_conv = true) | ||||||
|  |       : Tolerance(tol) | ||||||
|  |       , MaxIterations(maxit) | ||||||
|  |       , RestartLength(restart_length) | ||||||
|  |       , MaxNumberOfRestarts(MaxIterations/RestartLength + ((MaxIterations%RestartLength == 0) ? 0 : 1)) | ||||||
|  |       , ErrorOnNoConverge(err_on_no_conv) | ||||||
|  |       , H(Eigen::MatrixXcd::Zero(RestartLength, RestartLength + 1)) // sizes taken from DD-αAMG code base | ||||||
|  |       , y(RestartLength + 1, 0.) | ||||||
|  |       , gamma(RestartLength + 1, 0.) | ||||||
|  |       , c(RestartLength + 1, 0.) | ||||||
|  |       , s(RestartLength + 1, 0.) | ||||||
|  |       , Preconditioner(Prec) {}; | ||||||
|  |  | ||||||
|  |   void operator()(LinearOperatorBase<Field> &LinOp, const Field &src, Field &psi) { | ||||||
|  |  | ||||||
|  |     std::cout << GridLogWarning << "This algorithm currently doesn't differ from regular FGMRES" << std::endl; | ||||||
|  |  | ||||||
|  |     psi.Checkerboard() = src.Checkerboard(); | ||||||
|  |     conformable(psi, src); | ||||||
|  |  | ||||||
|  |     RealD guess = norm2(psi); | ||||||
|  |     assert(std::isnan(guess) == 0); | ||||||
|  |  | ||||||
|  |     RealD cp; | ||||||
|  |     RealD ssq = norm2(src); | ||||||
|  |     RealD rsq = Tolerance * Tolerance * ssq; | ||||||
|  |  | ||||||
|  |     Field r(src.Grid()); | ||||||
|  |  | ||||||
|  |     std::cout << std::setprecision(4) << std::scientific; | ||||||
|  |     std::cout << GridLogIterative << "FlexibleCommunicationAvoidingGeneralisedMinimalResidual: guess " << guess << std::endl; | ||||||
|  |     std::cout << GridLogIterative << "FlexibleCommunicationAvoidingGeneralisedMinimalResidual:   src " << ssq   << std::endl; | ||||||
|  |  | ||||||
|  |     PrecTimer.Reset(); | ||||||
|  |     MatrixTimer.Reset(); | ||||||
|  |     LinalgTimer.Reset(); | ||||||
|  |     QrTimer.Reset(); | ||||||
|  |     CompSolutionTimer.Reset(); | ||||||
|  |  | ||||||
|  |     GridStopWatch SolverTimer; | ||||||
|  |     SolverTimer.Start(); | ||||||
|  |  | ||||||
|  |     IterationCount = 0; | ||||||
|  |  | ||||||
|  |     for (int k=0; k<MaxNumberOfRestarts; k++) { | ||||||
|  |  | ||||||
|  |       cp = outerLoopBody(LinOp, src, psi, rsq); | ||||||
|  |  | ||||||
|  |       // Stopping condition | ||||||
|  |       if (cp <= rsq) { | ||||||
|  |  | ||||||
|  |         SolverTimer.Stop(); | ||||||
|  |  | ||||||
|  |         LinOp.Op(psi,r); | ||||||
|  |         axpy(r,-1.0,src,r); | ||||||
|  |  | ||||||
|  |         RealD srcnorm       = sqrt(ssq); | ||||||
|  |         RealD resnorm       = sqrt(norm2(r)); | ||||||
|  |         RealD true_residual = resnorm / srcnorm; | ||||||
|  |  | ||||||
|  |         std::cout << GridLogMessage        << "FlexibleCommunicationAvoidingGeneralisedMinimalResidual: Converged on iteration " << IterationCount | ||||||
|  |                   << " computed residual " << sqrt(cp / ssq) | ||||||
|  |                   << " true residual "     << true_residual | ||||||
|  |                   << " target "            << Tolerance << std::endl; | ||||||
|  |  | ||||||
|  |         std::cout << GridLogMessage << "FCAGMRES Time elapsed: Total   " <<       SolverTimer.Elapsed() << std::endl; | ||||||
|  |         std::cout << GridLogMessage << "FCAGMRES Time elapsed: Precon  " <<         PrecTimer.Elapsed() << std::endl; | ||||||
|  |         std::cout << GridLogMessage << "FCAGMRES Time elapsed: Matrix  " <<       MatrixTimer.Elapsed() << std::endl; | ||||||
|  |         std::cout << GridLogMessage << "FCAGMRES Time elapsed: Linalg  " <<       LinalgTimer.Elapsed() << std::endl; | ||||||
|  |         std::cout << GridLogMessage << "FCAGMRES Time elapsed: QR      " <<           QrTimer.Elapsed() << std::endl; | ||||||
|  |         std::cout << GridLogMessage << "FCAGMRES Time elapsed: CompSol " << CompSolutionTimer.Elapsed() << std::endl; | ||||||
|  |         return; | ||||||
|  |       } | ||||||
|  |     } | ||||||
|  |  | ||||||
|  |     std::cout << GridLogMessage << "FlexibleCommunicationAvoidingGeneralisedMinimalResidual did NOT converge" << std::endl; | ||||||
|  |  | ||||||
|  |     if (ErrorOnNoConverge) | ||||||
|  |       assert(0); | ||||||
|  |   } | ||||||
|  |  | ||||||
|  |   RealD outerLoopBody(LinearOperatorBase<Field> &LinOp, const Field &src, Field &psi, RealD rsq) { | ||||||
|  |  | ||||||
|  |     RealD cp = 0; | ||||||
|  |  | ||||||
|  |     Field w(src.Grid()); | ||||||
|  |     Field r(src.Grid()); | ||||||
|  |  | ||||||
|  |     // these should probably be made class members so that they are only allocated once, not in every restart | ||||||
|  |     std::vector<Field> v(RestartLength + 1, src.Grid()); for (auto &elem : v) elem = Zero(); | ||||||
|  |     std::vector<Field> z(RestartLength + 1, src.Grid()); for (auto &elem : z) elem = Zero(); | ||||||
|  |  | ||||||
|  |     MatrixTimer.Start(); | ||||||
|  |     LinOp.Op(psi, w); | ||||||
|  |     MatrixTimer.Stop(); | ||||||
|  |  | ||||||
|  |     LinalgTimer.Start(); | ||||||
|  |     r = src - w; | ||||||
|  |  | ||||||
|  |     gamma[0] = sqrt(norm2(r)); | ||||||
|  |  | ||||||
|  |     v[0] = (1. / gamma[0]) * r; | ||||||
|  |     LinalgTimer.Stop(); | ||||||
|  |  | ||||||
|  |     for (int i=0; i<RestartLength; i++) { | ||||||
|  |  | ||||||
|  |       IterationCount++; | ||||||
|  |  | ||||||
|  |       arnoldiStep(LinOp, v, z, w, i); | ||||||
|  |  | ||||||
|  |       qrUpdate(i); | ||||||
|  |  | ||||||
|  |       cp = norm(gamma[i+1]); | ||||||
|  |  | ||||||
|  |       std::cout << GridLogIterative << "FlexibleCommunicationAvoidingGeneralisedMinimalResidual: Iteration " << IterationCount | ||||||
|  |                 << " residual " << cp << " target " << rsq << std::endl; | ||||||
|  |  | ||||||
|  |       if ((i == RestartLength - 1) || (IterationCount == MaxIterations) || (cp <= rsq)) { | ||||||
|  |  | ||||||
|  |         computeSolution(z, psi, i); | ||||||
|  |  | ||||||
|  |         return cp; | ||||||
|  |       } | ||||||
|  |     } | ||||||
|  |  | ||||||
|  |     assert(0); // Never reached | ||||||
|  |     return cp; | ||||||
|  |   } | ||||||
|  |  | ||||||
|  |   void arnoldiStep(LinearOperatorBase<Field> &LinOp, std::vector<Field> &v, std::vector<Field> &z, Field &w, int iter) { | ||||||
|  |  | ||||||
|  |     PrecTimer.Start(); | ||||||
|  |     Preconditioner(v[iter], z[iter]); | ||||||
|  |     PrecTimer.Stop(); | ||||||
|  |  | ||||||
|  |     MatrixTimer.Start(); | ||||||
|  |     LinOp.Op(z[iter], w); | ||||||
|  |     MatrixTimer.Stop(); | ||||||
|  |  | ||||||
|  |     LinalgTimer.Start(); | ||||||
|  |     for (int i = 0; i <= iter; ++i) { | ||||||
|  |       H(iter, i) = innerProduct(v[i], w); | ||||||
|  |       w = w - ComplexD(H(iter, i)) * v[i]; | ||||||
|  |     } | ||||||
|  |  | ||||||
|  |     H(iter, iter + 1) = sqrt(norm2(w)); | ||||||
|  |     v[iter + 1] = ComplexD(1. / H(iter, iter + 1)) * w; | ||||||
|  |     LinalgTimer.Stop(); | ||||||
|  |   } | ||||||
|  |  | ||||||
|  |   void qrUpdate(int iter) { | ||||||
|  |  | ||||||
|  |     QrTimer.Start(); | ||||||
|  |     for (int i = 0; i < iter ; ++i) { | ||||||
|  |       auto tmp       = -s[i] * ComplexD(H(iter, i)) + c[i] * ComplexD(H(iter, i + 1)); | ||||||
|  |       H(iter, i)     = conjugate(c[i]) * ComplexD(H(iter, i)) + conjugate(s[i]) * ComplexD(H(iter, i + 1)); | ||||||
|  |       H(iter, i + 1) = tmp; | ||||||
|  |     } | ||||||
|  |  | ||||||
|  |     // Compute new Givens Rotation | ||||||
|  |     auto nu = sqrt(std::norm(H(iter, iter)) + std::norm(H(iter, iter + 1))); | ||||||
|  |     c[iter]     = H(iter, iter) / nu; | ||||||
|  |     s[iter]     = H(iter, iter + 1) / nu; | ||||||
|  |  | ||||||
|  |     // Apply new Givens rotation | ||||||
|  |     H(iter, iter)     = nu; | ||||||
|  |     H(iter, iter + 1) = 0.; | ||||||
|  |  | ||||||
|  |     gamma[iter + 1] = -s[iter] * gamma[iter]; | ||||||
|  |     gamma[iter]     = conjugate(c[iter]) * gamma[iter]; | ||||||
|  |     QrTimer.Stop(); | ||||||
|  |   } | ||||||
|  |  | ||||||
|  |   void computeSolution(std::vector<Field> const &z, Field &psi, int iter) { | ||||||
|  |  | ||||||
|  |     CompSolutionTimer.Start(); | ||||||
|  |     for (int i = iter; i >= 0; i--) { | ||||||
|  |       y[i] = gamma[i]; | ||||||
|  |       for (int k = i + 1; k <= iter; k++) | ||||||
|  |         y[i] = y[i] - ComplexD(H(k, i)) * y[k]; | ||||||
|  |       y[i] = y[i] / ComplexD(H(i, i)); | ||||||
|  |     } | ||||||
|  |  | ||||||
|  |     for (int i = 0; i <= iter; i++) | ||||||
|  |       psi = psi + z[i] * y[i]; | ||||||
|  |     CompSolutionTimer.Stop(); | ||||||
|  |   } | ||||||
|  | }; | ||||||
|  | } | ||||||
|  | #endif | ||||||
							
								
								
									
										256
									
								
								Grid/algorithms/iterative/FlexibleGeneralisedMinimalResidual.h
									
									
									
									
									
										Normal file
									
								
							
							
						
						
									
										256
									
								
								Grid/algorithms/iterative/FlexibleGeneralisedMinimalResidual.h
									
									
									
									
									
										Normal file
									
								
							| @@ -0,0 +1,256 @@ | |||||||
|  | /************************************************************************************* | ||||||
|  |  | ||||||
|  | Grid physics library, www.github.com/paboyle/Grid | ||||||
|  |  | ||||||
|  | Source file: ./lib/algorithms/iterative/FlexibleGeneralisedMinimalResidual.h | ||||||
|  |  | ||||||
|  | Copyright (C) 2015 | ||||||
|  |  | ||||||
|  | Author: Daniel Richtmann <daniel.richtmann@ur.de> | ||||||
|  |  | ||||||
|  | This program is free software; you can redistribute it and/or modify | ||||||
|  | it under the terms of the GNU General Public License as published by | ||||||
|  | the Free Software Foundation; either version 2 of the License, or | ||||||
|  | (at your option) any later version. | ||||||
|  |  | ||||||
|  | This program is distributed in the hope that it will be useful, | ||||||
|  | but WITHOUT ANY WARRANTY; without even the implied warranty of | ||||||
|  | MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the | ||||||
|  | GNU General Public License for more details. | ||||||
|  |  | ||||||
|  | You should have received a copy of the GNU General Public License along | ||||||
|  | with this program; if not, write to the Free Software Foundation, Inc., | ||||||
|  | 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. | ||||||
|  |  | ||||||
|  | See the full license in the file "LICENSE" in the top level distribution | ||||||
|  | directory | ||||||
|  | *************************************************************************************/ | ||||||
|  | /*  END LEGAL */ | ||||||
|  | #ifndef GRID_FLEXIBLE_GENERALISED_MINIMAL_RESIDUAL_H | ||||||
|  | #define GRID_FLEXIBLE_GENERALISED_MINIMAL_RESIDUAL_H | ||||||
|  |  | ||||||
|  | namespace Grid { | ||||||
|  |  | ||||||
|  | template<class Field> | ||||||
|  | class FlexibleGeneralisedMinimalResidual : public OperatorFunction<Field> { | ||||||
|  |  public: | ||||||
|  |   using OperatorFunction<Field>::operator(); | ||||||
|  |  | ||||||
|  |   bool ErrorOnNoConverge; // Throw an assert when FGMRES fails to converge, | ||||||
|  |                           // defaults to true | ||||||
|  |  | ||||||
|  |   RealD   Tolerance; | ||||||
|  |  | ||||||
|  |   Integer MaxIterations; | ||||||
|  |   Integer RestartLength; | ||||||
|  |   Integer MaxNumberOfRestarts; | ||||||
|  |   Integer IterationCount; // Number of iterations the FGMRES took to finish, | ||||||
|  |                           // filled in upon completion | ||||||
|  |  | ||||||
|  |   GridStopWatch MatrixTimer; | ||||||
|  |   GridStopWatch PrecTimer; | ||||||
|  |   GridStopWatch LinalgTimer; | ||||||
|  |   GridStopWatch QrTimer; | ||||||
|  |   GridStopWatch CompSolutionTimer; | ||||||
|  |  | ||||||
|  |   Eigen::MatrixXcd H; | ||||||
|  |  | ||||||
|  |   std::vector<ComplexD> y; | ||||||
|  |   std::vector<ComplexD> gamma; | ||||||
|  |   std::vector<ComplexD> c; | ||||||
|  |   std::vector<ComplexD> s; | ||||||
|  |  | ||||||
|  |   LinearFunction<Field> &Preconditioner; | ||||||
|  |  | ||||||
|  |   FlexibleGeneralisedMinimalResidual(RealD   tol, | ||||||
|  |                                      Integer maxit, | ||||||
|  |                                      LinearFunction<Field> &Prec, | ||||||
|  |                                      Integer restart_length, | ||||||
|  |                                      bool    err_on_no_conv = true) | ||||||
|  |       : Tolerance(tol) | ||||||
|  |       , MaxIterations(maxit) | ||||||
|  |       , RestartLength(restart_length) | ||||||
|  |       , MaxNumberOfRestarts(MaxIterations/RestartLength + ((MaxIterations%RestartLength == 0) ? 0 : 1)) | ||||||
|  |       , ErrorOnNoConverge(err_on_no_conv) | ||||||
|  |       , H(Eigen::MatrixXcd::Zero(RestartLength, RestartLength + 1)) // sizes taken from DD-αAMG code base | ||||||
|  |       , y(RestartLength + 1, 0.) | ||||||
|  |       , gamma(RestartLength + 1, 0.) | ||||||
|  |       , c(RestartLength + 1, 0.) | ||||||
|  |       , s(RestartLength + 1, 0.) | ||||||
|  |       , Preconditioner(Prec) {}; | ||||||
|  |  | ||||||
|  |   void operator()(LinearOperatorBase<Field> &LinOp, const Field &src, Field &psi) { | ||||||
|  |  | ||||||
|  |     psi.Checkerboard() = src.Checkerboard(); | ||||||
|  |     conformable(psi, src); | ||||||
|  |  | ||||||
|  |     RealD guess = norm2(psi); | ||||||
|  |     assert(std::isnan(guess) == 0); | ||||||
|  |  | ||||||
|  |     RealD cp; | ||||||
|  |     RealD ssq = norm2(src); | ||||||
|  |     RealD rsq = Tolerance * Tolerance * ssq; | ||||||
|  |  | ||||||
|  |     Field r(src.Grid()); | ||||||
|  |  | ||||||
|  |     std::cout << std::setprecision(4) << std::scientific; | ||||||
|  |     std::cout << GridLogIterative << "FlexibleGeneralisedMinimalResidual: guess " << guess << std::endl; | ||||||
|  |     std::cout << GridLogIterative << "FlexibleGeneralisedMinimalResidual:   src " << ssq   << std::endl; | ||||||
|  |  | ||||||
|  |     PrecTimer.Reset(); | ||||||
|  |     MatrixTimer.Reset(); | ||||||
|  |     LinalgTimer.Reset(); | ||||||
|  |     QrTimer.Reset(); | ||||||
|  |     CompSolutionTimer.Reset(); | ||||||
|  |  | ||||||
|  |     GridStopWatch SolverTimer; | ||||||
|  |     SolverTimer.Start(); | ||||||
|  |  | ||||||
|  |     IterationCount = 0; | ||||||
|  |  | ||||||
|  |     for (int k=0; k<MaxNumberOfRestarts; k++) { | ||||||
|  |  | ||||||
|  |       cp = outerLoopBody(LinOp, src, psi, rsq); | ||||||
|  |  | ||||||
|  |       // Stopping condition | ||||||
|  |       if (cp <= rsq) { | ||||||
|  |  | ||||||
|  |         SolverTimer.Stop(); | ||||||
|  |  | ||||||
|  |         LinOp.Op(psi,r); | ||||||
|  |         axpy(r,-1.0,src,r); | ||||||
|  |  | ||||||
|  |         RealD srcnorm       = sqrt(ssq); | ||||||
|  |         RealD resnorm       = sqrt(norm2(r)); | ||||||
|  |         RealD true_residual = resnorm / srcnorm; | ||||||
|  |  | ||||||
|  |         std::cout << GridLogMessage        << "FlexibleGeneralisedMinimalResidual: Converged on iteration " << IterationCount | ||||||
|  |                   << " computed residual " << sqrt(cp / ssq) | ||||||
|  |                   << " true residual "     << true_residual | ||||||
|  |                   << " target "            << Tolerance << std::endl; | ||||||
|  |  | ||||||
|  |         std::cout << GridLogMessage << "FGMRES Time elapsed: Total   " <<       SolverTimer.Elapsed() << std::endl; | ||||||
|  |         std::cout << GridLogMessage << "FGMRES Time elapsed: Precon  " <<         PrecTimer.Elapsed() << std::endl; | ||||||
|  |         std::cout << GridLogMessage << "FGMRES Time elapsed: Matrix  " <<       MatrixTimer.Elapsed() << std::endl; | ||||||
|  |         std::cout << GridLogMessage << "FGMRES Time elapsed: Linalg  " <<       LinalgTimer.Elapsed() << std::endl; | ||||||
|  |         std::cout << GridLogMessage << "FGMRES Time elapsed: QR      " <<           QrTimer.Elapsed() << std::endl; | ||||||
|  |         std::cout << GridLogMessage << "FGMRES Time elapsed: CompSol " << CompSolutionTimer.Elapsed() << std::endl; | ||||||
|  |         return; | ||||||
|  |       } | ||||||
|  |     } | ||||||
|  |  | ||||||
|  |     std::cout << GridLogMessage << "FlexibleGeneralisedMinimalResidual did NOT converge" << std::endl; | ||||||
|  |  | ||||||
|  |     if (ErrorOnNoConverge) | ||||||
|  |       assert(0); | ||||||
|  |   } | ||||||
|  |  | ||||||
|  |   RealD outerLoopBody(LinearOperatorBase<Field> &LinOp, const Field &src, Field &psi, RealD rsq) { | ||||||
|  |  | ||||||
|  |     RealD cp = 0; | ||||||
|  |  | ||||||
|  |     Field w(src.Grid()); | ||||||
|  |     Field r(src.Grid()); | ||||||
|  |  | ||||||
|  |     // these should probably be made class members so that they are only allocated once, not in every restart | ||||||
|  |     std::vector<Field> v(RestartLength + 1, src.Grid()); for (auto &elem : v) elem = Zero(); | ||||||
|  |     std::vector<Field> z(RestartLength + 1, src.Grid()); for (auto &elem : z) elem = Zero(); | ||||||
|  |  | ||||||
|  |     MatrixTimer.Start(); | ||||||
|  |     LinOp.Op(psi, w); | ||||||
|  |     MatrixTimer.Stop(); | ||||||
|  |  | ||||||
|  |     LinalgTimer.Start(); | ||||||
|  |     r = src - w; | ||||||
|  |  | ||||||
|  |     gamma[0] = sqrt(norm2(r)); | ||||||
|  |  | ||||||
|  |     v[0] = (1. / gamma[0]) * r; | ||||||
|  |     LinalgTimer.Stop(); | ||||||
|  |  | ||||||
|  |     for (int i=0; i<RestartLength; i++) { | ||||||
|  |  | ||||||
|  |       IterationCount++; | ||||||
|  |  | ||||||
|  |       arnoldiStep(LinOp, v, z, w, i); | ||||||
|  |  | ||||||
|  |       qrUpdate(i); | ||||||
|  |  | ||||||
|  |       cp = norm(gamma[i+1]); | ||||||
|  |  | ||||||
|  |       std::cout << GridLogIterative << "FlexibleGeneralisedMinimalResidual: Iteration " << IterationCount | ||||||
|  |                 << " residual " << cp << " target " << rsq << std::endl; | ||||||
|  |  | ||||||
|  |       if ((i == RestartLength - 1) || (IterationCount == MaxIterations) || (cp <= rsq)) { | ||||||
|  |  | ||||||
|  |         computeSolution(z, psi, i); | ||||||
|  |  | ||||||
|  |         return cp; | ||||||
|  |       } | ||||||
|  |     } | ||||||
|  |  | ||||||
|  |     assert(0); // Never reached | ||||||
|  |     return cp; | ||||||
|  |   } | ||||||
|  |  | ||||||
|  |   void arnoldiStep(LinearOperatorBase<Field> &LinOp, std::vector<Field> &v, std::vector<Field> &z, Field &w, int iter) { | ||||||
|  |  | ||||||
|  |     PrecTimer.Start(); | ||||||
|  |     Preconditioner(v[iter], z[iter]); | ||||||
|  |     PrecTimer.Stop(); | ||||||
|  |  | ||||||
|  |     MatrixTimer.Start(); | ||||||
|  |     LinOp.Op(z[iter], w); | ||||||
|  |     MatrixTimer.Stop(); | ||||||
|  |  | ||||||
|  |     LinalgTimer.Start(); | ||||||
|  |     for (int i = 0; i <= iter; ++i) { | ||||||
|  |       H(iter, i) = innerProduct(v[i], w); | ||||||
|  |       w = w - ComplexD(H(iter, i)) * v[i]; | ||||||
|  |     } | ||||||
|  |  | ||||||
|  |     H(iter, iter + 1) = sqrt(norm2(w)); | ||||||
|  |     v[iter + 1] = ComplexD(1. / H(iter, iter + 1)) * w; | ||||||
|  |     LinalgTimer.Stop(); | ||||||
|  |   } | ||||||
|  |  | ||||||
|  |   void qrUpdate(int iter) { | ||||||
|  |  | ||||||
|  |     QrTimer.Start(); | ||||||
|  |     for (int i = 0; i < iter ; ++i) { | ||||||
|  |       auto tmp       = -s[i] * ComplexD(H(iter, i)) + c[i] * ComplexD(H(iter, i + 1)); | ||||||
|  |       H(iter, i)     = conjugate(c[i]) * ComplexD(H(iter, i)) + conjugate(s[i]) * ComplexD(H(iter, i + 1)); | ||||||
|  |       H(iter, i + 1) = tmp; | ||||||
|  |     } | ||||||
|  |  | ||||||
|  |     // Compute new Givens Rotation | ||||||
|  |     auto nu = sqrt(std::norm(H(iter, iter)) + std::norm(H(iter, iter + 1))); | ||||||
|  |     c[iter]     = H(iter, iter) / nu; | ||||||
|  |     s[iter]     = H(iter, iter + 1) / nu; | ||||||
|  |  | ||||||
|  |     // Apply new Givens rotation | ||||||
|  |     H(iter, iter)     = nu; | ||||||
|  |     H(iter, iter + 1) = 0.; | ||||||
|  |  | ||||||
|  |     gamma[iter + 1] = -s[iter] * gamma[iter]; | ||||||
|  |     gamma[iter]     = conjugate(c[iter]) * gamma[iter]; | ||||||
|  |     QrTimer.Stop(); | ||||||
|  |   } | ||||||
|  |  | ||||||
|  |   void computeSolution(std::vector<Field> const &z, Field &psi, int iter) { | ||||||
|  |  | ||||||
|  |     CompSolutionTimer.Start(); | ||||||
|  |     for (int i = iter; i >= 0; i--) { | ||||||
|  |       y[i] = gamma[i]; | ||||||
|  |       for (int k = i + 1; k <= iter; k++) | ||||||
|  |         y[i] = y[i] - ComplexD(H(k, i)) * y[k]; | ||||||
|  |       y[i] = y[i] / ComplexD(H(i, i)); | ||||||
|  |     } | ||||||
|  |  | ||||||
|  |     for (int i = 0; i <= iter; i++) | ||||||
|  |       psi = psi + z[i] * y[i]; | ||||||
|  |     CompSolutionTimer.Stop(); | ||||||
|  |   } | ||||||
|  | }; | ||||||
|  | } | ||||||
|  | #endif | ||||||
							
								
								
									
										244
									
								
								Grid/algorithms/iterative/GeneralisedMinimalResidual.h
									
									
									
									
									
										Normal file
									
								
							
							
						
						
									
										244
									
								
								Grid/algorithms/iterative/GeneralisedMinimalResidual.h
									
									
									
									
									
										Normal file
									
								
							| @@ -0,0 +1,244 @@ | |||||||
|  | /************************************************************************************* | ||||||
|  |  | ||||||
|  | Grid physics library, www.github.com/paboyle/Grid | ||||||
|  |  | ||||||
|  | Source file: ./lib/algorithms/iterative/GeneralisedMinimalResidual.h | ||||||
|  |  | ||||||
|  | Copyright (C) 2015 | ||||||
|  |  | ||||||
|  | Author: Daniel Richtmann <daniel.richtmann@ur.de> | ||||||
|  |  | ||||||
|  | This program is free software; you can redistribute it and/or modify | ||||||
|  | it under the terms of the GNU General Public License as published by | ||||||
|  | the Free Software Foundation; either version 2 of the License, or | ||||||
|  | (at your option) any later version. | ||||||
|  |  | ||||||
|  | This program is distributed in the hope that it will be useful, | ||||||
|  | but WITHOUT ANY WARRANTY; without even the implied warranty of | ||||||
|  | MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the | ||||||
|  | GNU General Public License for more details. | ||||||
|  |  | ||||||
|  | You should have received a copy of the GNU General Public License along | ||||||
|  | with this program; if not, write to the Free Software Foundation, Inc., | ||||||
|  | 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. | ||||||
|  |  | ||||||
|  | See the full license in the file "LICENSE" in the top level distribution | ||||||
|  | directory | ||||||
|  | *************************************************************************************/ | ||||||
|  | /*  END LEGAL */ | ||||||
|  | #ifndef GRID_GENERALISED_MINIMAL_RESIDUAL_H | ||||||
|  | #define GRID_GENERALISED_MINIMAL_RESIDUAL_H | ||||||
|  |  | ||||||
|  | namespace Grid { | ||||||
|  |  | ||||||
|  | template<class Field> | ||||||
|  | class GeneralisedMinimalResidual : public OperatorFunction<Field> { | ||||||
|  |  public: | ||||||
|  |   using OperatorFunction<Field>::operator(); | ||||||
|  |  | ||||||
|  |   bool ErrorOnNoConverge; // Throw an assert when GMRES fails to converge, | ||||||
|  |                           // defaults to true | ||||||
|  |  | ||||||
|  |   RealD   Tolerance; | ||||||
|  |  | ||||||
|  |   Integer MaxIterations; | ||||||
|  |   Integer RestartLength; | ||||||
|  |   Integer MaxNumberOfRestarts; | ||||||
|  |   Integer IterationCount; // Number of iterations the GMRES took to finish, | ||||||
|  |                           // filled in upon completion | ||||||
|  |  | ||||||
|  |   GridStopWatch MatrixTimer; | ||||||
|  |   GridStopWatch LinalgTimer; | ||||||
|  |   GridStopWatch QrTimer; | ||||||
|  |   GridStopWatch CompSolutionTimer; | ||||||
|  |  | ||||||
|  |   Eigen::MatrixXcd H; | ||||||
|  |  | ||||||
|  |   std::vector<ComplexD> y; | ||||||
|  |   std::vector<ComplexD> gamma; | ||||||
|  |   std::vector<ComplexD> c; | ||||||
|  |   std::vector<ComplexD> s; | ||||||
|  |  | ||||||
|  |   GeneralisedMinimalResidual(RealD   tol, | ||||||
|  |                              Integer maxit, | ||||||
|  |                              Integer restart_length, | ||||||
|  |                              bool    err_on_no_conv = true) | ||||||
|  |       : Tolerance(tol) | ||||||
|  |       , MaxIterations(maxit) | ||||||
|  |       , RestartLength(restart_length) | ||||||
|  |       , MaxNumberOfRestarts(MaxIterations/RestartLength + ((MaxIterations%RestartLength == 0) ? 0 : 1)) | ||||||
|  |       , ErrorOnNoConverge(err_on_no_conv) | ||||||
|  |       , H(Eigen::MatrixXcd::Zero(RestartLength, RestartLength + 1)) // sizes taken from DD-αAMG code base | ||||||
|  |       , y(RestartLength + 1, 0.) | ||||||
|  |       , gamma(RestartLength + 1, 0.) | ||||||
|  |       , c(RestartLength + 1, 0.) | ||||||
|  |       , s(RestartLength + 1, 0.) {}; | ||||||
|  |  | ||||||
|  |   void operator()(LinearOperatorBase<Field> &LinOp, const Field &src, Field &psi) { | ||||||
|  |  | ||||||
|  |     psi.Checkerboard() = src.Checkerboard(); | ||||||
|  |     conformable(psi, src); | ||||||
|  |  | ||||||
|  |     RealD guess = norm2(psi); | ||||||
|  |     assert(std::isnan(guess) == 0); | ||||||
|  |  | ||||||
|  |     RealD cp; | ||||||
|  |     RealD ssq = norm2(src); | ||||||
|  |     RealD rsq = Tolerance * Tolerance * ssq; | ||||||
|  |  | ||||||
|  |     Field r(src.Grid()); | ||||||
|  |  | ||||||
|  |     std::cout << std::setprecision(4) << std::scientific; | ||||||
|  |     std::cout << GridLogIterative << "GeneralisedMinimalResidual: guess " << guess << std::endl; | ||||||
|  |     std::cout << GridLogIterative << "GeneralisedMinimalResidual:   src " << ssq   << std::endl; | ||||||
|  |  | ||||||
|  |     MatrixTimer.Reset(); | ||||||
|  |     LinalgTimer.Reset(); | ||||||
|  |     QrTimer.Reset(); | ||||||
|  |     CompSolutionTimer.Reset(); | ||||||
|  |  | ||||||
|  |     GridStopWatch SolverTimer; | ||||||
|  |     SolverTimer.Start(); | ||||||
|  |  | ||||||
|  |     IterationCount = 0; | ||||||
|  |  | ||||||
|  |     for (int k=0; k<MaxNumberOfRestarts; k++) { | ||||||
|  |  | ||||||
|  |       cp = outerLoopBody(LinOp, src, psi, rsq); | ||||||
|  |  | ||||||
|  |       // Stopping condition | ||||||
|  |       if (cp <= rsq) { | ||||||
|  |  | ||||||
|  |         SolverTimer.Stop(); | ||||||
|  |  | ||||||
|  |         LinOp.Op(psi,r); | ||||||
|  |         axpy(r,-1.0,src,r); | ||||||
|  |  | ||||||
|  |         RealD srcnorm       = sqrt(ssq); | ||||||
|  |         RealD resnorm       = sqrt(norm2(r)); | ||||||
|  |         RealD true_residual = resnorm / srcnorm; | ||||||
|  |  | ||||||
|  |         std::cout << GridLogMessage        << "GeneralisedMinimalResidual: Converged on iteration " << IterationCount | ||||||
|  |                   << " computed residual " << sqrt(cp / ssq) | ||||||
|  |                   << " true residual "     << true_residual | ||||||
|  |                   << " target "            << Tolerance << std::endl; | ||||||
|  |  | ||||||
|  |         std::cout << GridLogMessage << "GMRES Time elapsed: Total   " <<       SolverTimer.Elapsed() << std::endl; | ||||||
|  |         std::cout << GridLogMessage << "GMRES Time elapsed: Matrix  " <<       MatrixTimer.Elapsed() << std::endl; | ||||||
|  |         std::cout << GridLogMessage << "GMRES Time elapsed: Linalg  " <<       LinalgTimer.Elapsed() << std::endl; | ||||||
|  |         std::cout << GridLogMessage << "GMRES Time elapsed: QR      " <<           QrTimer.Elapsed() << std::endl; | ||||||
|  |         std::cout << GridLogMessage << "GMRES Time elapsed: CompSol " << CompSolutionTimer.Elapsed() << std::endl; | ||||||
|  |         return; | ||||||
|  |       } | ||||||
|  |     } | ||||||
|  |  | ||||||
|  |     std::cout << GridLogMessage << "GeneralisedMinimalResidual did NOT converge" << std::endl; | ||||||
|  |  | ||||||
|  |     if (ErrorOnNoConverge) | ||||||
|  |       assert(0); | ||||||
|  |   } | ||||||
|  |  | ||||||
|  |   RealD outerLoopBody(LinearOperatorBase<Field> &LinOp, const Field &src, Field &psi, RealD rsq) { | ||||||
|  |  | ||||||
|  |     RealD cp = 0; | ||||||
|  |  | ||||||
|  |     Field w(src.Grid()); | ||||||
|  |     Field r(src.Grid()); | ||||||
|  |  | ||||||
|  |     // this should probably be made a class member so that it is only allocated once, not in every restart | ||||||
|  |     std::vector<Field> v(RestartLength + 1, src.Grid()); for (auto &elem : v) elem = Zero(); | ||||||
|  |  | ||||||
|  |     MatrixTimer.Start(); | ||||||
|  |     LinOp.Op(psi, w); | ||||||
|  |     MatrixTimer.Stop(); | ||||||
|  |  | ||||||
|  |     LinalgTimer.Start(); | ||||||
|  |     r = src - w; | ||||||
|  |  | ||||||
|  |     gamma[0] = sqrt(norm2(r)); | ||||||
|  |  | ||||||
|  |     v[0] = (1. / gamma[0]) * r; | ||||||
|  |     LinalgTimer.Stop(); | ||||||
|  |  | ||||||
|  |     for (int i=0; i<RestartLength; i++) { | ||||||
|  |  | ||||||
|  |       IterationCount++; | ||||||
|  |  | ||||||
|  |       arnoldiStep(LinOp, v, w, i); | ||||||
|  |  | ||||||
|  |       qrUpdate(i); | ||||||
|  |  | ||||||
|  |       cp = norm(gamma[i+1]); | ||||||
|  |  | ||||||
|  |       std::cout << GridLogIterative << "GeneralisedMinimalResidual: Iteration " << IterationCount | ||||||
|  |                 << " residual " << cp << " target " << rsq << std::endl; | ||||||
|  |  | ||||||
|  |       if ((i == RestartLength - 1) || (IterationCount == MaxIterations) || (cp <= rsq)) { | ||||||
|  |  | ||||||
|  |         computeSolution(v, psi, i); | ||||||
|  |  | ||||||
|  |         return cp; | ||||||
|  |       } | ||||||
|  |     } | ||||||
|  |  | ||||||
|  |     assert(0); // Never reached | ||||||
|  |     return cp; | ||||||
|  |   } | ||||||
|  |  | ||||||
|  |   void arnoldiStep(LinearOperatorBase<Field> &LinOp, std::vector<Field> &v, Field &w, int iter) { | ||||||
|  |  | ||||||
|  |     MatrixTimer.Start(); | ||||||
|  |     LinOp.Op(v[iter], w); | ||||||
|  |     MatrixTimer.Stop(); | ||||||
|  |  | ||||||
|  |     LinalgTimer.Start(); | ||||||
|  |     for (int i = 0; i <= iter; ++i) { | ||||||
|  |       H(iter, i) = innerProduct(v[i], w); | ||||||
|  |       w = w - ComplexD(H(iter, i)) * v[i]; | ||||||
|  |     } | ||||||
|  |  | ||||||
|  |     H(iter, iter + 1) = sqrt(norm2(w)); | ||||||
|  |     v[iter + 1] = ComplexD(1. / H(iter, iter + 1)) * w; | ||||||
|  |     LinalgTimer.Stop(); | ||||||
|  |   } | ||||||
|  |  | ||||||
|  |   void qrUpdate(int iter) { | ||||||
|  |  | ||||||
|  |     QrTimer.Start(); | ||||||
|  |     for (int i = 0; i < iter ; ++i) { | ||||||
|  |       auto tmp       = -s[i] * ComplexD(H(iter, i)) + c[i] * ComplexD(H(iter, i + 1)); | ||||||
|  |       H(iter, i)     = conjugate(c[i]) * ComplexD(H(iter, i)) + conjugate(s[i]) * ComplexD(H(iter, i + 1)); | ||||||
|  |       H(iter, i + 1) = tmp; | ||||||
|  |     } | ||||||
|  |  | ||||||
|  |     // Compute new Givens Rotation | ||||||
|  |     auto nu = sqrt(std::norm(H(iter, iter)) + std::norm(H(iter, iter + 1))); | ||||||
|  |     c[iter]     = H(iter, iter) / nu; | ||||||
|  |     s[iter]     = H(iter, iter + 1) / nu; | ||||||
|  |  | ||||||
|  |     // Apply new Givens rotation | ||||||
|  |     H(iter, iter)     = nu; | ||||||
|  |     H(iter, iter + 1) = 0.; | ||||||
|  |  | ||||||
|  |     gamma[iter + 1] = -s[iter] * gamma[iter]; | ||||||
|  |     gamma[iter]     = conjugate(c[iter]) * gamma[iter]; | ||||||
|  |     QrTimer.Stop(); | ||||||
|  |   } | ||||||
|  |  | ||||||
|  |   void computeSolution(std::vector<Field> const &v, Field &psi, int iter) { | ||||||
|  |  | ||||||
|  |     CompSolutionTimer.Start(); | ||||||
|  |     for (int i = iter; i >= 0; i--) { | ||||||
|  |       y[i] = gamma[i]; | ||||||
|  |       for (int k = i + 1; k <= iter; k++) | ||||||
|  |         y[i] = y[i] - ComplexD(H(k, i)) * y[k]; | ||||||
|  |       y[i] = y[i] / ComplexD(H(i, i)); | ||||||
|  |     } | ||||||
|  |  | ||||||
|  |     for (int i = 0; i <= iter; i++) | ||||||
|  |       psi = psi + v[i] * y[i]; | ||||||
|  |     CompSolutionTimer.Stop(); | ||||||
|  |   } | ||||||
|  | }; | ||||||
|  | } | ||||||
|  | #endif | ||||||
							
								
								
									
										736
									
								
								Grid/algorithms/iterative/ImplicitlyRestartedLanczos.h
									
									
									
									
									
										Normal file
									
								
							
							
						
						
									
										736
									
								
								Grid/algorithms/iterative/ImplicitlyRestartedLanczos.h
									
									
									
									
									
										Normal file
									
								
							| @@ -0,0 +1,736 @@ | |||||||
|  |     /************************************************************************************* | ||||||
|  |  | ||||||
|  |     Grid physics library, www.github.com/paboyle/Grid  | ||||||
|  |  | ||||||
|  |     Source file: ./lib/algorithms/iterative/ImplicitlyRestartedLanczos.h | ||||||
|  |  | ||||||
|  |     Copyright (C) 2015 | ||||||
|  |  | ||||||
|  | Author: Peter Boyle <paboyle@ph.ed.ac.uk> | ||||||
|  | Author: paboyle <paboyle@ph.ed.ac.uk> | ||||||
|  | Author: Chulwoo Jung <chulwoo@bnl.gov> | ||||||
|  | Author: Christoph Lehner <clehner@bnl.gov> | ||||||
|  |  | ||||||
|  |     This program is free software; you can redistribute it and/or modify | ||||||
|  |     it under the terms of the GNU General Public License as published by | ||||||
|  |     the Free Software Foundation; either version 2 of the License, or | ||||||
|  |     (at your option) any later version. | ||||||
|  |  | ||||||
|  |     This program is distributed in the hope that it will be useful, | ||||||
|  |     but WITHOUT ANY WARRANTY; without even the implied warranty of | ||||||
|  |     MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the | ||||||
|  |     GNU General Public License for more details. | ||||||
|  |  | ||||||
|  |     You should have received a copy of the GNU General Public License along | ||||||
|  |     with this program; if not, write to the Free Software Foundation, Inc., | ||||||
|  |     51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. | ||||||
|  |  | ||||||
|  |     See the full license in the file "LICENSE" in the top level distribution directory | ||||||
|  |     *************************************************************************************/ | ||||||
|  |     /*  END LEGAL */ | ||||||
|  | #ifndef GRID_BIRL_H | ||||||
|  | #define GRID_BIRL_H | ||||||
|  |  | ||||||
|  | #include <string.h> //memset | ||||||
|  | //#include <zlib.h> | ||||||
|  | #include <sys/stat.h> | ||||||
|  |  | ||||||
|  | NAMESPACE_BEGIN(Grid);  | ||||||
|  |  | ||||||
|  | ///////////////////////////////////////////////////////////// | ||||||
|  | // Implicitly restarted lanczos | ||||||
|  | ///////////////////////////////////////////////////////////// | ||||||
|  | template<class Field> class ImplicitlyRestartedLanczosTester  | ||||||
|  | { | ||||||
|  |  public: | ||||||
|  |   virtual int TestConvergence(int j,RealD resid,Field &evec, RealD &eval,RealD evalMaxApprox)=0; | ||||||
|  |   virtual int ReconstructEval(int j,RealD resid,Field &evec, RealD &eval,RealD evalMaxApprox)=0; | ||||||
|  | }; | ||||||
|  |  | ||||||
|  | enum IRLdiagonalisation {  | ||||||
|  |   IRLdiagonaliseWithDSTEGR, | ||||||
|  |   IRLdiagonaliseWithQR, | ||||||
|  |   IRLdiagonaliseWithEigen | ||||||
|  | }; | ||||||
|  |  | ||||||
|  | template<class Field> class ImplicitlyRestartedLanczosHermOpTester  : public ImplicitlyRestartedLanczosTester<Field> | ||||||
|  | { | ||||||
|  |  public: | ||||||
|  |  | ||||||
|  |   LinearFunction<Field>       &_HermOp; | ||||||
|  |   ImplicitlyRestartedLanczosHermOpTester(LinearFunction<Field> &HermOp) : _HermOp(HermOp)  {  }; | ||||||
|  |   int ReconstructEval(int j,RealD resid,Field &B, RealD &eval,RealD evalMaxApprox) | ||||||
|  |   { | ||||||
|  |     return TestConvergence(j,resid,B,eval,evalMaxApprox); | ||||||
|  |   } | ||||||
|  |   int TestConvergence(int j,RealD eresid,Field &B, RealD &eval,RealD evalMaxApprox) | ||||||
|  |   { | ||||||
|  |     Field v(B); | ||||||
|  |     RealD eval_poly = eval; | ||||||
|  |     // Apply operator | ||||||
|  |     _HermOp(B,v); | ||||||
|  |  | ||||||
|  |     RealD vnum = real(innerProduct(B,v)); // HermOp. | ||||||
|  |     RealD vden = norm2(B); | ||||||
|  |     RealD vv0  = norm2(v); | ||||||
|  |     eval   = vnum/vden; | ||||||
|  |     v -= eval*B; | ||||||
|  |  | ||||||
|  |     RealD vv = norm2(v) / ::pow(evalMaxApprox,2.0); | ||||||
|  |  | ||||||
|  |     std::cout.precision(13); | ||||||
|  |     std::cout<<GridLogIRL  << "[" << std::setw(3)<<j<<"] " | ||||||
|  | 	     <<"eval = "<<std::setw(25)<< eval << " (" << eval_poly << ")" | ||||||
|  | 	     <<" |H B[i] - eval[i]B[i]|^2 / evalMaxApprox^2 " << std::setw(25) << vv | ||||||
|  | 	     <<std::endl; | ||||||
|  |  | ||||||
|  |     int conv=0; | ||||||
|  |     if( (vv<eresid*eresid) ) conv = 1; | ||||||
|  |  | ||||||
|  |     return conv; | ||||||
|  |   } | ||||||
|  | }; | ||||||
|  |  | ||||||
|  | template<class Field>  | ||||||
|  | class ImplicitlyRestartedLanczos { | ||||||
|  |  private: | ||||||
|  |   const RealD small = 1.0e-8; | ||||||
|  |   int MaxIter; | ||||||
|  |   int MinRestart; // Minimum number of restarts; only check for convergence after | ||||||
|  |   int Nstop;   // Number of evecs checked for convergence | ||||||
|  |   int Nk;      // Number of converged sought | ||||||
|  |   //  int Np;      // Np -- Number of spare vecs in krylov space //  == Nm - Nk | ||||||
|  |   int Nm;      // Nm -- total number of vectors | ||||||
|  |   IRLdiagonalisation diagonalisation; | ||||||
|  |   int orth_period; | ||||||
|  |      | ||||||
|  |   RealD OrthoTime; | ||||||
|  |   RealD eresid, betastp; | ||||||
|  |   //////////////////////////////// | ||||||
|  |   // Embedded objects | ||||||
|  |   //////////////////////////////// | ||||||
|  |   LinearFunction<Field>       &_PolyOp; | ||||||
|  |   LinearFunction<Field>       &_HermOp; | ||||||
|  |   ImplicitlyRestartedLanczosTester<Field> &_Tester; | ||||||
|  |   // Default tester provided (we need a ref to something in default case) | ||||||
|  |   ImplicitlyRestartedLanczosHermOpTester<Field> SimpleTester; | ||||||
|  |   ///////////////////////// | ||||||
|  |   // Constructor | ||||||
|  |   ///////////////////////// | ||||||
|  |    | ||||||
|  | public:        | ||||||
|  |  | ||||||
|  |   ////////////////////////////////////////////////////////////////// | ||||||
|  |   // PAB: | ||||||
|  |   ////////////////////////////////////////////////////////////////// | ||||||
|  |   // Too many options  & knobs.  | ||||||
|  |   // Eliminate: | ||||||
|  |   //   orth_period | ||||||
|  |   //   betastp | ||||||
|  |   //   MinRestart | ||||||
|  |   // | ||||||
|  |   // Do we really need orth_period | ||||||
|  |   // What is the theoretical basis & guarantees of betastp ? | ||||||
|  |   // Nstop=Nk viable? | ||||||
|  |   // MinRestart avoidable with new convergence test? | ||||||
|  |   // Could cut to PolyOp, HermOp, Tester, Nk, Nm, resid, maxiter (+diagonalisation) | ||||||
|  |   // HermOp could be eliminated if we dropped the Power method for max eval. | ||||||
|  |   // -- also: The eval, eval2, eval2_copy stuff is still unnecessarily unclear | ||||||
|  |   ////////////////////////////////////////////////////////////////// | ||||||
|  |  ImplicitlyRestartedLanczos(LinearFunction<Field> & PolyOp, | ||||||
|  | 			    LinearFunction<Field> & HermOp, | ||||||
|  | 			    ImplicitlyRestartedLanczosTester<Field> & Tester, | ||||||
|  | 			    int _Nstop, // sought vecs | ||||||
|  | 			    int _Nk, // sought vecs | ||||||
|  | 			    int _Nm, // spare vecs | ||||||
|  | 			    RealD _eresid, // resid in lmdue deficit  | ||||||
|  | 			    int _MaxIter, // Max iterations | ||||||
|  | 			    RealD _betastp=0.0, // if beta(k) < betastp: converged | ||||||
|  | 			    int _MinRestart=0, int _orth_period = 1, | ||||||
|  | 			    IRLdiagonalisation _diagonalisation= IRLdiagonaliseWithEigen) : | ||||||
|  |     SimpleTester(HermOp), _PolyOp(PolyOp),      _HermOp(HermOp), _Tester(Tester), | ||||||
|  |     Nstop(_Nstop)  ,      Nk(_Nk),      Nm(_Nm), | ||||||
|  |     eresid(_eresid),      betastp(_betastp), | ||||||
|  |     MaxIter(_MaxIter)  ,      MinRestart(_MinRestart), | ||||||
|  |     orth_period(_orth_period), diagonalisation(_diagonalisation)  { }; | ||||||
|  |  | ||||||
|  |     ImplicitlyRestartedLanczos(LinearFunction<Field> & PolyOp, | ||||||
|  | 			       LinearFunction<Field> & HermOp, | ||||||
|  | 			       int _Nstop, // sought vecs | ||||||
|  | 			       int _Nk, // sought vecs | ||||||
|  | 			       int _Nm, // spare vecs | ||||||
|  | 			       RealD _eresid, // resid in lmdue deficit  | ||||||
|  | 			       int _MaxIter, // Max iterations | ||||||
|  | 			       RealD _betastp=0.0, // if beta(k) < betastp: converged | ||||||
|  | 			       int _MinRestart=0, int _orth_period = 1, | ||||||
|  | 			       IRLdiagonalisation _diagonalisation= IRLdiagonaliseWithEigen) : | ||||||
|  |     SimpleTester(HermOp),  _PolyOp(PolyOp),      _HermOp(HermOp), _Tester(SimpleTester), | ||||||
|  |     Nstop(_Nstop)  ,      Nk(_Nk),      Nm(_Nm), | ||||||
|  |     eresid(_eresid),      betastp(_betastp), | ||||||
|  |     MaxIter(_MaxIter)  ,      MinRestart(_MinRestart), | ||||||
|  |     orth_period(_orth_period), diagonalisation(_diagonalisation)  { }; | ||||||
|  |  | ||||||
|  |   //////////////////////////////// | ||||||
|  |   // Helpers | ||||||
|  |   //////////////////////////////// | ||||||
|  |   template<typename T>  static RealD normalise(T& v)  | ||||||
|  |   { | ||||||
|  |     RealD nn = norm2(v); | ||||||
|  |     nn = std::sqrt(nn); | ||||||
|  |     v = v * (1.0/nn); | ||||||
|  |     return nn; | ||||||
|  |   } | ||||||
|  |  | ||||||
|  |   void orthogonalize(Field& w, std::vector<Field>& evec,int k) | ||||||
|  |   { | ||||||
|  |     OrthoTime-=usecond()/1e6; | ||||||
|  |     basisOrthogonalize(evec,w,k); | ||||||
|  |     normalise(w); | ||||||
|  |     OrthoTime+=usecond()/1e6; | ||||||
|  |   } | ||||||
|  |  | ||||||
|  | /* Rudy Arthur's thesis pp.137 | ||||||
|  | ------------------------ | ||||||
|  | Require: M > K P = M − K † | ||||||
|  | Compute the factorization AVM = VM HM + fM eM  | ||||||
|  | repeat | ||||||
|  |   Q=I | ||||||
|  |   for i = 1,...,P do | ||||||
|  |     QiRi =HM −θiI Q = QQi | ||||||
|  |     H M = Q †i H M Q i | ||||||
|  |   end for | ||||||
|  |   βK =HM(K+1,K) σK =Q(M,K) | ||||||
|  |   r=vK+1βK +rσK | ||||||
|  |   VK =VM(1:M)Q(1:M,1:K) | ||||||
|  |   HK =HM(1:K,1:K) | ||||||
|  |   →AVK =VKHK +fKe†K † Extend to an M = K + P step factorization AVM = VMHM + fMeM | ||||||
|  | until convergence | ||||||
|  | */ | ||||||
|  |   void calc(std::vector<RealD>& eval, std::vector<Field>& evec,  const Field& src, int& Nconv, bool reverse=false) | ||||||
|  |   { | ||||||
|  |     GridBase *grid = src.Grid(); | ||||||
|  |     assert(grid == evec[0].Grid()); | ||||||
|  |      | ||||||
|  |     //    GridLogIRL.TimingMode(1); | ||||||
|  |     std::cout << GridLogIRL <<"**************************************************************************"<< std::endl; | ||||||
|  |     std::cout << GridLogIRL <<" ImplicitlyRestartedLanczos::calc() starting iteration 0 /  "<< MaxIter<< std::endl; | ||||||
|  |     std::cout << GridLogIRL <<"**************************************************************************"<< std::endl; | ||||||
|  |     std::cout << GridLogIRL <<" -- seek   Nk    = " << Nk    <<" vectors"<< std::endl; | ||||||
|  |     std::cout << GridLogIRL <<" -- accept Nstop = " << Nstop <<" vectors"<< std::endl; | ||||||
|  |     std::cout << GridLogIRL <<" -- total  Nm    = " << Nm    <<" vectors"<< std::endl; | ||||||
|  |     std::cout << GridLogIRL <<" -- size of eval = " << eval.size() << std::endl; | ||||||
|  |     std::cout << GridLogIRL <<" -- size of evec = " << evec.size() << std::endl; | ||||||
|  |     if ( diagonalisation == IRLdiagonaliseWithDSTEGR ) { | ||||||
|  |       std::cout << GridLogIRL << "Diagonalisation is DSTEGR "<<std::endl; | ||||||
|  |     } else if ( diagonalisation == IRLdiagonaliseWithQR ) {  | ||||||
|  |       std::cout << GridLogIRL << "Diagonalisation is QR "<<std::endl; | ||||||
|  |     }  else if ( diagonalisation == IRLdiagonaliseWithEigen ) {  | ||||||
|  |       std::cout << GridLogIRL << "Diagonalisation is Eigen "<<std::endl; | ||||||
|  |     } | ||||||
|  |     std::cout << GridLogIRL <<"**************************************************************************"<< std::endl; | ||||||
|  | 	 | ||||||
|  |     assert(Nm <= evec.size() && Nm <= eval.size()); | ||||||
|  |      | ||||||
|  |     // quickly get an idea of the largest eigenvalue to more properly normalize the residuum | ||||||
|  |     RealD evalMaxApprox = 0.0; | ||||||
|  |     { | ||||||
|  |       auto src_n = src; | ||||||
|  |       auto tmp = src; | ||||||
|  |       std::cout << GridLogIRL << " IRL source norm " << norm2(src) << std::endl; | ||||||
|  |       const int _MAX_ITER_IRL_MEVAPP_ = 50; | ||||||
|  |       for (int i=0;i<_MAX_ITER_IRL_MEVAPP_;i++) { | ||||||
|  | 	normalise(src_n); | ||||||
|  | 	_HermOp(src_n,tmp); | ||||||
|  | 	//	std::cout << GridLogMessage<< tmp<<std::endl; exit(0); | ||||||
|  | 	//	std::cout << GridLogIRL << " _HermOp " << norm2(tmp) << std::endl; | ||||||
|  | 	RealD vnum = real(innerProduct(src_n,tmp)); // HermOp. | ||||||
|  | 	RealD vden = norm2(src_n); | ||||||
|  | 	RealD na = vnum/vden; | ||||||
|  | 	if (fabs(evalMaxApprox/na - 1.0) < 0.0001) | ||||||
|  | 	  i=_MAX_ITER_IRL_MEVAPP_; | ||||||
|  | 	evalMaxApprox = na; | ||||||
|  | 	std::cout << GridLogIRL << " Approximation of largest eigenvalue: " << evalMaxApprox << std::endl; | ||||||
|  | 	src_n = tmp; | ||||||
|  |       } | ||||||
|  |     } | ||||||
|  | 	 | ||||||
|  |     std::vector<RealD> lme(Nm);   | ||||||
|  |     std::vector<RealD> lme2(Nm); | ||||||
|  |     std::vector<RealD> eval2(Nm); | ||||||
|  |     std::vector<RealD> eval2_copy(Nm); | ||||||
|  |     Eigen::MatrixXd Qt = Eigen::MatrixXd::Zero(Nm,Nm); | ||||||
|  |  | ||||||
|  |     Field f(grid); | ||||||
|  |     Field v(grid); | ||||||
|  |     int k1 = 1; | ||||||
|  |     int k2 = Nk; | ||||||
|  |     RealD beta_k; | ||||||
|  |  | ||||||
|  |     Nconv = 0; | ||||||
|  |    | ||||||
|  |     // Set initial vector | ||||||
|  |     evec[0] = src; | ||||||
|  |     normalise(evec[0]); | ||||||
|  | 	 | ||||||
|  |     // Initial Nk steps | ||||||
|  |     OrthoTime=0.; | ||||||
|  |     for(int k=0; k<Nk; ++k) step(eval,lme,evec,f,Nm,k); | ||||||
|  |     std::cout<<GridLogIRL <<"Initial "<< Nk <<"steps done "<<std::endl; | ||||||
|  |     std::cout<<GridLogIRL <<"Initial steps:OrthoTime "<<OrthoTime<< "seconds"<<std::endl; | ||||||
|  |  | ||||||
|  |     ////////////////////////////////// | ||||||
|  |     // Restarting loop begins | ||||||
|  |     ////////////////////////////////// | ||||||
|  |     int iter; | ||||||
|  |     for(iter = 0; iter<MaxIter; ++iter){ | ||||||
|  |        | ||||||
|  |       OrthoTime=0.; | ||||||
|  |  | ||||||
|  |       std::cout<< GridLogMessage <<" **********************"<< std::endl; | ||||||
|  |       std::cout<< GridLogMessage <<" Restart iteration = "<< iter << std::endl; | ||||||
|  |       std::cout<< GridLogMessage <<" **********************"<< std::endl; | ||||||
|  |  | ||||||
|  |       std::cout<<GridLogIRL <<" running "<<Nm-Nk <<" steps: "<<std::endl; | ||||||
|  |       for(int k=Nk; k<Nm; ++k) step(eval,lme,evec,f,Nm,k); | ||||||
|  |       f *= lme[Nm-1]; | ||||||
|  |  | ||||||
|  |       std::cout<<GridLogIRL <<" "<<Nm-Nk <<" steps done "<<std::endl; | ||||||
|  |       std::cout<<GridLogIRL <<"Initial steps:OrthoTime "<<OrthoTime<< "seconds"<<std::endl; | ||||||
|  | 	   | ||||||
|  |       ////////////////////////////////// | ||||||
|  |       // getting eigenvalues | ||||||
|  |       ////////////////////////////////// | ||||||
|  |       for(int k=0; k<Nm; ++k){ | ||||||
|  | 	eval2[k] = eval[k+k1-1]; | ||||||
|  | 	lme2[k] = lme[k+k1-1]; | ||||||
|  |       } | ||||||
|  |       Qt = Eigen::MatrixXd::Identity(Nm,Nm); | ||||||
|  |       diagonalize(eval2,lme2,Nm,Nm,Qt,grid); | ||||||
|  |       std::cout<<GridLogIRL <<" diagonalized "<<std::endl; | ||||||
|  |  | ||||||
|  |       ////////////////////////////////// | ||||||
|  |       // sorting | ||||||
|  |       ////////////////////////////////// | ||||||
|  |       eval2_copy = eval2; | ||||||
|  |       std::partial_sort(eval2.begin(),eval2.begin()+Nm,eval2.end(),std::greater<RealD>()); | ||||||
|  |       std::cout<<GridLogIRL <<" evals sorted "<<std::endl; | ||||||
|  |       const int chunk=8; | ||||||
|  |       for(int io=0; io<k2;io+=chunk){ | ||||||
|  | 	std::cout<<GridLogIRL << "eval "<< std::setw(3) << io ; | ||||||
|  | 	for(int ii=0;ii<chunk;ii++){ | ||||||
|  | 	  if ( (io+ii)<k2 ) | ||||||
|  | 	    std::cout<< " "<< std::setw(12)<< eval2[io+ii]; | ||||||
|  | 	} | ||||||
|  | 	std::cout << std::endl; | ||||||
|  |       } | ||||||
|  |  | ||||||
|  |       ////////////////////////////////// | ||||||
|  |       // Implicitly shifted QR transformations | ||||||
|  |       ////////////////////////////////// | ||||||
|  |       Qt = Eigen::MatrixXd::Identity(Nm,Nm); | ||||||
|  |       for(int ip=k2; ip<Nm; ++ip){  | ||||||
|  | 	QR_decomp(eval,lme,Nm,Nm,Qt,eval2[ip],k1,Nm); | ||||||
|  |       } | ||||||
|  |       std::cout<<GridLogIRL <<"QR decomposed "<<std::endl; | ||||||
|  |  | ||||||
|  |       assert(k2<Nm);      assert(k2<Nm);      assert(k1>0); | ||||||
|  |  | ||||||
|  |       basisRotate(evec,Qt,k1-1,k2+1,0,Nm,Nm); /// big constraint on the basis | ||||||
|  |       std::cout<<GridLogIRL <<"basisRotated  by Qt *"<<k1-1<<","<<k2+1<<")"<<std::endl; | ||||||
|  |        | ||||||
|  |       //////////////////////////////////////////////////// | ||||||
|  |       // Compressed vector f and beta(k2) | ||||||
|  |       //////////////////////////////////////////////////// | ||||||
|  |       f *= Qt(k2-1,Nm-1); | ||||||
|  |       f += lme[k2-1] * evec[k2]; | ||||||
|  |       beta_k = norm2(f); | ||||||
|  |       beta_k = std::sqrt(beta_k); | ||||||
|  |       std::cout<<GridLogIRL<<" beta(k) = "<<beta_k<<std::endl; | ||||||
|  | 	   | ||||||
|  |       RealD betar = 1.0/beta_k; | ||||||
|  |       evec[k2] = betar * f; | ||||||
|  |       lme[k2-1] = beta_k; | ||||||
|  | 	   | ||||||
|  |       //////////////////////////////////////////////////// | ||||||
|  |       // Convergence test | ||||||
|  |       //////////////////////////////////////////////////// | ||||||
|  |       for(int k=0; k<Nm; ++k){     | ||||||
|  | 	eval2[k] = eval[k]; | ||||||
|  | 	lme2[k] = lme[k]; | ||||||
|  |       } | ||||||
|  |       Qt = Eigen::MatrixXd::Identity(Nm,Nm); | ||||||
|  |       diagonalize(eval2,lme2,Nk,Nm,Qt,grid); | ||||||
|  |       std::cout<<GridLogIRL <<" Diagonalized "<<std::endl; | ||||||
|  | 	   | ||||||
|  |       Nconv = 0; | ||||||
|  |       if (iter >= MinRestart) { | ||||||
|  |  | ||||||
|  | 	std::cout << GridLogIRL << "Test convergence: rotate subset of vectors to test convergence " << std::endl; | ||||||
|  |  | ||||||
|  | 	Field B(grid); B.Checkerboard() = evec[0].Checkerboard(); | ||||||
|  |  | ||||||
|  | 	//  power of two search pattern;  not every evalue in eval2 is assessed. | ||||||
|  | 	int allconv =1; | ||||||
|  | 	for(int jj = 1; jj<=Nstop; jj*=2){ | ||||||
|  | 	  int j = Nstop-jj; | ||||||
|  | 	  RealD e = eval2_copy[j]; // Discard the evalue | ||||||
|  | 	  basisRotateJ(B,evec,Qt,j,0,Nk,Nm);	     | ||||||
|  | 	  if( !_Tester.TestConvergence(j,eresid,B,e,evalMaxApprox) ) { | ||||||
|  | 	    allconv=0; | ||||||
|  | 	  } | ||||||
|  | 	} | ||||||
|  | 	// Do evec[0] for good measure | ||||||
|  | 	{  | ||||||
|  | 	  int j=0; | ||||||
|  | 	  RealD e = eval2_copy[0];  | ||||||
|  | 	  basisRotateJ(B,evec,Qt,j,0,Nk,Nm);	     | ||||||
|  | 	  if( !_Tester.TestConvergence(j,eresid,B,e,evalMaxApprox) ) allconv=0; | ||||||
|  | 	} | ||||||
|  | 	if ( allconv ) Nconv = Nstop; | ||||||
|  |  | ||||||
|  | 	// test if we converged, if so, terminate | ||||||
|  | 	std::cout<<GridLogIRL<<" #modes converged: >= "<<Nconv<<"/"<<Nstop<<std::endl; | ||||||
|  | 	//	if( Nconv>=Nstop || beta_k < betastp){ | ||||||
|  | 	if( Nconv>=Nstop){ | ||||||
|  | 	  goto converged; | ||||||
|  | 	} | ||||||
|  | 	   | ||||||
|  |       } else { | ||||||
|  | 	std::cout << GridLogIRL << "iter < MinRestart: do not yet test for convergence\n"; | ||||||
|  |       } // end of iter loop | ||||||
|  |     } | ||||||
|  |  | ||||||
|  |     std::cout<<GridLogError<<"\n NOT converged.\n"; | ||||||
|  |     abort(); | ||||||
|  | 	 | ||||||
|  |   converged: | ||||||
|  |     { | ||||||
|  |       Field B(grid); B.Checkerboard() = evec[0].Checkerboard(); | ||||||
|  |       basisRotate(evec,Qt,0,Nk,0,Nk,Nm);	     | ||||||
|  |       std::cout << GridLogIRL << " Rotated basis"<<std::endl; | ||||||
|  |       Nconv=0; | ||||||
|  |       ////////////////////////////////////////////////////////////////////// | ||||||
|  |       // Full final convergence test; unconditionally applied | ||||||
|  |       ////////////////////////////////////////////////////////////////////// | ||||||
|  |       for(int j = 0; j<=Nk; j++){ | ||||||
|  | 	B=evec[j]; | ||||||
|  | 	if( _Tester.ReconstructEval(j,eresid,B,eval2[j],evalMaxApprox) ) { | ||||||
|  | 	  Nconv++; | ||||||
|  | 	} | ||||||
|  |       } | ||||||
|  |  | ||||||
|  |       if ( Nconv < Nstop ) | ||||||
|  | 	std::cout << GridLogIRL << "Nconv ("<<Nconv<<") < Nstop ("<<Nstop<<")"<<std::endl; | ||||||
|  |  | ||||||
|  |       eval=eval2; | ||||||
|  |        | ||||||
|  |       //Keep only converged | ||||||
|  |       eval.resize(Nconv);// Nstop? | ||||||
|  |       evec.resize(Nconv,grid);// Nstop? | ||||||
|  |       basisSortInPlace(evec,eval,reverse); | ||||||
|  |        | ||||||
|  |     } | ||||||
|  |         | ||||||
|  |     std::cout << GridLogIRL <<"**************************************************************************"<< std::endl; | ||||||
|  |     std::cout << GridLogIRL << "ImplicitlyRestartedLanczos CONVERGED ; Summary :\n"; | ||||||
|  |     std::cout << GridLogIRL <<"**************************************************************************"<< std::endl; | ||||||
|  |     std::cout << GridLogIRL << " -- Iterations  = "<< iter   << "\n"; | ||||||
|  |     std::cout << GridLogIRL << " -- beta(k)     = "<< beta_k << "\n"; | ||||||
|  |     std::cout << GridLogIRL << " -- Nconv       = "<< Nconv  << "\n"; | ||||||
|  |     std::cout << GridLogIRL <<"**************************************************************************"<< std::endl; | ||||||
|  |   } | ||||||
|  |  | ||||||
|  |  private: | ||||||
|  | /* Saad PP. 195 | ||||||
|  | 1. Choose an initial vector v1 of 2-norm unity. Set β1 ≡ 0, v0 ≡ 0 | ||||||
|  | 2. For k = 1,2,...,m Do: | ||||||
|  | 3. wk:=Avk - b_k v_{k-1}       | ||||||
|  | 4. ak:=(wk,vk)       //  | ||||||
|  | 5. wk:=wk-akvk       // wk orthog vk  | ||||||
|  | 6. bk+1 := ||wk||_2. If b_k+1 = 0 then Stop | ||||||
|  | 7. vk+1 := wk/b_k+1 | ||||||
|  | 8. EndDo | ||||||
|  |  */ | ||||||
|  |   void step(std::vector<RealD>& lmd, | ||||||
|  | 	    std::vector<RealD>& lme,  | ||||||
|  | 	    std::vector<Field>& evec, | ||||||
|  | 	    Field& w,int Nm,int k) | ||||||
|  |   { | ||||||
|  |     std::cout<<GridLogIRL << "Lanczos step " <<k<<std::endl; | ||||||
|  |     const RealD tiny = 1.0e-20; | ||||||
|  |     assert( k< Nm ); | ||||||
|  |  | ||||||
|  |     GridStopWatch gsw_op,gsw_o; | ||||||
|  |  | ||||||
|  |     Field& evec_k = evec[k]; | ||||||
|  |  | ||||||
|  |     _PolyOp(evec_k,w);    std::cout<<GridLogIRL << "PolyOp" <<std::endl; | ||||||
|  |  | ||||||
|  |     if(k>0) w -= lme[k-1] * evec[k-1]; | ||||||
|  |  | ||||||
|  |     ComplexD zalph = innerProduct(evec_k,w); | ||||||
|  |     RealD     alph = real(zalph); | ||||||
|  |  | ||||||
|  |     w = w - alph * evec_k; | ||||||
|  |  | ||||||
|  |     RealD beta = normalise(w);  | ||||||
|  |  | ||||||
|  |     lmd[k] = alph; | ||||||
|  |     lme[k] = beta; | ||||||
|  |  | ||||||
|  |     if ( (k>0) && ( (k % orth_period) == 0 )) { | ||||||
|  |       std::cout<<GridLogIRL << "Orthogonalising " <<k<<std::endl; | ||||||
|  |       orthogonalize(w,evec,k); // orthonormalise | ||||||
|  |       std::cout<<GridLogIRL << "Orthogonalised " <<k<<std::endl; | ||||||
|  |     } | ||||||
|  |  | ||||||
|  |     if(k < Nm-1) evec[k+1] = w; | ||||||
|  |  | ||||||
|  |     std::cout<<GridLogIRL << "alpha[" << k << "] = " << zalph << " beta[" << k << "] = "<<beta<<std::endl; | ||||||
|  |     if ( beta < tiny )  | ||||||
|  |       std::cout<<GridLogIRL << " beta is tiny "<<beta<<std::endl; | ||||||
|  |  | ||||||
|  |     std::cout<<GridLogIRL << "Lanczos step complete " <<k<<std::endl; | ||||||
|  |   } | ||||||
|  |  | ||||||
|  |   void diagonalize_Eigen(std::vector<RealD>& lmd, std::vector<RealD>& lme,  | ||||||
|  | 			 int Nk, int Nm,   | ||||||
|  | 			 Eigen::MatrixXd & Qt, // Nm x Nm | ||||||
|  | 			 GridBase *grid) | ||||||
|  |   { | ||||||
|  |     Eigen::MatrixXd TriDiag = Eigen::MatrixXd::Zero(Nk,Nk); | ||||||
|  |  | ||||||
|  |     for(int i=0;i<Nk;i++)   TriDiag(i,i)   = lmd[i]; | ||||||
|  |     for(int i=0;i<Nk-1;i++) TriDiag(i,i+1) = lme[i]; | ||||||
|  |     for(int i=0;i<Nk-1;i++) TriDiag(i+1,i) = lme[i]; | ||||||
|  |      | ||||||
|  |     Eigen::SelfAdjointEigenSolver<Eigen::MatrixXd> eigensolver(TriDiag); | ||||||
|  |  | ||||||
|  |     for (int i = 0; i < Nk; i++) { | ||||||
|  |       lmd[Nk-1-i] = eigensolver.eigenvalues()(i); | ||||||
|  |     } | ||||||
|  |     for (int i = 0; i < Nk; i++) { | ||||||
|  |       for (int j = 0; j < Nk; j++) { | ||||||
|  | 	Qt(Nk-1-i,j) = eigensolver.eigenvectors()(j,i); | ||||||
|  |       } | ||||||
|  |     } | ||||||
|  |   } | ||||||
|  |  | ||||||
|  |   /////////////////////////////////////////////////////////////////////////// | ||||||
|  |   // File could end here if settle on Eigen ??? !!! | ||||||
|  |   /////////////////////////////////////////////////////////////////////////// | ||||||
|  |   void QR_decomp(std::vector<RealD>& lmd,   // Nm  | ||||||
|  | 		 std::vector<RealD>& lme,   // Nm  | ||||||
|  | 		 int Nk, int Nm,            // Nk, Nm | ||||||
|  | 		 Eigen::MatrixXd& Qt,       // Nm x Nm matrix | ||||||
|  | 		 RealD Dsh, int kmin, int kmax) | ||||||
|  |   { | ||||||
|  |     int k = kmin-1; | ||||||
|  |     RealD x; | ||||||
|  |      | ||||||
|  |     RealD Fden = 1.0/hypot(lmd[k]-Dsh,lme[k]); | ||||||
|  |     RealD c = ( lmd[k] -Dsh) *Fden; | ||||||
|  |     RealD s = -lme[k] *Fden; | ||||||
|  |        | ||||||
|  |     RealD tmpa1 = lmd[k]; | ||||||
|  |     RealD tmpa2 = lmd[k+1]; | ||||||
|  |     RealD tmpb  = lme[k]; | ||||||
|  |  | ||||||
|  |     lmd[k]   = c*c*tmpa1 +s*s*tmpa2 -2.0*c*s*tmpb; | ||||||
|  |     lmd[k+1] = s*s*tmpa1 +c*c*tmpa2 +2.0*c*s*tmpb; | ||||||
|  |     lme[k]   = c*s*(tmpa1-tmpa2) +(c*c-s*s)*tmpb; | ||||||
|  |     x        =-s*lme[k+1]; | ||||||
|  |     lme[k+1] = c*lme[k+1]; | ||||||
|  |        | ||||||
|  |     for(int i=0; i<Nk; ++i){ | ||||||
|  |       RealD Qtmp1 = Qt(k,i); | ||||||
|  |       RealD Qtmp2 = Qt(k+1,i); | ||||||
|  |       Qt(k,i)  = c*Qtmp1 - s*Qtmp2; | ||||||
|  |       Qt(k+1,i)= s*Qtmp1 + c*Qtmp2;  | ||||||
|  |     } | ||||||
|  |  | ||||||
|  |     // Givens transformations | ||||||
|  |     for(int k = kmin; k < kmax-1; ++k){ | ||||||
|  |        | ||||||
|  |       RealD Fden = 1.0/hypot(x,lme[k-1]); | ||||||
|  |       RealD c = lme[k-1]*Fden; | ||||||
|  |       RealD s = - x*Fden; | ||||||
|  | 	 | ||||||
|  |       RealD tmpa1 = lmd[k]; | ||||||
|  |       RealD tmpa2 = lmd[k+1]; | ||||||
|  |       RealD tmpb  = lme[k]; | ||||||
|  |  | ||||||
|  |       lmd[k]   = c*c*tmpa1 +s*s*tmpa2 -2.0*c*s*tmpb; | ||||||
|  |       lmd[k+1] = s*s*tmpa1 +c*c*tmpa2 +2.0*c*s*tmpb; | ||||||
|  |       lme[k]   = c*s*(tmpa1-tmpa2) +(c*c-s*s)*tmpb; | ||||||
|  |       lme[k-1] = c*lme[k-1] -s*x; | ||||||
|  |  | ||||||
|  |       if(k != kmax-2){ | ||||||
|  | 	x = -s*lme[k+1]; | ||||||
|  | 	lme[k+1] = c*lme[k+1]; | ||||||
|  |       } | ||||||
|  |  | ||||||
|  |       for(int i=0; i<Nk; ++i){ | ||||||
|  | 	RealD Qtmp1 = Qt(k,i); | ||||||
|  | 	RealD Qtmp2 = Qt(k+1,i); | ||||||
|  | 	Qt(k,i)     = c*Qtmp1 -s*Qtmp2; | ||||||
|  | 	Qt(k+1,i)   = s*Qtmp1 +c*Qtmp2; | ||||||
|  |       } | ||||||
|  |     } | ||||||
|  |   } | ||||||
|  |  | ||||||
|  |   void diagonalize(std::vector<RealD>& lmd, std::vector<RealD>& lme,  | ||||||
|  | 		   int Nk, int Nm,    | ||||||
|  | 		   Eigen::MatrixXd & Qt, | ||||||
|  | 		   GridBase *grid) | ||||||
|  |   { | ||||||
|  |     Qt = Eigen::MatrixXd::Identity(Nm,Nm); | ||||||
|  |     if ( diagonalisation == IRLdiagonaliseWithDSTEGR ) { | ||||||
|  |       diagonalize_lapack(lmd,lme,Nk,Nm,Qt,grid); | ||||||
|  |     } else if ( diagonalisation == IRLdiagonaliseWithQR ) {  | ||||||
|  |       diagonalize_QR(lmd,lme,Nk,Nm,Qt,grid); | ||||||
|  |     }  else if ( diagonalisation == IRLdiagonaliseWithEigen ) {  | ||||||
|  |       diagonalize_Eigen(lmd,lme,Nk,Nm,Qt,grid); | ||||||
|  |     } else {  | ||||||
|  |       assert(0); | ||||||
|  |     } | ||||||
|  |   } | ||||||
|  |  | ||||||
|  | #ifdef USE_LAPACK | ||||||
|  | void LAPACK_dstegr(char *jobz, char *range, int *n, double *d, double *e, | ||||||
|  |                    double *vl, double *vu, int *il, int *iu, double *abstol, | ||||||
|  |                    int *m, double *w, double *z, int *ldz, int *isuppz, | ||||||
|  |                    double *work, int *lwork, int *iwork, int *liwork, | ||||||
|  |                    int *info); | ||||||
|  | #endif | ||||||
|  |  | ||||||
|  | void diagonalize_lapack(std::vector<RealD>& lmd, | ||||||
|  | 			std::vector<RealD>& lme,  | ||||||
|  | 			int Nk, int Nm,   | ||||||
|  | 			Eigen::MatrixXd& Qt, | ||||||
|  | 			GridBase *grid) | ||||||
|  | { | ||||||
|  | #ifdef USE_LAPACK | ||||||
|  |   const int size = Nm; | ||||||
|  |   int NN = Nk; | ||||||
|  |   double evals_tmp[NN]; | ||||||
|  |   double evec_tmp[NN][NN]; | ||||||
|  |   memset(evec_tmp[0],0,sizeof(double)*NN*NN); | ||||||
|  |   double DD[NN]; | ||||||
|  |   double EE[NN]; | ||||||
|  |   for (int i = 0; i< NN; i++) { | ||||||
|  |     for (int j = i - 1; j <= i + 1; j++) { | ||||||
|  |       if ( j < NN && j >= 0 ) { | ||||||
|  | 	if (i==j) DD[i] = lmd[i]; | ||||||
|  | 	if (i==j) evals_tmp[i] = lmd[i]; | ||||||
|  | 	if (j==(i-1)) EE[j] = lme[j]; | ||||||
|  |       } | ||||||
|  |     } | ||||||
|  |   } | ||||||
|  |   int evals_found; | ||||||
|  |   int lwork = ( (18*NN) > (1+4*NN+NN*NN)? (18*NN):(1+4*NN+NN*NN)) ; | ||||||
|  |   int liwork =  3+NN*10 ; | ||||||
|  |   int iwork[liwork]; | ||||||
|  |   double work[lwork]; | ||||||
|  |   int isuppz[2*NN]; | ||||||
|  |   char jobz = 'V'; // calculate evals & evecs | ||||||
|  |   char range = 'I'; // calculate all evals | ||||||
|  |   //    char range = 'A'; // calculate all evals | ||||||
|  |   char uplo = 'U'; // refer to upper half of original matrix | ||||||
|  |   char compz = 'I'; // Compute eigenvectors of tridiagonal matrix | ||||||
|  |   int ifail[NN]; | ||||||
|  |   int info; | ||||||
|  |   int total = grid->_Nprocessors; | ||||||
|  |   int node  = grid->_processor; | ||||||
|  |   int interval = (NN/total)+1; | ||||||
|  |   double vl = 0.0, vu = 0.0; | ||||||
|  |   int il = interval*node+1 , iu = interval*(node+1); | ||||||
|  |   if (iu > NN)  iu=NN; | ||||||
|  |   double tol = 0.0; | ||||||
|  |   if (1) { | ||||||
|  |     memset(evals_tmp,0,sizeof(double)*NN); | ||||||
|  |     if ( il <= NN){ | ||||||
|  |       LAPACK_dstegr(&jobz, &range, &NN, | ||||||
|  | 		    (double*)DD, (double*)EE, | ||||||
|  | 		    &vl, &vu, &il, &iu, // these four are ignored if second parameteris 'A' | ||||||
|  | 		    &tol, // tolerance | ||||||
|  | 		    &evals_found, evals_tmp, (double*)evec_tmp, &NN, | ||||||
|  | 		    isuppz, | ||||||
|  | 		    work, &lwork, iwork, &liwork, | ||||||
|  | 		    &info); | ||||||
|  |       for (int i = iu-1; i>= il-1; i--){ | ||||||
|  | 	evals_tmp[i] = evals_tmp[i - (il-1)]; | ||||||
|  | 	if (il>1) evals_tmp[i-(il-1)]=0.; | ||||||
|  | 	for (int j = 0; j< NN; j++){ | ||||||
|  | 	  evec_tmp[i][j] = evec_tmp[i - (il-1)][j]; | ||||||
|  | 	  if (il>1) evec_tmp[i-(il-1)][j]=0.; | ||||||
|  | 	} | ||||||
|  |       } | ||||||
|  |     } | ||||||
|  |     { | ||||||
|  |       grid->GlobalSumVector(evals_tmp,NN); | ||||||
|  |       grid->GlobalSumVector((double*)evec_tmp,NN*NN); | ||||||
|  |     } | ||||||
|  |   }  | ||||||
|  |   // Safer to sort instead of just reversing it,  | ||||||
|  |   // but the document of the routine says evals are sorted in increasing order.  | ||||||
|  |   // qr gives evals in decreasing order. | ||||||
|  |   for(int i=0;i<NN;i++){ | ||||||
|  |     lmd [NN-1-i]=evals_tmp[i]; | ||||||
|  |     for(int j=0;j<NN;j++){ | ||||||
|  |       Qt((NN-1-i),j)=evec_tmp[i][j]; | ||||||
|  |     } | ||||||
|  |   } | ||||||
|  | #else  | ||||||
|  |   assert(0); | ||||||
|  | #endif | ||||||
|  | } | ||||||
|  |  | ||||||
|  | void diagonalize_QR(std::vector<RealD>& lmd, std::vector<RealD>& lme,  | ||||||
|  | 		    int Nk, int Nm,    | ||||||
|  | 		    Eigen::MatrixXd & Qt, | ||||||
|  | 		    GridBase *grid) | ||||||
|  | { | ||||||
|  |   int QRiter = 100*Nm; | ||||||
|  |   int kmin = 1; | ||||||
|  |   int kmax = Nk; | ||||||
|  |    | ||||||
|  |   // (this should be more sophisticated) | ||||||
|  |   for(int iter=0; iter<QRiter; ++iter){ | ||||||
|  |      | ||||||
|  |     // determination of 2x2 leading submatrix | ||||||
|  |     RealD dsub = lmd[kmax-1]-lmd[kmax-2]; | ||||||
|  |     RealD dd = std::sqrt(dsub*dsub + 4.0*lme[kmax-2]*lme[kmax-2]); | ||||||
|  |     RealD Dsh = 0.5*(lmd[kmax-2]+lmd[kmax-1] +dd*(dsub/fabs(dsub))); | ||||||
|  |     // (Dsh: shift) | ||||||
|  |      | ||||||
|  |     // transformation | ||||||
|  |     QR_decomp(lmd,lme,Nk,Nm,Qt,Dsh,kmin,kmax); // Nk, Nm | ||||||
|  |      | ||||||
|  |     // Convergence criterion (redef of kmin and kamx) | ||||||
|  |     for(int j=kmax-1; j>= kmin; --j){ | ||||||
|  |       RealD dds = fabs(lmd[j-1])+fabs(lmd[j]); | ||||||
|  |       if(fabs(lme[j-1])+dds > dds){ | ||||||
|  | 	kmax = j+1; | ||||||
|  | 	goto continued; | ||||||
|  |       } | ||||||
|  |     } | ||||||
|  |     QRiter = iter; | ||||||
|  |     return; | ||||||
|  |      | ||||||
|  |   continued: | ||||||
|  |     for(int j=0; j<kmax-1; ++j){ | ||||||
|  |       RealD dds = fabs(lmd[j])+fabs(lmd[j+1]); | ||||||
|  |       if(fabs(lme[j])+dds > dds){ | ||||||
|  | 	kmin = j+1; | ||||||
|  | 	break; | ||||||
|  |       } | ||||||
|  |     } | ||||||
|  |   } | ||||||
|  |   std::cout << GridLogError << "[QL method] Error - Too many iteration: "<<QRiter<<"\n"; | ||||||
|  |   abort(); | ||||||
|  | } | ||||||
|  | }; | ||||||
|  |  | ||||||
|  | NAMESPACE_END(Grid); | ||||||
|  | #endif | ||||||
							
								
								
									
										411
									
								
								Grid/algorithms/iterative/LocalCoherenceLanczos.h
									
									
									
									
									
										Normal file
									
								
							
							
						
						
									
										411
									
								
								Grid/algorithms/iterative/LocalCoherenceLanczos.h
									
									
									
									
									
										Normal file
									
								
							| @@ -0,0 +1,411 @@ | |||||||
|  | /************************************************************************************* | ||||||
|  |  | ||||||
|  |     Grid physics library, www.github.com/paboyle/Grid  | ||||||
|  |  | ||||||
|  |     Source file: ./lib/algorithms/iterative/LocalCoherenceLanczos.h | ||||||
|  |  | ||||||
|  |     Copyright (C) 2015 | ||||||
|  |  | ||||||
|  | Author: Christoph Lehner <clehner@bnl.gov> | ||||||
|  | Author: paboyle <paboyle@ph.ed.ac.uk> | ||||||
|  |  | ||||||
|  |     This program is free software; you can redistribute it and/or modify | ||||||
|  |     it under the terms of the GNU General Public License as published by | ||||||
|  |     the Free Software Foundation; either version 2 of the License, or | ||||||
|  |     (at your option) any later version. | ||||||
|  |  | ||||||
|  |     This program is distributed in the hope that it will be useful, | ||||||
|  |     but WITHOUT ANY WARRANTY; without even the implied warranty of | ||||||
|  |     MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the | ||||||
|  |     GNU General Public License for more details. | ||||||
|  |  | ||||||
|  |     You should have received a copy of the GNU General Public License along | ||||||
|  |     with this program; if not, write to the Free Software Foundation, Inc., | ||||||
|  |     51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. | ||||||
|  |  | ||||||
|  |     See the full license in the file "LICENSE" in the top level distribution directory | ||||||
|  | *************************************************************************************/ | ||||||
|  | /*  END LEGAL */ | ||||||
|  | #ifndef GRID_LOCAL_COHERENCE_IRL_H | ||||||
|  | #define GRID_LOCAL_COHERENCE_IRL_H | ||||||
|  |  | ||||||
|  | NAMESPACE_BEGIN(Grid);  | ||||||
|  |  | ||||||
|  | struct LanczosParams : Serializable { | ||||||
|  | public: | ||||||
|  |   GRID_SERIALIZABLE_CLASS_MEMBERS(LanczosParams, | ||||||
|  | 				  ChebyParams, Cheby,/*Chebyshev*/ | ||||||
|  | 				  int, Nstop,    /*Vecs in Lanczos must converge Nstop < Nk < Nm*/ | ||||||
|  | 				  int, Nk,       /*Vecs in Lanczos seek converge*/ | ||||||
|  | 				  int, Nm,       /*Total vecs in Lanczos include restart*/ | ||||||
|  | 				  RealD, resid,  /*residual*/ | ||||||
|  |  				  int, MaxIt,  | ||||||
|  | 				  RealD, betastp,  /* ? */ | ||||||
|  | 				  int, MinRes);    // Must restart | ||||||
|  | }; | ||||||
|  |  | ||||||
|  | struct LocalCoherenceLanczosParams : Serializable { | ||||||
|  | public: | ||||||
|  |   GRID_SERIALIZABLE_CLASS_MEMBERS(LocalCoherenceLanczosParams, | ||||||
|  | 				  bool, saveEvecs, | ||||||
|  | 				  bool, doFine, | ||||||
|  | 				  bool, doFineRead, | ||||||
|  | 				  bool, doCoarse, | ||||||
|  | 	       			  bool, doCoarseRead, | ||||||
|  | 				  LanczosParams, FineParams, | ||||||
|  | 				  LanczosParams, CoarseParams, | ||||||
|  | 				  ChebyParams,   Smoother, | ||||||
|  | 				  RealD        , coarse_relax_tol, | ||||||
|  | 				  std::vector<int>, blockSize, | ||||||
|  | 				  std::string, config, | ||||||
|  | 				  std::vector < ComplexD  >, omega, | ||||||
|  | 				  RealD, mass, | ||||||
|  | 				  RealD, M5); | ||||||
|  | }; | ||||||
|  |  | ||||||
|  | // Duplicate functionality; ProjectedFunctionHermOp could be used with the trivial function | ||||||
|  | template<class Fobj,class CComplex,int nbasis> | ||||||
|  | class ProjectedHermOp : public LinearFunction<Lattice<iVector<CComplex,nbasis > > > { | ||||||
|  | public: | ||||||
|  |   using LinearFunction<Lattice<iVector<CComplex,nbasis > > >::operator(); | ||||||
|  |   typedef iVector<CComplex,nbasis >           CoarseSiteVector; | ||||||
|  |   typedef Lattice<CoarseSiteVector>           CoarseField; | ||||||
|  |   typedef Lattice<CComplex>   CoarseScalar; // used for inner products on fine field | ||||||
|  |   typedef Lattice<Fobj>          FineField; | ||||||
|  |  | ||||||
|  |   LinearOperatorBase<FineField> &_Linop; | ||||||
|  |   std::vector<FineField>        &subspace; | ||||||
|  |  | ||||||
|  |   ProjectedHermOp(LinearOperatorBase<FineField>& linop, std::vector<FineField> & _subspace) :  | ||||||
|  |     _Linop(linop), subspace(_subspace) | ||||||
|  |   {   | ||||||
|  |     assert(subspace.size() >0); | ||||||
|  |   }; | ||||||
|  |  | ||||||
|  |   void operator()(const CoarseField& in, CoarseField& out) { | ||||||
|  |     GridBase *FineGrid = subspace[0].Grid();     | ||||||
|  |     int   checkerboard = subspace[0].Checkerboard(); | ||||||
|  |  | ||||||
|  |     FineField fin (FineGrid);     fin.Checkerboard()= checkerboard; | ||||||
|  |     FineField fout(FineGrid);   fout.Checkerboard() = checkerboard; | ||||||
|  |  | ||||||
|  |     blockPromote(in,fin,subspace);       std::cout<<GridLogIRL<<"ProjectedHermop : Promote to fine"<<std::endl; | ||||||
|  |     _Linop.HermOp(fin,fout);                   std::cout<<GridLogIRL<<"ProjectedHermop : HermOp (fine) "<<std::endl; | ||||||
|  |     blockProject(out,fout,subspace);     std::cout<<GridLogIRL<<"ProjectedHermop : Project to coarse "<<std::endl; | ||||||
|  |   } | ||||||
|  | }; | ||||||
|  |  | ||||||
|  | template<class Fobj,class CComplex,int nbasis> | ||||||
|  | class ProjectedFunctionHermOp : public LinearFunction<Lattice<iVector<CComplex,nbasis > > > { | ||||||
|  | public: | ||||||
|  |   using LinearFunction<Lattice<iVector<CComplex,nbasis > > >::operator(); | ||||||
|  |   typedef iVector<CComplex,nbasis >           CoarseSiteVector; | ||||||
|  |   typedef Lattice<CoarseSiteVector>           CoarseField; | ||||||
|  |   typedef Lattice<CComplex>   CoarseScalar; // used for inner products on fine field | ||||||
|  |   typedef Lattice<Fobj>          FineField; | ||||||
|  |  | ||||||
|  |  | ||||||
|  |   OperatorFunction<FineField>   & _poly; | ||||||
|  |   LinearOperatorBase<FineField> &_Linop; | ||||||
|  |   std::vector<FineField>        &subspace; | ||||||
|  |  | ||||||
|  |   ProjectedFunctionHermOp(OperatorFunction<FineField> & poly, | ||||||
|  | 			  LinearOperatorBase<FineField>& linop,  | ||||||
|  | 			  std::vector<FineField> & _subspace) : | ||||||
|  |     _poly(poly), | ||||||
|  |     _Linop(linop), | ||||||
|  |     subspace(_subspace) | ||||||
|  |   {  }; | ||||||
|  |  | ||||||
|  |   void operator()(const CoarseField& in, CoarseField& out) { | ||||||
|  |  | ||||||
|  |     GridBase *FineGrid = subspace[0].Grid();     | ||||||
|  |     int   checkerboard = subspace[0].Checkerboard(); | ||||||
|  |  | ||||||
|  |     FineField fin (FineGrid); fin.Checkerboard() =checkerboard; | ||||||
|  |     FineField fout(FineGrid);fout.Checkerboard() =checkerboard; | ||||||
|  |      | ||||||
|  |     blockPromote(in,fin,subspace);             std::cout<<GridLogIRL<<"ProjectedFunctionHermop : Promote to fine"<<std::endl; | ||||||
|  |     _poly(_Linop,fin,fout);                    std::cout<<GridLogIRL<<"ProjectedFunctionHermop : Poly "<<std::endl; | ||||||
|  |     blockProject(out,fout,subspace);           std::cout<<GridLogIRL<<"ProjectedFunctionHermop : Project to coarse "<<std::endl; | ||||||
|  |   } | ||||||
|  | }; | ||||||
|  |  | ||||||
|  | template<class Fobj,class CComplex,int nbasis> | ||||||
|  | class ImplicitlyRestartedLanczosSmoothedTester  : public ImplicitlyRestartedLanczosTester<Lattice<iVector<CComplex,nbasis > > > | ||||||
|  | { | ||||||
|  | public: | ||||||
|  |   typedef iVector<CComplex,nbasis >           CoarseSiteVector; | ||||||
|  |   typedef Lattice<CoarseSiteVector>           CoarseField; | ||||||
|  |   typedef Lattice<CComplex>   CoarseScalar; // used for inner products on fine field | ||||||
|  |   typedef Lattice<Fobj>          FineField; | ||||||
|  |  | ||||||
|  |   LinearFunction<CoarseField> & _Poly; | ||||||
|  |   OperatorFunction<FineField>   & _smoother; | ||||||
|  |   LinearOperatorBase<FineField> &_Linop; | ||||||
|  |   RealD                             _coarse_relax_tol; | ||||||
|  |   std::vector<FineField>        &_subspace; | ||||||
|  |    | ||||||
|  |   ImplicitlyRestartedLanczosSmoothedTester(LinearFunction<CoarseField>   &Poly, | ||||||
|  | 					   OperatorFunction<FineField>   &smoother, | ||||||
|  | 					   LinearOperatorBase<FineField> &Linop, | ||||||
|  | 					   std::vector<FineField>        &subspace, | ||||||
|  | 					   RealD coarse_relax_tol=5.0e3)  | ||||||
|  |     : _smoother(smoother), _Linop(Linop), _Poly(Poly), _subspace(subspace), | ||||||
|  |       _coarse_relax_tol(coarse_relax_tol)   | ||||||
|  |   {    }; | ||||||
|  |  | ||||||
|  |   int TestConvergence(int j,RealD eresid,CoarseField &B, RealD &eval,RealD evalMaxApprox) | ||||||
|  |   { | ||||||
|  |     CoarseField v(B); | ||||||
|  |     RealD eval_poly = eval; | ||||||
|  |  | ||||||
|  |     // Apply operator | ||||||
|  |     _Poly(B,v); | ||||||
|  |  | ||||||
|  |     RealD vnum = real(innerProduct(B,v)); // HermOp. | ||||||
|  |     RealD vden = norm2(B); | ||||||
|  |     RealD vv0  = norm2(v); | ||||||
|  |     eval   = vnum/vden; | ||||||
|  |     v -= eval*B; | ||||||
|  |  | ||||||
|  |     RealD vv = norm2(v) / ::pow(evalMaxApprox,2.0); | ||||||
|  |  | ||||||
|  |     std::cout.precision(13); | ||||||
|  |     std::cout<<GridLogIRL  << "[" << std::setw(3)<<j<<"] " | ||||||
|  | 	     <<"eval = "<<std::setw(25)<< eval << " (" << eval_poly << ")" | ||||||
|  | 	     <<" |H B[i] - eval[i]B[i]|^2 / evalMaxApprox^2 " << std::setw(25) << vv | ||||||
|  | 	     <<std::endl; | ||||||
|  |  | ||||||
|  |     int conv=0; | ||||||
|  |     if( (vv<eresid*eresid) ) conv = 1; | ||||||
|  |     return conv; | ||||||
|  |   } | ||||||
|  |   int ReconstructEval(int j,RealD eresid,CoarseField &B, RealD &eval,RealD evalMaxApprox) | ||||||
|  |   { | ||||||
|  |     GridBase *FineGrid = _subspace[0].Grid();     | ||||||
|  |     int checkerboard   = _subspace[0].Checkerboard(); | ||||||
|  |     FineField fB(FineGrid);fB.Checkerboard() =checkerboard; | ||||||
|  |     FineField fv(FineGrid);fv.Checkerboard() =checkerboard; | ||||||
|  |  | ||||||
|  |     blockPromote(B,fv,_subspace);   | ||||||
|  |      | ||||||
|  |     _smoother(_Linop,fv,fB);  | ||||||
|  |  | ||||||
|  |     RealD eval_poly = eval; | ||||||
|  |     _Linop.HermOp(fB,fv); | ||||||
|  |  | ||||||
|  |     RealD vnum = real(innerProduct(fB,fv)); // HermOp. | ||||||
|  |     RealD vden = norm2(fB); | ||||||
|  |     RealD vv0  = norm2(fv); | ||||||
|  |     eval   = vnum/vden; | ||||||
|  |     fv -= eval*fB; | ||||||
|  |     RealD vv = norm2(fv) / ::pow(evalMaxApprox,2.0); | ||||||
|  |  | ||||||
|  |     std::cout.precision(13); | ||||||
|  |     std::cout<<GridLogIRL  << "[" << std::setw(3)<<j<<"] " | ||||||
|  | 	     <<"eval = "<<std::setw(25)<< eval << " (" << eval_poly << ")" | ||||||
|  | 	     <<" |H B[i] - eval[i]B[i]|^2 / evalMaxApprox^2 " << std::setw(25) << vv | ||||||
|  | 	     <<std::endl; | ||||||
|  |     if ( j > nbasis ) eresid = eresid*_coarse_relax_tol; | ||||||
|  |     if( (vv<eresid*eresid) ) return 1; | ||||||
|  |     return 0; | ||||||
|  |   } | ||||||
|  | }; | ||||||
|  |  | ||||||
|  | //////////////////////////////////////////// | ||||||
|  | // Make serializable Lanczos params | ||||||
|  | //////////////////////////////////////////// | ||||||
|  | template<class Fobj,class CComplex,int nbasis> | ||||||
|  | class LocalCoherenceLanczos  | ||||||
|  | { | ||||||
|  | public: | ||||||
|  |   typedef iVector<CComplex,nbasis >           CoarseSiteVector; | ||||||
|  |   typedef Lattice<CComplex>                   CoarseScalar; // used for inner products on fine field | ||||||
|  |   typedef Lattice<CoarseSiteVector>           CoarseField; | ||||||
|  |   typedef Lattice<Fobj>                       FineField; | ||||||
|  |  | ||||||
|  | protected: | ||||||
|  |   GridBase *_CoarseGrid; | ||||||
|  |   GridBase *_FineGrid; | ||||||
|  |   int _checkerboard; | ||||||
|  |   LinearOperatorBase<FineField>                 & _FineOp; | ||||||
|  |    | ||||||
|  |   std::vector<RealD>                              &evals_fine; | ||||||
|  |   std::vector<RealD>                              &evals_coarse;  | ||||||
|  |   std::vector<FineField>                          &subspace; | ||||||
|  |   std::vector<CoarseField>                        &evec_coarse; | ||||||
|  |  | ||||||
|  | private: | ||||||
|  |   std::vector<RealD>                              _evals_fine; | ||||||
|  |   std::vector<RealD>                              _evals_coarse;  | ||||||
|  |   std::vector<FineField>                          _subspace; | ||||||
|  |   std::vector<CoarseField>                        _evec_coarse; | ||||||
|  |  | ||||||
|  | public: | ||||||
|  |  | ||||||
|  |   LocalCoherenceLanczos(GridBase *FineGrid, | ||||||
|  | 			GridBase *CoarseGrid, | ||||||
|  | 			LinearOperatorBase<FineField> &FineOp, | ||||||
|  | 			int checkerboard) : | ||||||
|  |     _CoarseGrid(CoarseGrid), | ||||||
|  |     _FineGrid(FineGrid), | ||||||
|  |     _FineOp(FineOp), | ||||||
|  |     _checkerboard(checkerboard), | ||||||
|  |     evals_fine  (_evals_fine), | ||||||
|  |     evals_coarse(_evals_coarse), | ||||||
|  |     subspace    (_subspace), | ||||||
|  |     evec_coarse(_evec_coarse) | ||||||
|  |   { | ||||||
|  |     evals_fine.resize(0); | ||||||
|  |     evals_coarse.resize(0); | ||||||
|  |   }; | ||||||
|  |   ////////////////////////////////////////////////////////////////////////// | ||||||
|  |   // Alternate constructore, external storage for use by Hadrons module | ||||||
|  |   ////////////////////////////////////////////////////////////////////////// | ||||||
|  |   LocalCoherenceLanczos(GridBase *FineGrid, | ||||||
|  | 			GridBase *CoarseGrid, | ||||||
|  | 			LinearOperatorBase<FineField> &FineOp, | ||||||
|  | 			int checkerboard, | ||||||
|  | 			std::vector<FineField>   &ext_subspace, | ||||||
|  | 			std::vector<CoarseField> &ext_coarse, | ||||||
|  | 			std::vector<RealD>       &ext_eval_fine, | ||||||
|  | 			std::vector<RealD>       &ext_eval_coarse | ||||||
|  | 			) : | ||||||
|  |     _CoarseGrid(CoarseGrid), | ||||||
|  |     _FineGrid(FineGrid), | ||||||
|  |     _FineOp(FineOp), | ||||||
|  |     _checkerboard(checkerboard), | ||||||
|  |     evals_fine  (ext_eval_fine),  | ||||||
|  |     evals_coarse(ext_eval_coarse), | ||||||
|  |     subspace    (ext_subspace), | ||||||
|  |     evec_coarse (ext_coarse) | ||||||
|  |   { | ||||||
|  |     evals_fine.resize(0); | ||||||
|  |     evals_coarse.resize(0); | ||||||
|  |   }; | ||||||
|  |  | ||||||
|  |   void Orthogonalise(void ) { | ||||||
|  |     CoarseScalar InnerProd(_CoarseGrid); | ||||||
|  |     std::cout << GridLogMessage <<" Gramm-Schmidt pass 1"<<std::endl; | ||||||
|  |     blockOrthogonalise(InnerProd,subspace); | ||||||
|  |     std::cout << GridLogMessage <<" Gramm-Schmidt pass 2"<<std::endl; | ||||||
|  |     blockOrthogonalise(InnerProd,subspace); | ||||||
|  |   }; | ||||||
|  |  | ||||||
|  |   template<typename T>  static RealD normalise(T& v)  | ||||||
|  |   { | ||||||
|  |     RealD nn = norm2(v); | ||||||
|  |     nn = ::sqrt(nn); | ||||||
|  |     v = v * (1.0/nn); | ||||||
|  |     return nn; | ||||||
|  |   } | ||||||
|  |   /* | ||||||
|  |   void fakeFine(void) | ||||||
|  |   { | ||||||
|  |     int Nk = nbasis; | ||||||
|  |     subspace.resize(Nk,_FineGrid); | ||||||
|  |     subspace[0]=1.0; | ||||||
|  |     subspace[0].Checkerboard()=_checkerboard; | ||||||
|  |     normalise(subspace[0]); | ||||||
|  |     PlainHermOp<FineField>    Op(_FineOp); | ||||||
|  |     for(int k=1;k<Nk;k++){ | ||||||
|  |       subspace[k].Checkerboard()=_checkerboard; | ||||||
|  |       Op(subspace[k-1],subspace[k]); | ||||||
|  |       normalise(subspace[k]); | ||||||
|  |     } | ||||||
|  |   } | ||||||
|  |   */ | ||||||
|  |  | ||||||
|  |   void testFine(RealD resid)  | ||||||
|  |   { | ||||||
|  |     assert(evals_fine.size() == nbasis); | ||||||
|  |     assert(subspace.size() == nbasis); | ||||||
|  |     PlainHermOp<FineField>    Op(_FineOp); | ||||||
|  |     ImplicitlyRestartedLanczosHermOpTester<FineField> SimpleTester(Op); | ||||||
|  |     for(int k=0;k<nbasis;k++){ | ||||||
|  |       assert(SimpleTester.ReconstructEval(k,resid,subspace[k],evals_fine[k],1.0)==1); | ||||||
|  |     } | ||||||
|  |   } | ||||||
|  |  | ||||||
|  |   void testCoarse(RealD resid,ChebyParams cheby_smooth,RealD relax)  | ||||||
|  |   { | ||||||
|  |     assert(evals_fine.size() == nbasis); | ||||||
|  |     assert(subspace.size() == nbasis); | ||||||
|  |     ////////////////////////////////////////////////////////////////////////////////////////////////// | ||||||
|  |     // create a smoother and see if we can get a cheap convergence test and smooth inside the IRL | ||||||
|  |     ////////////////////////////////////////////////////////////////////////////////////////////////// | ||||||
|  |     Chebyshev<FineField>                          ChebySmooth(cheby_smooth); | ||||||
|  |     ProjectedFunctionHermOp<Fobj,CComplex,nbasis> ChebyOp (ChebySmooth,_FineOp,subspace); | ||||||
|  |     ImplicitlyRestartedLanczosSmoothedTester<Fobj,CComplex,nbasis> ChebySmoothTester(ChebyOp,ChebySmooth,_FineOp,subspace,relax); | ||||||
|  |  | ||||||
|  |     for(int k=0;k<evec_coarse.size();k++){ | ||||||
|  |       if ( k < nbasis ) {  | ||||||
|  | 	assert(ChebySmoothTester.ReconstructEval(k,resid,evec_coarse[k],evals_coarse[k],1.0)==1); | ||||||
|  |       } else {  | ||||||
|  | 	assert(ChebySmoothTester.ReconstructEval(k,resid*relax,evec_coarse[k],evals_coarse[k],1.0)==1); | ||||||
|  |       } | ||||||
|  |     } | ||||||
|  |   } | ||||||
|  |  | ||||||
|  |   void calcFine(ChebyParams cheby_parms,int Nstop,int Nk,int Nm,RealD resid,  | ||||||
|  | 		RealD MaxIt, RealD betastp, int MinRes) | ||||||
|  |   { | ||||||
|  |     assert(nbasis<=Nm); | ||||||
|  |     Chebyshev<FineField>      Cheby(cheby_parms); | ||||||
|  |     FunctionHermOp<FineField> ChebyOp(Cheby,_FineOp); | ||||||
|  |     PlainHermOp<FineField>    Op(_FineOp); | ||||||
|  |  | ||||||
|  |     evals_fine.resize(Nm); | ||||||
|  |     subspace.resize(Nm,_FineGrid); | ||||||
|  |  | ||||||
|  |     ImplicitlyRestartedLanczos<FineField> IRL(ChebyOp,Op,Nstop,Nk,Nm,resid,MaxIt,betastp,MinRes); | ||||||
|  |  | ||||||
|  |     FineField src(_FineGrid);  | ||||||
|  |     typedef typename FineField::scalar_type Scalar; | ||||||
|  |     // src=1.0;  | ||||||
|  |     src=Scalar(1.0);  | ||||||
|  |     src.Checkerboard() = _checkerboard; | ||||||
|  |  | ||||||
|  |     int Nconv; | ||||||
|  |     IRL.calc(evals_fine,subspace,src,Nconv,false); | ||||||
|  |      | ||||||
|  |     // Shrink down to number saved | ||||||
|  |     assert(Nstop>=nbasis); | ||||||
|  |     assert(Nconv>=nbasis); | ||||||
|  |     evals_fine.resize(nbasis); | ||||||
|  |     subspace.resize(nbasis,_FineGrid); | ||||||
|  |   } | ||||||
|  |   void calcCoarse(ChebyParams cheby_op,ChebyParams cheby_smooth,RealD relax, | ||||||
|  | 		  int Nstop, int Nk, int Nm,RealD resid,  | ||||||
|  | 		  RealD MaxIt, RealD betastp, int MinRes) | ||||||
|  |   { | ||||||
|  |     Chebyshev<FineField>                          Cheby(cheby_op); | ||||||
|  |     ProjectedHermOp<Fobj,CComplex,nbasis>         Op(_FineOp,subspace); | ||||||
|  |     ProjectedFunctionHermOp<Fobj,CComplex,nbasis> ChebyOp (Cheby,_FineOp,subspace); | ||||||
|  |     ////////////////////////////////////////////////////////////////////////////////////////////////// | ||||||
|  |     // create a smoother and see if we can get a cheap convergence test and smooth inside the IRL | ||||||
|  |     ////////////////////////////////////////////////////////////////////////////////////////////////// | ||||||
|  |  | ||||||
|  |     Chebyshev<FineField>                                           ChebySmooth(cheby_smooth); | ||||||
|  |     ImplicitlyRestartedLanczosSmoothedTester<Fobj,CComplex,nbasis> ChebySmoothTester(ChebyOp,ChebySmooth,_FineOp,subspace,relax); | ||||||
|  |  | ||||||
|  |     evals_coarse.resize(Nm); | ||||||
|  |     evec_coarse.resize(Nm,_CoarseGrid); | ||||||
|  |  | ||||||
|  |     CoarseField src(_CoarseGrid);     src=1.0;  | ||||||
|  |  | ||||||
|  |     ImplicitlyRestartedLanczos<CoarseField> IRL(ChebyOp,ChebyOp,ChebySmoothTester,Nstop,Nk,Nm,resid,MaxIt,betastp,MinRes); | ||||||
|  |     int Nconv=0; | ||||||
|  |     IRL.calc(evals_coarse,evec_coarse,src,Nconv,false); | ||||||
|  |     assert(Nconv>=Nstop); | ||||||
|  |     evals_coarse.resize(Nstop); | ||||||
|  |     evec_coarse.resize (Nstop,_CoarseGrid); | ||||||
|  |     for (int i=0;i<Nstop;i++){ | ||||||
|  |       std::cout << i << " Coarse eval = " << evals_coarse[i]  << std::endl; | ||||||
|  |     } | ||||||
|  |   } | ||||||
|  | }; | ||||||
|  |  | ||||||
|  | NAMESPACE_END(Grid); | ||||||
|  | #endif | ||||||
							
								
								
									
										157
									
								
								Grid/algorithms/iterative/MinimalResidual.h
									
									
									
									
									
										Normal file
									
								
							
							
						
						
									
										157
									
								
								Grid/algorithms/iterative/MinimalResidual.h
									
									
									
									
									
										Normal file
									
								
							| @@ -0,0 +1,157 @@ | |||||||
|  | /************************************************************************************* | ||||||
|  |  | ||||||
|  | Grid physics library, www.github.com/paboyle/Grid | ||||||
|  |  | ||||||
|  | Source file: ./lib/algorithms/iterative/MinimalResidual.h | ||||||
|  |  | ||||||
|  | Copyright (C) 2015 | ||||||
|  |  | ||||||
|  | Author: Daniel Richtmann <daniel.richtmann@ur.de> | ||||||
|  |  | ||||||
|  | This program is free software; you can redistribute it and/or modify | ||||||
|  | it under the terms of the GNU General Public License as published by | ||||||
|  | the Free Software Foundation; either version 2 of the License, or | ||||||
|  | (at your option) any later version. | ||||||
|  |  | ||||||
|  | This program is distributed in the hope that it will be useful, | ||||||
|  | but WITHOUT ANY WARRANTY; without even the implied warranty of | ||||||
|  | MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the | ||||||
|  | GNU General Public License for more details. | ||||||
|  |  | ||||||
|  | You should have received a copy of the GNU General Public License along | ||||||
|  | with this program; if not, write to the Free Software Foundation, Inc., | ||||||
|  | 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. | ||||||
|  |  | ||||||
|  | See the full license in the file "LICENSE" in the top level distribution | ||||||
|  | directory | ||||||
|  | *************************************************************************************/ | ||||||
|  | /*  END LEGAL */ | ||||||
|  | #ifndef GRID_MINIMAL_RESIDUAL_H | ||||||
|  | #define GRID_MINIMAL_RESIDUAL_H | ||||||
|  |  | ||||||
|  | namespace Grid { | ||||||
|  |  | ||||||
|  | template<class Field> class MinimalResidual : public OperatorFunction<Field> { | ||||||
|  |  public: | ||||||
|  |   using OperatorFunction<Field>::operator(); | ||||||
|  |  | ||||||
|  |   bool ErrorOnNoConverge; // throw an assert when the MR fails to converge. | ||||||
|  |                           // Defaults true. | ||||||
|  |   RealD   Tolerance; | ||||||
|  |   Integer MaxIterations; | ||||||
|  |   RealD   overRelaxParam; | ||||||
|  |   Integer IterationsToComplete; // Number of iterations the MR took to finish. | ||||||
|  |                                 // Filled in upon completion | ||||||
|  |  | ||||||
|  |   MinimalResidual(RealD tol, Integer maxit, Real ovrelparam = 1.0, bool err_on_no_conv = true) | ||||||
|  |     : Tolerance(tol), MaxIterations(maxit), overRelaxParam(ovrelparam), ErrorOnNoConverge(err_on_no_conv){}; | ||||||
|  |  | ||||||
|  |   void operator()(LinearOperatorBase<Field> &Linop, const Field &src, Field &psi) { | ||||||
|  |  | ||||||
|  |     psi.Checkerboard() = src.Checkerboard(); | ||||||
|  |     conformable(psi, src); | ||||||
|  |  | ||||||
|  |     ComplexD a, c; | ||||||
|  |     RealD    d; | ||||||
|  |  | ||||||
|  |     Field Mr(src); | ||||||
|  |     Field r(src); | ||||||
|  |  | ||||||
|  |     // Initial residual computation & set up | ||||||
|  |     RealD guess = norm2(psi); | ||||||
|  |     assert(std::isnan(guess) == 0); | ||||||
|  |  | ||||||
|  |     RealD ssq = norm2(src); | ||||||
|  |     RealD rsq = Tolerance * Tolerance * ssq; | ||||||
|  |  | ||||||
|  |     Linop.Op(psi, Mr); | ||||||
|  |  | ||||||
|  |     r = src - Mr; | ||||||
|  |  | ||||||
|  |     RealD cp = norm2(r); | ||||||
|  |  | ||||||
|  |     std::cout << std::setprecision(4) << std::scientific; | ||||||
|  |     std::cout << GridLogIterative << "MinimalResidual: guess " << guess << std::endl; | ||||||
|  |     std::cout << GridLogIterative << "MinimalResidual:   src " << ssq << std::endl; | ||||||
|  |     std::cout << GridLogIterative << "MinimalResidual:  cp,r " << cp << std::endl; | ||||||
|  |  | ||||||
|  |     if (cp <= rsq) { | ||||||
|  |       return; | ||||||
|  |     } | ||||||
|  |  | ||||||
|  |     std::cout << GridLogIterative << "MinimalResidual: k=0 residual " << cp << " target " << rsq << std::endl; | ||||||
|  |  | ||||||
|  |     GridStopWatch LinalgTimer; | ||||||
|  |     GridStopWatch MatrixTimer; | ||||||
|  |     GridStopWatch SolverTimer; | ||||||
|  |  | ||||||
|  |     SolverTimer.Start(); | ||||||
|  |     int k; | ||||||
|  |     for (k = 1; k <= MaxIterations; k++) { | ||||||
|  |  | ||||||
|  |       MatrixTimer.Start(); | ||||||
|  |       Linop.Op(r, Mr); | ||||||
|  |       MatrixTimer.Stop(); | ||||||
|  |  | ||||||
|  |       LinalgTimer.Start(); | ||||||
|  |  | ||||||
|  |       c = innerProduct(Mr, r); | ||||||
|  |  | ||||||
|  |       d = norm2(Mr); | ||||||
|  |  | ||||||
|  |       a = c / d; | ||||||
|  |  | ||||||
|  |       a = a * overRelaxParam; | ||||||
|  |  | ||||||
|  |       psi = psi + r * a; | ||||||
|  |  | ||||||
|  |       r = r - Mr * a; | ||||||
|  |  | ||||||
|  |       cp = norm2(r); | ||||||
|  |  | ||||||
|  |       LinalgTimer.Stop(); | ||||||
|  |  | ||||||
|  |       std::cout << GridLogIterative << "MinimalResidual: Iteration " << k | ||||||
|  |                 << " residual " << cp << " target " << rsq << std::endl; | ||||||
|  |       std::cout << GridLogDebug << "a = " << a << " c = " << c << " d = " << d << std::endl; | ||||||
|  |  | ||||||
|  |       // Stopping condition | ||||||
|  |       if (cp <= rsq) { | ||||||
|  |         SolverTimer.Stop(); | ||||||
|  |  | ||||||
|  |         Linop.Op(psi, Mr); | ||||||
|  |         r = src - Mr; | ||||||
|  |  | ||||||
|  |         RealD srcnorm       = sqrt(ssq); | ||||||
|  |         RealD resnorm       = sqrt(norm2(r)); | ||||||
|  |         RealD true_residual = resnorm / srcnorm; | ||||||
|  |  | ||||||
|  |         std::cout << GridLogMessage        << "MinimalResidual Converged on iteration " << k | ||||||
|  |                   << " computed residual " << sqrt(cp / ssq) | ||||||
|  |                   << " true residual "     << true_residual | ||||||
|  |                   << " target "            << Tolerance << std::endl; | ||||||
|  |  | ||||||
|  |         std::cout << GridLogMessage << "MR Time elapsed: Total   " << SolverTimer.Elapsed() << std::endl; | ||||||
|  |         std::cout << GridLogMessage << "MR Time elapsed: Matrix  " << MatrixTimer.Elapsed() << std::endl; | ||||||
|  |         std::cout << GridLogMessage << "MR Time elapsed: Linalg  " << LinalgTimer.Elapsed() << std::endl; | ||||||
|  |  | ||||||
|  |         if (ErrorOnNoConverge) | ||||||
|  |           assert(true_residual / Tolerance < 10000.0); | ||||||
|  |  | ||||||
|  |         IterationsToComplete = k; | ||||||
|  |  | ||||||
|  |         return; | ||||||
|  |       } | ||||||
|  |     } | ||||||
|  |  | ||||||
|  |     std::cout << GridLogMessage << "MinimalResidual did NOT converge" | ||||||
|  |               << std::endl; | ||||||
|  |  | ||||||
|  |     if (ErrorOnNoConverge) | ||||||
|  |       assert(0); | ||||||
|  |  | ||||||
|  |     IterationsToComplete = k; | ||||||
|  |   } | ||||||
|  | }; | ||||||
|  | } // namespace Grid | ||||||
|  | #endif | ||||||
| @@ -0,0 +1,276 @@ | |||||||
|  | /************************************************************************************* | ||||||
|  |  | ||||||
|  | Grid physics library, www.github.com/paboyle/Grid | ||||||
|  |  | ||||||
|  | Source file: ./lib/algorithms/iterative/MixedPrecisionFlexibleGeneralisedMinimalResidual.h | ||||||
|  |  | ||||||
|  | Copyright (C) 2015 | ||||||
|  |  | ||||||
|  | Author: Daniel Richtmann <daniel.richtmann@ur.de> | ||||||
|  |  | ||||||
|  | This program is free software; you can redistribute it and/or modify | ||||||
|  | it under the terms of the GNU General Public License as published by | ||||||
|  | the Free Software Foundation; either version 2 of the License, or | ||||||
|  | (at your option) any later version. | ||||||
|  |  | ||||||
|  | This program is distributed in the hope that it will be useful, | ||||||
|  | but WITHOUT ANY WARRANTY; without even the implied warranty of | ||||||
|  | MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the | ||||||
|  | GNU General Public License for more details. | ||||||
|  |  | ||||||
|  | You should have received a copy of the GNU General Public License along | ||||||
|  | with this program; if not, write to the Free Software Foundation, Inc., | ||||||
|  | 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. | ||||||
|  |  | ||||||
|  | See the full license in the file "LICENSE" in the top level distribution | ||||||
|  | directory | ||||||
|  | *************************************************************************************/ | ||||||
|  | /*  END LEGAL */ | ||||||
|  | #ifndef GRID_MIXED_PRECISION_FLEXIBLE_GENERALISED_MINIMAL_RESIDUAL_H | ||||||
|  | #define GRID_MIXED_PRECISION_FLEXIBLE_GENERALISED_MINIMAL_RESIDUAL_H | ||||||
|  |  | ||||||
|  | namespace Grid { | ||||||
|  |  | ||||||
|  | template<class FieldD, class FieldF, typename std::enable_if<getPrecision<FieldD>::value == 2, int>::type = 0, typename std::enable_if< getPrecision<FieldF>::value == 1, int>::type = 0> | ||||||
|  | class MixedPrecisionFlexibleGeneralisedMinimalResidual : public OperatorFunction<FieldD> { | ||||||
|  |  public: | ||||||
|  |  | ||||||
|  |   using OperatorFunction<FieldD>::operator(); | ||||||
|  |  | ||||||
|  |   bool ErrorOnNoConverge; // Throw an assert when MPFGMRES fails to converge, | ||||||
|  |                           // defaults to true | ||||||
|  |  | ||||||
|  |   RealD   Tolerance; | ||||||
|  |  | ||||||
|  |   Integer MaxIterations; | ||||||
|  |   Integer RestartLength; | ||||||
|  |   Integer MaxNumberOfRestarts; | ||||||
|  |   Integer IterationCount; // Number of iterations the MPFGMRES took to finish, | ||||||
|  |                           // filled in upon completion | ||||||
|  |  | ||||||
|  |   GridStopWatch MatrixTimer; | ||||||
|  |   GridStopWatch PrecTimer; | ||||||
|  |   GridStopWatch LinalgTimer; | ||||||
|  |   GridStopWatch QrTimer; | ||||||
|  |   GridStopWatch CompSolutionTimer; | ||||||
|  |   GridStopWatch ChangePrecTimer; | ||||||
|  |  | ||||||
|  |   Eigen::MatrixXcd H; | ||||||
|  |  | ||||||
|  |   std::vector<ComplexD> y; | ||||||
|  |   std::vector<ComplexD> gamma; | ||||||
|  |   std::vector<ComplexD> c; | ||||||
|  |   std::vector<ComplexD> s; | ||||||
|  |  | ||||||
|  |   GridBase* SinglePrecGrid; | ||||||
|  |  | ||||||
|  |   LinearFunction<FieldF> &Preconditioner; | ||||||
|  |  | ||||||
|  |   MixedPrecisionFlexibleGeneralisedMinimalResidual(RealD   tol, | ||||||
|  |                                                    Integer maxit, | ||||||
|  |                                                    GridBase * sp_grid, | ||||||
|  |                                                    LinearFunction<FieldF> &Prec, | ||||||
|  |                                                    Integer restart_length, | ||||||
|  |                                                    bool    err_on_no_conv = true) | ||||||
|  |       : Tolerance(tol) | ||||||
|  |       , MaxIterations(maxit) | ||||||
|  |       , RestartLength(restart_length) | ||||||
|  |       , MaxNumberOfRestarts(MaxIterations/RestartLength + ((MaxIterations%RestartLength == 0) ? 0 : 1)) | ||||||
|  |       , ErrorOnNoConverge(err_on_no_conv) | ||||||
|  |       , H(Eigen::MatrixXcd::Zero(RestartLength, RestartLength + 1)) // sizes taken from DD-αAMG code base | ||||||
|  |       , y(RestartLength + 1, 0.) | ||||||
|  |       , gamma(RestartLength + 1, 0.) | ||||||
|  |       , c(RestartLength + 1, 0.) | ||||||
|  |       , s(RestartLength + 1, 0.) | ||||||
|  |       , SinglePrecGrid(sp_grid) | ||||||
|  |       , Preconditioner(Prec) {}; | ||||||
|  |  | ||||||
|  |   void operator()(LinearOperatorBase<FieldD> &LinOp, const FieldD &src, FieldD &psi) { | ||||||
|  |  | ||||||
|  |     psi.Checkerboard() = src.Checkerboard(); | ||||||
|  |     conformable(psi, src); | ||||||
|  |  | ||||||
|  |     RealD guess = norm2(psi); | ||||||
|  |     assert(std::isnan(guess) == 0); | ||||||
|  |  | ||||||
|  |     RealD cp; | ||||||
|  |     RealD ssq = norm2(src); | ||||||
|  |     RealD rsq = Tolerance * Tolerance * ssq; | ||||||
|  |  | ||||||
|  |     FieldD r(src.Grid()); | ||||||
|  |  | ||||||
|  |     std::cout << std::setprecision(4) << std::scientific; | ||||||
|  |     std::cout << GridLogIterative << "MPFGMRES: guess " << guess << std::endl; | ||||||
|  |     std::cout << GridLogIterative << "MPFGMRES:   src " << ssq   << std::endl; | ||||||
|  |  | ||||||
|  |     PrecTimer.Reset(); | ||||||
|  |     MatrixTimer.Reset(); | ||||||
|  |     LinalgTimer.Reset(); | ||||||
|  |     QrTimer.Reset(); | ||||||
|  |     CompSolutionTimer.Reset(); | ||||||
|  |     ChangePrecTimer.Reset(); | ||||||
|  |  | ||||||
|  |     GridStopWatch SolverTimer; | ||||||
|  |     SolverTimer.Start(); | ||||||
|  |  | ||||||
|  |     IterationCount = 0; | ||||||
|  |  | ||||||
|  |     for (int k=0; k<MaxNumberOfRestarts; k++) { | ||||||
|  |  | ||||||
|  |       cp = outerLoopBody(LinOp, src, psi, rsq); | ||||||
|  |  | ||||||
|  |       // Stopping condition | ||||||
|  |       if (cp <= rsq) { | ||||||
|  |  | ||||||
|  |         SolverTimer.Stop(); | ||||||
|  |  | ||||||
|  |         LinOp.Op(psi,r); | ||||||
|  |         axpy(r,-1.0,src,r); | ||||||
|  |  | ||||||
|  |         RealD srcnorm       = sqrt(ssq); | ||||||
|  |         RealD resnorm       = sqrt(norm2(r)); | ||||||
|  |         RealD true_residual = resnorm / srcnorm; | ||||||
|  |  | ||||||
|  |         std::cout << GridLogMessage        << "MPFGMRES: Converged on iteration " << IterationCount | ||||||
|  |                   << " computed residual " << sqrt(cp / ssq) | ||||||
|  |                   << " true residual "     << true_residual | ||||||
|  |                   << " target "            << Tolerance << std::endl; | ||||||
|  |  | ||||||
|  |         std::cout << GridLogMessage << "MPFGMRES Time elapsed: Total      " <<       SolverTimer.Elapsed() << std::endl; | ||||||
|  |         std::cout << GridLogMessage << "MPFGMRES Time elapsed: Precon     " <<         PrecTimer.Elapsed() << std::endl; | ||||||
|  |         std::cout << GridLogMessage << "MPFGMRES Time elapsed: Matrix     " <<       MatrixTimer.Elapsed() << std::endl; | ||||||
|  |         std::cout << GridLogMessage << "MPFGMRES Time elapsed: Linalg     " <<       LinalgTimer.Elapsed() << std::endl; | ||||||
|  |         std::cout << GridLogMessage << "MPFGMRES Time elapsed: QR         " <<           QrTimer.Elapsed() << std::endl; | ||||||
|  |         std::cout << GridLogMessage << "MPFGMRES Time elapsed: CompSol    " << CompSolutionTimer.Elapsed() << std::endl; | ||||||
|  |         std::cout << GridLogMessage << "MPFGMRES Time elapsed: PrecChange " <<   ChangePrecTimer.Elapsed() << std::endl; | ||||||
|  |         return; | ||||||
|  |       } | ||||||
|  |     } | ||||||
|  |  | ||||||
|  |     std::cout << GridLogMessage << "MPFGMRES did NOT converge" << std::endl; | ||||||
|  |  | ||||||
|  |     if (ErrorOnNoConverge) | ||||||
|  |       assert(0); | ||||||
|  |   } | ||||||
|  |  | ||||||
|  |   RealD outerLoopBody(LinearOperatorBase<FieldD> &LinOp, const FieldD &src, FieldD &psi, RealD rsq) { | ||||||
|  |  | ||||||
|  |     RealD cp = 0; | ||||||
|  |  | ||||||
|  |     FieldD w(src.Grid()); | ||||||
|  |     FieldD r(src.Grid()); | ||||||
|  |  | ||||||
|  |     // these should probably be made class members so that they are only allocated once, not in every restart | ||||||
|  |     std::vector<FieldD> v(RestartLength + 1, src.Grid()); for (auto &elem : v) elem = Zero(); | ||||||
|  |     std::vector<FieldD> z(RestartLength + 1, src.Grid()); for (auto &elem : z) elem = Zero(); | ||||||
|  |  | ||||||
|  |     MatrixTimer.Start(); | ||||||
|  |     LinOp.Op(psi, w); | ||||||
|  |     MatrixTimer.Stop(); | ||||||
|  |  | ||||||
|  |     LinalgTimer.Start(); | ||||||
|  |     r = src - w; | ||||||
|  |  | ||||||
|  |     gamma[0] = sqrt(norm2(r)); | ||||||
|  |  | ||||||
|  |     v[0] = (1. / gamma[0]) * r; | ||||||
|  |     LinalgTimer.Stop(); | ||||||
|  |  | ||||||
|  |     for (int i=0; i<RestartLength; i++) { | ||||||
|  |  | ||||||
|  |       IterationCount++; | ||||||
|  |  | ||||||
|  |       arnoldiStep(LinOp, v, z, w, i); | ||||||
|  |  | ||||||
|  |       qrUpdate(i); | ||||||
|  |  | ||||||
|  |       cp = norm(gamma[i+1]); | ||||||
|  |  | ||||||
|  |       std::cout << GridLogIterative << "MPFGMRES: Iteration " << IterationCount | ||||||
|  |                 << " residual " << cp << " target " << rsq << std::endl; | ||||||
|  |  | ||||||
|  |       if ((i == RestartLength - 1) || (IterationCount == MaxIterations) || (cp <= rsq)) { | ||||||
|  |  | ||||||
|  |         computeSolution(z, psi, i); | ||||||
|  |  | ||||||
|  |         return cp; | ||||||
|  |       } | ||||||
|  |     } | ||||||
|  |  | ||||||
|  |     assert(0); // Never reached | ||||||
|  |     return cp; | ||||||
|  |   } | ||||||
|  |  | ||||||
|  |   void arnoldiStep(LinearOperatorBase<FieldD> &LinOp, std::vector<FieldD> &v, std::vector<FieldD> &z, FieldD &w, int iter) { | ||||||
|  |  | ||||||
|  |     FieldF v_f(SinglePrecGrid); | ||||||
|  |     FieldF z_f(SinglePrecGrid); | ||||||
|  |  | ||||||
|  |     ChangePrecTimer.Start(); | ||||||
|  |     precisionChange(v_f, v[iter]); | ||||||
|  |     precisionChange(z_f, z[iter]); | ||||||
|  |     ChangePrecTimer.Stop(); | ||||||
|  |  | ||||||
|  |     PrecTimer.Start(); | ||||||
|  |     Preconditioner(v_f, z_f); | ||||||
|  |     PrecTimer.Stop(); | ||||||
|  |  | ||||||
|  |     ChangePrecTimer.Start(); | ||||||
|  |     precisionChange(z[iter], z_f); | ||||||
|  |     ChangePrecTimer.Stop(); | ||||||
|  |  | ||||||
|  |     MatrixTimer.Start(); | ||||||
|  |     LinOp.Op(z[iter], w); | ||||||
|  |     MatrixTimer.Stop(); | ||||||
|  |  | ||||||
|  |     LinalgTimer.Start(); | ||||||
|  |     for (int i = 0; i <= iter; ++i) { | ||||||
|  |       H(iter, i) = innerProduct(v[i], w); | ||||||
|  |       w = w - ComplexD(H(iter, i)) * v[i]; | ||||||
|  |     } | ||||||
|  |  | ||||||
|  |     H(iter, iter + 1) = sqrt(norm2(w)); | ||||||
|  |     v[iter + 1] = ComplexD(1. / H(iter, iter + 1)) * w; | ||||||
|  |     LinalgTimer.Stop(); | ||||||
|  |   } | ||||||
|  |  | ||||||
|  |   void qrUpdate(int iter) { | ||||||
|  |  | ||||||
|  |     QrTimer.Start(); | ||||||
|  |     for (int i = 0; i < iter ; ++i) { | ||||||
|  |       auto tmp       = -s[i] * ComplexD(H(iter, i)) + c[i] * ComplexD(H(iter, i + 1)); | ||||||
|  |       H(iter, i)     = conjugate(c[i]) * ComplexD(H(iter, i)) + conjugate(s[i]) * ComplexD(H(iter, i + 1)); | ||||||
|  |       H(iter, i + 1) = tmp; | ||||||
|  |     } | ||||||
|  |  | ||||||
|  |     // Compute new Givens Rotation | ||||||
|  |     auto nu = sqrt(std::norm(H(iter, iter)) + std::norm(H(iter, iter + 1))); | ||||||
|  |     c[iter]     = H(iter, iter) / nu; | ||||||
|  |     s[iter]     = H(iter, iter + 1) / nu; | ||||||
|  |  | ||||||
|  |     // Apply new Givens rotation | ||||||
|  |     H(iter, iter)     = nu; | ||||||
|  |     H(iter, iter + 1) = 0.; | ||||||
|  |  | ||||||
|  |     gamma[iter + 1] = -s[iter] * gamma[iter]; | ||||||
|  |     gamma[iter]     = conjugate(c[iter]) * gamma[iter]; | ||||||
|  |     QrTimer.Stop(); | ||||||
|  |   } | ||||||
|  |  | ||||||
|  |   void computeSolution(std::vector<FieldD> const &z, FieldD &psi, int iter) { | ||||||
|  |  | ||||||
|  |     CompSolutionTimer.Start(); | ||||||
|  |     for (int i = iter; i >= 0; i--) { | ||||||
|  |       y[i] = gamma[i]; | ||||||
|  |       for (int k = i + 1; k <= iter; k++) | ||||||
|  |         y[i] = y[i] - ComplexD(H(k, i)) * y[k]; | ||||||
|  |       y[i] = y[i] / ComplexD(H(i, i)); | ||||||
|  |     } | ||||||
|  |  | ||||||
|  |     for (int i = 0; i <= iter; i++) | ||||||
|  |       psi = psi + z[i] * y[i]; | ||||||
|  |     CompSolutionTimer.Stop(); | ||||||
|  |   } | ||||||
|  | }; | ||||||
|  | } | ||||||
|  | #endif | ||||||
							
								
								
									
										112
									
								
								Grid/algorithms/iterative/NormalEquations.h
									
									
									
									
									
										Normal file
									
								
							
							
						
						
									
										112
									
								
								Grid/algorithms/iterative/NormalEquations.h
									
									
									
									
									
										Normal file
									
								
							| @@ -0,0 +1,112 @@ | |||||||
|  | /************************************************************************************* | ||||||
|  |  | ||||||
|  |     Grid physics library, www.github.com/paboyle/Grid  | ||||||
|  |  | ||||||
|  |     Source file: ./lib/algorithms/iterative/NormalEquations.h | ||||||
|  |  | ||||||
|  |     Copyright (C) 2015 | ||||||
|  |  | ||||||
|  | Author: Peter Boyle <paboyle@ph.ed.ac.uk> | ||||||
|  |  | ||||||
|  |     This program is free software; you can redistribute it and/or modify | ||||||
|  |     it under the terms of the GNU General Public License as published by | ||||||
|  |     the Free Software Foundation; either version 2 of the License, or | ||||||
|  |     (at your option) any later version. | ||||||
|  |  | ||||||
|  |     This program is distributed in the hope that it will be useful, | ||||||
|  |     but WITHOUT ANY WARRANTY; without even the implied warranty of | ||||||
|  |     MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the | ||||||
|  |     GNU General Public License for more details. | ||||||
|  |  | ||||||
|  |     You should have received a copy of the GNU General Public License along | ||||||
|  |     with this program; if not, write to the Free Software Foundation, Inc., | ||||||
|  |     51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. | ||||||
|  |  | ||||||
|  |     See the full license in the file "LICENSE" in the top level distribution directory | ||||||
|  | *************************************************************************************/ | ||||||
|  | /*  END LEGAL */ | ||||||
|  | #ifndef GRID_NORMAL_EQUATIONS_H | ||||||
|  | #define GRID_NORMAL_EQUATIONS_H | ||||||
|  |  | ||||||
|  | NAMESPACE_BEGIN(Grid); | ||||||
|  |  | ||||||
|  | /////////////////////////////////////////////////////////////////////////////////////////////////////// | ||||||
|  | // Take a matrix and form an NE solver calling a Herm solver | ||||||
|  | /////////////////////////////////////////////////////////////////////////////////////////////////////// | ||||||
|  | template<class Field> class NormalEquations { | ||||||
|  | private: | ||||||
|  |   SparseMatrixBase<Field> & _Matrix; | ||||||
|  |   OperatorFunction<Field> & _HermitianSolver; | ||||||
|  |   LinearFunction<Field>   & _Guess; | ||||||
|  | public: | ||||||
|  |  | ||||||
|  |   ///////////////////////////////////////////////////// | ||||||
|  |   // Wrap the usual normal equations trick | ||||||
|  |   ///////////////////////////////////////////////////// | ||||||
|  |  NormalEquations(SparseMatrixBase<Field> &Matrix, OperatorFunction<Field> &HermitianSolver, | ||||||
|  | 		 LinearFunction<Field> &Guess)  | ||||||
|  |    :  _Matrix(Matrix), _HermitianSolver(HermitianSolver), _Guess(Guess) {};  | ||||||
|  |  | ||||||
|  |   void operator() (const Field &in, Field &out){ | ||||||
|  |   | ||||||
|  |     Field src(in.Grid()); | ||||||
|  |     Field tmp(in.Grid()); | ||||||
|  |  | ||||||
|  |     MdagMLinearOperator<SparseMatrixBase<Field>,Field> MdagMOp(_Matrix); | ||||||
|  |     _Matrix.Mdag(in,src); | ||||||
|  |     _Guess(src,out); | ||||||
|  |     _HermitianSolver(MdagMOp,src,out);  // Mdag M out = Mdag in | ||||||
|  |  | ||||||
|  |   }      | ||||||
|  | }; | ||||||
|  |  | ||||||
|  | template<class Field> class HPDSolver { | ||||||
|  | private: | ||||||
|  |   LinearOperatorBase<Field> & _Matrix; | ||||||
|  |   OperatorFunction<Field> & _HermitianSolver; | ||||||
|  |   LinearFunction<Field>   & _Guess; | ||||||
|  | public: | ||||||
|  |  | ||||||
|  |   ///////////////////////////////////////////////////// | ||||||
|  |   // Wrap the usual normal equations trick | ||||||
|  |   ///////////////////////////////////////////////////// | ||||||
|  |  HPDSolver(LinearOperatorBase<Field> &Matrix, | ||||||
|  | 	   OperatorFunction<Field> &HermitianSolver, | ||||||
|  | 	   LinearFunction<Field> &Guess)  | ||||||
|  |    :  _Matrix(Matrix), _HermitianSolver(HermitianSolver), _Guess(Guess) {};  | ||||||
|  |  | ||||||
|  |   void operator() (const Field &in, Field &out){ | ||||||
|  |   | ||||||
|  |     _Guess(in,out); | ||||||
|  |     _HermitianSolver(_Matrix,in,out);  // Mdag M out = Mdag in | ||||||
|  |  | ||||||
|  |   }      | ||||||
|  | }; | ||||||
|  |  | ||||||
|  |  | ||||||
|  | template<class Field> class MdagMSolver { | ||||||
|  | private: | ||||||
|  |   SparseMatrixBase<Field> & _Matrix; | ||||||
|  |   OperatorFunction<Field> & _HermitianSolver; | ||||||
|  |   LinearFunction<Field>   & _Guess; | ||||||
|  | public: | ||||||
|  |  | ||||||
|  |   ///////////////////////////////////////////////////// | ||||||
|  |   // Wrap the usual normal equations trick | ||||||
|  |   ///////////////////////////////////////////////////// | ||||||
|  |  MdagMSolver(SparseMatrixBase<Field> &Matrix, OperatorFunction<Field> &HermitianSolver, | ||||||
|  | 	     LinearFunction<Field> &Guess)  | ||||||
|  |    :  _Matrix(Matrix), _HermitianSolver(HermitianSolver), _Guess(Guess) {};  | ||||||
|  |  | ||||||
|  |   void operator() (const Field &in, Field &out){ | ||||||
|  |   | ||||||
|  |     MdagMLinearOperator<SparseMatrixBase<Field>,Field> MdagMOp(_Matrix); | ||||||
|  |     _Guess(in,out); | ||||||
|  |  | ||||||
|  |     _HermitianSolver(MdagMOp,in,out);  // Mdag M out = Mdag in | ||||||
|  |  | ||||||
|  |   }      | ||||||
|  | }; | ||||||
|  |  | ||||||
|  | NAMESPACE_END(Grid); | ||||||
|  | #endif | ||||||
							
								
								
									
										45
									
								
								Grid/algorithms/iterative/PowerMethod.h
									
									
									
									
									
										Normal file
									
								
							
							
						
						
									
										45
									
								
								Grid/algorithms/iterative/PowerMethod.h
									
									
									
									
									
										Normal file
									
								
							| @@ -0,0 +1,45 @@ | |||||||
|  | #pragma once | ||||||
|  | namespace Grid { | ||||||
|  | template<class Field> class PowerMethod   | ||||||
|  | {  | ||||||
|  |  public:  | ||||||
|  |  | ||||||
|  |   template<typename T>  static RealD normalise(T& v)  | ||||||
|  |   { | ||||||
|  |     RealD nn = norm2(v); | ||||||
|  |     nn = sqrt(nn); | ||||||
|  |     v = v * (1.0/nn); | ||||||
|  |     return nn; | ||||||
|  |   } | ||||||
|  |  | ||||||
|  |   RealD operator()(LinearOperatorBase<Field> &HermOp, const Field &src)  | ||||||
|  |   {  | ||||||
|  |     GridBase *grid = src.Grid();  | ||||||
|  |      | ||||||
|  |     // quickly get an idea of the largest eigenvalue to more properly normalize the residuum  | ||||||
|  |     RealD evalMaxApprox = 0.0;  | ||||||
|  |     auto src_n = src;  | ||||||
|  |     auto tmp = src;  | ||||||
|  |     const int _MAX_ITER_EST_ = 50;  | ||||||
|  |  | ||||||
|  |     for (int i=0;i<_MAX_ITER_EST_;i++) {  | ||||||
|  |        | ||||||
|  |       normalise(src_n);  | ||||||
|  |       HermOp.HermOp(src_n,tmp);  | ||||||
|  |       RealD vnum = real(innerProduct(src_n,tmp)); // HermOp.  | ||||||
|  |       RealD vden = norm2(src_n);  | ||||||
|  |       RealD na = vnum/vden;  | ||||||
|  |        | ||||||
|  |       if ( (fabs(evalMaxApprox/na - 1.0) < 0.001) || (i==_MAX_ITER_EST_-1) ) {  | ||||||
|  |  	evalMaxApprox = na;  | ||||||
|  | 	std::cout << GridLogMessage << " Approximation of largest eigenvalue: " << evalMaxApprox << std::endl; | ||||||
|  |  	return evalMaxApprox;  | ||||||
|  |       }  | ||||||
|  |       evalMaxApprox = na;  | ||||||
|  |       src_n = tmp; | ||||||
|  |     } | ||||||
|  |     assert(0); | ||||||
|  |     return 0; | ||||||
|  |   } | ||||||
|  | }; | ||||||
|  | } | ||||||
							
								
								
									
										119
									
								
								Grid/algorithms/iterative/PrecConjugateResidual.h
									
									
									
									
									
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										119
									
								
								Grid/algorithms/iterative/PrecConjugateResidual.h
									
									
									
									
									
										Normal file
									
								
							| @@ -0,0 +1,119 @@ | |||||||
|  | /************************************************************************************* | ||||||
|  |  | ||||||
|  |     Grid physics library, www.github.com/paboyle/Grid  | ||||||
|  |  | ||||||
|  |     Source file: ./lib/algorithms/iterative/PrecConjugateResidual.h | ||||||
|  |  | ||||||
|  |     Copyright (C) 2015 | ||||||
|  |  | ||||||
|  | Author: Peter Boyle <paboyle@ph.ed.ac.uk> | ||||||
|  |  | ||||||
|  |     This program is free software; you can redistribute it and/or modify | ||||||
|  |     it under the terms of the GNU General Public License as published by | ||||||
|  |     the Free Software Foundation; either version 2 of the License, or | ||||||
|  |     (at your option) any later version. | ||||||
|  |  | ||||||
|  |     This program is distributed in the hope that it will be useful, | ||||||
|  |     but WITHOUT ANY WARRANTY; without even the implied warranty of | ||||||
|  |     MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the | ||||||
|  |     GNU General Public License for more details. | ||||||
|  |  | ||||||
|  |     You should have received a copy of the GNU General Public License along | ||||||
|  |     with this program; if not, write to the Free Software Foundation, Inc., | ||||||
|  |     51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. | ||||||
|  |  | ||||||
|  |     See the full license in the file "LICENSE" in the top level distribution directory | ||||||
|  | *************************************************************************************/ | ||||||
|  | /*  END LEGAL */ | ||||||
|  | #ifndef GRID_PREC_CONJUGATE_RESIDUAL_H | ||||||
|  | #define GRID_PREC_CONJUGATE_RESIDUAL_H | ||||||
|  |  | ||||||
|  | NAMESPACE_BEGIN(Grid); | ||||||
|  |  | ||||||
|  | ///////////////////////////////////////////////////////////// | ||||||
|  | // Base classes for iterative processes based on operators | ||||||
|  | // single input vec, single output vec. | ||||||
|  | ///////////////////////////////////////////////////////////// | ||||||
|  |  | ||||||
|  | template<class Field>  | ||||||
|  | class PrecConjugateResidual : public OperatorFunction<Field> { | ||||||
|  | public:                                                 | ||||||
|  |   RealD   Tolerance; | ||||||
|  |   Integer MaxIterations; | ||||||
|  |   int verbose; | ||||||
|  |   LinearFunction<Field> &Preconditioner; | ||||||
|  |  | ||||||
|  |   PrecConjugateResidual(RealD tol,Integer maxit,LinearFunction<Field> &Prec) : Tolerance(tol), MaxIterations(maxit),      Preconditioner(Prec) | ||||||
|  |   {  | ||||||
|  |     verbose=1; | ||||||
|  |   }; | ||||||
|  |  | ||||||
|  |   void operator() (LinearOperatorBase<Field> &Linop,const Field &src, Field &psi){ | ||||||
|  |  | ||||||
|  |     RealD a, b, c, d; | ||||||
|  |     RealD cp, ssq,rsq; | ||||||
|  |        | ||||||
|  |     RealD rAr, rAAr, rArp; | ||||||
|  |     RealD pAp, pAAp; | ||||||
|  |  | ||||||
|  |     GridBase *grid = src.Grid(); | ||||||
|  |     Field r(grid),  p(grid), Ap(grid), Ar(grid), z(grid); | ||||||
|  |        | ||||||
|  |     psi=zero; | ||||||
|  |     r  = src; | ||||||
|  |     Preconditioner(r,p); | ||||||
|  |  | ||||||
|  |        | ||||||
|  |  | ||||||
|  |     Linop.HermOpAndNorm(p,Ap,pAp,pAAp); | ||||||
|  |     Ar=Ap; | ||||||
|  |     rAr=pAp; | ||||||
|  |     rAAr=pAAp; | ||||||
|  |  | ||||||
|  |     cp =norm2(r); | ||||||
|  |     ssq=norm2(src); | ||||||
|  |     rsq=Tolerance*Tolerance*ssq; | ||||||
|  |  | ||||||
|  |     if (verbose) std::cout<<GridLogMessage<<"PrecConjugateResidual: iteration " <<0<<" residual "<<cp<< " target"<< rsq<<std::endl; | ||||||
|  |  | ||||||
|  |     for(int k=0;k<MaxIterations;k++){ | ||||||
|  |  | ||||||
|  |  | ||||||
|  |       Preconditioner(Ap,z); | ||||||
|  |       RealD rq= real(innerProduct(Ap,z));  | ||||||
|  |  | ||||||
|  |       a = rAr/rq; | ||||||
|  |  | ||||||
|  |       axpy(psi,a,p,psi); | ||||||
|  |       cp = axpy_norm(r,-a,z,r); | ||||||
|  |  | ||||||
|  |       rArp=rAr; | ||||||
|  |  | ||||||
|  |       Linop.HermOpAndNorm(r,Ar,rAr,rAAr); | ||||||
|  |  | ||||||
|  |       b   =rAr/rArp; | ||||||
|  |   | ||||||
|  |       axpy(p,b,p,r); | ||||||
|  |       pAAp=axpy_norm(Ap,b,Ap,Ar); | ||||||
|  | 	 | ||||||
|  |       if(verbose) std::cout<<GridLogMessage<<"PrecConjugateResidual: iteration " <<k<<" residual "<<cp<< " target"<< rsq<<std::endl; | ||||||
|  |  | ||||||
|  |       if(cp<rsq) { | ||||||
|  | 	Linop.HermOp(psi,Ap); | ||||||
|  | 	axpy(r,-1.0,src,Ap); | ||||||
|  | 	RealD true_resid = norm2(r)/ssq; | ||||||
|  | 	std::cout<<GridLogMessage<<"PrecConjugateResidual: Converged on iteration " <<k | ||||||
|  | 		 << " computed residual "<<sqrt(cp/ssq) | ||||||
|  | 		 << " true residual "<<sqrt(true_resid) | ||||||
|  | 		 << " target "       <<Tolerance <<std::endl; | ||||||
|  | 	return; | ||||||
|  |       } | ||||||
|  |  | ||||||
|  |     } | ||||||
|  |  | ||||||
|  |     std::cout<<GridLogMessage<<"PrecConjugateResidual did NOT converge"<<std::endl; | ||||||
|  |     assert(0); | ||||||
|  |   } | ||||||
|  | }; | ||||||
|  | NAMESPACE_END(Grid); | ||||||
|  | #endif | ||||||
							
								
								
									
										239
									
								
								Grid/algorithms/iterative/PrecGeneralisedConjugateResidual.h
									
									
									
									
									
										Normal file
									
								
							
							
						
						
									
										239
									
								
								Grid/algorithms/iterative/PrecGeneralisedConjugateResidual.h
									
									
									
									
									
										Normal file
									
								
							| @@ -0,0 +1,239 @@ | |||||||
|  | /************************************************************************************* | ||||||
|  |  | ||||||
|  |     Grid physics library, www.github.com/paboyle/Grid  | ||||||
|  |  | ||||||
|  |     Source file: ./lib/algorithms/iterative/PrecGeneralisedConjugateResidual.h | ||||||
|  |  | ||||||
|  |     Copyright (C) 2015 | ||||||
|  |  | ||||||
|  | Author: Azusa Yamaguchi <ayamaguc@staffmail.ed.ac.uk> | ||||||
|  | Author: Peter Boyle <paboyle@ph.ed.ac.uk> | ||||||
|  |  | ||||||
|  |     This program is free software; you can redistribute it and/or modify | ||||||
|  |     it under the terms of the GNU General Public License as published by | ||||||
|  |     the Free Software Foundation; either version 2 of the License, or | ||||||
|  |     (at your option) any later version. | ||||||
|  |  | ||||||
|  |     This program is distributed in the hope that it will be useful, | ||||||
|  |     but WITHOUT ANY WARRANTY; without even the implied warranty of | ||||||
|  |     MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the | ||||||
|  |     GNU General Public License for more details. | ||||||
|  |  | ||||||
|  |     You should have received a copy of the GNU General Public License along | ||||||
|  |     with this program; if not, write to the Free Software Foundation, Inc., | ||||||
|  |     51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. | ||||||
|  |  | ||||||
|  |     See the full license in the file "LICENSE" in the top level distribution directory | ||||||
|  | *************************************************************************************/ | ||||||
|  | /*  END LEGAL */ | ||||||
|  | #ifndef GRID_PREC_GCR_H | ||||||
|  | #define GRID_PREC_GCR_H | ||||||
|  |  | ||||||
|  | /////////////////////////////////////////////////////////////////////////////////////////////////////// | ||||||
|  | //VPGCR Abe and Zhang, 2005. | ||||||
|  | //INTERNATIONAL JOURNAL OF NUMERICAL ANALYSIS AND MODELING | ||||||
|  | //Computing and Information Volume 2, Number 2, Pages 147-161 | ||||||
|  | //NB. Likely not original reference since they are focussing on a preconditioner variant. | ||||||
|  | //    but VPGCR was nicely written up in their paper | ||||||
|  | /////////////////////////////////////////////////////////////////////////////////////////////////////// | ||||||
|  | NAMESPACE_BEGIN(Grid); | ||||||
|  |  | ||||||
|  | #define GCRLogLevel std::cout << GridLogMessage <<std::string(level,'\t')<< " Level "<<level<<" "  | ||||||
|  |  | ||||||
|  | template<class Field> | ||||||
|  | class PrecGeneralisedConjugateResidual : public LinearFunction<Field> { | ||||||
|  | public:                                                 | ||||||
|  |   using LinearFunction<Field>::operator(); | ||||||
|  |   RealD   Tolerance; | ||||||
|  |   Integer MaxIterations; | ||||||
|  |   int verbose; | ||||||
|  |   int mmax; | ||||||
|  |   int nstep; | ||||||
|  |   int steps; | ||||||
|  |   int level; | ||||||
|  |   GridStopWatch PrecTimer; | ||||||
|  |   GridStopWatch MatTimer; | ||||||
|  |   GridStopWatch LinalgTimer; | ||||||
|  |  | ||||||
|  |   LinearFunction<Field>     &Preconditioner; | ||||||
|  |   LinearOperatorBase<Field> &Linop; | ||||||
|  |  | ||||||
|  |   void Level(int lv) { level=lv; }; | ||||||
|  |  | ||||||
|  |   PrecGeneralisedConjugateResidual(RealD tol,Integer maxit,LinearOperatorBase<Field> &_Linop,LinearFunction<Field> &Prec,int _mmax,int _nstep) :  | ||||||
|  |     Tolerance(tol),  | ||||||
|  |     MaxIterations(maxit), | ||||||
|  |     Linop(_Linop), | ||||||
|  |     Preconditioner(Prec), | ||||||
|  |     mmax(_mmax), | ||||||
|  |     nstep(_nstep) | ||||||
|  |   {  | ||||||
|  |     level=1; | ||||||
|  |     verbose=1; | ||||||
|  |   }; | ||||||
|  |  | ||||||
|  |   void operator() (const Field &src, Field &psi){ | ||||||
|  |  | ||||||
|  |     psi=Zero(); | ||||||
|  |     RealD cp, ssq,rsq; | ||||||
|  |     ssq=norm2(src); | ||||||
|  |     rsq=Tolerance*Tolerance*ssq; | ||||||
|  |        | ||||||
|  |     Field r(src.Grid()); | ||||||
|  |  | ||||||
|  |     PrecTimer.Reset(); | ||||||
|  |     MatTimer.Reset(); | ||||||
|  |     LinalgTimer.Reset(); | ||||||
|  |  | ||||||
|  |     GridStopWatch SolverTimer; | ||||||
|  |     SolverTimer.Start(); | ||||||
|  |  | ||||||
|  |     steps=0; | ||||||
|  |     for(int k=0;k<MaxIterations;k++){ | ||||||
|  |  | ||||||
|  |       cp=GCRnStep(src,psi,rsq); | ||||||
|  |  | ||||||
|  |       GCRLogLevel <<"PGCR("<<mmax<<","<<nstep<<") "<< steps <<" steps cp = "<<cp<<" target "<<rsq <<std::endl; | ||||||
|  |  | ||||||
|  |       if(cp<rsq) { | ||||||
|  |  | ||||||
|  | 	SolverTimer.Stop(); | ||||||
|  |  | ||||||
|  | 	Linop.HermOp(psi,r); | ||||||
|  | 	axpy(r,-1.0,src,r); | ||||||
|  | 	RealD tr = norm2(r); | ||||||
|  | 	GCRLogLevel<<"PGCR: Converged on iteration " <<steps | ||||||
|  | 		 << " computed residual "<<sqrt(cp/ssq) | ||||||
|  | 		 << " true residual "    <<sqrt(tr/ssq) | ||||||
|  | 		 << " target "           <<Tolerance <<std::endl; | ||||||
|  |  | ||||||
|  | 	GCRLogLevel<<"PGCR Time elapsed: Total  "<< SolverTimer.Elapsed() <<std::endl; | ||||||
|  | 	/* | ||||||
|  | 	  GCRLogLevel<<"PGCR Time elapsed: Precon "<<   PrecTimer.Elapsed() <<std::endl; | ||||||
|  | 	  GCRLogLevel<<"PGCR Time elapsed: Matrix "<<    MatTimer.Elapsed() <<std::endl; | ||||||
|  | 	  GCRLogLevel<<"PGCR Time elapsed: Linalg "<< LinalgTimer.Elapsed() <<std::endl; | ||||||
|  | 	*/ | ||||||
|  | 	return; | ||||||
|  |       } | ||||||
|  |  | ||||||
|  |     } | ||||||
|  |     GCRLogLevel<<"Variable Preconditioned GCR did not converge"<<std::endl; | ||||||
|  |     //    assert(0); | ||||||
|  |   } | ||||||
|  |  | ||||||
|  |   RealD GCRnStep(const Field &src, Field &psi,RealD rsq){ | ||||||
|  |  | ||||||
|  |     RealD cp; | ||||||
|  |     RealD a, b; | ||||||
|  |     RealD zAz, zAAz; | ||||||
|  |     RealD rq; | ||||||
|  |  | ||||||
|  |     GridBase *grid = src.Grid(); | ||||||
|  |  | ||||||
|  |     Field r(grid); | ||||||
|  |     Field z(grid); | ||||||
|  |     Field tmp(grid); | ||||||
|  |     Field ttmp(grid); | ||||||
|  |     Field Az(grid); | ||||||
|  |  | ||||||
|  |     //////////////////////////////// | ||||||
|  |     // history for flexible orthog | ||||||
|  |     //////////////////////////////// | ||||||
|  |     std::vector<Field> q(mmax,grid); | ||||||
|  |     std::vector<Field> p(mmax,grid); | ||||||
|  |     std::vector<RealD> qq(mmax); | ||||||
|  |        | ||||||
|  |     GCRLogLevel<< "PGCR nStep("<<nstep<<")"<<std::endl; | ||||||
|  |  | ||||||
|  |     ////////////////////////////////// | ||||||
|  |     // initial guess x0 is taken as nonzero. | ||||||
|  |     // r0=src-A x0 = src | ||||||
|  |     ////////////////////////////////// | ||||||
|  |     MatTimer.Start(); | ||||||
|  |     Linop.HermOpAndNorm(psi,Az,zAz,zAAz);  | ||||||
|  |     MatTimer.Stop(); | ||||||
|  |      | ||||||
|  |  | ||||||
|  |     LinalgTimer.Start(); | ||||||
|  |     r=src-Az; | ||||||
|  |     LinalgTimer.Stop(); | ||||||
|  |     GCRLogLevel<< "PGCR true residual r = src - A psi   "<<norm2(r) <<std::endl; | ||||||
|  |      | ||||||
|  |     ///////////////////// | ||||||
|  |     // p = Prec(r) | ||||||
|  |     ///////////////////// | ||||||
|  |  | ||||||
|  |     PrecTimer.Start(); | ||||||
|  |     Preconditioner(r,z); | ||||||
|  |     PrecTimer.Stop(); | ||||||
|  |  | ||||||
|  |     MatTimer.Start(); | ||||||
|  |     Linop.HermOpAndNorm(z,Az,zAz,zAAz);  | ||||||
|  |     MatTimer.Stop(); | ||||||
|  |  | ||||||
|  |     LinalgTimer.Start(); | ||||||
|  |  | ||||||
|  |     //p[0],q[0],qq[0]  | ||||||
|  |     p[0]= z; | ||||||
|  |     q[0]= Az; | ||||||
|  |     qq[0]= zAAz; | ||||||
|  |      | ||||||
|  |     cp =norm2(r); | ||||||
|  |     LinalgTimer.Stop(); | ||||||
|  |  | ||||||
|  |     for(int k=0;k<nstep;k++){ | ||||||
|  |  | ||||||
|  |       steps++; | ||||||
|  |  | ||||||
|  |       int kp     = k+1; | ||||||
|  |       int peri_k = k %mmax; | ||||||
|  |       int peri_kp= kp%mmax; | ||||||
|  |  | ||||||
|  |       LinalgTimer.Start(); | ||||||
|  |       rq= real(innerProduct(r,q[peri_k])); // what if rAr not real? | ||||||
|  |       a = rq/qq[peri_k]; | ||||||
|  |  | ||||||
|  |       axpy(psi,a,p[peri_k],psi);          | ||||||
|  |  | ||||||
|  |       cp = axpy_norm(r,-a,q[peri_k],r); | ||||||
|  |       LinalgTimer.Stop(); | ||||||
|  |  | ||||||
|  |       GCRLogLevel<< "PGCR step["<<steps<<"]  resid " << cp << " target " <<rsq<<std::endl;  | ||||||
|  |  | ||||||
|  |       if((k==nstep-1)||(cp<rsq)){ | ||||||
|  | 	return cp; | ||||||
|  |       } | ||||||
|  |  | ||||||
|  |  | ||||||
|  |       PrecTimer.Start(); | ||||||
|  |       Preconditioner(r,z);// solve Az = r | ||||||
|  |       PrecTimer.Stop(); | ||||||
|  |  | ||||||
|  |       MatTimer.Start(); | ||||||
|  |       Linop.HermOpAndNorm(z,Az,zAz,zAAz); | ||||||
|  |       MatTimer.Stop(); | ||||||
|  |  | ||||||
|  |       LinalgTimer.Start(); | ||||||
|  |  | ||||||
|  |       q[peri_kp]=Az; | ||||||
|  |       p[peri_kp]=z; | ||||||
|  |  | ||||||
|  |       int northog = ((kp)>(mmax-1))?(mmax-1):(kp);  // if more than mmax done, we orthog all mmax history. | ||||||
|  |       for(int back=0;back<northog;back++){ | ||||||
|  |  | ||||||
|  | 	int peri_back=(k-back)%mmax;   	  assert((k-back)>=0); | ||||||
|  |  | ||||||
|  | 	b=-real(innerProduct(q[peri_back],Az))/qq[peri_back]; | ||||||
|  | 	p[peri_kp]=p[peri_kp]+b*p[peri_back]; | ||||||
|  | 	q[peri_kp]=q[peri_kp]+b*q[peri_back]; | ||||||
|  |  | ||||||
|  |       } | ||||||
|  |       qq[peri_kp]=norm2(q[peri_kp]); // could use axpy_norm | ||||||
|  |       LinalgTimer.Stop(); | ||||||
|  |     } | ||||||
|  |     assert(0); // never reached | ||||||
|  |     return cp; | ||||||
|  |   } | ||||||
|  | }; | ||||||
|  | NAMESPACE_END(Grid); | ||||||
|  | #endif | ||||||
| @@ -0,0 +1,242 @@ | |||||||
|  | /************************************************************************************* | ||||||
|  |  | ||||||
|  |     Grid physics library, www.github.com/paboyle/Grid  | ||||||
|  |  | ||||||
|  |     Source file: ./lib/algorithms/iterative/PrecGeneralisedConjugateResidual.h | ||||||
|  |  | ||||||
|  |     Copyright (C) 2015 | ||||||
|  |  | ||||||
|  | Author: Azusa Yamaguchi <ayamaguc@staffmail.ed.ac.uk> | ||||||
|  | Author: Peter Boyle <paboyle@ph.ed.ac.uk> | ||||||
|  |  | ||||||
|  |     This program is free software; you can redistribute it and/or modify | ||||||
|  |     it under the terms of the GNU General Public License as published by | ||||||
|  |     the Free Software Foundation; either version 2 of the License, or | ||||||
|  |     (at your option) any later version. | ||||||
|  |  | ||||||
|  |     This program is distributed in the hope that it will be useful, | ||||||
|  |     but WITHOUT ANY WARRANTY; without even the implied warranty of | ||||||
|  |     MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the | ||||||
|  |     GNU General Public License for more details. | ||||||
|  |  | ||||||
|  |     You should have received a copy of the GNU General Public License along | ||||||
|  |     with this program; if not, write to the Free Software Foundation, Inc., | ||||||
|  |     51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. | ||||||
|  |  | ||||||
|  |     See the full license in the file "LICENSE" in the top level distribution directory | ||||||
|  | *************************************************************************************/ | ||||||
|  | /*  END LEGAL */ | ||||||
|  | #ifndef GRID_PREC_GCR_NON_HERM_H | ||||||
|  | #define GRID_PREC_GCR_NON_HERM_H | ||||||
|  |  | ||||||
|  | /////////////////////////////////////////////////////////////////////////////////////////////////////// | ||||||
|  | //VPGCR Abe and Zhang, 2005. | ||||||
|  | //INTERNATIONAL JOURNAL OF NUMERICAL ANALYSIS AND MODELING | ||||||
|  | //Computing and Information Volume 2, Number 2, Pages 147-161 | ||||||
|  | //NB. Likely not original reference since they are focussing on a preconditioner variant. | ||||||
|  | //    but VPGCR was nicely written up in their paper | ||||||
|  | /////////////////////////////////////////////////////////////////////////////////////////////////////// | ||||||
|  | NAMESPACE_BEGIN(Grid); | ||||||
|  |  | ||||||
|  | #define GCRLogLevel std::cout << GridLogMessage <<std::string(level,'\t')<< " Level "<<level<<" "  | ||||||
|  |  | ||||||
|  | template<class Field> | ||||||
|  | class PrecGeneralisedConjugateResidualNonHermitian : public LinearFunction<Field> { | ||||||
|  | public:                                                 | ||||||
|  |   using LinearFunction<Field>::operator(); | ||||||
|  |   RealD   Tolerance; | ||||||
|  |   Integer MaxIterations; | ||||||
|  |   int verbose; | ||||||
|  |   int mmax; | ||||||
|  |   int nstep; | ||||||
|  |   int steps; | ||||||
|  |   int level; | ||||||
|  |   GridStopWatch PrecTimer; | ||||||
|  |   GridStopWatch MatTimer; | ||||||
|  |   GridStopWatch LinalgTimer; | ||||||
|  |  | ||||||
|  |   LinearFunction<Field>     &Preconditioner; | ||||||
|  |   LinearOperatorBase<Field> &Linop; | ||||||
|  |  | ||||||
|  |   void Level(int lv) { level=lv; }; | ||||||
|  |  | ||||||
|  |   PrecGeneralisedConjugateResidualNonHermitian(RealD tol,Integer maxit,LinearOperatorBase<Field> &_Linop,LinearFunction<Field> &Prec,int _mmax,int _nstep) :  | ||||||
|  |     Tolerance(tol),  | ||||||
|  |     MaxIterations(maxit), | ||||||
|  |     Linop(_Linop), | ||||||
|  |     Preconditioner(Prec), | ||||||
|  |     mmax(_mmax), | ||||||
|  |     nstep(_nstep) | ||||||
|  |   {  | ||||||
|  |     level=1; | ||||||
|  |     verbose=1; | ||||||
|  |   }; | ||||||
|  |  | ||||||
|  |   void operator() (const Field &src, Field &psi){ | ||||||
|  |  | ||||||
|  |     psi=Zero(); | ||||||
|  |     RealD cp, ssq,rsq; | ||||||
|  |     ssq=norm2(src); | ||||||
|  |     rsq=Tolerance*Tolerance*ssq; | ||||||
|  |        | ||||||
|  |     Field r(src.Grid()); | ||||||
|  |  | ||||||
|  |     PrecTimer.Reset(); | ||||||
|  |     MatTimer.Reset(); | ||||||
|  |     LinalgTimer.Reset(); | ||||||
|  |  | ||||||
|  |     GridStopWatch SolverTimer; | ||||||
|  |     SolverTimer.Start(); | ||||||
|  |  | ||||||
|  |     steps=0; | ||||||
|  |     for(int k=0;k<MaxIterations;k++){ | ||||||
|  |  | ||||||
|  |       cp=GCRnStep(src,psi,rsq); | ||||||
|  |  | ||||||
|  |       GCRLogLevel <<"PGCR("<<mmax<<","<<nstep<<") "<< steps <<" steps cp = "<<cp<<" target "<<rsq <<std::endl; | ||||||
|  |  | ||||||
|  |       if(cp<rsq) { | ||||||
|  |  | ||||||
|  | 	SolverTimer.Stop(); | ||||||
|  |  | ||||||
|  | 	Linop.Op(psi,r); | ||||||
|  | 	axpy(r,-1.0,src,r); | ||||||
|  | 	RealD tr = norm2(r); | ||||||
|  | 	GCRLogLevel<<"PGCR: Converged on iteration " <<steps | ||||||
|  | 		 << " computed residual "<<sqrt(cp/ssq) | ||||||
|  | 		 << " true residual "    <<sqrt(tr/ssq) | ||||||
|  | 		 << " target "           <<Tolerance <<std::endl; | ||||||
|  |  | ||||||
|  | 	GCRLogLevel<<"PGCR Time elapsed: Total  "<< SolverTimer.Elapsed() <<std::endl; | ||||||
|  | 	return; | ||||||
|  |       } | ||||||
|  |  | ||||||
|  |     } | ||||||
|  |     GCRLogLevel<<"Variable Preconditioned GCR did not converge"<<std::endl; | ||||||
|  |     //    assert(0); | ||||||
|  |   } | ||||||
|  |  | ||||||
|  |   RealD GCRnStep(const Field &src, Field &psi,RealD rsq){ | ||||||
|  |  | ||||||
|  |     RealD cp; | ||||||
|  |     ComplexD a, b; | ||||||
|  |     //    ComplexD zAz; | ||||||
|  |     RealD zAAz; | ||||||
|  |     ComplexD rq; | ||||||
|  |  | ||||||
|  |     GridBase *grid = src.Grid(); | ||||||
|  |  | ||||||
|  |     Field r(grid); | ||||||
|  |     Field z(grid); | ||||||
|  |     Field tmp(grid); | ||||||
|  |     Field ttmp(grid); | ||||||
|  |     Field Az(grid); | ||||||
|  |  | ||||||
|  |     //////////////////////////////// | ||||||
|  |     // history for flexible orthog | ||||||
|  |     //////////////////////////////// | ||||||
|  |     std::vector<Field> q(mmax,grid); | ||||||
|  |     std::vector<Field> p(mmax,grid); | ||||||
|  |     std::vector<RealD> qq(mmax); | ||||||
|  |        | ||||||
|  |     GCRLogLevel<< "PGCR nStep("<<nstep<<")"<<std::endl; | ||||||
|  |  | ||||||
|  |     ////////////////////////////////// | ||||||
|  |     // initial guess x0 is taken as nonzero. | ||||||
|  |     // r0=src-A x0 = src | ||||||
|  |     ////////////////////////////////// | ||||||
|  |     MatTimer.Start(); | ||||||
|  |     Linop.Op(psi,Az); | ||||||
|  |     //    zAz = innerProduct(Az,psi); | ||||||
|  |     zAAz= norm2(Az); | ||||||
|  |     MatTimer.Stop(); | ||||||
|  |      | ||||||
|  |  | ||||||
|  |     LinalgTimer.Start(); | ||||||
|  |     r=src-Az; | ||||||
|  |     LinalgTimer.Stop(); | ||||||
|  |     GCRLogLevel<< "PGCR true residual r = src - A psi   "<<norm2(r) <<std::endl; | ||||||
|  |      | ||||||
|  |     ///////////////////// | ||||||
|  |     // p = Prec(r) | ||||||
|  |     ///////////////////// | ||||||
|  |  | ||||||
|  |     PrecTimer.Start(); | ||||||
|  |     Preconditioner(r,z); | ||||||
|  |     PrecTimer.Stop(); | ||||||
|  |  | ||||||
|  |     MatTimer.Start(); | ||||||
|  |     Linop.Op(z,Az); | ||||||
|  |     MatTimer.Stop(); | ||||||
|  |  | ||||||
|  |     LinalgTimer.Start(); | ||||||
|  |  | ||||||
|  |     //    zAz = innerProduct(Az,psi); | ||||||
|  |     zAAz= norm2(Az); | ||||||
|  |  | ||||||
|  |     //p[0],q[0],qq[0]  | ||||||
|  |     p[0]= z; | ||||||
|  |     q[0]= Az; | ||||||
|  |     qq[0]= zAAz; | ||||||
|  |      | ||||||
|  |     cp =norm2(r); | ||||||
|  |     LinalgTimer.Stop(); | ||||||
|  |  | ||||||
|  |     for(int k=0;k<nstep;k++){ | ||||||
|  |  | ||||||
|  |       steps++; | ||||||
|  |  | ||||||
|  |       int kp     = k+1; | ||||||
|  |       int peri_k = k %mmax; | ||||||
|  |       int peri_kp= kp%mmax; | ||||||
|  |  | ||||||
|  |       LinalgTimer.Start(); | ||||||
|  |       rq= innerProduct(q[peri_k],r); // what if rAr not real? | ||||||
|  |       a = rq/qq[peri_k]; | ||||||
|  |  | ||||||
|  |       axpy(psi,a,p[peri_k],psi);          | ||||||
|  |  | ||||||
|  |       cp = axpy_norm(r,-a,q[peri_k],r); | ||||||
|  |       LinalgTimer.Stop(); | ||||||
|  |  | ||||||
|  |       GCRLogLevel<< "PGCR step["<<steps<<"]  resid " << cp << " target " <<rsq<<std::endl;  | ||||||
|  |  | ||||||
|  |       if((k==nstep-1)||(cp<rsq)){ | ||||||
|  | 	return cp; | ||||||
|  |       } | ||||||
|  |  | ||||||
|  |  | ||||||
|  |       PrecTimer.Start(); | ||||||
|  |       Preconditioner(r,z);// solve Az = r | ||||||
|  |       PrecTimer.Stop(); | ||||||
|  |  | ||||||
|  |       MatTimer.Start(); | ||||||
|  |       Linop.Op(z,Az); | ||||||
|  |       MatTimer.Stop(); | ||||||
|  |       //      zAz = innerProduct(Az,psi); | ||||||
|  |       zAAz= norm2(Az); | ||||||
|  |  | ||||||
|  |       LinalgTimer.Start(); | ||||||
|  |  | ||||||
|  |       q[peri_kp]=Az; | ||||||
|  |       p[peri_kp]=z; | ||||||
|  |  | ||||||
|  |       int northog = ((kp)>(mmax-1))?(mmax-1):(kp);  // if more than mmax done, we orthog all mmax history. | ||||||
|  |       for(int back=0;back<northog;back++){ | ||||||
|  |  | ||||||
|  | 	int peri_back=(k-back)%mmax;   	  assert((k-back)>=0); | ||||||
|  |  | ||||||
|  | 	b=-real(innerProduct(q[peri_back],Az))/qq[peri_back]; | ||||||
|  | 	p[peri_kp]=p[peri_kp]+b*p[peri_back]; | ||||||
|  | 	q[peri_kp]=q[peri_kp]+b*q[peri_back]; | ||||||
|  |  | ||||||
|  |       } | ||||||
|  |       qq[peri_kp]=norm2(q[peri_kp]); // could use axpy_norm | ||||||
|  |       LinalgTimer.Stop(); | ||||||
|  |     } | ||||||
|  |     assert(0); // never reached | ||||||
|  |     return cp; | ||||||
|  |   } | ||||||
|  | }; | ||||||
|  | NAMESPACE_END(Grid); | ||||||
|  | #endif | ||||||
							
								
								
									
										371
									
								
								Grid/algorithms/iterative/QuasiMinimalResidual.h
									
									
									
									
									
										Normal file
									
								
							
							
						
						
									
										371
									
								
								Grid/algorithms/iterative/QuasiMinimalResidual.h
									
									
									
									
									
										Normal file
									
								
							| @@ -0,0 +1,371 @@ | |||||||
|  | /************************************************************************************* | ||||||
|  |  | ||||||
|  | Grid physics library, www.github.com/paboyle/Grid | ||||||
|  |  | ||||||
|  | Source file: ./lib/algorithmsf/iterative/QuasiMinimalResidual.h | ||||||
|  |  | ||||||
|  | Copyright (C) 2019 | ||||||
|  |  | ||||||
|  | Author: Peter Boyle <paboyle@ph.ed.ac.uk> | ||||||
|  |  | ||||||
|  | This program is free software; you can redistribute it and/or modify | ||||||
|  | it under the terms of the GNU General Public License as published by | ||||||
|  | the Free Software Foundation; either version 2 of the License, or | ||||||
|  | (at your option) any later version. | ||||||
|  |  | ||||||
|  | This program is distributed in the hope that it will be useful, | ||||||
|  | but WITHOUT ANY WARRANTY; without even the implied warranty of | ||||||
|  | MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the | ||||||
|  | GNU General Public License for more details. | ||||||
|  |  | ||||||
|  | You should have received a copy of the GNU General Public License along | ||||||
|  | with this program; if not, write to the Free Software Foundation, Inc., | ||||||
|  | 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. | ||||||
|  |  | ||||||
|  | See the full license in the file "LICENSE" in the top level distribution | ||||||
|  | directory | ||||||
|  | *************************************************************************************/ | ||||||
|  | /*  END LEGAL */ | ||||||
|  | #pragma once | ||||||
|  |  | ||||||
|  | NAMESPACE_BEGIN(Grid); | ||||||
|  |  | ||||||
|  | template<class Field>  | ||||||
|  | RealD innerG5ProductReal(Field &l, Field &r) | ||||||
|  | { | ||||||
|  |   Gamma G5(Gamma::Algebra::Gamma5); | ||||||
|  |   Field tmp(l.Grid()); | ||||||
|  |   //  tmp = G5*r; | ||||||
|  |   G5R5(tmp,r); | ||||||
|  |   ComplexD ip =innerProduct(l,tmp); | ||||||
|  |   std::cout << "innerProductRealG5R5 "<<ip<<std::endl; | ||||||
|  |   return ip.real(); | ||||||
|  | } | ||||||
|  |  | ||||||
|  | template<class Field> | ||||||
|  | class QuasiMinimalResidual : public OperatorFunction<Field> { | ||||||
|  |  public: | ||||||
|  |   using OperatorFunction<Field>::operator(); | ||||||
|  |  | ||||||
|  |   bool ErrorOnNoConverge;  | ||||||
|  |   RealD   Tolerance; | ||||||
|  |   Integer MaxIterations; | ||||||
|  |   Integer IterationCount; | ||||||
|  |  | ||||||
|  |   QuasiMinimalResidual(RealD   tol, | ||||||
|  | 		       Integer maxit, | ||||||
|  | 		       bool    err_on_no_conv = true) | ||||||
|  |       : Tolerance(tol) | ||||||
|  |       , MaxIterations(maxit) | ||||||
|  |       , ErrorOnNoConverge(err_on_no_conv)  | ||||||
|  |   {}; | ||||||
|  |  | ||||||
|  | #if 1 | ||||||
|  |   void operator()(LinearOperatorBase<Field> &LinOp, const Field &b, Field &x)  | ||||||
|  |   { | ||||||
|  |     RealD resid; | ||||||
|  |     IterationCount=0; | ||||||
|  |  | ||||||
|  |     RealD  rho, rho_1, xi, gamma, gamma_1, theta, theta_1; | ||||||
|  |     RealD  eta, delta, ep, beta;  | ||||||
|  |  | ||||||
|  |     GridBase *Grid = b.Grid(); | ||||||
|  |     Field r(Grid), d(Grid), s(Grid); | ||||||
|  |     Field v(Grid), w(Grid), y(Grid),  z(Grid); | ||||||
|  |     Field v_tld(Grid), w_tld(Grid), y_tld(Grid), z_tld(Grid); | ||||||
|  |     Field p(Grid), q(Grid), p_tld(Grid); | ||||||
|  |  | ||||||
|  |     Real normb = norm2(b); | ||||||
|  |  | ||||||
|  |     LinOp.Op(x,r); r = b - r; | ||||||
|  |  | ||||||
|  |     assert(normb> 0.0); | ||||||
|  |  | ||||||
|  |     resid = norm2(r)/normb; | ||||||
|  |     if (resid <= Tolerance) { | ||||||
|  |       return; | ||||||
|  |     } | ||||||
|  |  | ||||||
|  |     v_tld = r; | ||||||
|  |     y = v_tld; | ||||||
|  |     rho = norm2(y); | ||||||
|  |  | ||||||
|  |     // Take Gamma5 conjugate | ||||||
|  |     //    Gamma G5(Gamma::Algebra::Gamma5); | ||||||
|  |     //    G5R5(w_tld,r); | ||||||
|  |     //    w_tld = G5* v_tld; | ||||||
|  |     w_tld=v_tld; | ||||||
|  |     z = w_tld; | ||||||
|  |     xi = norm2(z); | ||||||
|  |  | ||||||
|  |     gamma = 1.0; | ||||||
|  |     eta   = -1.0; | ||||||
|  |     theta = 0.0; | ||||||
|  |  | ||||||
|  |     for (int i = 1; i <= MaxIterations; i++) { | ||||||
|  |  | ||||||
|  |       // Breakdown tests | ||||||
|  |       assert( rho != 0.0); | ||||||
|  |       assert( xi  != 0.0); | ||||||
|  |  | ||||||
|  |       v = (1. / rho) * v_tld; | ||||||
|  |       y = (1. / rho) * y; | ||||||
|  |  | ||||||
|  |       w = (1. / xi) * w_tld; | ||||||
|  |       z = (1. / xi) * z; | ||||||
|  |  | ||||||
|  |       ComplexD Zdelta = innerProduct(z, y); // Complex? | ||||||
|  |       std::cout << "Zdelta "<<Zdelta<<std::endl; | ||||||
|  |       delta = Zdelta.real(); | ||||||
|  |  | ||||||
|  |       y_tld = y;  | ||||||
|  |       z_tld = z; | ||||||
|  |  | ||||||
|  |       if (i > 1) { | ||||||
|  | 	p = y_tld - (xi  * delta / ep) * p; | ||||||
|  | 	q = z_tld - (rho * delta / ep) * q; | ||||||
|  |       } else { | ||||||
|  | 	p = y_tld; | ||||||
|  | 	q = z_tld; | ||||||
|  |       } | ||||||
|  |  | ||||||
|  |       LinOp.Op(p,p_tld);      //     p_tld = A * p; | ||||||
|  |       ComplexD Zep = innerProduct(q, p_tld); | ||||||
|  |       ep=Zep.real(); | ||||||
|  |       std::cout << "Zep "<<Zep <<std::endl; | ||||||
|  |       // Complex Audit | ||||||
|  |       assert(abs(ep)>0); | ||||||
|  |  | ||||||
|  |       beta = ep / delta; | ||||||
|  |       assert(abs(beta)>0); | ||||||
|  |  | ||||||
|  |       v_tld = p_tld - beta * v; | ||||||
|  |       y = v_tld; | ||||||
|  |  | ||||||
|  |       rho_1 = rho; | ||||||
|  |       rho   = norm2(y); | ||||||
|  |       LinOp.AdjOp(q,w_tld); | ||||||
|  |       w_tld = w_tld - beta * w; | ||||||
|  |       z = w_tld; | ||||||
|  |  | ||||||
|  |       xi = norm2(z); | ||||||
|  |  | ||||||
|  |       gamma_1 = gamma; | ||||||
|  |       theta_1 = theta; | ||||||
|  |  | ||||||
|  |       theta   = rho / (gamma_1 * beta); | ||||||
|  |       gamma   = 1.0 / sqrt(1.0 + theta * theta); | ||||||
|  |       std::cout << "theta "<<theta<<std::endl; | ||||||
|  |       std::cout << "gamma "<<gamma<<std::endl; | ||||||
|  |  | ||||||
|  |       assert(abs(gamma)> 0.0); | ||||||
|  |  | ||||||
|  |       eta = -eta * rho_1 * gamma* gamma / (beta * gamma_1 * gamma_1); | ||||||
|  |  | ||||||
|  |       if (i > 1) { | ||||||
|  | 	d = eta * p + (theta_1 * theta_1 * gamma * gamma) * d; | ||||||
|  | 	s = eta * p_tld + (theta_1 * theta_1 * gamma * gamma) * s; | ||||||
|  |       } else { | ||||||
|  | 	d = eta * p; | ||||||
|  | 	s = eta * p_tld; | ||||||
|  |       } | ||||||
|  |  | ||||||
|  |       x =x+d;                            // update approximation vector | ||||||
|  |       r =r-s;                            // compute residual | ||||||
|  |  | ||||||
|  |       if ((resid = norm2(r) / normb) <= Tolerance) { | ||||||
|  | 	return; | ||||||
|  |       } | ||||||
|  |       std::cout << "Iteration "<<i<<" resid " << resid<<std::endl; | ||||||
|  |     } | ||||||
|  |     assert(0); | ||||||
|  |     return;                            // no convergence | ||||||
|  |   } | ||||||
|  | #else | ||||||
|  |   // QMRg5 SMP thesis | ||||||
|  |   void operator()(LinearOperatorBase<Field> &LinOp, const Field &b, Field &x)  | ||||||
|  |   { | ||||||
|  |     // Real scalars | ||||||
|  |     GridBase *grid = b.Grid(); | ||||||
|  |  | ||||||
|  |     Field    r(grid); | ||||||
|  |     Field    p_m(grid), p_m_minus_1(grid), p_m_minus_2(grid); | ||||||
|  |     Field    v_m(grid), v_m_minus_1(grid), v_m_plus_1(grid); | ||||||
|  |     Field    tmp(grid); | ||||||
|  |  | ||||||
|  |     RealD    w; | ||||||
|  |     RealD    z1, z2; | ||||||
|  |     RealD    delta_m, delta_m_minus_1; | ||||||
|  |     RealD    c_m_plus_1, c_m, c_m_minus_1; | ||||||
|  |     RealD    s_m_plus_1, s_m, s_m_minus_1; | ||||||
|  |     RealD    alpha, beta, gamma, epsilon; | ||||||
|  |     RealD    mu, nu, rho, theta, xi, chi; | ||||||
|  |     RealD    mod2r, mod2b; | ||||||
|  |     RealD    tau2, target2; | ||||||
|  |  | ||||||
|  |     mod2b=norm2(b); | ||||||
|  |  | ||||||
|  |     ///////////////////////// | ||||||
|  |     // Initial residual | ||||||
|  |     ///////////////////////// | ||||||
|  |     LinOp.Op(x,tmp); | ||||||
|  |     r = b - tmp; | ||||||
|  |  | ||||||
|  |     ///////////////////////// | ||||||
|  |     // \mu = \rho = |r_0| | ||||||
|  |     ///////////////////////// | ||||||
|  |     mod2r = norm2(r); | ||||||
|  |     rho = sqrt( mod2r); | ||||||
|  |     mu=rho; | ||||||
|  |      | ||||||
|  |     std::cout << "QuasiMinimalResidual rho "<< rho<<std::endl; | ||||||
|  |     ///////////////////////// | ||||||
|  |     // Zero negative history | ||||||
|  |     ///////////////////////// | ||||||
|  |     v_m_plus_1  = Zero(); | ||||||
|  |     v_m_minus_1 = Zero(); | ||||||
|  |     p_m_minus_1 = Zero(); | ||||||
|  |     p_m_minus_2 = Zero(); | ||||||
|  |  | ||||||
|  |     // v0 | ||||||
|  |     v_m = (1.0/rho)*r; | ||||||
|  |  | ||||||
|  |     ///////////////////////// | ||||||
|  |     // Initial coeffs | ||||||
|  |     ///////////////////////// | ||||||
|  |     delta_m_minus_1 = 1.0; | ||||||
|  |     c_m_minus_1     = 1.0; | ||||||
|  |     c_m             = 1.0; | ||||||
|  |     s_m_minus_1     = 0.0; | ||||||
|  |     s_m             = 0.0; | ||||||
|  |  | ||||||
|  |     ///////////////////////// | ||||||
|  |     // Set up convergence check | ||||||
|  |     ///////////////////////// | ||||||
|  |     tau2    = mod2r; | ||||||
|  |     target2 = mod2b * Tolerance*Tolerance; | ||||||
|  |   | ||||||
|  |     for(int iter = 0 ; iter < MaxIterations; iter++){ | ||||||
|  |  | ||||||
|  |       ///////////////////////// | ||||||
|  |       // \delta_m = (v_m, \gamma_5 v_m)  | ||||||
|  |       ///////////////////////// | ||||||
|  |       delta_m = innerG5ProductReal(v_m,v_m); | ||||||
|  |       std::cout << "QuasiMinimalResidual delta_m "<< delta_m<<std::endl; | ||||||
|  |  | ||||||
|  |       ///////////////////////// | ||||||
|  |       // tmp = A v_m | ||||||
|  |       ///////////////////////// | ||||||
|  |       LinOp.Op(v_m,tmp); | ||||||
|  |  | ||||||
|  |       ///////////////////////// | ||||||
|  |       // \alpha = (v_m, \gamma_5 temp) / \delta_m  | ||||||
|  |       ///////////////////////// | ||||||
|  |       alpha = innerG5ProductReal(v_m,tmp); | ||||||
|  |       alpha = alpha/delta_m ; | ||||||
|  |       std::cout << "QuasiMinimalResidual alpha "<< alpha<<std::endl; | ||||||
|  |  | ||||||
|  |       ///////////////////////// | ||||||
|  |       // \beta = \rho \delta_m / \delta_{m-1} | ||||||
|  |       ///////////////////////// | ||||||
|  |       beta = rho * delta_m / delta_m_minus_1; | ||||||
|  |       std::cout << "QuasiMinimalResidual beta "<< beta<<std::endl; | ||||||
|  |  | ||||||
|  |       ///////////////////////// | ||||||
|  |       // \tilde{v}_{m+1} = temp - \alpha v_m - \beta v_{m-1} | ||||||
|  |       ///////////////////////// | ||||||
|  |       v_m_plus_1 = tmp - alpha*v_m - beta*v_m_minus_1; | ||||||
|  |  | ||||||
|  |       /////////////////////////////// | ||||||
|  |       // \rho = || \tilde{v}_{m+1} || | ||||||
|  |       /////////////////////////////// | ||||||
|  |       rho = sqrt( norm2(v_m_plus_1) ); | ||||||
|  |       std::cout << "QuasiMinimalResidual rho "<< rho<<std::endl; | ||||||
|  |  | ||||||
|  |       /////////////////////////////// | ||||||
|  |       //      v_{m+1} = \tilde{v}_{m+1} | ||||||
|  |       /////////////////////////////// | ||||||
|  |       v_m_plus_1 = (1.0 / rho) * v_m_plus_1; | ||||||
|  |  | ||||||
|  |       //////////////////////////////// | ||||||
|  |       // QMR recurrence coefficients. | ||||||
|  |       //////////////////////////////// | ||||||
|  |       theta      = s_m_minus_1 * beta; | ||||||
|  |       gamma      = c_m_minus_1 * beta; | ||||||
|  |       epsilon    =  c_m * gamma + s_m * alpha; | ||||||
|  |       xi         = -s_m * gamma + c_m * alpha; | ||||||
|  |       nu         = sqrt( xi*xi + rho*rho ); | ||||||
|  |       c_m_plus_1 = fabs(xi) / nu; | ||||||
|  |       if ( xi == 0.0 ) { | ||||||
|  | 	s_m_plus_1 = 1.0; | ||||||
|  |       } else { | ||||||
|  | 	s_m_plus_1 = c_m_plus_1 * rho / xi; | ||||||
|  |       } | ||||||
|  |       chi = c_m_plus_1 * xi + s_m_plus_1 * rho; | ||||||
|  |  | ||||||
|  |       std::cout << "QuasiMinimalResidual coeffs "<< theta <<" "<<gamma<<" "<< epsilon<<" "<< xi<<" "<< nu<<std::endl; | ||||||
|  |       std::cout << "QuasiMinimalResidual coeffs "<< chi   <<std::endl; | ||||||
|  |  | ||||||
|  |       //////////////////////////////// | ||||||
|  |       //p_m=(v_m - \epsilon p_{m-1} - \theta p_{m-2}) / \chi | ||||||
|  |       //////////////////////////////// | ||||||
|  |       p_m = (1.0/chi) * v_m - (epsilon/chi) * p_m_minus_1 - (theta/chi) * p_m_minus_2; | ||||||
|  |  | ||||||
|  |       //////////////////////////////////////////////////////////////// | ||||||
|  |       //      \psi = \psi + c_{m+1} \mu p_m	 | ||||||
|  |       //////////////////////////////////////////////////////////////// | ||||||
|  |       x = x + ( c_m_plus_1 * mu ) * p_m; | ||||||
|  |  | ||||||
|  |       //////////////////////////////////////// | ||||||
|  |       // | ||||||
|  |       //////////////////////////////////////// | ||||||
|  |       mu              = -s_m_plus_1 * mu; | ||||||
|  |       delta_m_minus_1 = delta_m; | ||||||
|  |       c_m_minus_1     = c_m; | ||||||
|  |       c_m             = c_m_plus_1; | ||||||
|  |       s_m_minus_1     = s_m; | ||||||
|  |       s_m             = s_m_plus_1; | ||||||
|  |  | ||||||
|  |       //////////////////////////////////// | ||||||
|  |       // Could use pointer swizzle games. | ||||||
|  |       //////////////////////////////////// | ||||||
|  |       v_m_minus_1 = v_m; | ||||||
|  |       v_m         = v_m_plus_1; | ||||||
|  |       p_m_minus_2 = p_m_minus_1; | ||||||
|  |       p_m_minus_1 = p_m; | ||||||
|  |  | ||||||
|  |  | ||||||
|  |       ///////////////////////////////////// | ||||||
|  |       // Convergence checks | ||||||
|  |       ///////////////////////////////////// | ||||||
|  |       z1 = RealD(iter+1.0); | ||||||
|  |       z2 = z1 + 1.0; | ||||||
|  |       tau2 = tau2 *( z2 / z1 ) * s_m * s_m; | ||||||
|  |       std::cout << " QuasiMinimumResidual iteration "<< iter<<std::endl; | ||||||
|  |       std::cout << " QuasiMinimumResidual tau bound "<< tau2<<std::endl; | ||||||
|  |  | ||||||
|  |       // Compute true residual | ||||||
|  |       mod2r = tau2; | ||||||
|  |       if ( 1 || (tau2 < (100.0 * target2)) ) { | ||||||
|  | 	LinOp.Op(x,tmp); | ||||||
|  | 	r = b - tmp; | ||||||
|  | 	mod2r = norm2(r); | ||||||
|  | 	std::cout << " QuasiMinimumResidual true residual is "<< mod2r<<std::endl; | ||||||
|  |       } | ||||||
|  |  | ||||||
|  |  | ||||||
|  |       if ( mod2r < target2 ) {  | ||||||
|  |  | ||||||
|  | 	std::cout << " QuasiMinimumResidual has converged"<<std::endl; | ||||||
|  | 	return; | ||||||
|  |  | ||||||
|  |       } | ||||||
|  |  | ||||||
|  |     } | ||||||
|  |  | ||||||
|  |  | ||||||
|  |   } | ||||||
|  | #endif | ||||||
|  | }; | ||||||
|  |  | ||||||
|  | NAMESPACE_END(Grid); | ||||||
							
								
								
									
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								Grid/algorithms/iterative/SchurRedBlack.h
									
									
									
									
									
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										651
									
								
								Grid/algorithms/iterative/SchurRedBlack.h
									
									
									
									
									
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							| @@ -0,0 +1,651 @@ | |||||||
|  |     /************************************************************************************* | ||||||
|  |  | ||||||
|  |     Grid physics library, www.github.com/paboyle/Grid  | ||||||
|  |  | ||||||
|  |     Source file: ./lib/algorithms/iterative/SchurRedBlack.h | ||||||
|  |  | ||||||
|  |     Copyright (C) 2015 | ||||||
|  |  | ||||||
|  | Author: Peter Boyle <paboyle@ph.ed.ac.uk> | ||||||
|  |  | ||||||
|  |     This program is free software; you can redistribute it and/or modify | ||||||
|  |     it under the terms of the GNU General Public License as published by | ||||||
|  |     the Free Software Foundation; either version 2 of the License, or | ||||||
|  |     (at your option) any later version. | ||||||
|  |  | ||||||
|  |     This program is distributed in the hope that it will be useful, | ||||||
|  |     but WITHOUT ANY WARRANTY; without even the implied warranty of | ||||||
|  |     MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the | ||||||
|  |     GNU General Public License for more details. | ||||||
|  |  | ||||||
|  |     You should have received a copy of the GNU General Public License along | ||||||
|  |     with this program; if not, write to the Free Software Foundation, Inc., | ||||||
|  |     51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. | ||||||
|  |  | ||||||
|  |     See the full license in the file "LICENSE" in the top level distribution directory | ||||||
|  |     *************************************************************************************/ | ||||||
|  |     /*  END LEGAL */ | ||||||
|  | #ifndef GRID_SCHUR_RED_BLACK_H | ||||||
|  | #define GRID_SCHUR_RED_BLACK_H | ||||||
|  |  | ||||||
|  |  | ||||||
|  |   /* | ||||||
|  |    * Red black Schur decomposition | ||||||
|  |    * | ||||||
|  |    *  M = (Mee Meo) =  (1             0 )   (Mee   0               )  (1 Mee^{-1} Meo) | ||||||
|  |    *      (Moe Moo)    (Moe Mee^-1    1 )   (0   Moo-Moe Mee^-1 Meo)  (0   1         ) | ||||||
|  |    *                =         L                     D                     U | ||||||
|  |    * | ||||||
|  |    * L^-1 = (1              0 ) | ||||||
|  |    *        (-MoeMee^{-1}   1 )    | ||||||
|  |    * L^{dag} = ( 1       Mee^{-dag} Moe^{dag} ) | ||||||
|  |    *           ( 0       1                    ) | ||||||
|  |    * L^{-d}  = ( 1      -Mee^{-dag} Moe^{dag} ) | ||||||
|  |    *           ( 0       1                    ) | ||||||
|  |    * | ||||||
|  |    * U^-1 = (1   -Mee^{-1} Meo) | ||||||
|  |    *        (0    1           ) | ||||||
|  |    * U^{dag} = ( 1                 0) | ||||||
|  |    *           (Meo^dag Mee^{-dag} 1) | ||||||
|  |    * U^{-dag} = (  1                 0) | ||||||
|  |    *            (-Meo^dag Mee^{-dag} 1) | ||||||
|  |    *********************** | ||||||
|  |    *     M psi = eta | ||||||
|  |    *********************** | ||||||
|  |    *Odd | ||||||
|  |    * i)                 D_oo psi_o =  L^{-1}  eta_o | ||||||
|  |    *                        eta_o' = (D_oo)^dag (eta_o - Moe Mee^{-1} eta_e) | ||||||
|  |    * | ||||||
|  |    * Wilson: | ||||||
|  |    *      (D_oo)^{\dag} D_oo psi_o = (D_oo)^dag L^{-1}  eta_o | ||||||
|  |    * Stag: | ||||||
|  |    *      D_oo psi_o = L^{-1}  eta =    (eta_o - Moe Mee^{-1} eta_e) | ||||||
|  |    * | ||||||
|  |    * L^-1 eta_o= (1              0 ) (e | ||||||
|  |    *             (-MoeMee^{-1}   1 )    | ||||||
|  |    * | ||||||
|  |    *Even | ||||||
|  |    * ii)  Mee psi_e + Meo psi_o = src_e | ||||||
|  |    * | ||||||
|  |    *   => sol_e = M_ee^-1 * ( src_e - Meo sol_o )... | ||||||
|  |    * | ||||||
|  |    *  | ||||||
|  |    * TODO: Other options: | ||||||
|  |    *  | ||||||
|  |    * a) change checkerboards for Schur e<->o | ||||||
|  |    * | ||||||
|  |    * Left precon by Moo^-1 | ||||||
|  |    * b) Doo^{dag} M_oo^-dag Moo^-1 Doo psi_0 =  (D_oo)^dag M_oo^-dag Moo^-1 L^{-1}  eta_o | ||||||
|  |    *                              eta_o'     = (D_oo)^dag  M_oo^-dag Moo^-1 (eta_o - Moe Mee^{-1} eta_e) | ||||||
|  |    * | ||||||
|  |    * Right precon by Moo^-1 | ||||||
|  |    * c) M_oo^-dag Doo^{dag} Doo Moo^-1 phi_0 = M_oo^-dag (D_oo)^dag L^{-1}  eta_o | ||||||
|  |    *                              eta_o'     = M_oo^-dag (D_oo)^dag (eta_o - Moe Mee^{-1} eta_e) | ||||||
|  |    *                              psi_o = M_oo^-1 phi_o | ||||||
|  |    * TODO: Deflation  | ||||||
|  |    */ | ||||||
|  | namespace Grid { | ||||||
|  |  | ||||||
|  |   /////////////////////////////////////////////////////////////////////////////////////////////////////// | ||||||
|  |   // Use base class to share code | ||||||
|  |   /////////////////////////////////////////////////////////////////////////////////////////////////////// | ||||||
|  |   /////////////////////////////////////////////////////////////////////////////////////////////////////// | ||||||
|  |   // Take a matrix and form a Red Black solver calling a Herm solver | ||||||
|  |   // Use of RB info prevents making SchurRedBlackSolve conform to standard interface | ||||||
|  |   /////////////////////////////////////////////////////////////////////////////////////////////////////// | ||||||
|  |   template<class Field> class SchurRedBlackBase { | ||||||
|  |   protected: | ||||||
|  |     typedef CheckerBoardedSparseMatrixBase<Field> Matrix; | ||||||
|  |     OperatorFunction<Field> & _HermitianRBSolver; | ||||||
|  |     int CBfactorise; | ||||||
|  |     bool subGuess; | ||||||
|  |     bool useSolnAsInitGuess; // if true user-supplied solution vector is used as initial guess for solver | ||||||
|  |   public: | ||||||
|  |  | ||||||
|  |     SchurRedBlackBase(OperatorFunction<Field> &HermitianRBSolver, const bool initSubGuess = false, | ||||||
|  |         const bool _solnAsInitGuess = false)  : | ||||||
|  |     _HermitianRBSolver(HermitianRBSolver), | ||||||
|  |     useSolnAsInitGuess(_solnAsInitGuess) | ||||||
|  |     {  | ||||||
|  |       CBfactorise = 0; | ||||||
|  |       subtractGuess(initSubGuess); | ||||||
|  |     }; | ||||||
|  |     void subtractGuess(const bool initSubGuess) | ||||||
|  |     { | ||||||
|  |       subGuess = initSubGuess; | ||||||
|  |     } | ||||||
|  |     bool isSubtractGuess(void) | ||||||
|  |     { | ||||||
|  |       return subGuess; | ||||||
|  |     } | ||||||
|  |  | ||||||
|  |     ///////////////////////////////////////////////////////////// | ||||||
|  |     // Shared code | ||||||
|  |     ///////////////////////////////////////////////////////////// | ||||||
|  |     void operator() (Matrix & _Matrix,const Field &in, Field &out){ | ||||||
|  |       ZeroGuesser<Field> guess; | ||||||
|  |       (*this)(_Matrix,in,out,guess); | ||||||
|  |     } | ||||||
|  |     void operator()(Matrix &_Matrix, const std::vector<Field> &in, std::vector<Field> &out)  | ||||||
|  |     { | ||||||
|  |       ZeroGuesser<Field> guess; | ||||||
|  |       (*this)(_Matrix,in,out,guess); | ||||||
|  |     } | ||||||
|  |  | ||||||
|  |     void RedBlackSource(Matrix &_Matrix, const std::vector<Field> &in, std::vector<Field> &src_o)  | ||||||
|  |     { | ||||||
|  |       GridBase *grid = _Matrix.RedBlackGrid(); | ||||||
|  |       Field tmp(grid); | ||||||
|  |       int nblock = in.size(); | ||||||
|  |       for(int b=0;b<nblock;b++){ | ||||||
|  | 	RedBlackSource(_Matrix,in[b],tmp,src_o[b]); | ||||||
|  |       } | ||||||
|  |     } | ||||||
|  |     // James can write his own deflated guesser | ||||||
|  |     // with optimised code for the inner products | ||||||
|  |     //    RedBlackSolveSplitGrid(); | ||||||
|  |     //    RedBlackSolve(_Matrix,src_o,sol_o);  | ||||||
|  |  | ||||||
|  |     void RedBlackSolution(Matrix &_Matrix, const std::vector<Field> &in, const std::vector<Field> &sol_o, std::vector<Field> &out) | ||||||
|  |     { | ||||||
|  |       GridBase *grid = _Matrix.RedBlackGrid(); | ||||||
|  |       Field tmp(grid); | ||||||
|  |       int nblock = in.size(); | ||||||
|  |       for(int b=0;b<nblock;b++) { | ||||||
|  | 	pickCheckerboard(Even,tmp,in[b]); | ||||||
|  | 	RedBlackSolution(_Matrix,sol_o[b],tmp,out[b]); | ||||||
|  |       } | ||||||
|  |     } | ||||||
|  |  | ||||||
|  |     template<class Guesser> | ||||||
|  |     void operator()(Matrix &_Matrix, const std::vector<Field> &in, std::vector<Field> &out,Guesser &guess)  | ||||||
|  |     { | ||||||
|  |       GridBase *grid = _Matrix.RedBlackGrid(); | ||||||
|  |       GridBase *fgrid= _Matrix.Grid(); | ||||||
|  |       int nblock = in.size(); | ||||||
|  |  | ||||||
|  |       std::vector<Field> src_o(nblock,grid); | ||||||
|  |       std::vector<Field> sol_o(nblock,grid); | ||||||
|  |        | ||||||
|  |       std::vector<Field> guess_save; | ||||||
|  |  | ||||||
|  |       Field resid(fgrid); | ||||||
|  |       Field tmp(grid); | ||||||
|  |  | ||||||
|  |       //////////////////////////////////////////////// | ||||||
|  |       // Prepare RedBlack source | ||||||
|  |       //////////////////////////////////////////////// | ||||||
|  |       RedBlackSource(_Matrix,in,src_o); | ||||||
|  | 	//      for(int b=0;b<nblock;b++){ | ||||||
|  | 	//	RedBlackSource(_Matrix,in[b],tmp,src_o[b]); | ||||||
|  | 	//      } | ||||||
|  |        | ||||||
|  |       //////////////////////////////////////////////// | ||||||
|  |       // Make the guesses | ||||||
|  |       //////////////////////////////////////////////// | ||||||
|  |       if ( subGuess ) guess_save.resize(nblock,grid); | ||||||
|  |  | ||||||
|  |        | ||||||
|  |       if(useSolnAsInitGuess) { | ||||||
|  |         for(int b=0;b<nblock;b++){ | ||||||
|  |           pickCheckerboard(Odd, sol_o[b], out[b]); | ||||||
|  |         } | ||||||
|  |       } else { | ||||||
|  |         guess(src_o, sol_o);  | ||||||
|  |       } | ||||||
|  |  | ||||||
|  | 	    if ( subGuess ) {  | ||||||
|  |         for(int b=0;b<nblock;b++){ | ||||||
|  |           guess_save[b] = sol_o[b]; | ||||||
|  |         } | ||||||
|  |       } | ||||||
|  |       ////////////////////////////////////////////////////////////// | ||||||
|  |       // Call the block solver | ||||||
|  |       ////////////////////////////////////////////////////////////// | ||||||
|  |       std::cout<<GridLogMessage << "SchurRedBlackBase calling the solver for "<<nblock<<" RHS" <<std::endl; | ||||||
|  |       RedBlackSolve(_Matrix,src_o,sol_o); | ||||||
|  |  | ||||||
|  |       //////////////////////////////////////////////// | ||||||
|  |       // A2A boolean behavioural control & reconstruct other checkerboard | ||||||
|  |       //////////////////////////////////////////////// | ||||||
|  |       for(int b=0;b<nblock;b++) { | ||||||
|  |  | ||||||
|  | 	if (subGuess)   sol_o[b] = sol_o[b] - guess_save[b]; | ||||||
|  |  | ||||||
|  | 	///////// Needs even source ////////////// | ||||||
|  | 	pickCheckerboard(Even,tmp,in[b]); | ||||||
|  | 	RedBlackSolution(_Matrix,sol_o[b],tmp,out[b]); | ||||||
|  |  | ||||||
|  | 	///////////////////////////////////////////////// | ||||||
|  | 	// Check unprec residual if possible | ||||||
|  | 	///////////////////////////////////////////////// | ||||||
|  | 	if ( ! subGuess ) { | ||||||
|  | 	  _Matrix.M(out[b],resid);  | ||||||
|  | 	  resid = resid-in[b]; | ||||||
|  | 	  RealD ns = norm2(in[b]); | ||||||
|  | 	  RealD nr = norm2(resid); | ||||||
|  | 	 | ||||||
|  | 	  std::cout<<GridLogMessage<< "SchurRedBlackBase solver true unprec resid["<<b<<"] "<<std::sqrt(nr/ns) << std::endl; | ||||||
|  | 	} else { | ||||||
|  | 	  std::cout<<GridLogMessage<< "SchurRedBlackBase Guess subtracted after solve["<<b<<"] " << std::endl; | ||||||
|  | 	} | ||||||
|  |  | ||||||
|  |       } | ||||||
|  |     } | ||||||
|  |     template<class Guesser> | ||||||
|  |     void operator() (Matrix & _Matrix,const Field &in, Field &out,Guesser &guess){ | ||||||
|  |  | ||||||
|  |       // FIXME CGdiagonalMee not implemented virtual function | ||||||
|  |       // FIXME use CBfactorise to control schur decomp | ||||||
|  |       GridBase *grid = _Matrix.RedBlackGrid(); | ||||||
|  |       GridBase *fgrid= _Matrix.Grid(); | ||||||
|  |  | ||||||
|  |       Field resid(fgrid); | ||||||
|  |       Field src_o(grid); | ||||||
|  |       Field src_e(grid); | ||||||
|  |       Field sol_o(grid); | ||||||
|  |  | ||||||
|  |       //////////////////////////////////////////////// | ||||||
|  |       // RedBlack source | ||||||
|  |       //////////////////////////////////////////////// | ||||||
|  |       RedBlackSource(_Matrix,in,src_e,src_o); | ||||||
|  |  | ||||||
|  |       //////////////////////////////// | ||||||
|  |       // Construct the guess | ||||||
|  |       //////////////////////////////// | ||||||
|  |       if(useSolnAsInitGuess) { | ||||||
|  |         pickCheckerboard(Odd, sol_o, out); | ||||||
|  |       } else { | ||||||
|  |         guess(src_o,sol_o); | ||||||
|  |       } | ||||||
|  |  | ||||||
|  |       Field  guess_save(grid); | ||||||
|  |       guess_save = sol_o; | ||||||
|  |  | ||||||
|  |       ////////////////////////////////////////////////////////////// | ||||||
|  |       // Call the red-black solver | ||||||
|  |       ////////////////////////////////////////////////////////////// | ||||||
|  |       RedBlackSolve(_Matrix,src_o,sol_o); | ||||||
|  |  | ||||||
|  |       //////////////////////////////////////////////// | ||||||
|  |       // Fionn A2A boolean behavioural control | ||||||
|  |       //////////////////////////////////////////////// | ||||||
|  |       if (subGuess)      sol_o= sol_o-guess_save; | ||||||
|  |  | ||||||
|  |       /////////////////////////////////////////////////// | ||||||
|  |       // RedBlack solution needs the even source | ||||||
|  |       /////////////////////////////////////////////////// | ||||||
|  |       RedBlackSolution(_Matrix,sol_o,src_e,out); | ||||||
|  |  | ||||||
|  |       // Verify the unprec residual | ||||||
|  |       if ( ! subGuess ) { | ||||||
|  |         _Matrix.M(out,resid);  | ||||||
|  |         resid = resid-in; | ||||||
|  |         RealD ns = norm2(in); | ||||||
|  |         RealD nr = norm2(resid); | ||||||
|  |  | ||||||
|  |         std::cout<<GridLogMessage << "SchurRedBlackBase solver true unprec resid "<< std::sqrt(nr/ns) << std::endl; | ||||||
|  |       } else { | ||||||
|  |         std::cout << GridLogMessage << "SchurRedBlackBase Guess subtracted after solve." << std::endl; | ||||||
|  |       } | ||||||
|  |     }      | ||||||
|  |      | ||||||
|  |     ///////////////////////////////////////////////////////////// | ||||||
|  |     // Override in derived.  | ||||||
|  |     ///////////////////////////////////////////////////////////// | ||||||
|  |     virtual void RedBlackSource  (Matrix & _Matrix,const Field &src, Field &src_e,Field &src_o)                =0; | ||||||
|  |     virtual void RedBlackSolution(Matrix & _Matrix,const Field &sol_o, const Field &src_e,Field &sol)          =0; | ||||||
|  |     virtual void RedBlackSolve   (Matrix & _Matrix,const Field &src_o, Field &sol_o)                           =0; | ||||||
|  |     virtual void RedBlackSolve   (Matrix & _Matrix,const std::vector<Field> &src_o,  std::vector<Field> &sol_o)=0; | ||||||
|  |  | ||||||
|  |   }; | ||||||
|  |  | ||||||
|  |   template<class Field> class SchurRedBlackStaggeredSolve : public SchurRedBlackBase<Field> { | ||||||
|  |   public: | ||||||
|  |     typedef CheckerBoardedSparseMatrixBase<Field> Matrix; | ||||||
|  |  | ||||||
|  |     SchurRedBlackStaggeredSolve(OperatorFunction<Field> &HermitianRBSolver, const bool initSubGuess = false, | ||||||
|  |         const bool _solnAsInitGuess = false)  | ||||||
|  |       :    SchurRedBlackBase<Field> (HermitianRBSolver,initSubGuess,_solnAsInitGuess)  | ||||||
|  |     { | ||||||
|  |     } | ||||||
|  |  | ||||||
|  |     ////////////////////////////////////////////////////// | ||||||
|  |     // Override RedBlack specialisation | ||||||
|  |     ////////////////////////////////////////////////////// | ||||||
|  |     virtual void RedBlackSource(Matrix & _Matrix,const Field &src, Field &src_e,Field &src_o) | ||||||
|  |     { | ||||||
|  |       GridBase *grid = _Matrix.RedBlackGrid(); | ||||||
|  |       GridBase *fgrid= _Matrix.Grid(); | ||||||
|  |  | ||||||
|  |       Field   tmp(grid); | ||||||
|  |       Field  Mtmp(grid); | ||||||
|  |  | ||||||
|  |       pickCheckerboard(Even,src_e,src); | ||||||
|  |       pickCheckerboard(Odd ,src_o,src); | ||||||
|  |  | ||||||
|  |       ///////////////////////////////////////////////////// | ||||||
|  |       // src_o = (source_o - Moe MeeInv source_e) | ||||||
|  |       ///////////////////////////////////////////////////// | ||||||
|  |       _Matrix.MooeeInv(src_e,tmp);     assert(  tmp.Checkerboard() ==Even); | ||||||
|  |       _Matrix.Meooe   (tmp,Mtmp);      assert( Mtmp.Checkerboard() ==Odd);      | ||||||
|  |       tmp=src_o-Mtmp;                  assert(  tmp.Checkerboard() ==Odd);      | ||||||
|  |  | ||||||
|  |       _Matrix.Mooee(tmp,src_o); // Extra factor of "m" in source from dumb choice of matrix norm. | ||||||
|  |     } | ||||||
|  |     virtual void RedBlackSolution(Matrix & _Matrix,const Field &sol_o, const Field &src_e_c,Field &sol) | ||||||
|  |     { | ||||||
|  |       GridBase *grid = _Matrix.RedBlackGrid(); | ||||||
|  |       GridBase *fgrid= _Matrix.Grid(); | ||||||
|  |  | ||||||
|  |       Field   tmp(grid); | ||||||
|  |       Field   sol_e(grid); | ||||||
|  |       Field   src_e(grid); | ||||||
|  |  | ||||||
|  |       src_e = src_e_c; // Const correctness | ||||||
|  |  | ||||||
|  |       /////////////////////////////////////////////////// | ||||||
|  |       // sol_e = M_ee^-1 * ( src_e - Meo sol_o )... | ||||||
|  |       /////////////////////////////////////////////////// | ||||||
|  |       _Matrix.Meooe(sol_o,tmp);        assert(  tmp.Checkerboard()   ==Even); | ||||||
|  |       src_e = src_e-tmp;               assert(  src_e.Checkerboard() ==Even); | ||||||
|  |       _Matrix.MooeeInv(src_e,sol_e);   assert(  sol_e.Checkerboard() ==Even); | ||||||
|  |       | ||||||
|  |       setCheckerboard(sol,sol_e); assert(  sol_e.Checkerboard() ==Even); | ||||||
|  |       setCheckerboard(sol,sol_o); assert(  sol_o.Checkerboard() ==Odd ); | ||||||
|  |     } | ||||||
|  |     virtual void RedBlackSolve   (Matrix & _Matrix,const Field &src_o, Field &sol_o) | ||||||
|  |     { | ||||||
|  |       SchurStaggeredOperator<Matrix,Field> _HermOpEO(_Matrix); | ||||||
|  |       this->_HermitianRBSolver(_HermOpEO,src_o,sol_o);  assert(sol_o.Checkerboard()==Odd); | ||||||
|  |     }; | ||||||
|  |     virtual void RedBlackSolve   (Matrix & _Matrix,const std::vector<Field> &src_o,  std::vector<Field> &sol_o) | ||||||
|  |     { | ||||||
|  |       SchurStaggeredOperator<Matrix,Field> _HermOpEO(_Matrix); | ||||||
|  |       this->_HermitianRBSolver(_HermOpEO,src_o,sol_o);  | ||||||
|  |     } | ||||||
|  |   }; | ||||||
|  |   template<class Field> using SchurRedBlackStagSolve = SchurRedBlackStaggeredSolve<Field>; | ||||||
|  |  | ||||||
|  |   /////////////////////////////////////////////////////////////////////////////////////////////////////// | ||||||
|  |   // Site diagonal has Mooee on it. | ||||||
|  |   /////////////////////////////////////////////////////////////////////////////////////////////////////// | ||||||
|  |   template<class Field> class SchurRedBlackDiagMooeeSolve : public SchurRedBlackBase<Field> { | ||||||
|  |   public: | ||||||
|  |     typedef CheckerBoardedSparseMatrixBase<Field> Matrix; | ||||||
|  |  | ||||||
|  |     SchurRedBlackDiagMooeeSolve(OperatorFunction<Field> &HermitianRBSolver, const bool initSubGuess = false, | ||||||
|  |         const bool _solnAsInitGuess = false)   | ||||||
|  |       : SchurRedBlackBase<Field> (HermitianRBSolver,initSubGuess,_solnAsInitGuess) {}; | ||||||
|  |  | ||||||
|  |  | ||||||
|  |     ////////////////////////////////////////////////////// | ||||||
|  |     // Override RedBlack specialisation | ||||||
|  |     ////////////////////////////////////////////////////// | ||||||
|  |     virtual void RedBlackSource(Matrix & _Matrix,const Field &src, Field &src_e,Field &src_o) | ||||||
|  |     { | ||||||
|  |       GridBase *grid = _Matrix.RedBlackGrid(); | ||||||
|  |       GridBase *fgrid= _Matrix.Grid(); | ||||||
|  |  | ||||||
|  |       Field   tmp(grid); | ||||||
|  |       Field  Mtmp(grid); | ||||||
|  |  | ||||||
|  |       pickCheckerboard(Even,src_e,src); | ||||||
|  |       pickCheckerboard(Odd ,src_o,src); | ||||||
|  |  | ||||||
|  |       ///////////////////////////////////////////////////// | ||||||
|  |       // src_o = Mdag * (source_o - Moe MeeInv source_e) | ||||||
|  |       ///////////////////////////////////////////////////// | ||||||
|  |       _Matrix.MooeeInv(src_e,tmp);     assert(  tmp.Checkerboard() ==Even); | ||||||
|  |       _Matrix.Meooe   (tmp,Mtmp);      assert( Mtmp.Checkerboard() ==Odd);      | ||||||
|  |       tmp=src_o-Mtmp;                  assert(  tmp.Checkerboard() ==Odd);      | ||||||
|  |  | ||||||
|  |       // get the right MpcDag | ||||||
|  |       SchurDiagMooeeOperator<Matrix,Field> _HermOpEO(_Matrix); | ||||||
|  |       _HermOpEO.MpcDag(tmp,src_o);     assert(src_o.Checkerboard() ==Odd);        | ||||||
|  |  | ||||||
|  |     } | ||||||
|  |     virtual void RedBlackSolution(Matrix & _Matrix,const Field &sol_o, const Field &src_e,Field &sol) | ||||||
|  |     { | ||||||
|  |       GridBase *grid = _Matrix.RedBlackGrid(); | ||||||
|  |       GridBase *fgrid= _Matrix.Grid(); | ||||||
|  |  | ||||||
|  |       Field   tmp(grid); | ||||||
|  |       Field  sol_e(grid); | ||||||
|  |       Field  src_e_i(grid); | ||||||
|  |       /////////////////////////////////////////////////// | ||||||
|  |       // sol_e = M_ee^-1 * ( src_e - Meo sol_o )... | ||||||
|  |       /////////////////////////////////////////////////// | ||||||
|  |       _Matrix.Meooe(sol_o,tmp);          assert(  tmp.Checkerboard()   ==Even); | ||||||
|  |       src_e_i = src_e-tmp;               assert(  src_e_i.Checkerboard() ==Even); | ||||||
|  |       _Matrix.MooeeInv(src_e_i,sol_e);   assert(  sol_e.Checkerboard() ==Even); | ||||||
|  |       | ||||||
|  |       setCheckerboard(sol,sol_e); assert(  sol_e.Checkerboard() ==Even); | ||||||
|  |       setCheckerboard(sol,sol_o); assert(  sol_o.Checkerboard() ==Odd ); | ||||||
|  |     } | ||||||
|  |     virtual void RedBlackSolve   (Matrix & _Matrix,const Field &src_o, Field &sol_o) | ||||||
|  |     { | ||||||
|  |       SchurDiagMooeeOperator<Matrix,Field> _HermOpEO(_Matrix); | ||||||
|  |       this->_HermitianRBSolver(_HermOpEO,src_o,sol_o);  assert(sol_o.Checkerboard()==Odd); | ||||||
|  |     }; | ||||||
|  |     virtual void RedBlackSolve   (Matrix & _Matrix,const std::vector<Field> &src_o,  std::vector<Field> &sol_o) | ||||||
|  |     { | ||||||
|  |       SchurDiagMooeeOperator<Matrix,Field> _HermOpEO(_Matrix); | ||||||
|  |       this->_HermitianRBSolver(_HermOpEO,src_o,sol_o);  | ||||||
|  |     } | ||||||
|  |   }; | ||||||
|  |  | ||||||
|  |   template<class Field> class NonHermitianSchurRedBlackDiagMooeeSolve : public SchurRedBlackBase<Field>  | ||||||
|  |   { | ||||||
|  |     public: | ||||||
|  |       typedef CheckerBoardedSparseMatrixBase<Field> Matrix; | ||||||
|  |  | ||||||
|  |       NonHermitianSchurRedBlackDiagMooeeSolve(OperatorFunction<Field>& RBSolver, const bool initSubGuess = false, | ||||||
|  |           const bool _solnAsInitGuess = false)   | ||||||
|  |       : SchurRedBlackBase<Field>(RBSolver, initSubGuess, _solnAsInitGuess) {}; | ||||||
|  |  | ||||||
|  |       ////////////////////////////////////////////////////// | ||||||
|  |       // Override RedBlack specialisation | ||||||
|  |       ////////////////////////////////////////////////////// | ||||||
|  |       virtual void RedBlackSource(Matrix& _Matrix, const Field& src, Field& src_e, Field& src_o) | ||||||
|  |       { | ||||||
|  |         GridBase* grid  = _Matrix.RedBlackGrid(); | ||||||
|  |         GridBase* fgrid = _Matrix.Grid(); | ||||||
|  |  | ||||||
|  |         Field  tmp(grid); | ||||||
|  |         Field Mtmp(grid); | ||||||
|  |  | ||||||
|  |         pickCheckerboard(Even, src_e, src); | ||||||
|  |         pickCheckerboard(Odd , src_o, src); | ||||||
|  |  | ||||||
|  |         ///////////////////////////////////////////////////// | ||||||
|  |         // src_o = Mdag * (source_o - Moe MeeInv source_e) | ||||||
|  |         ///////////////////////////////////////////////////// | ||||||
|  |         _Matrix.MooeeInv(src_e, tmp);   assert(   tmp.Checkerboard() == Even ); | ||||||
|  |         _Matrix.Meooe   (tmp, Mtmp);    assert(  Mtmp.Checkerboard() == Odd  );      | ||||||
|  |         src_o -= Mtmp;                  assert( src_o.Checkerboard() == Odd  );      | ||||||
|  |       } | ||||||
|  |        | ||||||
|  |       virtual void RedBlackSolution(Matrix& _Matrix, const Field& sol_o, const Field& src_e, Field& sol) | ||||||
|  |       { | ||||||
|  |         GridBase* grid  = _Matrix.RedBlackGrid(); | ||||||
|  |         GridBase* fgrid = _Matrix.Grid(); | ||||||
|  |  | ||||||
|  |         Field     tmp(grid); | ||||||
|  |         Field   sol_e(grid); | ||||||
|  |         Field src_e_i(grid); | ||||||
|  |          | ||||||
|  |         /////////////////////////////////////////////////// | ||||||
|  |         // sol_e = M_ee^-1 * ( src_e - Meo sol_o )... | ||||||
|  |         /////////////////////////////////////////////////// | ||||||
|  |         _Matrix.Meooe(sol_o, tmp);         assert(     tmp.Checkerboard() == Even ); | ||||||
|  |         src_e_i = src_e - tmp;             assert( src_e_i.Checkerboard() == Even ); | ||||||
|  |         _Matrix.MooeeInv(src_e_i, sol_e);  assert(   sol_e.Checkerboard() == Even ); | ||||||
|  |         | ||||||
|  |         setCheckerboard(sol, sol_e); assert( sol_e.Checkerboard() == Even ); | ||||||
|  |         setCheckerboard(sol, sol_o); assert( sol_o.Checkerboard() == Odd  ); | ||||||
|  |       } | ||||||
|  |  | ||||||
|  |       virtual void RedBlackSolve(Matrix& _Matrix, const Field& src_o, Field& sol_o) | ||||||
|  |       { | ||||||
|  |         NonHermitianSchurDiagMooeeOperator<Matrix,Field> _OpEO(_Matrix); | ||||||
|  |         this->_HermitianRBSolver(_OpEO, src_o, sol_o);  assert(sol_o.Checkerboard() == Odd); | ||||||
|  |       } | ||||||
|  |  | ||||||
|  |       virtual void RedBlackSolve(Matrix& _Matrix, const std::vector<Field>& src_o, std::vector<Field>& sol_o) | ||||||
|  |       { | ||||||
|  |         NonHermitianSchurDiagMooeeOperator<Matrix,Field> _OpEO(_Matrix); | ||||||
|  |         this->_HermitianRBSolver(_OpEO, src_o, sol_o);  | ||||||
|  |       } | ||||||
|  |   }; | ||||||
|  |  | ||||||
|  |   /////////////////////////////////////////////////////////////////////////////////////////////////////// | ||||||
|  |   // Site diagonal is identity, right preconditioned by Mee^inv | ||||||
|  |   // ( 1 - Meo Moo^inv Moe Mee^inv  ) phi =( 1 - Meo Moo^inv Moe Mee^inv  ) Mee psi =  = eta  = eta | ||||||
|  |   //=> psi = MeeInv phi | ||||||
|  |   /////////////////////////////////////////////////////////////////////////////////////////////////////// | ||||||
|  |   template<class Field> class SchurRedBlackDiagTwoSolve : public SchurRedBlackBase<Field> { | ||||||
|  |   public: | ||||||
|  |     typedef CheckerBoardedSparseMatrixBase<Field> Matrix; | ||||||
|  |  | ||||||
|  |     ///////////////////////////////////////////////////// | ||||||
|  |     // Wrap the usual normal equations Schur trick | ||||||
|  |     ///////////////////////////////////////////////////// | ||||||
|  |   SchurRedBlackDiagTwoSolve(OperatorFunction<Field> &HermitianRBSolver, const bool initSubGuess = false, | ||||||
|  |       const bool _solnAsInitGuess = false)   | ||||||
|  |     : SchurRedBlackBase<Field>(HermitianRBSolver,initSubGuess,_solnAsInitGuess) {}; | ||||||
|  |  | ||||||
|  |     virtual void RedBlackSource(Matrix & _Matrix,const Field &src, Field &src_e,Field &src_o) | ||||||
|  |     { | ||||||
|  |       GridBase *grid = _Matrix.RedBlackGrid(); | ||||||
|  |       GridBase *fgrid= _Matrix.Grid(); | ||||||
|  |  | ||||||
|  |       SchurDiagTwoOperator<Matrix,Field> _HermOpEO(_Matrix); | ||||||
|  |        | ||||||
|  |       Field   tmp(grid); | ||||||
|  |       Field  Mtmp(grid); | ||||||
|  |  | ||||||
|  |       pickCheckerboard(Even,src_e,src); | ||||||
|  |       pickCheckerboard(Odd ,src_o,src); | ||||||
|  |      | ||||||
|  |       ///////////////////////////////////////////////////// | ||||||
|  |       // src_o = Mdag * (source_o - Moe MeeInv source_e) | ||||||
|  |       ///////////////////////////////////////////////////// | ||||||
|  |       _Matrix.MooeeInv(src_e,tmp);     assert(  tmp.Checkerboard() ==Even); | ||||||
|  |       _Matrix.Meooe   (tmp,Mtmp);      assert( Mtmp.Checkerboard() ==Odd);      | ||||||
|  |       tmp=src_o-Mtmp;                  assert(  tmp.Checkerboard() ==Odd);      | ||||||
|  |  | ||||||
|  |       // get the right MpcDag | ||||||
|  |       _HermOpEO.MpcDag(tmp,src_o);     assert(src_o.Checkerboard() ==Odd);        | ||||||
|  |     } | ||||||
|  |  | ||||||
|  |     virtual void RedBlackSolution(Matrix & _Matrix,const Field &sol_o, const Field &src_e,Field &sol) | ||||||
|  |     { | ||||||
|  |       GridBase *grid = _Matrix.RedBlackGrid(); | ||||||
|  |       GridBase *fgrid= _Matrix.Grid(); | ||||||
|  |  | ||||||
|  |       Field   sol_o_i(grid); | ||||||
|  |       Field   tmp(grid); | ||||||
|  |       Field   sol_e(grid); | ||||||
|  |  | ||||||
|  |       //////////////////////////////////////////////// | ||||||
|  |       // MooeeInv due to pecond | ||||||
|  |       //////////////////////////////////////////////// | ||||||
|  |       _Matrix.MooeeInv(sol_o,tmp); | ||||||
|  |       sol_o_i = tmp; | ||||||
|  |  | ||||||
|  |       /////////////////////////////////////////////////// | ||||||
|  |       // sol_e = M_ee^-1 * ( src_e - Meo sol_o )... | ||||||
|  |       /////////////////////////////////////////////////// | ||||||
|  |       _Matrix.Meooe(sol_o_i,tmp);    assert(  tmp.Checkerboard()   ==Even); | ||||||
|  |       tmp = src_e-tmp;               assert(  src_e.Checkerboard() ==Even); | ||||||
|  |       _Matrix.MooeeInv(tmp,sol_e);   assert(  sol_e.Checkerboard() ==Even); | ||||||
|  |       | ||||||
|  |       setCheckerboard(sol,sol_e);    assert(  sol_e.Checkerboard() ==Even); | ||||||
|  |       setCheckerboard(sol,sol_o_i);  assert(  sol_o_i.Checkerboard() ==Odd ); | ||||||
|  |     }; | ||||||
|  |  | ||||||
|  |     virtual void RedBlackSolve   (Matrix & _Matrix,const Field &src_o, Field &sol_o) | ||||||
|  |     { | ||||||
|  |       SchurDiagTwoOperator<Matrix,Field> _HermOpEO(_Matrix); | ||||||
|  |       this->_HermitianRBSolver(_HermOpEO,src_o,sol_o); | ||||||
|  |     }; | ||||||
|  |     virtual void RedBlackSolve   (Matrix & _Matrix,const std::vector<Field> &src_o,  std::vector<Field> &sol_o) | ||||||
|  |     { | ||||||
|  |       SchurDiagTwoOperator<Matrix,Field> _HermOpEO(_Matrix); | ||||||
|  |       this->_HermitianRBSolver(_HermOpEO,src_o,sol_o);  | ||||||
|  |     } | ||||||
|  |   }; | ||||||
|  |  | ||||||
|  |   template<class Field> class NonHermitianSchurRedBlackDiagTwoSolve : public SchurRedBlackBase<Field>  | ||||||
|  |   { | ||||||
|  |     public: | ||||||
|  |       typedef CheckerBoardedSparseMatrixBase<Field> Matrix; | ||||||
|  |  | ||||||
|  |       ///////////////////////////////////////////////////// | ||||||
|  |       // Wrap the usual normal equations Schur trick | ||||||
|  |       ///////////////////////////////////////////////////// | ||||||
|  |       NonHermitianSchurRedBlackDiagTwoSolve(OperatorFunction<Field>& RBSolver, const bool initSubGuess = false, | ||||||
|  |           const bool _solnAsInitGuess = false)   | ||||||
|  |       : SchurRedBlackBase<Field>(RBSolver, initSubGuess, _solnAsInitGuess) {}; | ||||||
|  |  | ||||||
|  |       virtual void RedBlackSource(Matrix& _Matrix, const Field& src, Field& src_e, Field& src_o) | ||||||
|  |       { | ||||||
|  |         GridBase* grid  = _Matrix.RedBlackGrid(); | ||||||
|  |         GridBase* fgrid = _Matrix.Grid(); | ||||||
|  |  | ||||||
|  |         Field  tmp(grid); | ||||||
|  |         Field Mtmp(grid); | ||||||
|  |  | ||||||
|  |         pickCheckerboard(Even, src_e, src); | ||||||
|  |         pickCheckerboard(Odd , src_o, src); | ||||||
|  |        | ||||||
|  |         ///////////////////////////////////////////////////// | ||||||
|  |         // src_o = Mdag * (source_o - Moe MeeInv source_e) | ||||||
|  |         ///////////////////////////////////////////////////// | ||||||
|  |         _Matrix.MooeeInv(src_e, tmp);   assert(   tmp.Checkerboard() == Even ); | ||||||
|  |         _Matrix.Meooe   (tmp, Mtmp);    assert(  Mtmp.Checkerboard() == Odd  );      | ||||||
|  |         src_o -= Mtmp;                  assert( src_o.Checkerboard() == Odd  );      | ||||||
|  |       } | ||||||
|  |  | ||||||
|  |       virtual void RedBlackSolution(Matrix& _Matrix, const Field& sol_o, const Field& src_e, Field& sol) | ||||||
|  |       { | ||||||
|  |         GridBase* grid  = _Matrix.RedBlackGrid(); | ||||||
|  |         GridBase* fgrid = _Matrix.Grid(); | ||||||
|  |  | ||||||
|  |         Field sol_o_i(grid); | ||||||
|  |         Field     tmp(grid); | ||||||
|  |         Field   sol_e(grid); | ||||||
|  |  | ||||||
|  |         //////////////////////////////////////////////// | ||||||
|  |         // MooeeInv due to pecond | ||||||
|  |         //////////////////////////////////////////////// | ||||||
|  |         _Matrix.MooeeInv(sol_o, tmp); | ||||||
|  |         sol_o_i = tmp; | ||||||
|  |  | ||||||
|  |         /////////////////////////////////////////////////// | ||||||
|  |         // sol_e = M_ee^-1 * ( src_e - Meo sol_o )... | ||||||
|  |         /////////////////////////////////////////////////// | ||||||
|  |         _Matrix.Meooe(sol_o_i, tmp);    assert(   tmp.Checkerboard() == Even ); | ||||||
|  |         tmp = src_e - tmp;              assert( src_e.Checkerboard() == Even ); | ||||||
|  |         _Matrix.MooeeInv(tmp, sol_e);   assert( sol_e.Checkerboard() == Even ); | ||||||
|  |         | ||||||
|  |         setCheckerboard(sol, sol_e);    assert(   sol_e.Checkerboard() == Even ); | ||||||
|  |         setCheckerboard(sol, sol_o_i);  assert( sol_o_i.Checkerboard() == Odd  ); | ||||||
|  |       }; | ||||||
|  |  | ||||||
|  |       virtual void RedBlackSolve(Matrix& _Matrix, const Field& src_o, Field& sol_o) | ||||||
|  |       { | ||||||
|  |         NonHermitianSchurDiagTwoOperator<Matrix,Field> _OpEO(_Matrix); | ||||||
|  |         this->_HermitianRBSolver(_OpEO, src_o, sol_o); | ||||||
|  |       }; | ||||||
|  |  | ||||||
|  |       virtual void RedBlackSolve(Matrix& _Matrix, const std::vector<Field>& src_o,  std::vector<Field>& sol_o) | ||||||
|  |       { | ||||||
|  |         NonHermitianSchurDiagTwoOperator<Matrix,Field> _OpEO(_Matrix); | ||||||
|  |         this->_HermitianRBSolver(_OpEO, src_o, sol_o);  | ||||||
|  |       } | ||||||
|  |   }; | ||||||
|  | } | ||||||
|  |  | ||||||
|  | #endif | ||||||
							
								
								
									
										183
									
								
								Grid/allocator/AlignedAllocator.h
									
									
									
									
									
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										183
									
								
								Grid/allocator/AlignedAllocator.h
									
									
									
									
									
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							| @@ -0,0 +1,183 @@ | |||||||
|  | /************************************************************************************* | ||||||
|  |  | ||||||
|  |     Grid physics library, www.github.com/paboyle/Grid  | ||||||
|  |  | ||||||
|  |     Source file: ./lib/AlignedAllocator.h | ||||||
|  |  | ||||||
|  |     Copyright (C) 2015 | ||||||
|  |  | ||||||
|  | Author: Azusa Yamaguchi <ayamaguc@staffmail.ed.ac.uk> | ||||||
|  | Author: Peter Boyle <paboyle@ph.ed.ac.uk> | ||||||
|  |  | ||||||
|  |     This program is free software; you can redistribute it and/or modify | ||||||
|  |     it under the terms of the GNU General Public License as published by | ||||||
|  |     the Free Software Foundation; either version 2 of the License, or | ||||||
|  |     (at your option) any later version. | ||||||
|  |  | ||||||
|  |     This program is distributed in the hope that it will be useful, | ||||||
|  |     but WITHOUT ANY WARRANTY; without even the implied warranty of | ||||||
|  |     MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the | ||||||
|  |     GNU General Public License for more details. | ||||||
|  |  | ||||||
|  |     You should have received a copy of the GNU General Public License along | ||||||
|  |     with this program; if not, write to the Free Software Foundation, Inc., | ||||||
|  |     51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. | ||||||
|  |  | ||||||
|  |     See the full license in the file "LICENSE" in the top level distribution directory | ||||||
|  | *************************************************************************************/ | ||||||
|  | /*  END LEGAL */ | ||||||
|  | #pragma once | ||||||
|  |  | ||||||
|  | NAMESPACE_BEGIN(Grid); | ||||||
|  |  | ||||||
|  | template<typename _Tp> | ||||||
|  | class alignedAllocator { | ||||||
|  | public:  | ||||||
|  |   typedef std::size_t     size_type; | ||||||
|  |   typedef std::ptrdiff_t  difference_type; | ||||||
|  |   typedef _Tp*       pointer; | ||||||
|  |   typedef const _Tp* const_pointer; | ||||||
|  |   typedef _Tp&       reference; | ||||||
|  |   typedef const _Tp& const_reference; | ||||||
|  |   typedef _Tp        value_type; | ||||||
|  |  | ||||||
|  |   template<typename _Tp1>  struct rebind { typedef alignedAllocator<_Tp1> other; }; | ||||||
|  |   alignedAllocator() throw() { } | ||||||
|  |   alignedAllocator(const alignedAllocator&) throw() { } | ||||||
|  |   template<typename _Tp1> alignedAllocator(const alignedAllocator<_Tp1>&) throw() { } | ||||||
|  |   ~alignedAllocator() throw() { } | ||||||
|  |   pointer       address(reference __x)       const { return &__x; } | ||||||
|  |   size_type  max_size() const throw() { return size_t(-1) / sizeof(_Tp); } | ||||||
|  |  | ||||||
|  |   pointer allocate(size_type __n, const void* _p= 0) | ||||||
|  |   {  | ||||||
|  |     size_type bytes = __n*sizeof(_Tp); | ||||||
|  |     profilerAllocate(bytes); | ||||||
|  |     _Tp *ptr = (_Tp*) MemoryManager::CpuAllocate(bytes); | ||||||
|  |     assert( ( (_Tp*)ptr != (_Tp *)NULL ) ); | ||||||
|  |     return ptr; | ||||||
|  |   } | ||||||
|  |  | ||||||
|  |   void deallocate(pointer __p, size_type __n)  | ||||||
|  |   {  | ||||||
|  |     size_type bytes = __n * sizeof(_Tp); | ||||||
|  |     profilerFree(bytes); | ||||||
|  |     MemoryManager::CpuFree((void *)__p,bytes); | ||||||
|  |   } | ||||||
|  |  | ||||||
|  |   // FIXME: hack for the copy constructor: it must be avoided to avoid single thread loop | ||||||
|  |   void construct(pointer __p, const _Tp& __val) { assert(0);}; | ||||||
|  |   void construct(pointer __p) { }; | ||||||
|  |   void destroy(pointer __p) { }; | ||||||
|  | }; | ||||||
|  | template<typename _Tp>  inline bool operator==(const alignedAllocator<_Tp>&, const alignedAllocator<_Tp>&){ return true; } | ||||||
|  | template<typename _Tp>  inline bool operator!=(const alignedAllocator<_Tp>&, const alignedAllocator<_Tp>&){ return false; } | ||||||
|  |  | ||||||
|  | ////////////////////////////////////////////////////////////////////////////////////// | ||||||
|  | // Unified virtual memory | ||||||
|  | ////////////////////////////////////////////////////////////////////////////////////// | ||||||
|  | template<typename _Tp> | ||||||
|  | class uvmAllocator { | ||||||
|  | public:  | ||||||
|  |   typedef std::size_t     size_type; | ||||||
|  |   typedef std::ptrdiff_t  difference_type; | ||||||
|  |   typedef _Tp*       pointer; | ||||||
|  |   typedef const _Tp* const_pointer; | ||||||
|  |   typedef _Tp&       reference; | ||||||
|  |   typedef const _Tp& const_reference; | ||||||
|  |   typedef _Tp        value_type; | ||||||
|  |  | ||||||
|  |   template<typename _Tp1>  struct rebind { typedef uvmAllocator<_Tp1> other; }; | ||||||
|  |   uvmAllocator() throw() { } | ||||||
|  |   uvmAllocator(const uvmAllocator&) throw() { } | ||||||
|  |   template<typename _Tp1> uvmAllocator(const uvmAllocator<_Tp1>&) throw() { } | ||||||
|  |   ~uvmAllocator() throw() { } | ||||||
|  |   pointer       address(reference __x)       const { return &__x; } | ||||||
|  |   size_type  max_size() const throw() { return size_t(-1) / sizeof(_Tp); } | ||||||
|  |  | ||||||
|  |   pointer allocate(size_type __n, const void* _p= 0) | ||||||
|  |   {  | ||||||
|  |     size_type bytes = __n*sizeof(_Tp); | ||||||
|  |     profilerAllocate(bytes); | ||||||
|  |     _Tp *ptr = (_Tp*) MemoryManager::SharedAllocate(bytes); | ||||||
|  |     assert( ( (_Tp*)ptr != (_Tp *)NULL ) ); | ||||||
|  |     return ptr; | ||||||
|  |   } | ||||||
|  |  | ||||||
|  |   void deallocate(pointer __p, size_type __n)  | ||||||
|  |   {  | ||||||
|  |     size_type bytes = __n * sizeof(_Tp); | ||||||
|  |     profilerFree(bytes); | ||||||
|  |     MemoryManager::SharedFree((void *)__p,bytes); | ||||||
|  |   } | ||||||
|  |  | ||||||
|  |   void construct(pointer __p, const _Tp& __val) { new((void *)__p) _Tp(__val); }; | ||||||
|  |   void construct(pointer __p) { }; | ||||||
|  |   void destroy(pointer __p) { }; | ||||||
|  | }; | ||||||
|  | template<typename _Tp>  inline bool operator==(const uvmAllocator<_Tp>&, const uvmAllocator<_Tp>&){ return true; } | ||||||
|  | template<typename _Tp>  inline bool operator!=(const uvmAllocator<_Tp>&, const uvmAllocator<_Tp>&){ return false; } | ||||||
|  |  | ||||||
|  | //////////////////////////////////////////////////////////////////////////////// | ||||||
|  | // Device memory | ||||||
|  | //////////////////////////////////////////////////////////////////////////////// | ||||||
|  | template<typename _Tp> | ||||||
|  | class devAllocator { | ||||||
|  | public:  | ||||||
|  |   typedef std::size_t     size_type; | ||||||
|  |   typedef std::ptrdiff_t  difference_type; | ||||||
|  |   typedef _Tp*       pointer; | ||||||
|  |   typedef const _Tp* const_pointer; | ||||||
|  |   typedef _Tp&       reference; | ||||||
|  |   typedef const _Tp& const_reference; | ||||||
|  |   typedef _Tp        value_type; | ||||||
|  |  | ||||||
|  |   template<typename _Tp1>  struct rebind { typedef devAllocator<_Tp1> other; }; | ||||||
|  |   devAllocator() throw() { } | ||||||
|  |   devAllocator(const devAllocator&) throw() { } | ||||||
|  |   template<typename _Tp1> devAllocator(const devAllocator<_Tp1>&) throw() { } | ||||||
|  |   ~devAllocator() throw() { } | ||||||
|  |   pointer       address(reference __x)       const { return &__x; } | ||||||
|  |   size_type  max_size() const throw() { return size_t(-1) / sizeof(_Tp); } | ||||||
|  |  | ||||||
|  |   pointer allocate(size_type __n, const void* _p= 0) | ||||||
|  |   {  | ||||||
|  |     size_type bytes = __n*sizeof(_Tp); | ||||||
|  |     profilerAllocate(bytes); | ||||||
|  |     _Tp *ptr = (_Tp*) MemoryManager::AcceleratorAllocate(bytes); | ||||||
|  |     assert( ( (_Tp*)ptr != (_Tp *)NULL ) ); | ||||||
|  |     return ptr; | ||||||
|  |   } | ||||||
|  |  | ||||||
|  |   void deallocate(pointer __p, size_type __n)  | ||||||
|  |   {  | ||||||
|  |     size_type bytes = __n * sizeof(_Tp); | ||||||
|  |     profilerFree(bytes); | ||||||
|  |     MemoryManager::AcceleratorFree((void *)__p,bytes); | ||||||
|  |   } | ||||||
|  |   void construct(pointer __p, const _Tp& __val) { }; | ||||||
|  |   void construct(pointer __p) { }; | ||||||
|  |   void destroy(pointer __p) { }; | ||||||
|  | }; | ||||||
|  | template<typename _Tp>  inline bool operator==(const devAllocator<_Tp>&, const devAllocator<_Tp>&){ return true; } | ||||||
|  | template<typename _Tp>  inline bool operator!=(const devAllocator<_Tp>&, const devAllocator<_Tp>&){ return false; } | ||||||
|  |  | ||||||
|  | //////////////////////////////////////////////////////////////////////////////// | ||||||
|  | // Template typedefs | ||||||
|  | //////////////////////////////////////////////////////////////////////////////// | ||||||
|  | #ifdef ACCELERATOR_CSHIFT | ||||||
|  | // Cshift on device | ||||||
|  | template<class T> using cshiftAllocator = devAllocator<T>; | ||||||
|  | #else | ||||||
|  | // Cshift on host | ||||||
|  | template<class T> using cshiftAllocator = std::allocator<T>; | ||||||
|  | #endif | ||||||
|  |  | ||||||
|  | template<class T> using Vector        = std::vector<T,uvmAllocator<T> >;            | ||||||
|  | template<class T> using stencilVector = std::vector<T,alignedAllocator<T> >;            | ||||||
|  | template<class T> using commVector = std::vector<T,devAllocator<T> >; | ||||||
|  | template<class T> using cshiftVector = std::vector<T,cshiftAllocator<T> >; | ||||||
|  |  | ||||||
|  | NAMESPACE_END(Grid); | ||||||
|  |  | ||||||
|  |  | ||||||
							
								
								
									
										4
									
								
								Grid/allocator/Allocator.h
									
									
									
									
									
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										4
									
								
								Grid/allocator/Allocator.h
									
									
									
									
									
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							| @@ -0,0 +1,4 @@ | |||||||
|  | #pragma once | ||||||
|  | #include <Grid/allocator/MemoryStats.h> | ||||||
|  | #include <Grid/allocator/MemoryManager.h> | ||||||
|  | #include <Grid/allocator/AlignedAllocator.h> | ||||||
							
								
								
									
										300
									
								
								Grid/allocator/MemoryManager.cc
									
									
									
									
									
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										300
									
								
								Grid/allocator/MemoryManager.cc
									
									
									
									
									
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							| @@ -0,0 +1,300 @@ | |||||||
|  | #include <Grid/GridCore.h> | ||||||
|  |  | ||||||
|  | NAMESPACE_BEGIN(Grid); | ||||||
|  |  | ||||||
|  | /*Allocation types, saying which pointer cache should be used*/ | ||||||
|  | #define Cpu      (0) | ||||||
|  | #define CpuSmall (1) | ||||||
|  | #define Acc      (2) | ||||||
|  | #define AccSmall (3) | ||||||
|  | #define Shared   (4) | ||||||
|  | #define SharedSmall (5) | ||||||
|  | #undef GRID_MM_VERBOSE  | ||||||
|  | uint64_t total_shared; | ||||||
|  | uint64_t total_device; | ||||||
|  | uint64_t total_host;; | ||||||
|  | void MemoryManager::PrintBytes(void) | ||||||
|  | { | ||||||
|  |   std::cout << " MemoryManager : ------------------------------------ "<<std::endl; | ||||||
|  |   std::cout << " MemoryManager : PrintBytes "<<std::endl; | ||||||
|  |   std::cout << " MemoryManager : ------------------------------------ "<<std::endl; | ||||||
|  |   std::cout << " MemoryManager : "<<(total_shared>>20)<<" shared      Mbytes "<<std::endl; | ||||||
|  |   std::cout << " MemoryManager : "<<(total_device>>20)<<" accelerator Mbytes "<<std::endl; | ||||||
|  |   std::cout << " MemoryManager : "<<(total_host>>20)  <<" cpu         Mbytes "<<std::endl; | ||||||
|  |   uint64_t cacheBytes; | ||||||
|  |   cacheBytes = CacheBytes[Cpu]; | ||||||
|  |   std::cout << " MemoryManager : "<<(cacheBytes>>20) <<" cpu cache Mbytes "<<std::endl; | ||||||
|  |   cacheBytes = CacheBytes[Acc]; | ||||||
|  |   std::cout << " MemoryManager : "<<(cacheBytes>>20) <<" acc cache Mbytes "<<std::endl; | ||||||
|  |   cacheBytes = CacheBytes[Shared]; | ||||||
|  |   std::cout << " MemoryManager : "<<(cacheBytes>>20) <<" shared cache Mbytes "<<std::endl; | ||||||
|  |    | ||||||
|  | #ifdef GRID_CUDA | ||||||
|  |   cuda_mem(); | ||||||
|  | #endif | ||||||
|  |    | ||||||
|  | } | ||||||
|  |  | ||||||
|  | ////////////////////////////////////////////////////////////////////// | ||||||
|  | // Data tables for recently freed pooiniter caches | ||||||
|  | ////////////////////////////////////////////////////////////////////// | ||||||
|  | MemoryManager::AllocationCacheEntry MemoryManager::Entries[MemoryManager::NallocType][MemoryManager::NallocCacheMax]; | ||||||
|  | int MemoryManager::Victim[MemoryManager::NallocType]; | ||||||
|  | int MemoryManager::Ncache[MemoryManager::NallocType] = { 2, 8, 2, 8, 2, 8 }; | ||||||
|  | uint64_t MemoryManager::CacheBytes[MemoryManager::NallocType]; | ||||||
|  | ////////////////////////////////////////////////////////////////////// | ||||||
|  | // Actual allocation and deallocation utils | ||||||
|  | ////////////////////////////////////////////////////////////////////// | ||||||
|  | void *MemoryManager::AcceleratorAllocate(size_t bytes) | ||||||
|  | { | ||||||
|  |   total_device+=bytes; | ||||||
|  |   void *ptr = (void *) Lookup(bytes,Acc); | ||||||
|  |   if ( ptr == (void *) NULL ) { | ||||||
|  |     ptr = (void *) acceleratorAllocDevice(bytes); | ||||||
|  |   } | ||||||
|  | #ifdef GRID_MM_VERBOSE | ||||||
|  |   std::cout <<"AcceleratorAllocate "<<std::endl; | ||||||
|  |   PrintBytes(); | ||||||
|  | #endif | ||||||
|  |   return ptr; | ||||||
|  | } | ||||||
|  | void  MemoryManager::AcceleratorFree    (void *ptr,size_t bytes) | ||||||
|  | { | ||||||
|  |   total_device-=bytes; | ||||||
|  |   void *__freeme = Insert(ptr,bytes,Acc); | ||||||
|  |   if ( __freeme ) { | ||||||
|  |     acceleratorFreeDevice(__freeme); | ||||||
|  |   } | ||||||
|  | #ifdef GRID_MM_VERBOSE | ||||||
|  |   std::cout <<"AcceleratorFree "<<std::endl; | ||||||
|  |   PrintBytes(); | ||||||
|  | #endif | ||||||
|  | } | ||||||
|  | void *MemoryManager::SharedAllocate(size_t bytes) | ||||||
|  | { | ||||||
|  |   total_shared+=bytes; | ||||||
|  |   void *ptr = (void *) Lookup(bytes,Shared); | ||||||
|  |   if ( ptr == (void *) NULL ) { | ||||||
|  |     ptr = (void *) acceleratorAllocShared(bytes); | ||||||
|  |   } | ||||||
|  | #ifdef GRID_MM_VERBOSE | ||||||
|  |   std::cout <<"SharedAllocate "<<std::endl; | ||||||
|  |   PrintBytes(); | ||||||
|  | #endif | ||||||
|  |   return ptr; | ||||||
|  | } | ||||||
|  | void  MemoryManager::SharedFree    (void *ptr,size_t bytes) | ||||||
|  | { | ||||||
|  |   total_shared-=bytes; | ||||||
|  |   void *__freeme = Insert(ptr,bytes,Shared); | ||||||
|  |   if ( __freeme ) { | ||||||
|  |     acceleratorFreeShared(__freeme); | ||||||
|  |   } | ||||||
|  | #ifdef GRID_MM_VERBOSE | ||||||
|  |   std::cout <<"SharedFree "<<std::endl; | ||||||
|  |   PrintBytes(); | ||||||
|  | #endif | ||||||
|  | } | ||||||
|  | #ifdef GRID_UVM | ||||||
|  | void *MemoryManager::CpuAllocate(size_t bytes) | ||||||
|  | { | ||||||
|  |   total_host+=bytes; | ||||||
|  |   void *ptr = (void *) Lookup(bytes,Cpu); | ||||||
|  |   if ( ptr == (void *) NULL ) { | ||||||
|  |     ptr = (void *) acceleratorAllocShared(bytes); | ||||||
|  |   } | ||||||
|  | #ifdef GRID_MM_VERBOSE | ||||||
|  |   std::cout <<"CpuAllocate "<<std::endl; | ||||||
|  |   PrintBytes(); | ||||||
|  | #endif | ||||||
|  |   return ptr; | ||||||
|  | } | ||||||
|  | void  MemoryManager::CpuFree    (void *_ptr,size_t bytes) | ||||||
|  | { | ||||||
|  |   total_host-=bytes; | ||||||
|  |   NotifyDeletion(_ptr); | ||||||
|  |   void *__freeme = Insert(_ptr,bytes,Cpu); | ||||||
|  |   if ( __freeme ) {  | ||||||
|  |     acceleratorFreeShared(__freeme); | ||||||
|  |   } | ||||||
|  | #ifdef GRID_MM_VERBOSE | ||||||
|  |   std::cout <<"CpuFree "<<std::endl; | ||||||
|  |   PrintBytes(); | ||||||
|  | #endif | ||||||
|  | } | ||||||
|  | #else | ||||||
|  | void *MemoryManager::CpuAllocate(size_t bytes) | ||||||
|  | { | ||||||
|  |   total_host+=bytes; | ||||||
|  |   void *ptr = (void *) Lookup(bytes,Cpu); | ||||||
|  |   if ( ptr == (void *) NULL ) { | ||||||
|  |     ptr = (void *) acceleratorAllocCpu(bytes); | ||||||
|  |   } | ||||||
|  | #ifdef GRID_MM_VERBOSE | ||||||
|  |   std::cout <<"CpuAllocate "<<std::endl; | ||||||
|  |   PrintBytes(); | ||||||
|  | #endif | ||||||
|  |   return ptr; | ||||||
|  | } | ||||||
|  | void  MemoryManager::CpuFree    (void *_ptr,size_t bytes) | ||||||
|  | { | ||||||
|  |   total_host-=bytes; | ||||||
|  |   NotifyDeletion(_ptr); | ||||||
|  |   void *__freeme = Insert(_ptr,bytes,Cpu); | ||||||
|  |   if ( __freeme ) {  | ||||||
|  |     acceleratorFreeCpu(__freeme); | ||||||
|  |   } | ||||||
|  | #ifdef GRID_MM_VERBOSE | ||||||
|  |   std::cout <<"CpuFree "<<std::endl; | ||||||
|  |   PrintBytes(); | ||||||
|  | #endif | ||||||
|  | } | ||||||
|  | #endif | ||||||
|  |  | ||||||
|  | ////////////////////////////////////////// | ||||||
|  | // call only once | ||||||
|  | ////////////////////////////////////////// | ||||||
|  | void MemoryManager::Init(void) | ||||||
|  | { | ||||||
|  |  | ||||||
|  |   char * str; | ||||||
|  |   int Nc; | ||||||
|  |    | ||||||
|  |   str= getenv("GRID_ALLOC_NCACHE_LARGE"); | ||||||
|  |   if ( str ) { | ||||||
|  |     Nc = atoi(str); | ||||||
|  |     if ( (Nc>=0) && (Nc < NallocCacheMax)) { | ||||||
|  |       Ncache[Cpu]=Nc; | ||||||
|  |       Ncache[Acc]=Nc; | ||||||
|  |       Ncache[Shared]=Nc; | ||||||
|  |     } | ||||||
|  |   } | ||||||
|  |  | ||||||
|  |   str= getenv("GRID_ALLOC_NCACHE_SMALL"); | ||||||
|  |   if ( str ) { | ||||||
|  |     Nc = atoi(str); | ||||||
|  |     if ( (Nc>=0) && (Nc < NallocCacheMax)) { | ||||||
|  |       Ncache[CpuSmall]=Nc; | ||||||
|  |       Ncache[AccSmall]=Nc; | ||||||
|  |       Ncache[SharedSmall]=Nc; | ||||||
|  |     } | ||||||
|  |   } | ||||||
|  |  | ||||||
|  | } | ||||||
|  |  | ||||||
|  | void MemoryManager::InitMessage(void) { | ||||||
|  |  | ||||||
|  | #ifndef GRID_UVM | ||||||
|  |   std::cout << GridLogMessage << "MemoryManager Cache "<< MemoryManager::DeviceMaxBytes <<" bytes "<<std::endl; | ||||||
|  | #endif | ||||||
|  |    | ||||||
|  |   std::cout << GridLogMessage<< "MemoryManager::Init() setting up"<<std::endl; | ||||||
|  | #ifdef ALLOCATION_CACHE | ||||||
|  |   std::cout << GridLogMessage<< "MemoryManager::Init() cache pool for recent allocations: SMALL "<<Ncache[CpuSmall]<<" LARGE "<<Ncache[Cpu]<<std::endl; | ||||||
|  | #endif | ||||||
|  |    | ||||||
|  | #ifdef GRID_UVM | ||||||
|  |   std::cout << GridLogMessage<< "MemoryManager::Init() Unified memory space"<<std::endl; | ||||||
|  | #ifdef GRID_CUDA | ||||||
|  |   std::cout << GridLogMessage<< "MemoryManager::Init() Using cudaMallocManaged"<<std::endl; | ||||||
|  | #endif | ||||||
|  | #ifdef GRID_HIP | ||||||
|  |   std::cout << GridLogMessage<< "MemoryManager::Init() Using hipMallocManaged"<<std::endl; | ||||||
|  | #endif | ||||||
|  | #ifdef GRID_SYCL | ||||||
|  |   std::cout << GridLogMessage<< "MemoryManager::Init() Using SYCL malloc_shared"<<std::endl; | ||||||
|  | #endif | ||||||
|  | #else | ||||||
|  |   std::cout << GridLogMessage<< "MemoryManager::Init() Non unified: Caching accelerator data in dedicated memory"<<std::endl; | ||||||
|  | #ifdef GRID_CUDA | ||||||
|  |   std::cout << GridLogMessage<< "MemoryManager::Init() Using cudaMalloc"<<std::endl; | ||||||
|  | #endif | ||||||
|  | #ifdef GRID_HIP | ||||||
|  |   std::cout << GridLogMessage<< "MemoryManager::Init() Using hipMalloc"<<std::endl; | ||||||
|  | #endif | ||||||
|  | #ifdef GRID_SYCL | ||||||
|  |   std::cout << GridLogMessage<< "MemoryManager::Init() Using SYCL malloc_device"<<std::endl; | ||||||
|  | #endif | ||||||
|  | #endif | ||||||
|  |  | ||||||
|  | } | ||||||
|  |  | ||||||
|  | void *MemoryManager::Insert(void *ptr,size_t bytes,int type)  | ||||||
|  | { | ||||||
|  | #ifdef ALLOCATION_CACHE | ||||||
|  |   bool small = (bytes < GRID_ALLOC_SMALL_LIMIT); | ||||||
|  |   int cache = type + small; | ||||||
|  |   return Insert(ptr,bytes,Entries[cache],Ncache[cache],Victim[cache],CacheBytes[cache]);   | ||||||
|  | #else | ||||||
|  |   return ptr; | ||||||
|  | #endif | ||||||
|  | } | ||||||
|  |  | ||||||
|  | void *MemoryManager::Insert(void *ptr,size_t bytes,AllocationCacheEntry *entries,int ncache,int &victim, uint64_t &cacheBytes)  | ||||||
|  | { | ||||||
|  |   assert(ncache>0); | ||||||
|  | #ifdef GRID_OMP | ||||||
|  |   assert(omp_in_parallel()==0); | ||||||
|  | #endif  | ||||||
|  |  | ||||||
|  |   void * ret = NULL; | ||||||
|  |   int v = -1; | ||||||
|  |  | ||||||
|  |   for(int e=0;e<ncache;e++) { | ||||||
|  |     if ( entries[e].valid==0 ) { | ||||||
|  |       v=e;  | ||||||
|  |       break; | ||||||
|  |     } | ||||||
|  |   } | ||||||
|  |  | ||||||
|  |   if ( v==-1 ) { | ||||||
|  |     v=victim; | ||||||
|  |     victim = (victim+1)%ncache; | ||||||
|  |   } | ||||||
|  |  | ||||||
|  |   if ( entries[v].valid ) { | ||||||
|  |     ret = entries[v].address; | ||||||
|  |     cacheBytes -= entries[v].bytes; | ||||||
|  |     entries[v].valid = 0; | ||||||
|  |     entries[v].address = NULL; | ||||||
|  |     entries[v].bytes = 0; | ||||||
|  |   } | ||||||
|  |  | ||||||
|  |   entries[v].address=ptr; | ||||||
|  |   entries[v].bytes  =bytes; | ||||||
|  |   entries[v].valid  =1; | ||||||
|  |   cacheBytes += bytes; | ||||||
|  |  | ||||||
|  |   return ret; | ||||||
|  | } | ||||||
|  |  | ||||||
|  | void *MemoryManager::Lookup(size_t bytes,int type) | ||||||
|  | { | ||||||
|  | #ifdef ALLOCATION_CACHE | ||||||
|  |   bool small = (bytes < GRID_ALLOC_SMALL_LIMIT); | ||||||
|  |   int cache = type+small; | ||||||
|  |   return Lookup(bytes,Entries[cache],Ncache[cache],CacheBytes[cache]); | ||||||
|  | #else | ||||||
|  |   return NULL; | ||||||
|  | #endif | ||||||
|  | } | ||||||
|  |  | ||||||
|  | void *MemoryManager::Lookup(size_t bytes,AllocationCacheEntry *entries,int ncache,uint64_t & cacheBytes)  | ||||||
|  | { | ||||||
|  |   assert(ncache>0); | ||||||
|  | #ifdef GRID_OMP | ||||||
|  |   assert(omp_in_parallel()==0); | ||||||
|  | #endif  | ||||||
|  |   for(int e=0;e<ncache;e++){ | ||||||
|  |     if ( entries[e].valid && ( entries[e].bytes == bytes ) ) { | ||||||
|  |       entries[e].valid = 0; | ||||||
|  |       cacheBytes -= entries[e].bytes; | ||||||
|  |       return entries[e].address; | ||||||
|  |     } | ||||||
|  |   } | ||||||
|  |   return NULL; | ||||||
|  | } | ||||||
|  |  | ||||||
|  |  | ||||||
|  | NAMESPACE_END(Grid); | ||||||
|  |  | ||||||
							
								
								
									
										182
									
								
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							| @@ -0,0 +1,182 @@ | |||||||
|  | /************************************************************************************* | ||||||
|  |  | ||||||
|  |     Grid physics library, www.github.com/paboyle/Grid  | ||||||
|  |  | ||||||
|  |     Source file: ./lib/MemoryManager.h | ||||||
|  |  | ||||||
|  |     Copyright (C) 2015 | ||||||
|  |  | ||||||
|  | Author: Azusa Yamaguchi <ayamaguc@staffmail.ed.ac.uk> | ||||||
|  | Author: Peter Boyle <paboyle@ph.ed.ac.uk> | ||||||
|  |  | ||||||
|  |     This program is free software; you can redistribute it and/or modify | ||||||
|  |     it under the terms of the GNU General Public License as published by | ||||||
|  |     the Free Software Foundation; either version 2 of the License, or | ||||||
|  |     (at your option) any later version. | ||||||
|  |  | ||||||
|  |     This program is distributed in the hope that it will be useful, | ||||||
|  |     but WITHOUT ANY WARRANTY; without even the implied warranty of | ||||||
|  |     MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the | ||||||
|  |     GNU General Public License for more details. | ||||||
|  |  | ||||||
|  |     You should have received a copy of the GNU General Public License along | ||||||
|  |     with this program; if not, write to the Free Software Foundation, Inc., | ||||||
|  |     51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. | ||||||
|  |  | ||||||
|  |     See the full license in the file "LICENSE" in the top level distribution directory | ||||||
|  | *************************************************************************************/ | ||||||
|  | /*  END LEGAL */ | ||||||
|  | #pragma once | ||||||
|  | #include <list>  | ||||||
|  | #include <unordered_map>   | ||||||
|  |  | ||||||
|  | NAMESPACE_BEGIN(Grid); | ||||||
|  |  | ||||||
|  | // Move control to configure.ac and Config.h? | ||||||
|  |  | ||||||
|  | #define GRID_ALLOC_SMALL_LIMIT (4096) | ||||||
|  |  | ||||||
|  | /*Pinning pages is costly*/ | ||||||
|  | //////////////////////////////////////////////////////////////////////////// | ||||||
|  | // Advise the LatticeAccelerator class | ||||||
|  | //////////////////////////////////////////////////////////////////////////// | ||||||
|  | enum ViewAdvise { | ||||||
|  |  AdviseDefault       = 0x0,    // Regular data | ||||||
|  |  AdviseInfrequentUse = 0x1     // Advise that the data is used infrequently.  This can | ||||||
|  |                                // significantly influence performance of bulk storage. | ||||||
|  |   | ||||||
|  |  // AdviseTransient      = 0x2,   // Data will mostly be read.  On some architectures | ||||||
|  |                                // enables read-only copies of memory to be kept on | ||||||
|  |                                // host and device. | ||||||
|  |  | ||||||
|  |  // AdviseAcceleratorWriteDiscard = 0x4  // Field will be written in entirety on device | ||||||
|  |  | ||||||
|  | }; | ||||||
|  |  | ||||||
|  | //////////////////////////////////////////////////////////////////////////// | ||||||
|  | // View Access Mode | ||||||
|  | //////////////////////////////////////////////////////////////////////////// | ||||||
|  | enum ViewMode { | ||||||
|  |   AcceleratorRead  = 0x01, | ||||||
|  |   AcceleratorWrite = 0x02, | ||||||
|  |   AcceleratorWriteDiscard = 0x04, | ||||||
|  |   CpuRead  = 0x08, | ||||||
|  |   CpuWrite = 0x10, | ||||||
|  |   CpuWriteDiscard = 0x10 // same for now | ||||||
|  | }; | ||||||
|  |  | ||||||
|  | class MemoryManager { | ||||||
|  | private: | ||||||
|  |  | ||||||
|  |   //////////////////////////////////////////////////////////// | ||||||
|  |   // For caching recently freed allocations | ||||||
|  |   //////////////////////////////////////////////////////////// | ||||||
|  |   typedef struct {  | ||||||
|  |     void *address; | ||||||
|  |     size_t bytes; | ||||||
|  |     int valid; | ||||||
|  |   } AllocationCacheEntry; | ||||||
|  |  | ||||||
|  |   static const int NallocCacheMax=128;  | ||||||
|  |   static const int NallocType=6; | ||||||
|  |   static AllocationCacheEntry Entries[NallocType][NallocCacheMax]; | ||||||
|  |   static int Victim[NallocType]; | ||||||
|  |   static int Ncache[NallocType]; | ||||||
|  |   static uint64_t CacheBytes[NallocType]; | ||||||
|  |  | ||||||
|  |   ///////////////////////////////////////////////// | ||||||
|  |   // Free pool | ||||||
|  |   ///////////////////////////////////////////////// | ||||||
|  |   static void *Insert(void *ptr,size_t bytes,int type) ; | ||||||
|  |   static void *Lookup(size_t bytes,int type) ; | ||||||
|  |   static void *Insert(void *ptr,size_t bytes,AllocationCacheEntry *entries,int ncache,int &victim,uint64_t &cbytes) ; | ||||||
|  |   static void *Lookup(size_t bytes,AllocationCacheEntry *entries,int ncache,uint64_t &cbytes) ; | ||||||
|  |  | ||||||
|  |   static void PrintBytes(void); | ||||||
|  |  public: | ||||||
|  |   static void Init(void); | ||||||
|  |   static void InitMessage(void); | ||||||
|  |   static void *AcceleratorAllocate(size_t bytes); | ||||||
|  |   static void  AcceleratorFree    (void *ptr,size_t bytes); | ||||||
|  |   static void *SharedAllocate(size_t bytes); | ||||||
|  |   static void  SharedFree    (void *ptr,size_t bytes); | ||||||
|  |   static void *CpuAllocate(size_t bytes); | ||||||
|  |   static void  CpuFree    (void *ptr,size_t bytes); | ||||||
|  |  | ||||||
|  |   //////////////////////////////////////////////////////// | ||||||
|  |   // Footprint tracking | ||||||
|  |   //////////////////////////////////////////////////////// | ||||||
|  |   static uint64_t     DeviceBytes; | ||||||
|  |   static uint64_t     DeviceLRUBytes; | ||||||
|  |   static uint64_t     DeviceMaxBytes; | ||||||
|  |   static uint64_t     HostToDeviceBytes; | ||||||
|  |   static uint64_t     DeviceToHostBytes; | ||||||
|  |   static uint64_t     HostToDeviceXfer; | ||||||
|  |   static uint64_t     DeviceToHostXfer; | ||||||
|  |   | ||||||
|  |  private: | ||||||
|  | #ifndef GRID_UVM | ||||||
|  |   ////////////////////////////////////////////////////////////////////// | ||||||
|  |   // Data tables for ViewCache | ||||||
|  |   ////////////////////////////////////////////////////////////////////// | ||||||
|  |   typedef std::list<uint64_t> LRU_t; | ||||||
|  |   typedef typename LRU_t::iterator LRUiterator; | ||||||
|  |   typedef struct {  | ||||||
|  |     int        LRU_valid; | ||||||
|  |     LRUiterator LRU_entry; | ||||||
|  |     uint64_t CpuPtr; | ||||||
|  |     uint64_t AccPtr; | ||||||
|  |     size_t   bytes; | ||||||
|  |     uint32_t transient; | ||||||
|  |     uint32_t state; | ||||||
|  |     uint32_t accLock; | ||||||
|  |     uint32_t cpuLock; | ||||||
|  |   } AcceleratorViewEntry; | ||||||
|  |    | ||||||
|  |   typedef std::unordered_map<uint64_t,AcceleratorViewEntry> AccViewTable_t; | ||||||
|  |   typedef typename AccViewTable_t::iterator AccViewTableIterator ; | ||||||
|  |  | ||||||
|  |   static AccViewTable_t AccViewTable; | ||||||
|  |   static LRU_t LRU; | ||||||
|  |  | ||||||
|  |   ///////////////////////////////////////////////// | ||||||
|  |   // Device motion | ||||||
|  |   ///////////////////////////////////////////////// | ||||||
|  |   static void  Create(uint64_t CpuPtr,size_t bytes,ViewMode mode,ViewAdvise hint); | ||||||
|  |   static void  EvictVictims(uint64_t bytes); // Frees up <bytes> | ||||||
|  |   static void  Evict(AcceleratorViewEntry &AccCache); | ||||||
|  |   static void  Flush(AcceleratorViewEntry &AccCache); | ||||||
|  |   static void  Clone(AcceleratorViewEntry &AccCache); | ||||||
|  |   static void  AccDiscard(AcceleratorViewEntry &AccCache); | ||||||
|  |   static void  CpuDiscard(AcceleratorViewEntry &AccCache); | ||||||
|  |  | ||||||
|  |   //  static void  LRUupdate(AcceleratorViewEntry &AccCache); | ||||||
|  |   static void  LRUinsert(AcceleratorViewEntry &AccCache); | ||||||
|  |   static void  LRUremove(AcceleratorViewEntry &AccCache); | ||||||
|  |    | ||||||
|  |   // manage entries in the table | ||||||
|  |   static int                  EntryPresent(uint64_t CpuPtr); | ||||||
|  |   static void                 EntryCreate(uint64_t CpuPtr,size_t bytes,ViewMode mode,ViewAdvise hint); | ||||||
|  |   static void                 EntryErase (uint64_t CpuPtr); | ||||||
|  |   static AccViewTableIterator EntryLookup(uint64_t CpuPtr); | ||||||
|  |   static void                 EntrySet   (uint64_t CpuPtr,AcceleratorViewEntry &entry); | ||||||
|  |  | ||||||
|  |   static void     AcceleratorViewClose(uint64_t AccPtr); | ||||||
|  |   static uint64_t AcceleratorViewOpen(uint64_t  CpuPtr,size_t bytes,ViewMode mode,ViewAdvise hint); | ||||||
|  |   static void     CpuViewClose(uint64_t Ptr); | ||||||
|  |   static uint64_t CpuViewOpen(uint64_t  CpuPtr,size_t bytes,ViewMode mode,ViewAdvise hint); | ||||||
|  | #endif | ||||||
|  |   static void NotifyDeletion(void * CpuPtr); | ||||||
|  |  | ||||||
|  |  public: | ||||||
|  |   static void Print(void); | ||||||
|  |   static void PrintState( void* CpuPtr); | ||||||
|  |   static int   isOpen   (void* CpuPtr); | ||||||
|  |   static void  ViewClose(void* CpuPtr,ViewMode mode); | ||||||
|  |   static void *ViewOpen (void* CpuPtr,size_t bytes,ViewMode mode,ViewAdvise hint); | ||||||
|  |  | ||||||
|  | }; | ||||||
|  |  | ||||||
|  | NAMESPACE_END(Grid); | ||||||
|  |  | ||||||
|  |  | ||||||
							
								
								
									
										505
									
								
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							| @@ -0,0 +1,505 @@ | |||||||
|  | #include <Grid/GridCore.h> | ||||||
|  | #ifndef GRID_UVM | ||||||
|  |  | ||||||
|  | #warning "Using explicit device memory copies" | ||||||
|  | NAMESPACE_BEGIN(Grid); | ||||||
|  | //#define dprintf(...) printf ( __VA_ARGS__ ); fflush(stdout); | ||||||
|  | #define dprintf(...) | ||||||
|  |  | ||||||
|  |  | ||||||
|  | //////////////////////////////////////////////////////////// | ||||||
|  | // For caching copies of data on device | ||||||
|  | //////////////////////////////////////////////////////////// | ||||||
|  | MemoryManager::AccViewTable_t MemoryManager::AccViewTable; | ||||||
|  | MemoryManager::LRU_t MemoryManager::LRU; | ||||||
|  |    | ||||||
|  | //////////////////////////////////////////////////////// | ||||||
|  | // Footprint tracking | ||||||
|  | //////////////////////////////////////////////////////// | ||||||
|  | uint64_t  MemoryManager::DeviceBytes; | ||||||
|  | uint64_t  MemoryManager::DeviceLRUBytes; | ||||||
|  | uint64_t  MemoryManager::DeviceMaxBytes = 1024*1024*128; | ||||||
|  | uint64_t  MemoryManager::HostToDeviceBytes; | ||||||
|  | uint64_t  MemoryManager::DeviceToHostBytes; | ||||||
|  | uint64_t  MemoryManager::HostToDeviceXfer; | ||||||
|  | uint64_t  MemoryManager::DeviceToHostXfer; | ||||||
|  |  | ||||||
|  | //////////////////////////////////// | ||||||
|  | // Priority ordering for unlocked entries | ||||||
|  | //  Empty | ||||||
|  | //  CpuDirty  | ||||||
|  | //  Consistent | ||||||
|  | //  AccDirty | ||||||
|  | //////////////////////////////////// | ||||||
|  | #define Empty         (0x0)  /*Entry unoccupied  */ | ||||||
|  | #define CpuDirty      (0x1)  /*CPU copy is golden, Acc buffer MAY not be allocated*/ | ||||||
|  | #define Consistent    (0x2)  /*ACC copy AND CPU copy are valid */ | ||||||
|  | #define AccDirty      (0x4)  /*ACC copy is golden */ | ||||||
|  | #define EvictNext     (0x8)  /*Priority for eviction*/ | ||||||
|  |  | ||||||
|  | ///////////////////////////////////////////////// | ||||||
|  | // Mechanics of data table maintenance | ||||||
|  | ///////////////////////////////////////////////// | ||||||
|  | int   MemoryManager::EntryPresent(uint64_t CpuPtr) | ||||||
|  | { | ||||||
|  |   if(AccViewTable.empty()) return 0; | ||||||
|  |  | ||||||
|  |   auto count = AccViewTable.count(CpuPtr);  assert((count==0)||(count==1)); | ||||||
|  |   return count; | ||||||
|  | } | ||||||
|  | void  MemoryManager::EntryCreate(uint64_t CpuPtr,size_t bytes,ViewMode mode,ViewAdvise hint) | ||||||
|  | { | ||||||
|  |   assert(!EntryPresent(CpuPtr)); | ||||||
|  |   AcceleratorViewEntry AccCache; | ||||||
|  |   AccCache.CpuPtr = CpuPtr; | ||||||
|  |   AccCache.AccPtr = (uint64_t)NULL; | ||||||
|  |   AccCache.bytes  = bytes; | ||||||
|  |   AccCache.state  = CpuDirty; | ||||||
|  |   AccCache.LRU_valid=0; | ||||||
|  |   AccCache.transient=0; | ||||||
|  |   AccCache.accLock=0; | ||||||
|  |   AccCache.cpuLock=0; | ||||||
|  |   AccViewTable[CpuPtr] = AccCache; | ||||||
|  | } | ||||||
|  | MemoryManager::AccViewTableIterator MemoryManager::EntryLookup(uint64_t CpuPtr) | ||||||
|  | { | ||||||
|  |   assert(EntryPresent(CpuPtr)); | ||||||
|  |   auto AccCacheIterator = AccViewTable.find(CpuPtr); | ||||||
|  |   assert(AccCacheIterator!=AccViewTable.end()); | ||||||
|  |   return AccCacheIterator; | ||||||
|  | } | ||||||
|  | void MemoryManager::EntryErase(uint64_t CpuPtr) | ||||||
|  | { | ||||||
|  |   auto AccCache = EntryLookup(CpuPtr); | ||||||
|  |   AccViewTable.erase(CpuPtr); | ||||||
|  | } | ||||||
|  | void  MemoryManager::LRUinsert(AcceleratorViewEntry &AccCache) | ||||||
|  | { | ||||||
|  |   assert(AccCache.LRU_valid==0); | ||||||
|  |   if (AccCache.transient) {  | ||||||
|  |     LRU.push_back(AccCache.CpuPtr); | ||||||
|  |     AccCache.LRU_entry = --LRU.end(); | ||||||
|  |   } else { | ||||||
|  |     LRU.push_front(AccCache.CpuPtr); | ||||||
|  |     AccCache.LRU_entry = LRU.begin(); | ||||||
|  |   } | ||||||
|  |   AccCache.LRU_valid = 1; | ||||||
|  |   DeviceLRUBytes+=AccCache.bytes; | ||||||
|  | } | ||||||
|  | void  MemoryManager::LRUremove(AcceleratorViewEntry &AccCache) | ||||||
|  | { | ||||||
|  |   assert(AccCache.LRU_valid==1); | ||||||
|  |   LRU.erase(AccCache.LRU_entry); | ||||||
|  |   AccCache.LRU_valid = 0; | ||||||
|  |   DeviceLRUBytes-=AccCache.bytes; | ||||||
|  | } | ||||||
|  | ///////////////////////////////////////////////// | ||||||
|  | // Accelerator cache motion & consistency logic | ||||||
|  | ///////////////////////////////////////////////// | ||||||
|  | void MemoryManager::AccDiscard(AcceleratorViewEntry &AccCache) | ||||||
|  | { | ||||||
|  |   /////////////////////////////////////////////////////////// | ||||||
|  |   // Remove from Accelerator, remove entry, without flush | ||||||
|  |   // Cannot be locked. If allocated Must be in LRU pool. | ||||||
|  |   /////////////////////////////////////////////////////////// | ||||||
|  |   assert(AccCache.state!=Empty); | ||||||
|  |    | ||||||
|  |    dprintf("MemoryManager: Discard(%llx) %llx\n",(uint64_t)AccCache.CpuPtr,(uint64_t)AccCache.AccPtr);  | ||||||
|  |   assert(AccCache.accLock==0); | ||||||
|  |   assert(AccCache.cpuLock==0); | ||||||
|  |   assert(AccCache.CpuPtr!=(uint64_t)NULL); | ||||||
|  |   if(AccCache.AccPtr) { | ||||||
|  |     AcceleratorFree((void *)AccCache.AccPtr,AccCache.bytes); | ||||||
|  |     DeviceBytes   -=AccCache.bytes; | ||||||
|  |     LRUremove(AccCache); | ||||||
|  |     dprintf("MemoryManager: Free(%llx) LRU %lld Total %lld\n",(uint64_t)AccCache.AccPtr,DeviceLRUBytes,DeviceBytes);   | ||||||
|  |   } | ||||||
|  |   uint64_t CpuPtr = AccCache.CpuPtr; | ||||||
|  |   EntryErase(CpuPtr); | ||||||
|  | } | ||||||
|  |  | ||||||
|  | void MemoryManager::Evict(AcceleratorViewEntry &AccCache) | ||||||
|  | { | ||||||
|  |   /////////////////////////////////////////////////////////////////////////// | ||||||
|  |   // Make CPU consistent, remove from Accelerator, remove entry | ||||||
|  |   // Cannot be locked. If allocated must be in LRU pool. | ||||||
|  |   /////////////////////////////////////////////////////////////////////////// | ||||||
|  |   assert(AccCache.state!=Empty); | ||||||
|  |    | ||||||
|  |   dprintf("MemoryManager: Evict(%llx) %llx\n",(uint64_t)AccCache.CpuPtr,(uint64_t)AccCache.AccPtr);  | ||||||
|  |   assert(AccCache.accLock==0); | ||||||
|  |   assert(AccCache.cpuLock==0); | ||||||
|  |   if(AccCache.state==AccDirty) { | ||||||
|  |     Flush(AccCache); | ||||||
|  |   } | ||||||
|  |   assert(AccCache.CpuPtr!=(uint64_t)NULL); | ||||||
|  |   if(AccCache.AccPtr) { | ||||||
|  |     AcceleratorFree((void *)AccCache.AccPtr,AccCache.bytes); | ||||||
|  |     DeviceBytes   -=AccCache.bytes; | ||||||
|  |     LRUremove(AccCache); | ||||||
|  |     dprintf("MemoryManager: Free(%llx) footprint now %lld \n",(uint64_t)AccCache.AccPtr,DeviceBytes);   | ||||||
|  |   } | ||||||
|  |   uint64_t CpuPtr = AccCache.CpuPtr; | ||||||
|  |   EntryErase(CpuPtr); | ||||||
|  | } | ||||||
|  | void MemoryManager::Flush(AcceleratorViewEntry &AccCache) | ||||||
|  | { | ||||||
|  |   assert(AccCache.state==AccDirty); | ||||||
|  |   assert(AccCache.cpuLock==0); | ||||||
|  |   assert(AccCache.accLock==0); | ||||||
|  |   assert(AccCache.AccPtr!=(uint64_t)NULL); | ||||||
|  |   assert(AccCache.CpuPtr!=(uint64_t)NULL); | ||||||
|  |   acceleratorCopyFromDevice((void *)AccCache.AccPtr,(void *)AccCache.CpuPtr,AccCache.bytes); | ||||||
|  |   dprintf("MemoryManager: Flush  %llx -> %llx\n",(uint64_t)AccCache.AccPtr,(uint64_t)AccCache.CpuPtr); fflush(stdout); | ||||||
|  |   DeviceToHostBytes+=AccCache.bytes; | ||||||
|  |   DeviceToHostXfer++; | ||||||
|  |   AccCache.state=Consistent; | ||||||
|  | } | ||||||
|  | void MemoryManager::Clone(AcceleratorViewEntry &AccCache) | ||||||
|  | { | ||||||
|  |   assert(AccCache.state==CpuDirty); | ||||||
|  |   assert(AccCache.cpuLock==0); | ||||||
|  |   assert(AccCache.accLock==0); | ||||||
|  |   assert(AccCache.CpuPtr!=(uint64_t)NULL); | ||||||
|  |   if(AccCache.AccPtr==(uint64_t)NULL){ | ||||||
|  |     AccCache.AccPtr=(uint64_t)AcceleratorAllocate(AccCache.bytes); | ||||||
|  |     DeviceBytes+=AccCache.bytes; | ||||||
|  |   } | ||||||
|  |   dprintf("MemoryManager: Clone %llx <- %llx\n",(uint64_t)AccCache.AccPtr,(uint64_t)AccCache.CpuPtr); fflush(stdout); | ||||||
|  |   acceleratorCopyToDevice((void *)AccCache.CpuPtr,(void *)AccCache.AccPtr,AccCache.bytes); | ||||||
|  |   HostToDeviceBytes+=AccCache.bytes; | ||||||
|  |   HostToDeviceXfer++; | ||||||
|  |   AccCache.state=Consistent; | ||||||
|  | } | ||||||
|  |  | ||||||
|  | void MemoryManager::CpuDiscard(AcceleratorViewEntry &AccCache) | ||||||
|  | { | ||||||
|  |   assert(AccCache.state!=Empty); | ||||||
|  |   assert(AccCache.cpuLock==0); | ||||||
|  |   assert(AccCache.accLock==0); | ||||||
|  |   assert(AccCache.CpuPtr!=(uint64_t)NULL); | ||||||
|  |   if(AccCache.AccPtr==(uint64_t)NULL){ | ||||||
|  |     AccCache.AccPtr=(uint64_t)AcceleratorAllocate(AccCache.bytes); | ||||||
|  |     DeviceBytes+=AccCache.bytes; | ||||||
|  |   } | ||||||
|  |   AccCache.state=AccDirty; | ||||||
|  | } | ||||||
|  |  | ||||||
|  | ///////////////////////////////////////////////////////////////////////////////// | ||||||
|  | // View management | ||||||
|  | ///////////////////////////////////////////////////////////////////////////////// | ||||||
|  | void MemoryManager::ViewClose(void* Ptr,ViewMode mode) | ||||||
|  | { | ||||||
|  |   if( (mode==AcceleratorRead)||(mode==AcceleratorWrite)||(mode==AcceleratorWriteDiscard) ){ | ||||||
|  |     AcceleratorViewClose((uint64_t)Ptr); | ||||||
|  |   } else if( (mode==CpuRead)||(mode==CpuWrite)){ | ||||||
|  |     CpuViewClose((uint64_t)Ptr); | ||||||
|  |   } else {  | ||||||
|  |     assert(0); | ||||||
|  |   } | ||||||
|  | } | ||||||
|  | void *MemoryManager::ViewOpen(void* _CpuPtr,size_t bytes,ViewMode mode,ViewAdvise hint) | ||||||
|  | { | ||||||
|  |   uint64_t CpuPtr = (uint64_t)_CpuPtr; | ||||||
|  |   if( (mode==AcceleratorRead)||(mode==AcceleratorWrite)||(mode==AcceleratorWriteDiscard) ){ | ||||||
|  |     return (void *) AcceleratorViewOpen(CpuPtr,bytes,mode,hint); | ||||||
|  |   } else if( (mode==CpuRead)||(mode==CpuWrite)){ | ||||||
|  |     return (void *)CpuViewOpen(CpuPtr,bytes,mode,hint); | ||||||
|  |   } else {  | ||||||
|  |     assert(0); | ||||||
|  |     return NULL; | ||||||
|  |   } | ||||||
|  | } | ||||||
|  | void  MemoryManager::EvictVictims(uint64_t bytes) | ||||||
|  | { | ||||||
|  |   while(bytes+DeviceLRUBytes > DeviceMaxBytes){ | ||||||
|  |     if ( DeviceLRUBytes > 0){ | ||||||
|  |       assert(LRU.size()>0); | ||||||
|  |       uint64_t victim = LRU.back(); | ||||||
|  |       auto AccCacheIterator = EntryLookup(victim); | ||||||
|  |       auto & AccCache = AccCacheIterator->second; | ||||||
|  |       Evict(AccCache); | ||||||
|  |     } | ||||||
|  |   } | ||||||
|  | } | ||||||
|  | uint64_t MemoryManager::AcceleratorViewOpen(uint64_t CpuPtr,size_t bytes,ViewMode mode,ViewAdvise hint) | ||||||
|  | { | ||||||
|  |   //////////////////////////////////////////////////////////////////////////// | ||||||
|  |   // Find if present, otherwise get or force an empty | ||||||
|  |   //////////////////////////////////////////////////////////////////////////// | ||||||
|  |   if ( EntryPresent(CpuPtr)==0 ){ | ||||||
|  |     EntryCreate(CpuPtr,bytes,mode,hint); | ||||||
|  |   } | ||||||
|  |  | ||||||
|  |   auto AccCacheIterator = EntryLookup(CpuPtr); | ||||||
|  |   auto & AccCache = AccCacheIterator->second; | ||||||
|  |   if (!AccCache.AccPtr) { | ||||||
|  |     EvictVictims(bytes);  | ||||||
|  |   }  | ||||||
|  |   assert((mode==AcceleratorRead)||(mode==AcceleratorWrite)||(mode==AcceleratorWriteDiscard)); | ||||||
|  |  | ||||||
|  |   assert(AccCache.cpuLock==0);  // Programming error | ||||||
|  |  | ||||||
|  |   if(AccCache.state!=Empty) { | ||||||
|  |     dprintf("ViewOpen found entry %llx %llx : %lld %lld\n", | ||||||
|  | 		    (uint64_t)AccCache.CpuPtr, | ||||||
|  | 		    (uint64_t)CpuPtr, | ||||||
|  | 		    (uint64_t)AccCache.bytes, | ||||||
|  | 		    (uint64_t)bytes); | ||||||
|  |     assert(AccCache.CpuPtr == CpuPtr); | ||||||
|  |     assert(AccCache.bytes  ==bytes); | ||||||
|  |   } | ||||||
|  | /* | ||||||
|  |  *  State transitions and actions | ||||||
|  |  * | ||||||
|  |  *  Action  State   StateNext         Flush    Clone | ||||||
|  |  * | ||||||
|  |  *  AccRead  Empty   Consistent        -        Y | ||||||
|  |  *  AccWrite Empty   AccDirty          -        Y | ||||||
|  |  *  AccRead  CpuDirty Consistent       -        Y | ||||||
|  |  *  AccWrite CpuDirty AccDirty         -        Y | ||||||
|  |  *  AccRead  Consistent Consistent     -        -  | ||||||
|  |  *  AccWrite Consistent AccDirty       -        -  | ||||||
|  |  *  AccRead  AccDirty   AccDirty       -        -  | ||||||
|  |  *  AccWrite AccDirty   AccDirty       -        -  | ||||||
|  |  */ | ||||||
|  |   if(AccCache.state==Empty) { | ||||||
|  |     assert(AccCache.LRU_valid==0); | ||||||
|  |     AccCache.CpuPtr = CpuPtr; | ||||||
|  |     AccCache.AccPtr = (uint64_t)NULL; | ||||||
|  |     AccCache.bytes  = bytes; | ||||||
|  |     AccCache.state  = CpuDirty;   // Cpu starts primary | ||||||
|  |     if(mode==AcceleratorWriteDiscard){ | ||||||
|  |       CpuDiscard(AccCache); | ||||||
|  |       AccCache.state  = AccDirty;   // Empty + AcceleratorWrite=> AccDirty | ||||||
|  |     } else if(mode==AcceleratorWrite){ | ||||||
|  |       Clone(AccCache); | ||||||
|  |       AccCache.state  = AccDirty;   // Empty + AcceleratorWrite=> AccDirty | ||||||
|  |     } else { | ||||||
|  |       Clone(AccCache); | ||||||
|  |       AccCache.state  = Consistent; // Empty + AccRead => Consistent | ||||||
|  |     } | ||||||
|  |     AccCache.accLock= 1; | ||||||
|  |   } else if(AccCache.state==CpuDirty ){ | ||||||
|  |     if(mode==AcceleratorWriteDiscard) { | ||||||
|  |       CpuDiscard(AccCache); | ||||||
|  |       AccCache.state  = AccDirty;   // CpuDirty + AcceleratorWrite=> AccDirty | ||||||
|  |     } else if(mode==AcceleratorWrite) { | ||||||
|  |       Clone(AccCache); | ||||||
|  |       AccCache.state  = AccDirty;   // CpuDirty + AcceleratorWrite=> AccDirty | ||||||
|  |     } else { | ||||||
|  |       Clone(AccCache); | ||||||
|  |       AccCache.state  = Consistent; // CpuDirty + AccRead => Consistent | ||||||
|  |     } | ||||||
|  |     AccCache.accLock++; | ||||||
|  |     dprintf("Copied CpuDirty entry into device accLock %d\n",AccCache.accLock); | ||||||
|  |   } else if(AccCache.state==Consistent) { | ||||||
|  |     if((mode==AcceleratorWrite)||(mode==AcceleratorWriteDiscard)) | ||||||
|  |       AccCache.state  = AccDirty;   // Consistent + AcceleratorWrite=> AccDirty | ||||||
|  |     else | ||||||
|  |       AccCache.state  = Consistent; // Consistent + AccRead => Consistent | ||||||
|  |     AccCache.accLock++; | ||||||
|  |     dprintf("Consistent entry into device accLock %d\n",AccCache.accLock); | ||||||
|  |   } else if(AccCache.state==AccDirty) { | ||||||
|  |     if((mode==AcceleratorWrite)||(mode==AcceleratorWriteDiscard)) | ||||||
|  |       AccCache.state  = AccDirty; // AccDirty + AcceleratorWrite=> AccDirty | ||||||
|  |     else | ||||||
|  |       AccCache.state  = AccDirty; // AccDirty + AccRead => AccDirty | ||||||
|  |     AccCache.accLock++; | ||||||
|  |     dprintf("AccDirty entry into device accLock %d\n",AccCache.accLock); | ||||||
|  |   } else { | ||||||
|  |     assert(0); | ||||||
|  |   } | ||||||
|  |  | ||||||
|  |   // If view is opened on device remove from LRU | ||||||
|  |   if(AccCache.LRU_valid==1){ | ||||||
|  |     // must possibly remove from LRU as now locked on GPU | ||||||
|  |     LRUremove(AccCache); | ||||||
|  |   } | ||||||
|  |  | ||||||
|  |   int transient =hint; | ||||||
|  |   AccCache.transient= transient? EvictNext : 0; | ||||||
|  |  | ||||||
|  |   return AccCache.AccPtr; | ||||||
|  | } | ||||||
|  | //////////////////////////////////// | ||||||
|  | // look up & decrement lock count | ||||||
|  | //////////////////////////////////// | ||||||
|  | void MemoryManager::AcceleratorViewClose(uint64_t CpuPtr) | ||||||
|  | { | ||||||
|  |   auto AccCacheIterator = EntryLookup(CpuPtr); | ||||||
|  |   auto & AccCache = AccCacheIterator->second; | ||||||
|  |  | ||||||
|  |   assert(AccCache.cpuLock==0); | ||||||
|  |   assert(AccCache.accLock>0); | ||||||
|  |  | ||||||
|  |   AccCache.accLock--; | ||||||
|  |  | ||||||
|  |   // Move to LRU queue if not locked and close on device | ||||||
|  |   if(AccCache.accLock==0) { | ||||||
|  |     LRUinsert(AccCache); | ||||||
|  |   } | ||||||
|  | } | ||||||
|  | void MemoryManager::CpuViewClose(uint64_t CpuPtr) | ||||||
|  | { | ||||||
|  |   auto AccCacheIterator = EntryLookup(CpuPtr); | ||||||
|  |   auto & AccCache = AccCacheIterator->second; | ||||||
|  |  | ||||||
|  |   assert(AccCache.cpuLock>0); | ||||||
|  |   assert(AccCache.accLock==0); | ||||||
|  |  | ||||||
|  |   AccCache.cpuLock--; | ||||||
|  | } | ||||||
|  | /* | ||||||
|  |  *  Action  State   StateNext         Flush    Clone | ||||||
|  |  * | ||||||
|  |  *  CpuRead  Empty   CpuDirty          -        - | ||||||
|  |  *  CpuWrite Empty   CpuDirty          -        - | ||||||
|  |  *  CpuRead  CpuDirty CpuDirty         -        - | ||||||
|  |  *  CpuWrite CpuDirty CpuDirty         -        -  | ||||||
|  |  *  CpuRead  Consistent Consistent     -        -  | ||||||
|  |  *  CpuWrite Consistent CpuDirty       -        -  | ||||||
|  |  *  CpuRead  AccDirty   Consistent     Y        - | ||||||
|  |  *  CpuWrite AccDirty   CpuDirty       Y        - | ||||||
|  |  */ | ||||||
|  | uint64_t MemoryManager::CpuViewOpen(uint64_t CpuPtr,size_t bytes,ViewMode mode,ViewAdvise transient) | ||||||
|  | { | ||||||
|  |   //////////////////////////////////////////////////////////////////////////// | ||||||
|  |   // Find if present, otherwise get or force an empty | ||||||
|  |   //////////////////////////////////////////////////////////////////////////// | ||||||
|  |   if ( EntryPresent(CpuPtr)==0 ){ | ||||||
|  |     EntryCreate(CpuPtr,bytes,mode,transient); | ||||||
|  |   } | ||||||
|  |  | ||||||
|  |   auto AccCacheIterator = EntryLookup(CpuPtr); | ||||||
|  |   auto & AccCache = AccCacheIterator->second; | ||||||
|  |  | ||||||
|  |   if (!AccCache.AccPtr) { | ||||||
|  |      EvictVictims(bytes); | ||||||
|  |   } | ||||||
|  |  | ||||||
|  |   assert((mode==CpuRead)||(mode==CpuWrite)); | ||||||
|  |   assert(AccCache.accLock==0);  // Programming error | ||||||
|  |  | ||||||
|  |   if(AccCache.state!=Empty) { | ||||||
|  |     assert(AccCache.CpuPtr == CpuPtr); | ||||||
|  |     assert(AccCache.bytes==bytes); | ||||||
|  |   } | ||||||
|  |  | ||||||
|  |   if(AccCache.state==Empty) { | ||||||
|  |     AccCache.CpuPtr = CpuPtr; | ||||||
|  |     AccCache.AccPtr = (uint64_t)NULL; | ||||||
|  |     AccCache.bytes  = bytes; | ||||||
|  |     AccCache.state  = CpuDirty; // Empty + CpuRead/CpuWrite => CpuDirty | ||||||
|  |     AccCache.accLock= 0; | ||||||
|  |     AccCache.cpuLock= 1; | ||||||
|  |   } else if(AccCache.state==CpuDirty ){ | ||||||
|  |     // AccPtr dont care, deferred allocate | ||||||
|  |     AccCache.state = CpuDirty; // CpuDirty +CpuRead/CpuWrite => CpuDirty | ||||||
|  |     AccCache.cpuLock++; | ||||||
|  |   } else if(AccCache.state==Consistent) { | ||||||
|  |     assert(AccCache.AccPtr != (uint64_t)NULL); | ||||||
|  |     if(mode==CpuWrite) | ||||||
|  |       AccCache.state = CpuDirty;   // Consistent +CpuWrite => CpuDirty | ||||||
|  |     else  | ||||||
|  |       AccCache.state = Consistent; // Consistent +CpuRead  => Consistent | ||||||
|  |     AccCache.cpuLock++; | ||||||
|  |   } else if(AccCache.state==AccDirty) { | ||||||
|  |     assert(AccCache.AccPtr != (uint64_t)NULL); | ||||||
|  |     Flush(AccCache); | ||||||
|  |     if(mode==CpuWrite) AccCache.state = CpuDirty;   // AccDirty +CpuWrite => CpuDirty, Flush | ||||||
|  |     else            AccCache.state = Consistent; // AccDirty +CpuRead  => Consistent, Flush | ||||||
|  |     AccCache.cpuLock++; | ||||||
|  |   } else { | ||||||
|  |     assert(0); // should be unreachable | ||||||
|  |   } | ||||||
|  |  | ||||||
|  |   AccCache.transient= transient? EvictNext : 0; | ||||||
|  |  | ||||||
|  |   return AccCache.CpuPtr; | ||||||
|  | } | ||||||
|  | void  MemoryManager::NotifyDeletion(void *_ptr) | ||||||
|  | { | ||||||
|  |   // Look up in ViewCache | ||||||
|  |   uint64_t ptr = (uint64_t)_ptr; | ||||||
|  |   if(EntryPresent(ptr)) { | ||||||
|  |     auto e = EntryLookup(ptr); | ||||||
|  |     AccDiscard(e->second); | ||||||
|  |   } | ||||||
|  | } | ||||||
|  | void  MemoryManager::Print(void) | ||||||
|  | { | ||||||
|  |   PrintBytes(); | ||||||
|  |   std::cout << GridLogDebug << "--------------------------------------------" << std::endl; | ||||||
|  |   std::cout << GridLogDebug << "Memory Manager                             " << std::endl; | ||||||
|  |   std::cout << GridLogDebug << "--------------------------------------------" << std::endl; | ||||||
|  |   std::cout << GridLogDebug << DeviceBytes   << " bytes allocated on device " << std::endl; | ||||||
|  |   std::cout << GridLogDebug << DeviceLRUBytes<< " bytes evictable on device " << std::endl; | ||||||
|  |   std::cout << GridLogDebug << DeviceMaxBytes<< " bytes max on device       " << std::endl; | ||||||
|  |   std::cout << GridLogDebug << HostToDeviceXfer << " transfers        to   device " << std::endl; | ||||||
|  |   std::cout << GridLogDebug << DeviceToHostXfer << " transfers        from device " << std::endl; | ||||||
|  |   std::cout << GridLogDebug << HostToDeviceBytes<< " bytes transfered to   device " << std::endl; | ||||||
|  |   std::cout << GridLogDebug << DeviceToHostBytes<< " bytes transfered from device " << std::endl; | ||||||
|  |   std::cout << GridLogDebug << AccViewTable.size()<< " vectors " << LRU.size()<<" evictable"<< std::endl; | ||||||
|  |   std::cout << GridLogDebug << "--------------------------------------------" << std::endl; | ||||||
|  |   std::cout << GridLogDebug << "CpuAddr\t\tAccAddr\t\tState\t\tcpuLock\taccLock\tLRU_valid "<<std::endl; | ||||||
|  |   std::cout << GridLogDebug << "--------------------------------------------" << std::endl; | ||||||
|  |   for(auto it=AccViewTable.begin();it!=AccViewTable.end();it++){ | ||||||
|  |     auto &AccCache = it->second; | ||||||
|  |      | ||||||
|  |     std::string str; | ||||||
|  |     if ( AccCache.state==Empty    ) str = std::string("Empty"); | ||||||
|  |     if ( AccCache.state==CpuDirty ) str = std::string("CpuDirty"); | ||||||
|  |     if ( AccCache.state==AccDirty ) str = std::string("AccDirty"); | ||||||
|  |     if ( AccCache.state==Consistent)str = std::string("Consistent"); | ||||||
|  |  | ||||||
|  |     std::cout << GridLogDebug << "0x"<<std::hex<<AccCache.CpuPtr<<std::dec | ||||||
|  | 	      << "\t0x"<<std::hex<<AccCache.AccPtr<<std::dec<<"\t" <<str | ||||||
|  | 	      << "\t" << AccCache.cpuLock | ||||||
|  | 	      << "\t" << AccCache.accLock | ||||||
|  | 	      << "\t" << AccCache.LRU_valid<<std::endl; | ||||||
|  |   } | ||||||
|  |   std::cout << GridLogDebug << "--------------------------------------------" << std::endl; | ||||||
|  |  | ||||||
|  | }; | ||||||
|  | int   MemoryManager::isOpen   (void* _CpuPtr)  | ||||||
|  | {  | ||||||
|  |   uint64_t CpuPtr = (uint64_t)_CpuPtr; | ||||||
|  |   if ( EntryPresent(CpuPtr) ){ | ||||||
|  |     auto AccCacheIterator = EntryLookup(CpuPtr); | ||||||
|  |     auto & AccCache = AccCacheIterator->second; | ||||||
|  |     return AccCache.cpuLock+AccCache.accLock; | ||||||
|  |   } else {  | ||||||
|  |     return 0; | ||||||
|  |   } | ||||||
|  | } | ||||||
|  |  | ||||||
|  | void MemoryManager::PrintState(void* _CpuPtr) | ||||||
|  | { | ||||||
|  |   uint64_t CpuPtr = (uint64_t)_CpuPtr; | ||||||
|  |  | ||||||
|  |   if ( EntryPresent(CpuPtr) ){ | ||||||
|  |     auto AccCacheIterator = EntryLookup(CpuPtr); | ||||||
|  |     auto & AccCache = AccCacheIterator->second; | ||||||
|  |     std::string str; | ||||||
|  |     if ( AccCache.state==Empty    ) str = std::string("Empty"); | ||||||
|  |     if ( AccCache.state==CpuDirty ) str = std::string("CpuDirty"); | ||||||
|  |     if ( AccCache.state==AccDirty ) str = std::string("AccDirty"); | ||||||
|  |     if ( AccCache.state==Consistent)str = std::string("Consistent"); | ||||||
|  |     if ( AccCache.state==EvictNext) str = std::string("EvictNext"); | ||||||
|  |  | ||||||
|  |     std::cout << GridLogMessage << "CpuAddr\t\tAccAddr\t\tState\t\tcpuLock\taccLock\tLRU_valid "<<std::endl; | ||||||
|  |     std::cout << GridLogMessage << "0x"<<std::hex<<AccCache.CpuPtr<<std::dec | ||||||
|  |     << "\t0x"<<std::hex<<AccCache.AccPtr<<std::dec<<"\t" <<str | ||||||
|  |     << "\t" << AccCache.cpuLock | ||||||
|  |     << "\t" << AccCache.accLock | ||||||
|  |     << "\t" << AccCache.LRU_valid<<std::endl; | ||||||
|  |  | ||||||
|  |   } else { | ||||||
|  |     std::cout << GridLogMessage << "No Entry in AccCache table." << std::endl;  | ||||||
|  |   } | ||||||
|  | } | ||||||
|  |  | ||||||
|  | NAMESPACE_END(Grid); | ||||||
|  |  | ||||||
|  | #endif | ||||||
							
								
								
									
										27
									
								
								Grid/allocator/MemoryManagerShared.cc
									
									
									
									
									
										Normal file
									
								
							
							
						
						
									
										27
									
								
								Grid/allocator/MemoryManagerShared.cc
									
									
									
									
									
										Normal file
									
								
							| @@ -0,0 +1,27 @@ | |||||||
|  | #include <Grid/GridCore.h> | ||||||
|  | #ifdef GRID_UVM | ||||||
|  |  | ||||||
|  | NAMESPACE_BEGIN(Grid); | ||||||
|  | ///////////////////////////////////////////////////////////////////////////////// | ||||||
|  | // View management is 1:1 address space mapping | ||||||
|  | ///////////////////////////////////////////////////////////////////////////////// | ||||||
|  | uint64_t  MemoryManager::DeviceBytes; | ||||||
|  | uint64_t  MemoryManager::DeviceLRUBytes; | ||||||
|  | uint64_t  MemoryManager::DeviceMaxBytes = 1024*1024*128; | ||||||
|  | uint64_t  MemoryManager::HostToDeviceBytes; | ||||||
|  | uint64_t  MemoryManager::DeviceToHostBytes; | ||||||
|  | uint64_t  MemoryManager::HostToDeviceXfer; | ||||||
|  | uint64_t  MemoryManager::DeviceToHostXfer; | ||||||
|  |  | ||||||
|  | void  MemoryManager::ViewClose(void* AccPtr,ViewMode mode){}; | ||||||
|  | void *MemoryManager::ViewOpen(void* CpuPtr,size_t bytes,ViewMode mode,ViewAdvise hint){ return CpuPtr; }; | ||||||
|  | int   MemoryManager::isOpen   (void* CpuPtr) { return 0;} | ||||||
|  | void  MemoryManager::PrintState(void* CpuPtr) | ||||||
|  | { | ||||||
|  | std::cout << GridLogMessage << "Host<->Device memory movement not currently managed by Grid." << std::endl; | ||||||
|  | }; | ||||||
|  | void  MemoryManager::Print(void){}; | ||||||
|  | void  MemoryManager::NotifyDeletion(void *ptr){}; | ||||||
|  |  | ||||||
|  | NAMESPACE_END(Grid); | ||||||
|  | #endif | ||||||
							
								
								
									
										67
									
								
								Grid/allocator/MemoryStats.cc
									
									
									
									
									
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										67
									
								
								Grid/allocator/MemoryStats.cc
									
									
									
									
									
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							| @@ -0,0 +1,67 @@ | |||||||
|  | #include <Grid/GridCore.h> | ||||||
|  | #include <fcntl.h> | ||||||
|  |  | ||||||
|  | NAMESPACE_BEGIN(Grid); | ||||||
|  |  | ||||||
|  | MemoryStats *MemoryProfiler::stats = nullptr; | ||||||
|  | bool         MemoryProfiler::debug = false; | ||||||
|  |  | ||||||
|  | void check_huge_pages(void *Buf,uint64_t BYTES) | ||||||
|  | { | ||||||
|  | #ifdef __linux__ | ||||||
|  |   int fd = open("/proc/self/pagemap", O_RDONLY); | ||||||
|  |   assert(fd >= 0); | ||||||
|  |   const int page_size = 4096; | ||||||
|  |   uint64_t virt_pfn = (uint64_t)Buf / page_size; | ||||||
|  |   off_t offset = sizeof(uint64_t) * virt_pfn; | ||||||
|  |   uint64_t npages = (BYTES + page_size-1) / page_size; | ||||||
|  |   uint64_t pagedata[npages]; | ||||||
|  |   uint64_t ret = lseek(fd, offset, SEEK_SET); | ||||||
|  |   assert(ret == offset); | ||||||
|  |   ret = ::read(fd, pagedata, sizeof(uint64_t)*npages); | ||||||
|  |   assert(ret == sizeof(uint64_t) * npages); | ||||||
|  |   int nhugepages = npages / 512; | ||||||
|  |   int n4ktotal, nnothuge; | ||||||
|  |   n4ktotal = 0; | ||||||
|  |   nnothuge = 0; | ||||||
|  |   for (int i = 0; i < nhugepages; ++i) { | ||||||
|  |     uint64_t baseaddr = (pagedata[i*512] & 0x7fffffffffffffULL) * page_size; | ||||||
|  |     for (int j = 0; j < 512; ++j) { | ||||||
|  |       uint64_t pageaddr = (pagedata[i*512+j] & 0x7fffffffffffffULL) * page_size; | ||||||
|  |       ++n4ktotal; | ||||||
|  |       if (pageaddr != baseaddr + j * page_size) | ||||||
|  | 	++nnothuge; | ||||||
|  |     } | ||||||
|  |   } | ||||||
|  |   int rank = CartesianCommunicator::RankWorld(); | ||||||
|  |   printf("rank %d Allocated %d 4k pages, %d not in huge pages\n", rank, n4ktotal, nnothuge); | ||||||
|  | #endif | ||||||
|  | } | ||||||
|  |  | ||||||
|  | std::string sizeString(const size_t bytes) | ||||||
|  | { | ||||||
|  |   constexpr unsigned int bufSize = 256; | ||||||
|  |   const char             *suffixes[7] = {"", "K", "M", "G", "T", "P", "E"}; | ||||||
|  |   char                   buf[256]; | ||||||
|  |   size_t                 s     = 0; | ||||||
|  |   double                 count = bytes; | ||||||
|  |    | ||||||
|  |   while (count >= 1024 && s < 7) | ||||||
|  |     { | ||||||
|  |       s++; | ||||||
|  |       count /= 1024; | ||||||
|  |     } | ||||||
|  |   if (count - floor(count) == 0.0) | ||||||
|  |     { | ||||||
|  |       snprintf(buf, bufSize, "%d %sB", (int)count, suffixes[s]); | ||||||
|  |     } | ||||||
|  |   else | ||||||
|  |     { | ||||||
|  |       snprintf(buf, bufSize, "%.1f %sB", count, suffixes[s]); | ||||||
|  |     } | ||||||
|  |    | ||||||
|  |   return std::string(buf); | ||||||
|  | } | ||||||
|  |  | ||||||
|  | NAMESPACE_END(Grid); | ||||||
|  |  | ||||||
							
								
								
									
										95
									
								
								Grid/allocator/MemoryStats.h
									
									
									
									
									
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										95
									
								
								Grid/allocator/MemoryStats.h
									
									
									
									
									
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							| @@ -0,0 +1,95 @@ | |||||||
|  | /************************************************************************************* | ||||||
|  |  | ||||||
|  |     Grid physics library, www.github.com/paboyle/Grid  | ||||||
|  |  | ||||||
|  |     Source file: ./lib/MemoryStats.h | ||||||
|  |  | ||||||
|  |     Copyright (C) 2015 | ||||||
|  |  | ||||||
|  | Author: Azusa Yamaguchi <ayamaguc@staffmail.ed.ac.uk> | ||||||
|  | Author: Peter Boyle <paboyle@ph.ed.ac.uk> | ||||||
|  |  | ||||||
|  |     This program is free software; you can redistribute it and/or modify | ||||||
|  |     it under the terms of the GNU General Public License as published by | ||||||
|  |     the Free Software Foundation; either version 2 of the License, or | ||||||
|  |     (at your option) any later version. | ||||||
|  |  | ||||||
|  |     This program is distributed in the hope that it will be useful, | ||||||
|  |     but WITHOUT ANY WARRANTY; without even the implied warranty of | ||||||
|  |     MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the | ||||||
|  |     GNU General Public License for more details. | ||||||
|  |  | ||||||
|  |     You should have received a copy of the GNU General Public License along | ||||||
|  |     with this program; if not, write to the Free Software Foundation, Inc., | ||||||
|  |     51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. | ||||||
|  |  | ||||||
|  |     See the full license in the file "LICENSE" in the top level distribution directory | ||||||
|  | *************************************************************************************/ | ||||||
|  | /*  END LEGAL */ | ||||||
|  | #pragma once | ||||||
|  |  | ||||||
|  |  | ||||||
|  | NAMESPACE_BEGIN(Grid); | ||||||
|  |  | ||||||
|  | std::string sizeString(size_t bytes); | ||||||
|  |  | ||||||
|  | struct MemoryStats | ||||||
|  | { | ||||||
|  |   size_t totalAllocated{0}, maxAllocated{0},  | ||||||
|  |     currentlyAllocated{0}, totalFreed{0}; | ||||||
|  | }; | ||||||
|  |      | ||||||
|  | class MemoryProfiler | ||||||
|  | { | ||||||
|  | public: | ||||||
|  |   static MemoryStats *stats; | ||||||
|  |   static bool        debug; | ||||||
|  | }; | ||||||
|  |  | ||||||
|  | #define memString(bytes) std::to_string(bytes) + " (" + sizeString(bytes) + ")" | ||||||
|  | #define profilerDebugPrint						\ | ||||||
|  |   if (MemoryProfiler::stats)						\ | ||||||
|  |     {									\ | ||||||
|  |       auto s = MemoryProfiler::stats;					\ | ||||||
|  |       std::cout << GridLogDebug << "[Memory debug] Stats " << MemoryProfiler::stats << std::endl; \ | ||||||
|  |       std::cout << GridLogDebug << "[Memory debug] total  : " << memString(s->totalAllocated) \ | ||||||
|  | 		<< std::endl;						\ | ||||||
|  |       std::cout << GridLogDebug << "[Memory debug] max    : " << memString(s->maxAllocated) \ | ||||||
|  | 		<< std::endl;						\ | ||||||
|  |       std::cout << GridLogDebug << "[Memory debug] current: " << memString(s->currentlyAllocated) \ | ||||||
|  | 		<< std::endl;						\ | ||||||
|  |       std::cout << GridLogDebug << "[Memory debug] freed  : " << memString(s->totalFreed) \ | ||||||
|  | 		<< std::endl;						\ | ||||||
|  |     } | ||||||
|  |  | ||||||
|  | #define profilerAllocate(bytes)						\ | ||||||
|  |   if (MemoryProfiler::stats)						\ | ||||||
|  |     {									\ | ||||||
|  |       auto s = MemoryProfiler::stats;					\ | ||||||
|  |       s->totalAllocated     += (bytes);					\ | ||||||
|  |       s->currentlyAllocated += (bytes);					\ | ||||||
|  |       s->maxAllocated        = std::max(s->maxAllocated, s->currentlyAllocated); \ | ||||||
|  |     }									\ | ||||||
|  |   if (MemoryProfiler::debug)						\ | ||||||
|  |     {									\ | ||||||
|  |       std::cout << GridLogDebug << "[Memory debug] allocating " << memString(bytes) << std::endl; \ | ||||||
|  |       profilerDebugPrint;						\ | ||||||
|  |     } | ||||||
|  |  | ||||||
|  | #define profilerFree(bytes)						\ | ||||||
|  |   if (MemoryProfiler::stats)						\ | ||||||
|  |     {									\ | ||||||
|  |       auto s = MemoryProfiler::stats;					\ | ||||||
|  |       s->totalFreed         += (bytes);					\ | ||||||
|  |       s->currentlyAllocated -= (bytes);					\ | ||||||
|  |     }									\ | ||||||
|  |   if (MemoryProfiler::debug)						\ | ||||||
|  |     {									\ | ||||||
|  |       std::cout << GridLogDebug << "[Memory debug] freeing " << memString(bytes) << std::endl; \ | ||||||
|  |       profilerDebugPrint;						\ | ||||||
|  |     } | ||||||
|  |  | ||||||
|  | void check_huge_pages(void *Buf,uint64_t BYTES); | ||||||
|  |  | ||||||
|  | NAMESPACE_END(Grid); | ||||||
|  |  | ||||||
| @@ -1,4 +1,4 @@ | |||||||
|     /*************************************************************************************
 | /*************************************************************************************
 | ||||||
| 
 | 
 | ||||||
|     Grid physics library, www.github.com/paboyle/Grid  |     Grid physics library, www.github.com/paboyle/Grid  | ||||||
| 
 | 
 | ||||||
| @@ -23,8 +23,8 @@ Author: Peter Boyle <paboyle@ph.ed.ac.uk> | |||||||
|     51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. |     51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. | ||||||
| 
 | 
 | ||||||
|     See the full license in the file "LICENSE" in the top level distribution directory |     See the full license in the file "LICENSE" in the top level distribution directory | ||||||
|     *************************************************************************************/ | *************************************************************************************/ | ||||||
|     /*  END LEGAL */ | /*  END LEGAL */ | ||||||
| #ifndef GRID_CARTESIAN_H | #ifndef GRID_CARTESIAN_H | ||||||
| #define GRID_CARTESIAN_H | #define GRID_CARTESIAN_H | ||||||
| 
 | 
 | ||||||
							
								
								
									
										291
									
								
								Grid/cartesian/Cartesian_base.h
									
									
									
									
									
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										291
									
								
								Grid/cartesian/Cartesian_base.h
									
									
									
									
									
										Normal file
									
								
							| @@ -0,0 +1,291 @@ | |||||||
|  | /************************************************************************************* | ||||||
|  |  | ||||||
|  |     Grid physics library, www.github.com/paboyle/Grid  | ||||||
|  |  | ||||||
|  |     Source file: ./lib/cartesian/Cartesian_base.h | ||||||
|  |  | ||||||
|  |     Copyright (C) 2015 | ||||||
|  |  | ||||||
|  |     Author: Peter Boyle <paboyle@ph.ed.ac.uk> | ||||||
|  |     Author: paboyle <paboyle@ph.ed.ac.uk> | ||||||
|  |     Author: Guido Cossu <guido.cossu@ed.ac.uk> | ||||||
|  |  | ||||||
|  |     This program is free software; you can redistribute it and/or modify | ||||||
|  |     it under the terms of the GNU General Public License as published by | ||||||
|  |     the Free Software Foundation; either version 2 of the License, or | ||||||
|  |     (at your option) any later version. | ||||||
|  |  | ||||||
|  |     This program is distributed in the hope that it will be useful, | ||||||
|  |     but WITHOUT ANY WARRANTY; without even the implied warranty of | ||||||
|  |     MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the | ||||||
|  |     GNU General Public License for more details. | ||||||
|  |  | ||||||
|  |     You should have received a copy of the GNU General Public License along | ||||||
|  |     with this program; if not, write to the Free Software Foundation, Inc., | ||||||
|  |     51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. | ||||||
|  |  | ||||||
|  |     See the full license in the file "LICENSE" in the top level distribution directory | ||||||
|  | *************************************************************************************/ | ||||||
|  | /*  END LEGAL */ | ||||||
|  | #ifndef GRID_CARTESIAN_BASE_H | ||||||
|  | #define GRID_CARTESIAN_BASE_H | ||||||
|  |  | ||||||
|  | NAMESPACE_BEGIN(Grid); | ||||||
|  |  | ||||||
|  | ////////////////////////////////////////////////////////////////////// | ||||||
|  | // Commicator provides information on the processor grid | ||||||
|  | ////////////////////////////////////////////////////////////////////// | ||||||
|  | //    unsigned long _ndimension; | ||||||
|  | //    Coordinate _processors; // processor grid | ||||||
|  | //    int              _processor;  // linear processor rank | ||||||
|  | //    Coordinate _processor_coor;  // linear processor rank | ||||||
|  | ////////////////////////////////////////////////////////////////////// | ||||||
|  | class GridBase : public CartesianCommunicator , public GridThread { | ||||||
|  |  | ||||||
|  | public: | ||||||
|  |   int dummy; | ||||||
|  |   // Give Lattice access | ||||||
|  |   template<class object> friend class Lattice; | ||||||
|  |  | ||||||
|  |   GridBase(const Coordinate & processor_grid) : CartesianCommunicator(processor_grid) { LocallyPeriodic=0;};  | ||||||
|  |  | ||||||
|  |   GridBase(const Coordinate & processor_grid, | ||||||
|  | 	   const CartesianCommunicator &parent, | ||||||
|  | 	   int &split_rank)  | ||||||
|  |     : CartesianCommunicator(processor_grid,parent,split_rank) {LocallyPeriodic=0;}; | ||||||
|  |  | ||||||
|  |   GridBase(const Coordinate & processor_grid, | ||||||
|  | 	   const CartesianCommunicator &parent)  | ||||||
|  |     : CartesianCommunicator(processor_grid,parent,dummy) {LocallyPeriodic=0;}; | ||||||
|  |  | ||||||
|  |   virtual ~GridBase() = default; | ||||||
|  |  | ||||||
|  |   // Physics Grid information. | ||||||
|  |   Coordinate _simd_layout;// Which dimensions get relayed out over simd lanes. | ||||||
|  |   Coordinate _fdimensions;// (full) Global dimensions of array prior to cb removal | ||||||
|  |   Coordinate _gdimensions;// Global dimensions of array after cb removal | ||||||
|  |   Coordinate _ldimensions;// local dimensions of array with processor images removed | ||||||
|  |   Coordinate _rdimensions;// Reduced local dimensions with simd lane images and processor images removed  | ||||||
|  |   Coordinate _ostride;    // Outer stride for each dimension | ||||||
|  |   Coordinate _istride;    // Inner stride i.e. within simd lane | ||||||
|  |   int _osites;                  // _isites*_osites = product(dimensions). | ||||||
|  |   int _isites; | ||||||
|  |   int _fsites;                  // _isites*_osites = product(dimensions). | ||||||
|  |   int _gsites; | ||||||
|  |   Coordinate _slice_block;// subslice information | ||||||
|  |   Coordinate _slice_stride; | ||||||
|  |   Coordinate _slice_nblock; | ||||||
|  |  | ||||||
|  |   Coordinate _lstart;     // local start of array in gcoors _processor_coor[d]*_ldimensions[d] | ||||||
|  |   Coordinate _lend  ;     // local end of array in gcoors   _processor_coor[d]*_ldimensions[d]+_ldimensions_[d]-1 | ||||||
|  |  | ||||||
|  |   bool _isCheckerBoarded;  | ||||||
|  |   int        LocallyPeriodic; | ||||||
|  |   Coordinate _checker_dim_mask; | ||||||
|  |  | ||||||
|  | public: | ||||||
|  |  | ||||||
|  |   //////////////////////////////////////////////////////////////// | ||||||
|  |   // Checkerboarding interface is virtual and overridden by  | ||||||
|  |   // GridCartesian / GridRedBlackCartesian | ||||||
|  |   //////////////////////////////////////////////////////////////// | ||||||
|  |   virtual int CheckerBoarded(int dim)=0; | ||||||
|  |   virtual int CheckerBoard(const Coordinate &site)=0; | ||||||
|  |   virtual int CheckerBoardDestination(int source_cb,int shift,int dim)=0; | ||||||
|  |   virtual int CheckerBoardShift(int source_cb,int dim,int shift,int osite)=0; | ||||||
|  |   virtual int CheckerBoardShiftForCB(int source_cb,int dim,int shift,int cb)=0; | ||||||
|  |   virtual int CheckerBoardFromOindex (int Oindex)=0; | ||||||
|  |   virtual int CheckerBoardFromOindexTable (int Oindex)=0; | ||||||
|  |  | ||||||
|  |   ////////////////////////////////////////////////////////////////////////////////////////////// | ||||||
|  |   // Local layout calculations | ||||||
|  |   ////////////////////////////////////////////////////////////////////////////////////////////// | ||||||
|  |   // These routines are key. Subdivide the linearised cartesian index into | ||||||
|  |   //      "inner" index identifying which simd lane of object<vFcomplex> is associated with coord | ||||||
|  |   //      "outer" index identifying which element of _odata in class "Lattice" is associated with coord. | ||||||
|  |   // | ||||||
|  |   // Compared to, say, Blitz++ we simply need to store BOTH an inner stride and an outer | ||||||
|  |   // stride per dimension. The cost of evaluating the indexing information is doubled for an n-dimensional | ||||||
|  |   // coordinate. Note, however, for data parallel operations the "inner" indexing cost is not paid and all | ||||||
|  |   // lanes are operated upon simultaneously. | ||||||
|  |    | ||||||
|  |   virtual int oIndex(Coordinate &coor) | ||||||
|  |   { | ||||||
|  |     int idx=0; | ||||||
|  |     // Works with either global or local coordinates | ||||||
|  |     for(int d=0;d<_ndimension;d++) idx+=_ostride[d]*(coor[d]%_rdimensions[d]); | ||||||
|  |     return idx; | ||||||
|  |   } | ||||||
|  |   virtual int iIndex(Coordinate &lcoor) | ||||||
|  |   { | ||||||
|  |     int idx=0; | ||||||
|  |     for(int d=0;d<_ndimension;d++) idx+=_istride[d]*(lcoor[d]/_rdimensions[d]); | ||||||
|  |     return idx; | ||||||
|  |   } | ||||||
|  |   inline int oIndexReduced(Coordinate &ocoor) | ||||||
|  |   { | ||||||
|  |     int idx=0;  | ||||||
|  |     // ocoor is already reduced so can eliminate the modulo operation | ||||||
|  |     // for fast indexing and inline the routine | ||||||
|  |     for(int d=0;d<_ndimension;d++) idx+=_ostride[d]*ocoor[d]; | ||||||
|  |     return idx; | ||||||
|  |   } | ||||||
|  |   inline void oCoorFromOindex (Coordinate& coor,int Oindex){ | ||||||
|  |     Lexicographic::CoorFromIndex(coor,Oindex,_rdimensions); | ||||||
|  |   } | ||||||
|  |  | ||||||
|  |   inline void InOutCoorToLocalCoor (Coordinate &ocoor, Coordinate &icoor, Coordinate &lcoor) { | ||||||
|  |     lcoor.resize(_ndimension); | ||||||
|  |     for (int d = 0; d < _ndimension; d++) | ||||||
|  |       lcoor[d] = ocoor[d] + _rdimensions[d] * icoor[d]; | ||||||
|  |   } | ||||||
|  |  | ||||||
|  |   ////////////////////////////////////////////////////////// | ||||||
|  |   // SIMD lane addressing | ||||||
|  |   ////////////////////////////////////////////////////////// | ||||||
|  |   inline void iCoorFromIindex(Coordinate &coor,int lane) | ||||||
|  |   { | ||||||
|  |     Lexicographic::CoorFromIndex(coor,lane,_simd_layout); | ||||||
|  |   } | ||||||
|  |  | ||||||
|  |   inline int PermuteDim(int dimension){ | ||||||
|  |     return _simd_layout[dimension]>1; | ||||||
|  |   } | ||||||
|  |   inline int PermuteType(int dimension){ | ||||||
|  |     int permute_type=0; | ||||||
|  |     // | ||||||
|  |     // Best way to encode this would be to present a mask  | ||||||
|  |     // for which simd dimensions are rotated, and the rotation | ||||||
|  |     // size. If there is only one simd dimension rotated, this is just  | ||||||
|  |     // a permute.  | ||||||
|  |     // | ||||||
|  |     // Cases: PermuteType == 1,2,4,8 | ||||||
|  |     // Distance should be either 0,1,2.. | ||||||
|  |     // | ||||||
|  |     if ( _simd_layout[dimension] > 2 ) {  | ||||||
|  |       for(int d=0;d<_ndimension;d++){ | ||||||
|  | 	if ( d != dimension ) assert ( (_simd_layout[d]==1)  ); | ||||||
|  |       } | ||||||
|  |       permute_type = RotateBit; // How to specify distance; this is not just direction. | ||||||
|  |       return permute_type; | ||||||
|  |     } | ||||||
|  |  | ||||||
|  |     for(int d=_ndimension-1;d>dimension;d--){ | ||||||
|  |       if (_simd_layout[d]>1 ) permute_type++; | ||||||
|  |     } | ||||||
|  |     return permute_type; | ||||||
|  |   } | ||||||
|  |   //////////////////////////////////////////////////////////////// | ||||||
|  |   // Array sizing queries | ||||||
|  |   //////////////////////////////////////////////////////////////// | ||||||
|  |  | ||||||
|  |   inline int iSites(void) const { return _isites; }; | ||||||
|  |   inline int Nsimd(void)  const { return _isites; };// Synonymous with iSites | ||||||
|  |   inline int oSites(void) const { return _osites; }; | ||||||
|  |   inline int lSites(void) const { return _isites*_osites; };  | ||||||
|  |   inline int gSites(void) const { return _isites*_osites*_Nprocessors; };  | ||||||
|  |   inline int Nd    (void) const { return _ndimension;}; | ||||||
|  |  | ||||||
|  |   inline const Coordinate LocalStarts(void)             { return _lstart;    }; | ||||||
|  |   inline const Coordinate &FullDimensions(void)         { return _fdimensions;}; | ||||||
|  |   inline const Coordinate &GlobalDimensions(void)       { return _gdimensions;}; | ||||||
|  |   inline const Coordinate &LocalDimensions(void)        { return _ldimensions;}; | ||||||
|  |   inline const Coordinate &VirtualLocalDimensions(void) { return _ldimensions;}; | ||||||
|  |  | ||||||
|  |   //////////////////////////////////////////////////////////////// | ||||||
|  |   // Utility to print the full decomposition details  | ||||||
|  |   //////////////////////////////////////////////////////////////// | ||||||
|  |  | ||||||
|  |   void show_decomposition(){ | ||||||
|  |     std::cout << GridLogMessage << "\tFull Dimensions    : " << _fdimensions << std::endl; | ||||||
|  |     std::cout << GridLogMessage << "\tSIMD layout        : " << _simd_layout << std::endl; | ||||||
|  |     std::cout << GridLogMessage << "\tGlobal Dimensions  : " << _gdimensions << std::endl; | ||||||
|  |     std::cout << GridLogMessage << "\tLocal Dimensions   : " << _ldimensions << std::endl; | ||||||
|  |     std::cout << GridLogMessage << "\tReduced Dimensions : " << _rdimensions << std::endl; | ||||||
|  |     std::cout << GridLogMessage << "\tOuter strides      : " << _ostride << std::endl; | ||||||
|  |     std::cout << GridLogMessage << "\tInner strides      : " << _istride << std::endl; | ||||||
|  |     std::cout << GridLogMessage << "\tiSites             : " << _isites << std::endl; | ||||||
|  |     std::cout << GridLogMessage << "\toSites             : " << _osites << std::endl; | ||||||
|  |     std::cout << GridLogMessage << "\tlSites             : " << lSites() << std::endl;         | ||||||
|  |     std::cout << GridLogMessage << "\tgSites             : " << gSites() << std::endl; | ||||||
|  |     std::cout << GridLogMessage << "\tNd                 : " << _ndimension << std::endl;              | ||||||
|  |   }  | ||||||
|  |  | ||||||
|  |   //////////////////////////////////////////////////////////////// | ||||||
|  |   // Global addressing | ||||||
|  |   //////////////////////////////////////////////////////////////// | ||||||
|  |   void GlobalIndexToGlobalCoor(int gidx,Coordinate &gcoor){ | ||||||
|  |     assert(gidx< gSites()); | ||||||
|  |     Lexicographic::CoorFromIndex(gcoor,gidx,_gdimensions); | ||||||
|  |   } | ||||||
|  |   void LocalIndexToLocalCoor(int lidx,Coordinate &lcoor){ | ||||||
|  |     assert(lidx<lSites()); | ||||||
|  |     Lexicographic::CoorFromIndex(lcoor,lidx,_ldimensions); | ||||||
|  |   } | ||||||
|  |   void GlobalCoorToGlobalIndex(const Coordinate & gcoor,int & gidx){ | ||||||
|  |     gidx=0; | ||||||
|  |     int mult=1; | ||||||
|  |     for(int mu=0;mu<_ndimension;mu++) { | ||||||
|  |       gidx+=mult*gcoor[mu]; | ||||||
|  |       mult*=_gdimensions[mu]; | ||||||
|  |     } | ||||||
|  |   } | ||||||
|  |   void GlobalCoorToProcessorCoorLocalCoor(Coordinate &pcoor,Coordinate &lcoor,const Coordinate &gcoor) | ||||||
|  |   { | ||||||
|  |     pcoor.resize(_ndimension); | ||||||
|  |     lcoor.resize(_ndimension); | ||||||
|  |     for(int mu=0;mu<_ndimension;mu++){ | ||||||
|  |       int _fld  = _fdimensions[mu]/_processors[mu]; | ||||||
|  |       pcoor[mu] = gcoor[mu]/_fld; | ||||||
|  |       lcoor[mu] = gcoor[mu]%_fld; | ||||||
|  |     } | ||||||
|  |   } | ||||||
|  |   void GlobalCoorToRankIndex(int &rank, int &o_idx, int &i_idx ,const Coordinate &gcoor) | ||||||
|  |   { | ||||||
|  |     Coordinate pcoor; | ||||||
|  |     Coordinate lcoor; | ||||||
|  |     GlobalCoorToProcessorCoorLocalCoor(pcoor,lcoor,gcoor); | ||||||
|  |     rank = RankFromProcessorCoor(pcoor); | ||||||
|  |     /* | ||||||
|  |       Coordinate cblcoor(lcoor); | ||||||
|  |       for(int d=0;d<cblcoor.size();d++){ | ||||||
|  |       if( this->CheckerBoarded(d) ) { | ||||||
|  |       cblcoor[d] = lcoor[d]/2; | ||||||
|  |       } | ||||||
|  |       } | ||||||
|  |     */ | ||||||
|  |     i_idx= iIndex(lcoor); | ||||||
|  |     o_idx= oIndex(lcoor); | ||||||
|  |   } | ||||||
|  |  | ||||||
|  |   void RankIndexToGlobalCoor(int rank, int o_idx, int i_idx , Coordinate &gcoor) | ||||||
|  |   { | ||||||
|  |     gcoor.resize(_ndimension); | ||||||
|  |     Coordinate coor(_ndimension); | ||||||
|  |  | ||||||
|  |     ProcessorCoorFromRank(rank,coor); | ||||||
|  |     for(int mu=0;mu<_ndimension;mu++) gcoor[mu] = _ldimensions[mu]*coor[mu]; | ||||||
|  |  | ||||||
|  |     iCoorFromIindex(coor,i_idx); | ||||||
|  |     for(int mu=0;mu<_ndimension;mu++) gcoor[mu] += _rdimensions[mu]*coor[mu]; | ||||||
|  |  | ||||||
|  |     oCoorFromOindex (coor,o_idx); | ||||||
|  |     for(int mu=0;mu<_ndimension;mu++) gcoor[mu] += coor[mu]; | ||||||
|  |        | ||||||
|  |   } | ||||||
|  |   void RankIndexCbToFullGlobalCoor(int rank, int o_idx, int i_idx, int cb,Coordinate &fcoor) | ||||||
|  |   { | ||||||
|  |     RankIndexToGlobalCoor(rank,o_idx,i_idx ,fcoor); | ||||||
|  |     if(CheckerBoarded(0)){ | ||||||
|  |       fcoor[0] = fcoor[0]*2+cb; | ||||||
|  |     } | ||||||
|  |   } | ||||||
|  |   void ProcessorCoorLocalCoorToGlobalCoor(Coordinate &Pcoor,Coordinate &Lcoor,Coordinate &gcoor) | ||||||
|  |   { | ||||||
|  |     gcoor.resize(_ndimension); | ||||||
|  |     for(int mu=0;mu<_ndimension;mu++) gcoor[mu] = Pcoor[mu]*_ldimensions[mu]+Lcoor[mu]; | ||||||
|  |   } | ||||||
|  | }; | ||||||
|  |  | ||||||
|  | NAMESPACE_END(Grid); | ||||||
|  | #endif | ||||||
							
								
								
									
										178
									
								
								Grid/cartesian/Cartesian_full.h
									
									
									
									
									
										Normal file
									
								
							
							
						
						
									
										178
									
								
								Grid/cartesian/Cartesian_full.h
									
									
									
									
									
										Normal file
									
								
							| @@ -0,0 +1,178 @@ | |||||||
|  | /************************************************************************************* | ||||||
|  |  | ||||||
|  |     Grid physics library, www.github.com/paboyle/Grid  | ||||||
|  |  | ||||||
|  |     Source file: ./lib/cartesian/Cartesian_full.h | ||||||
|  |  | ||||||
|  |     Copyright (C) 2015 | ||||||
|  |  | ||||||
|  | Author: Peter Boyle <paboyle@ph.ed.ac.uk> | ||||||
|  |  | ||||||
|  |     This program is free software; you can redistribute it and/or modify | ||||||
|  |     it under the terms of the GNU General Public License as published by | ||||||
|  |     the Free Software Foundation; either version 2 of the License, or | ||||||
|  |     (at your option) any later version. | ||||||
|  |  | ||||||
|  |     This program is distributed in the hope that it will be useful, | ||||||
|  |     but WITHOUT ANY WARRANTY; without even the implied warranty of | ||||||
|  |     MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the | ||||||
|  |     GNU General Public License for more details. | ||||||
|  |  | ||||||
|  |     You should have received a copy of the GNU General Public License along | ||||||
|  |     with this program; if not, write to the Free Software Foundation, Inc., | ||||||
|  |     51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. | ||||||
|  |  | ||||||
|  |     See the full license in the file "LICENSE" in the top level distribution directory | ||||||
|  | *************************************************************************************/ | ||||||
|  | /*  END LEGAL */ | ||||||
|  | #ifndef GRID_CARTESIAN_FULL_H | ||||||
|  | #define GRID_CARTESIAN_FULL_H | ||||||
|  |  | ||||||
|  | NAMESPACE_BEGIN(Grid); | ||||||
|  |      | ||||||
|  | ///////////////////////////////////////////////////////////////////////////////////////// | ||||||
|  | // Grid Support. | ||||||
|  | ///////////////////////////////////////////////////////////////////////////////////////// | ||||||
|  |  | ||||||
|  | class GridCartesian: public GridBase { | ||||||
|  |  | ||||||
|  | public: | ||||||
|  |   int dummy; | ||||||
|  |   Coordinate _checker_dim_mask; | ||||||
|  |   virtual int  CheckerBoardFromOindexTable (int Oindex) { | ||||||
|  |     return 0; | ||||||
|  |   } | ||||||
|  |   virtual int  CheckerBoardFromOindex (int Oindex) | ||||||
|  |   { | ||||||
|  |     return 0; | ||||||
|  |   } | ||||||
|  |   virtual int CheckerBoarded(int dim){ | ||||||
|  |     return 0; | ||||||
|  |   } | ||||||
|  |   virtual int CheckerBoard(const Coordinate &site){ | ||||||
|  |     return 0; | ||||||
|  |   } | ||||||
|  |   virtual int CheckerBoardDestination(int cb,int shift,int dim){ | ||||||
|  |     return 0; | ||||||
|  |   } | ||||||
|  |   virtual int CheckerBoardShiftForCB(int source_cb,int dim,int shift, int ocb){ | ||||||
|  |     return shift; | ||||||
|  |   } | ||||||
|  |   virtual int CheckerBoardShift(int source_cb,int dim,int shift, int osite){ | ||||||
|  |     return shift; | ||||||
|  |   } | ||||||
|  |   ///////////////////////////////////////////////////////////////////////// | ||||||
|  |   // Constructor takes a parent grid and possibly subdivides communicator. | ||||||
|  |   ///////////////////////////////////////////////////////////////////////// | ||||||
|  |   GridCartesian(const Coordinate &dimensions, | ||||||
|  | 		const Coordinate &simd_layout, | ||||||
|  | 		const Coordinate &processor_grid, | ||||||
|  | 		const GridCartesian &parent) : GridBase(processor_grid,parent,dummy) | ||||||
|  |   { | ||||||
|  |     Init(dimensions,simd_layout,processor_grid); | ||||||
|  |   } | ||||||
|  |   GridCartesian(const Coordinate &dimensions, | ||||||
|  | 		const Coordinate &simd_layout, | ||||||
|  | 		const Coordinate &processor_grid, | ||||||
|  | 		const GridCartesian &parent,int &split_rank) : GridBase(processor_grid,parent,split_rank) | ||||||
|  |   { | ||||||
|  |     Init(dimensions,simd_layout,processor_grid); | ||||||
|  |   } | ||||||
|  |   ///////////////////////////////////////////////////////////////////////// | ||||||
|  |   // Construct from comm world | ||||||
|  |   ///////////////////////////////////////////////////////////////////////// | ||||||
|  |   GridCartesian(const Coordinate &dimensions, | ||||||
|  | 		const Coordinate &simd_layout, | ||||||
|  | 		const Coordinate &processor_grid) : GridBase(processor_grid) | ||||||
|  |   { | ||||||
|  |     Init(dimensions,simd_layout,processor_grid); | ||||||
|  |   } | ||||||
|  |  | ||||||
|  |   virtual ~GridCartesian() = default; | ||||||
|  |  | ||||||
|  |   void Init(const Coordinate &dimensions, | ||||||
|  | 	    const Coordinate &simd_layout, | ||||||
|  | 	    const Coordinate &processor_grid) | ||||||
|  |   { | ||||||
|  |     /////////////////////// | ||||||
|  |     // Grid information | ||||||
|  |     /////////////////////// | ||||||
|  |       _isCheckerBoarded = false; | ||||||
|  |     _ndimension = dimensions.size(); | ||||||
|  |  | ||||||
|  |     _fdimensions.resize(_ndimension); | ||||||
|  |     _gdimensions.resize(_ndimension); | ||||||
|  |     _ldimensions.resize(_ndimension); | ||||||
|  |     _rdimensions.resize(_ndimension); | ||||||
|  |     _simd_layout.resize(_ndimension); | ||||||
|  |     _checker_dim_mask.resize(_ndimension);; | ||||||
|  |     _lstart.resize(_ndimension); | ||||||
|  |     _lend.resize(_ndimension); | ||||||
|  |  | ||||||
|  |     _ostride.resize(_ndimension); | ||||||
|  |     _istride.resize(_ndimension); | ||||||
|  |  | ||||||
|  |     _fsites = _gsites = _osites = _isites = 1; | ||||||
|  |  | ||||||
|  |     for (int d = 0; d < _ndimension; d++) | ||||||
|  |       { | ||||||
|  | 	_checker_dim_mask[d]=0; | ||||||
|  |  | ||||||
|  |         _fdimensions[d] = dimensions[d];   // Global dimensions | ||||||
|  |         _gdimensions[d] = _fdimensions[d]; // Global dimensions | ||||||
|  |         _simd_layout[d] = simd_layout[d]; | ||||||
|  |         _fsites = _fsites * _fdimensions[d]; | ||||||
|  |         _gsites = _gsites * _gdimensions[d]; | ||||||
|  |  | ||||||
|  |         // Use a reduced simd grid | ||||||
|  |         _ldimensions[d] = _gdimensions[d] / _processors[d]; //local dimensions | ||||||
|  |         //std::cout << _ldimensions[d] << "  " << _gdimensions[d] << "  " << _processors[d] << std::endl; | ||||||
|  |         assert(_ldimensions[d] * _processors[d] == _gdimensions[d]); | ||||||
|  |  | ||||||
|  |         _rdimensions[d] = _ldimensions[d] / _simd_layout[d]; //overdecomposition | ||||||
|  |         assert(_rdimensions[d] * _simd_layout[d] == _ldimensions[d]); | ||||||
|  |  | ||||||
|  |         _lstart[d] = _processor_coor[d] * _ldimensions[d]; | ||||||
|  |         _lend[d] = _processor_coor[d] * _ldimensions[d] + _ldimensions[d] - 1; | ||||||
|  |         _osites *= _rdimensions[d]; | ||||||
|  |         _isites *= _simd_layout[d]; | ||||||
|  |  | ||||||
|  |         // Addressing support | ||||||
|  |         if (d == 0) | ||||||
|  | 	  { | ||||||
|  | 	    _ostride[d] = 1; | ||||||
|  | 	    _istride[d] = 1; | ||||||
|  | 	  } | ||||||
|  |         else | ||||||
|  | 	  { | ||||||
|  | 	    _ostride[d] = _ostride[d - 1] * _rdimensions[d - 1]; | ||||||
|  | 	    _istride[d] = _istride[d - 1] * _simd_layout[d - 1]; | ||||||
|  | 	  } | ||||||
|  |       } | ||||||
|  |  | ||||||
|  |     /////////////////////// | ||||||
|  |     // subplane information | ||||||
|  |     /////////////////////// | ||||||
|  |     _slice_block.resize(_ndimension); | ||||||
|  |     _slice_stride.resize(_ndimension); | ||||||
|  |     _slice_nblock.resize(_ndimension); | ||||||
|  |  | ||||||
|  |     int block = 1; | ||||||
|  |     int nblock = 1; | ||||||
|  |     for (int d = 0; d < _ndimension; d++) | ||||||
|  |       nblock *= _rdimensions[d]; | ||||||
|  |  | ||||||
|  |     for (int d = 0; d < _ndimension; d++) | ||||||
|  |       { | ||||||
|  |         nblock /= _rdimensions[d]; | ||||||
|  |         _slice_block[d] = block; | ||||||
|  |         _slice_stride[d] = _ostride[d] * _rdimensions[d]; | ||||||
|  |         _slice_nblock[d] = nblock; | ||||||
|  |         block = block * _rdimensions[d]; | ||||||
|  |       } | ||||||
|  |   }; | ||||||
|  |  | ||||||
|  | }; | ||||||
|  |  | ||||||
|  | NAMESPACE_END(Grid); | ||||||
|  | #endif | ||||||
							
								
								
									
										305
									
								
								Grid/cartesian/Cartesian_red_black.h
									
									
									
									
									
										Normal file
									
								
							
							
						
						
									
										305
									
								
								Grid/cartesian/Cartesian_red_black.h
									
									
									
									
									
										Normal file
									
								
							| @@ -0,0 +1,305 @@ | |||||||
|  | /************************************************************************************* | ||||||
|  |  | ||||||
|  |     Grid physics library, www.github.com/paboyle/Grid  | ||||||
|  |  | ||||||
|  |     Source file: ./lib/cartesian/Cartesian_red_black.h | ||||||
|  |  | ||||||
|  |     Copyright (C) 2015 | ||||||
|  |  | ||||||
|  | Author: Azusa Yamaguchi <ayamaguc@staffmail.ed.ac.uk> | ||||||
|  | Author: Peter Boyle <paboyle@ph.ed.ac.uk> | ||||||
|  |  | ||||||
|  |     This program is free software; you can redistribute it and/or modify | ||||||
|  |     it under the terms of the GNU General Public License as published by | ||||||
|  |     the Free Software Foundation; either version 2 of the License, or | ||||||
|  |     (at your option) any later version. | ||||||
|  |  | ||||||
|  |     This program is distributed in the hope that it will be useful, | ||||||
|  |     but WITHOUT ANY WARRANTY; without even the implied warranty of | ||||||
|  |     MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the | ||||||
|  |     GNU General Public License for more details. | ||||||
|  |  | ||||||
|  |     You should have received a copy of the GNU General Public License along | ||||||
|  |     with this program; if not, write to the Free Software Foundation, Inc., | ||||||
|  |     51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. | ||||||
|  |  | ||||||
|  |     See the full license in the file "LICENSE" in the top level distribution directory | ||||||
|  | *************************************************************************************/ | ||||||
|  | /*  END LEGAL */ | ||||||
|  | #ifndef GRID_CARTESIAN_RED_BLACK_H | ||||||
|  | #define GRID_CARTESIAN_RED_BLACK_H | ||||||
|  |  | ||||||
|  | NAMESPACE_BEGIN(Grid); | ||||||
|  |  | ||||||
|  | static const int CbRed  =0; | ||||||
|  | static const int CbBlack=1; | ||||||
|  | static const int Even   =CbRed; | ||||||
|  | static const int Odd    =CbBlack; | ||||||
|  |  | ||||||
|  | accelerator_inline int RedBlackCheckerBoardFromOindex (int oindex,const Coordinate &rdim,const Coordinate &chk_dim_msk) | ||||||
|  | { | ||||||
|  |   int nd=rdim.size(); | ||||||
|  |   Coordinate coor(nd); | ||||||
|  |  | ||||||
|  |   Lexicographic::CoorFromIndex(coor,oindex,rdim); | ||||||
|  |  | ||||||
|  |   int linear=0; | ||||||
|  |   for(int d=0;d<nd;d++){ | ||||||
|  |     if(chk_dim_msk[d]) | ||||||
|  |       linear=linear+coor[d]; | ||||||
|  |   } | ||||||
|  |   return (linear&0x1); | ||||||
|  | } | ||||||
|  |  | ||||||
|  |      | ||||||
|  | // Specialise this for red black grids storing half the data like a chess board. | ||||||
|  | class GridRedBlackCartesian : public GridBase | ||||||
|  | { | ||||||
|  | public: | ||||||
|  |   //  Coordinate _checker_dim_mask; | ||||||
|  |   int              _checker_dim; | ||||||
|  |   std::vector<int> _checker_board; | ||||||
|  |  | ||||||
|  |   virtual int CheckerBoarded(int dim){ | ||||||
|  |     if( dim==_checker_dim) return 1; | ||||||
|  |     else return 0; | ||||||
|  |   } | ||||||
|  |   virtual int CheckerBoard(const Coordinate &site){ | ||||||
|  |     int linear=0; | ||||||
|  |     assert(site.size()==_ndimension); | ||||||
|  |     for(int d=0;d<_ndimension;d++){  | ||||||
|  |       if(_checker_dim_mask[d]) | ||||||
|  | 	linear=linear+site[d]; | ||||||
|  |     } | ||||||
|  |     return (linear&0x1); | ||||||
|  |   } | ||||||
|  |  | ||||||
|  |   // Depending on the cb of site, we toggle source cb. | ||||||
|  |   // for block #b, element #e = (b, e) | ||||||
|  |   // we need  | ||||||
|  |   virtual int CheckerBoardShiftForCB(int source_cb,int dim,int shift,int ocb){ | ||||||
|  |     if(dim != _checker_dim) return shift; | ||||||
|  |  | ||||||
|  |     int fulldim =_fdimensions[dim]; | ||||||
|  |     shift = (shift+fulldim)%fulldim; | ||||||
|  |  | ||||||
|  |     // Probably faster with table lookup; | ||||||
|  |     // or by looping over x,y,z and multiply rather than computing checkerboard. | ||||||
|  | 	   | ||||||
|  |     if ( (source_cb+ocb)&1 ) { | ||||||
|  |       return (shift)/2; | ||||||
|  |     } else { | ||||||
|  |       return (shift+1)/2; | ||||||
|  |     } | ||||||
|  |   } | ||||||
|  |   virtual int  CheckerBoardFromOindexTable (int Oindex) { | ||||||
|  |     return _checker_board[Oindex]; | ||||||
|  |   } | ||||||
|  |   virtual int  CheckerBoardFromOindex (int Oindex) | ||||||
|  |   { | ||||||
|  |     Coordinate ocoor; | ||||||
|  |     oCoorFromOindex(ocoor,Oindex); | ||||||
|  |     return CheckerBoard(ocoor); | ||||||
|  |   } | ||||||
|  |   virtual int CheckerBoardShift(int source_cb,int dim,int shift,int osite){ | ||||||
|  |  | ||||||
|  |     if(dim != _checker_dim) return shift; | ||||||
|  |  | ||||||
|  |     int ocb=CheckerBoardFromOindex(osite); | ||||||
|  |        | ||||||
|  |     return CheckerBoardShiftForCB(source_cb,dim,shift,ocb); | ||||||
|  |   } | ||||||
|  |      | ||||||
|  |   virtual int CheckerBoardDestination(int source_cb,int shift,int dim){ | ||||||
|  |     if ( _checker_dim_mask[dim]  ) { | ||||||
|  |       // If _fdimensions[checker_dim] is odd, then shifting by 1 in other dims | ||||||
|  |       // does NOT cause a parity hop. | ||||||
|  |       int add=(dim==_checker_dim) ? 0 : _fdimensions[_checker_dim]; | ||||||
|  |       if ( (shift+add) &0x1) { | ||||||
|  | 	return 1-source_cb; | ||||||
|  |       } else { | ||||||
|  | 	return source_cb; | ||||||
|  |       } | ||||||
|  |     } else { | ||||||
|  |       return source_cb; | ||||||
|  |  | ||||||
|  |     } | ||||||
|  |   }; | ||||||
|  |  | ||||||
|  |   //////////////////////////////////////////////////////////// | ||||||
|  |   // Create Redblack from original grid; require full grid pointer ? | ||||||
|  |   //////////////////////////////////////////////////////////// | ||||||
|  |   GridRedBlackCartesian(const GridBase *base) : GridBase(base->_processors,*base) | ||||||
|  |   { | ||||||
|  |     int dims = base->_ndimension; | ||||||
|  |     Coordinate checker_dim_mask(dims,1); | ||||||
|  |     int checker_dim = 0; | ||||||
|  |     Init(base->_fdimensions,base->_simd_layout,base->_processors,checker_dim_mask,checker_dim); | ||||||
|  |   }; | ||||||
|  |  | ||||||
|  |   //////////////////////////////////////////////////////////// | ||||||
|  |   // Create redblack from original grid, with non-trivial checker dim mask | ||||||
|  |   //////////////////////////////////////////////////////////// | ||||||
|  |   GridRedBlackCartesian(const GridBase *base, | ||||||
|  | 			const Coordinate &checker_dim_mask, | ||||||
|  | 			int checker_dim | ||||||
|  | 			) :  GridBase(base->_processors,*base)  | ||||||
|  |   { | ||||||
|  |     Init(base->_fdimensions,base->_simd_layout,base->_processors,checker_dim_mask,checker_dim)  ; | ||||||
|  |   } | ||||||
|  |  | ||||||
|  |   virtual ~GridRedBlackCartesian() = default; | ||||||
|  |  | ||||||
|  |   void Init(const Coordinate &dimensions, | ||||||
|  | 	    const Coordinate &simd_layout, | ||||||
|  | 	    const Coordinate &processor_grid, | ||||||
|  | 	    const Coordinate &checker_dim_mask, | ||||||
|  | 	    int checker_dim) | ||||||
|  |   { | ||||||
|  |  | ||||||
|  |       _isCheckerBoarded = true; | ||||||
|  |     _checker_dim = checker_dim; | ||||||
|  |     assert(checker_dim_mask[checker_dim] == 1); | ||||||
|  |     _ndimension = dimensions.size(); | ||||||
|  |     assert(checker_dim_mask.size() == _ndimension); | ||||||
|  |     assert(processor_grid.size() == _ndimension); | ||||||
|  |     assert(simd_layout.size() == _ndimension); | ||||||
|  |  | ||||||
|  |     _fdimensions.resize(_ndimension); | ||||||
|  |     _gdimensions.resize(_ndimension); | ||||||
|  |     _ldimensions.resize(_ndimension); | ||||||
|  |     _rdimensions.resize(_ndimension); | ||||||
|  |     _simd_layout.resize(_ndimension); | ||||||
|  |     _lstart.resize(_ndimension); | ||||||
|  |     _lend.resize(_ndimension); | ||||||
|  |  | ||||||
|  |     _ostride.resize(_ndimension); | ||||||
|  |     _istride.resize(_ndimension); | ||||||
|  |  | ||||||
|  |     _fsites = _gsites = _osites = _isites = 1; | ||||||
|  |  | ||||||
|  |     _checker_dim_mask = checker_dim_mask; | ||||||
|  |  | ||||||
|  |     for (int d = 0; d < _ndimension; d++) | ||||||
|  |       { | ||||||
|  |         _fdimensions[d] = dimensions[d]; | ||||||
|  |         _gdimensions[d] = _fdimensions[d]; | ||||||
|  |         _fsites = _fsites * _fdimensions[d]; | ||||||
|  |         _gsites = _gsites * _gdimensions[d]; | ||||||
|  |  | ||||||
|  |         if (d == _checker_dim) | ||||||
|  | 	  { | ||||||
|  | 	    assert((_gdimensions[d] & 0x1) == 0); | ||||||
|  | 	    _gdimensions[d] = _gdimensions[d] / 2; // Remove a checkerboard | ||||||
|  | 	    _gsites /= 2; | ||||||
|  | 	  } | ||||||
|  |         _ldimensions[d] = _gdimensions[d] / _processors[d]; | ||||||
|  |         assert(_ldimensions[d] * _processors[d] == _gdimensions[d]); | ||||||
|  |         _lstart[d] = _processor_coor[d] * _ldimensions[d]; | ||||||
|  |         _lend[d] = _processor_coor[d] * _ldimensions[d] + _ldimensions[d] - 1; | ||||||
|  |  | ||||||
|  |         // Use a reduced simd grid | ||||||
|  |         _simd_layout[d] = simd_layout[d]; | ||||||
|  |         _rdimensions[d] = _ldimensions[d] / _simd_layout[d]; // this is not checking if this is integer | ||||||
|  |         assert(_rdimensions[d] * _simd_layout[d] == _ldimensions[d]); | ||||||
|  |         assert(_rdimensions[d] > 0); | ||||||
|  |  | ||||||
|  |         // all elements of a simd vector must have same checkerboard. | ||||||
|  |         // If Ls vectorised, this must still be the case; e.g. dwf rb5d | ||||||
|  |         if (_simd_layout[d] > 1) | ||||||
|  | 	  { | ||||||
|  | 	    if (checker_dim_mask[d]) | ||||||
|  | 	      { | ||||||
|  | 		assert((_rdimensions[d] & 0x1) == 0); | ||||||
|  | 	      } | ||||||
|  | 	  } | ||||||
|  |  | ||||||
|  |         _osites *= _rdimensions[d]; | ||||||
|  |         _isites *= _simd_layout[d]; | ||||||
|  |  | ||||||
|  |         // Addressing support | ||||||
|  |         if (d == 0) | ||||||
|  | 	  { | ||||||
|  | 	    _ostride[d] = 1; | ||||||
|  | 	    _istride[d] = 1; | ||||||
|  | 	  } | ||||||
|  |         else | ||||||
|  | 	  { | ||||||
|  | 	    _ostride[d] = _ostride[d - 1] * _rdimensions[d - 1]; | ||||||
|  | 	    _istride[d] = _istride[d - 1] * _simd_layout[d - 1]; | ||||||
|  | 	  } | ||||||
|  |       } | ||||||
|  |  | ||||||
|  |     //////////////////////////////////////////////////////////////////////////////////////////// | ||||||
|  |     // subplane information | ||||||
|  |     //////////////////////////////////////////////////////////////////////////////////////////// | ||||||
|  |     _slice_block.resize(_ndimension); | ||||||
|  |     _slice_stride.resize(_ndimension); | ||||||
|  |     _slice_nblock.resize(_ndimension); | ||||||
|  |  | ||||||
|  |     int block = 1; | ||||||
|  |     int nblock = 1; | ||||||
|  |     for (int d = 0; d < _ndimension; d++) | ||||||
|  |       nblock *= _rdimensions[d]; | ||||||
|  |  | ||||||
|  |     for (int d = 0; d < _ndimension; d++) | ||||||
|  |       { | ||||||
|  |         nblock /= _rdimensions[d]; | ||||||
|  |         _slice_block[d] = block; | ||||||
|  |         _slice_stride[d] = _ostride[d] * _rdimensions[d]; | ||||||
|  |         _slice_nblock[d] = nblock; | ||||||
|  |         block = block * _rdimensions[d]; | ||||||
|  |       } | ||||||
|  |  | ||||||
|  |     //////////////////////////////////////////////// | ||||||
|  |     // Create a checkerboard lookup table | ||||||
|  |     //////////////////////////////////////////////// | ||||||
|  |     int rvol = 1; | ||||||
|  |     for (int d = 0; d < _ndimension; d++) | ||||||
|  |       { | ||||||
|  |         rvol = rvol * _rdimensions[d]; | ||||||
|  |       } | ||||||
|  |     _checker_board.resize(rvol); | ||||||
|  |     for (int osite = 0; osite < _osites; osite++) | ||||||
|  |       { | ||||||
|  |         _checker_board[osite] = CheckerBoardFromOindex(osite); | ||||||
|  |       } | ||||||
|  |   }; | ||||||
|  |  | ||||||
|  | protected: | ||||||
|  |   virtual int oIndex(Coordinate &coor) | ||||||
|  |   { | ||||||
|  |     int idx = 0; | ||||||
|  |     for (int d = 0; d < _ndimension; d++) | ||||||
|  |       { | ||||||
|  |         if (d == _checker_dim) | ||||||
|  | 	  { | ||||||
|  | 	    idx += _ostride[d] * ((coor[d] / 2) % _rdimensions[d]); | ||||||
|  | 	  } | ||||||
|  |         else | ||||||
|  | 	  { | ||||||
|  | 	    idx += _ostride[d] * (coor[d] % _rdimensions[d]); | ||||||
|  | 	  } | ||||||
|  |       } | ||||||
|  |     return idx; | ||||||
|  |   }; | ||||||
|  |  | ||||||
|  |   virtual int iIndex(Coordinate &lcoor) | ||||||
|  |   { | ||||||
|  |     int idx = 0; | ||||||
|  |     for (int d = 0; d < _ndimension; d++) | ||||||
|  |       { | ||||||
|  |         if (d == _checker_dim) | ||||||
|  | 	  { | ||||||
|  | 	    idx += _istride[d] * (lcoor[d] / (2 * _rdimensions[d])); | ||||||
|  | 	  } | ||||||
|  |         else | ||||||
|  | 	  { | ||||||
|  | 	    idx += _istride[d] * (lcoor[d] / _rdimensions[d]); | ||||||
|  | 	  } | ||||||
|  |       } | ||||||
|  |     return idx; | ||||||
|  |   } | ||||||
|  | }; | ||||||
|  | NAMESPACE_END(Grid); | ||||||
|  | #endif | ||||||
| @@ -1,4 +1,4 @@ | |||||||
|     /*************************************************************************************
 | /*************************************************************************************
 | ||||||
| 
 | 
 | ||||||
|     Grid physics library, www.github.com/paboyle/Grid  |     Grid physics library, www.github.com/paboyle/Grid  | ||||||
| 
 | 
 | ||||||
| @@ -23,11 +23,13 @@ Author: Peter Boyle <paboyle@ph.ed.ac.uk> | |||||||
|     51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. |     51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. | ||||||
| 
 | 
 | ||||||
|     See the full license in the file "LICENSE" in the top level distribution directory |     See the full license in the file "LICENSE" in the top level distribution directory | ||||||
|     *************************************************************************************/ | *************************************************************************************/ | ||||||
|     /*  END LEGAL */ | /*  END LEGAL */ | ||||||
| #ifndef GRID_COMMUNICATOR_H | #ifndef GRID_COMMUNICATOR_H | ||||||
| #define GRID_COMMUNICATOR_H | #define GRID_COMMUNICATOR_H | ||||||
| 
 | 
 | ||||||
|  | #include <Grid/util/Coordinate.h> | ||||||
|  | #include <Grid/communicator/SharedMemory.h> | ||||||
| #include <Grid/communicator/Communicator_base.h> | #include <Grid/communicator/Communicator_base.h> | ||||||
| 
 | 
 | ||||||
| #endif | #endif | ||||||
							
								
								
									
										79
									
								
								Grid/communicator/Communicator_base.cc
									
									
									
									
									
										Normal file
									
								
							
							
						
						
									
										79
									
								
								Grid/communicator/Communicator_base.cc
									
									
									
									
									
										Normal file
									
								
							| @@ -0,0 +1,79 @@ | |||||||
|  | /************************************************************************************* | ||||||
|  |  | ||||||
|  |     Grid physics library, www.github.com/paboyle/Grid  | ||||||
|  |  | ||||||
|  |     Source file: ./lib/communicator/Communicator_none.cc | ||||||
|  |  | ||||||
|  |     Copyright (C) 2015 | ||||||
|  |  | ||||||
|  | Author: Peter Boyle <paboyle@ph.ed.ac.uk> | ||||||
|  |  | ||||||
|  |     This program is free software; you can redistribute it and/or modify | ||||||
|  |     it under the terms of the GNU General Public License as published by | ||||||
|  |     the Free Software Foundation; either version 2 of the License, or | ||||||
|  |     (at your option) any later version. | ||||||
|  |  | ||||||
|  |     This program is distributed in the hope that it will be useful, | ||||||
|  |     but WITHOUT ANY WARRANTY; without even the implied warranty of | ||||||
|  |     MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the | ||||||
|  |     GNU General Public License for more details. | ||||||
|  |  | ||||||
|  |     You should have received a copy of the GNU General Public License along | ||||||
|  |     with this program; if not, write to the Free Software Foundation, Inc., | ||||||
|  |     51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. | ||||||
|  |  | ||||||
|  |     See the full license in the file "LICENSE" in the top level distribution directory | ||||||
|  | *************************************************************************************/ | ||||||
|  | /*  END LEGAL */ | ||||||
|  | #include <Grid/GridCore.h> | ||||||
|  | #include <fcntl.h> | ||||||
|  | #include <unistd.h> | ||||||
|  | #include <limits.h> | ||||||
|  | #include <sys/mman.h> | ||||||
|  |  | ||||||
|  | NAMESPACE_BEGIN(Grid); | ||||||
|  |  | ||||||
|  | bool Stencil_force_mpi = true; | ||||||
|  |  | ||||||
|  | /////////////////////////////////////////////////////////////// | ||||||
|  | // Info that is setup once and indept of cartesian layout | ||||||
|  | /////////////////////////////////////////////////////////////// | ||||||
|  | CartesianCommunicator::CommunicatorPolicy_t   | ||||||
|  | CartesianCommunicator::CommunicatorPolicy= CartesianCommunicator::CommunicatorPolicyConcurrent; | ||||||
|  | int CartesianCommunicator::nCommThreads = -1; | ||||||
|  |  | ||||||
|  | ///////////////////////////////// | ||||||
|  | // Grid information queries | ||||||
|  | ///////////////////////////////// | ||||||
|  | int                      CartesianCommunicator::Dimensions(void)        { return _ndimension; }; | ||||||
|  | int                      CartesianCommunicator::IsBoss(void)            { return _processor==0; }; | ||||||
|  | int                      CartesianCommunicator::BossRank(void)          { return 0; }; | ||||||
|  | int                      CartesianCommunicator::ThisRank(void)          { return _processor; }; | ||||||
|  | const Coordinate & CartesianCommunicator::ThisProcessorCoor(void) { return _processor_coor; }; | ||||||
|  | const Coordinate & CartesianCommunicator::ProcessorGrid(void)     { return _processors; }; | ||||||
|  | int                      CartesianCommunicator::ProcessorCount(void)    { return _Nprocessors; }; | ||||||
|  |  | ||||||
|  | //////////////////////////////////////////////////////////////////////////////// | ||||||
|  | // very VERY rarely (Log, serial RNG) we need world without a grid | ||||||
|  | //////////////////////////////////////////////////////////////////////////////// | ||||||
|  |  | ||||||
|  | void CartesianCommunicator::GlobalSum(ComplexF &c) | ||||||
|  | { | ||||||
|  |   GlobalSumVector((float *)&c,2); | ||||||
|  | } | ||||||
|  | void CartesianCommunicator::GlobalSumVector(ComplexF *c,int N) | ||||||
|  | { | ||||||
|  |   GlobalSumVector((float *)c,2*N); | ||||||
|  | } | ||||||
|  | void CartesianCommunicator::GlobalSum(ComplexD &c) | ||||||
|  | { | ||||||
|  |   GlobalSumVector((double *)&c,2); | ||||||
|  | } | ||||||
|  | void CartesianCommunicator::GlobalSumVector(ComplexD *c,int N) | ||||||
|  | { | ||||||
|  |   GlobalSumVector((double *)c,2*N); | ||||||
|  | } | ||||||
|  |    | ||||||
|  | NAMESPACE_END(Grid); | ||||||
|  |  | ||||||
|  |  | ||||||
							
								
								
									
										197
									
								
								Grid/communicator/Communicator_base.h
									
									
									
									
									
										Normal file
									
								
							
							
						
						
									
										197
									
								
								Grid/communicator/Communicator_base.h
									
									
									
									
									
										Normal file
									
								
							| @@ -0,0 +1,197 @@ | |||||||
|  | /************************************************************************************* | ||||||
|  |  | ||||||
|  |     Grid physics library, www.github.com/paboyle/Grid  | ||||||
|  |  | ||||||
|  |     Source file: ./lib/communicator/Communicator_base.h | ||||||
|  |  | ||||||
|  |     Copyright (C) 2015 | ||||||
|  |  | ||||||
|  | Author: Peter Boyle <paboyle@ph.ed.ac.uk> | ||||||
|  |  | ||||||
|  |     This program is free software; you can redistribute it and/or modify | ||||||
|  |     it under the terms of the GNU General Public License as published by | ||||||
|  |     the Free Software Foundation; either version 2 of the License, or | ||||||
|  |     (at your option) any later version. | ||||||
|  |  | ||||||
|  |     This program is distributed in the hope that it will be useful, | ||||||
|  |     but WITHOUT ANY WARRANTY; without even the implied warranty of | ||||||
|  |     MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the | ||||||
|  |     GNU General Public License for more details. | ||||||
|  |  | ||||||
|  |     You should have received a copy of the GNU General Public License along | ||||||
|  |     with this program; if not, write to the Free Software Foundation, Inc., | ||||||
|  |     51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. | ||||||
|  |  | ||||||
|  |     See the full license in the file "LICENSE" in the top level distribution directory | ||||||
|  | *************************************************************************************/ | ||||||
|  | /*  END LEGAL */ | ||||||
|  | #ifndef GRID_COMMUNICATOR_BASE_H | ||||||
|  | #define GRID_COMMUNICATOR_BASE_H | ||||||
|  |  | ||||||
|  | /////////////////////////////////// | ||||||
|  | // Processor layout information | ||||||
|  | /////////////////////////////////// | ||||||
|  | #include <Grid/communicator/SharedMemory.h> | ||||||
|  |  | ||||||
|  | NAMESPACE_BEGIN(Grid); | ||||||
|  |  | ||||||
|  | extern bool Stencil_force_mpi ; | ||||||
|  |  | ||||||
|  | class CartesianCommunicator : public SharedMemory { | ||||||
|  |  | ||||||
|  | public:     | ||||||
|  |  | ||||||
|  |   //////////////////////////////////////////// | ||||||
|  |   // Policies | ||||||
|  |   //////////////////////////////////////////// | ||||||
|  |   enum CommunicatorPolicy_t { CommunicatorPolicyConcurrent, CommunicatorPolicySequential }; | ||||||
|  |   static CommunicatorPolicy_t CommunicatorPolicy; | ||||||
|  |   static void SetCommunicatorPolicy(CommunicatorPolicy_t policy ) { CommunicatorPolicy = policy; } | ||||||
|  |   static int       nCommThreads; | ||||||
|  |  | ||||||
|  |   //////////////////////////////////////////// | ||||||
|  |   // Communicator should know nothing of the physics grid, only processor grid. | ||||||
|  |   //////////////////////////////////////////// | ||||||
|  |   int              _Nprocessors;     // How many in all | ||||||
|  |   Coordinate _processors;      // Which dimensions get relayed out over processors lanes. | ||||||
|  |   int              _processor;       // linear processor rank | ||||||
|  |   Coordinate _processor_coor;  // linear processor coordinate | ||||||
|  |   unsigned long    _ndimension; | ||||||
|  |   static Grid_MPI_Comm      communicator_world; | ||||||
|  |   Grid_MPI_Comm             communicator; | ||||||
|  |   std::vector<Grid_MPI_Comm> communicator_halo; | ||||||
|  |    | ||||||
|  |   //////////////////////////////////////////////// | ||||||
|  |   // Must call in Grid startup | ||||||
|  |   //////////////////////////////////////////////// | ||||||
|  |   static void Init(int *argc, char ***argv); | ||||||
|  |  | ||||||
|  |   //////////////////////////////////////////////// | ||||||
|  |   // Constructors to sub-divide a parent communicator | ||||||
|  |   // and default to comm world | ||||||
|  |   //////////////////////////////////////////////// | ||||||
|  |   CartesianCommunicator(const Coordinate &processors,const CartesianCommunicator &parent,int &srank); | ||||||
|  |   CartesianCommunicator(const Coordinate &pdimensions_in); | ||||||
|  |   virtual ~CartesianCommunicator(); | ||||||
|  |  | ||||||
|  | private: | ||||||
|  |  | ||||||
|  |   //////////////////////////////////////////////// | ||||||
|  |   // Private initialise from an MPI communicator | ||||||
|  |   // Can use after an MPI_Comm_split, but hidden from user so private | ||||||
|  |   //////////////////////////////////////////////// | ||||||
|  |   void InitFromMPICommunicator(const Coordinate &processors, Grid_MPI_Comm communicator_base); | ||||||
|  |  | ||||||
|  | public: | ||||||
|  |    | ||||||
|  |    | ||||||
|  |   //////////////////////////////////////////////////////////////////////////////////////// | ||||||
|  |   // Wraps MPI_Cart routines, or implements equivalent on other impls | ||||||
|  |   //////////////////////////////////////////////////////////////////////////////////////// | ||||||
|  |   void ShiftedRanks(int dim,int shift,int & source, int & dest); | ||||||
|  |   int  RankFromProcessorCoor(Coordinate &coor); | ||||||
|  |   void ProcessorCoorFromRank(int rank,Coordinate &coor); | ||||||
|  |    | ||||||
|  |   int                      Dimensions(void)        ; | ||||||
|  |   int                      IsBoss(void)            ; | ||||||
|  |   int                      BossRank(void)          ; | ||||||
|  |   int                      ThisRank(void)          ; | ||||||
|  |   const Coordinate & ThisProcessorCoor(void) ; | ||||||
|  |   const Coordinate & ProcessorGrid(void)     ; | ||||||
|  |   int                      ProcessorCount(void)    ; | ||||||
|  |  | ||||||
|  |   //////////////////////////////////////////////////////////////////////////////// | ||||||
|  |   // very VERY rarely (Log, serial RNG) we need world without a grid | ||||||
|  |   //////////////////////////////////////////////////////////////////////////////// | ||||||
|  |   static int  RankWorld(void) ; | ||||||
|  |   static void BroadcastWorld(int root,void* data, int bytes); | ||||||
|  |    | ||||||
|  |   //////////////////////////////////////////////////////////// | ||||||
|  |   // Reduction | ||||||
|  |   //////////////////////////////////////////////////////////// | ||||||
|  |   void GlobalMax(RealD &); | ||||||
|  |   void GlobalMax(RealF &); | ||||||
|  |   void GlobalSum(RealF &); | ||||||
|  |   void GlobalSumVector(RealF *,int N); | ||||||
|  |   void GlobalSum(RealD &); | ||||||
|  |   void GlobalSumVector(RealD *,int N); | ||||||
|  |   void GlobalSum(uint32_t &); | ||||||
|  |   void GlobalSum(uint64_t &); | ||||||
|  |   void GlobalSumVector(uint64_t*,int N); | ||||||
|  |   void GlobalSum(ComplexF &c); | ||||||
|  |   void GlobalSumVector(ComplexF *c,int N); | ||||||
|  |   void GlobalSum(ComplexD &c); | ||||||
|  |   void GlobalSumVector(ComplexD *c,int N); | ||||||
|  |   void GlobalXOR(uint32_t &); | ||||||
|  |   void GlobalXOR(uint64_t &); | ||||||
|  |    | ||||||
|  |   template<class obj> void GlobalSum(obj &o){ | ||||||
|  |     typedef typename obj::scalar_type scalar_type; | ||||||
|  |     int words = sizeof(obj)/sizeof(scalar_type); | ||||||
|  |     scalar_type * ptr = (scalar_type *)& o; | ||||||
|  |     GlobalSumVector(ptr,words); | ||||||
|  |   } | ||||||
|  |    | ||||||
|  |   //////////////////////////////////////////////////////////// | ||||||
|  |   // Face exchange, buffer swap in translational invariant way | ||||||
|  |   //////////////////////////////////////////////////////////// | ||||||
|  |   void SendToRecvFrom(void *xmit, | ||||||
|  | 		      int xmit_to_rank, | ||||||
|  | 		      void *recv, | ||||||
|  | 		      int recv_from_rank, | ||||||
|  | 		      int bytes); | ||||||
|  |    | ||||||
|  |   double StencilSendToRecvFrom(void *xmit, | ||||||
|  | 			       int xmit_to_rank, | ||||||
|  | 			       void *recv, | ||||||
|  | 			       int recv_from_rank, | ||||||
|  | 			       int bytes,int dir); | ||||||
|  |  | ||||||
|  |   double StencilSendToRecvFromBegin(std::vector<CommsRequest_t> &list, | ||||||
|  | 				    void *xmit, | ||||||
|  | 				    int xmit_to_rank, | ||||||
|  | 				    void *recv, | ||||||
|  | 				    int recv_from_rank, | ||||||
|  | 				    int bytes,int dir); | ||||||
|  |    | ||||||
|  |    | ||||||
|  |   void StencilSendToRecvFromComplete(std::vector<CommsRequest_t> &waitall,int i); | ||||||
|  |   void StencilBarrier(void); | ||||||
|  |  | ||||||
|  |   //////////////////////////////////////////////////////////// | ||||||
|  |   // Barrier | ||||||
|  |   //////////////////////////////////////////////////////////// | ||||||
|  |   void Barrier(void); | ||||||
|  |    | ||||||
|  |   //////////////////////////////////////////////////////////// | ||||||
|  |   // Broadcast a buffer and composite larger | ||||||
|  |   //////////////////////////////////////////////////////////// | ||||||
|  |   void Broadcast(int root,void* data, int bytes); | ||||||
|  |  | ||||||
|  |   //////////////////////////////////////////////////////////// | ||||||
|  |   // All2All down one dimension | ||||||
|  |   //////////////////////////////////////////////////////////// | ||||||
|  |   template<class T> void AllToAll(int dim,std::vector<T> &in, std::vector<T> &out){ | ||||||
|  |     assert(dim>=0); | ||||||
|  |     assert(dim<_ndimension); | ||||||
|  |     assert(in.size()==out.size()); | ||||||
|  |     int numnode = _processors[dim]; | ||||||
|  |     uint64_t bytes=sizeof(T); | ||||||
|  |     uint64_t words=in.size()/numnode; | ||||||
|  |     assert(numnode * words == in.size()); | ||||||
|  |     assert(words < (1ULL<<31)); | ||||||
|  |     AllToAll(dim,(void *)&in[0],(void *)&out[0],words,bytes); | ||||||
|  |   } | ||||||
|  |   void AllToAll(int dim  ,void *in,void *out,uint64_t words,uint64_t bytes); | ||||||
|  |   void AllToAll(void  *in,void *out,uint64_t words         ,uint64_t bytes); | ||||||
|  |    | ||||||
|  |   template<class obj> void Broadcast(int root,obj &data) | ||||||
|  |   { | ||||||
|  |     Broadcast(root,(void *)&data,sizeof(data)); | ||||||
|  |   } | ||||||
|  |  | ||||||
|  | };  | ||||||
|  |  | ||||||
|  | NAMESPACE_END(Grid); | ||||||
|  |  | ||||||
|  | #endif | ||||||
							
								
								
									
										482
									
								
								Grid/communicator/Communicator_mpi3.cc
									
									
									
									
									
										Normal file
									
								
							
							
						
						
									
										482
									
								
								Grid/communicator/Communicator_mpi3.cc
									
									
									
									
									
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							| @@ -0,0 +1,482 @@ | |||||||
|  | /************************************************************************************* | ||||||
|  |  | ||||||
|  |     Grid physics library, www.github.com/paboyle/Grid | ||||||
|  |  | ||||||
|  |     Source file: ./lib/communicator/Communicator_mpi.cc | ||||||
|  |  | ||||||
|  |     Copyright (C) 2015 | ||||||
|  |  | ||||||
|  | Author: Peter Boyle <paboyle@ph.ed.ac.uk> | ||||||
|  |  | ||||||
|  |     This program is free software; you can redistribute it and/or modify | ||||||
|  |     it under the terms of the GNU General Public License as published by | ||||||
|  |     the Free Software Foundation; either version 2 of the License, or | ||||||
|  |     (at your option) any later version. | ||||||
|  |  | ||||||
|  |     This program is distributed in the hope that it will be useful, | ||||||
|  |     but WITHOUT ANY WARRANTY; without even the implied warranty of | ||||||
|  |     MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the | ||||||
|  |     GNU General Public License for more details. | ||||||
|  |  | ||||||
|  |     You should have received a copy of the GNU General Public License along | ||||||
|  |     with this program; if not, write to the Free Software Foundation, Inc., | ||||||
|  |     51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. | ||||||
|  |  | ||||||
|  |     See the full license in the file "LICENSE" in the top level distribution directory | ||||||
|  | *************************************************************************************/ | ||||||
|  | /*  END LEGAL */ | ||||||
|  | #include <Grid/GridCore.h> | ||||||
|  | #include <Grid/communicator/SharedMemory.h> | ||||||
|  |  | ||||||
|  | NAMESPACE_BEGIN(Grid); | ||||||
|  |  | ||||||
|  | Grid_MPI_Comm       CartesianCommunicator::communicator_world; | ||||||
|  |  | ||||||
|  | //////////////////////////////////////////// | ||||||
|  | // First initialise of comms system | ||||||
|  | //////////////////////////////////////////// | ||||||
|  | void CartesianCommunicator::Init(int *argc, char ***argv) | ||||||
|  | { | ||||||
|  |  | ||||||
|  |   int flag; | ||||||
|  |   int provided; | ||||||
|  |  | ||||||
|  |   MPI_Initialized(&flag); // needed to coexist with other libs apparently | ||||||
|  |   if ( !flag ) { | ||||||
|  |  | ||||||
|  | #ifndef GRID_COMMS_THREADS | ||||||
|  |     nCommThreads=1; | ||||||
|  |     // wrong results here too | ||||||
|  |     // For now: comms-overlap leads to wrong results in Benchmark_wilson even on single node MPI runs | ||||||
|  |     // other comms schemes are ok | ||||||
|  |     MPI_Init_thread(argc,argv,MPI_THREAD_SERIALIZED,&provided); | ||||||
|  | #else | ||||||
|  |     MPI_Init_thread(argc,argv,MPI_THREAD_MULTIPLE,&provided); | ||||||
|  | #endif | ||||||
|  |     //If only 1 comms thread we require any threading mode other than SINGLE, but for multiple comms threads we need MULTIPLE | ||||||
|  |     if( (nCommThreads == 1) && (provided == MPI_THREAD_SINGLE) ) { | ||||||
|  |       assert(0); | ||||||
|  |     } | ||||||
|  |  | ||||||
|  |     if( (nCommThreads > 1) && (provided != MPI_THREAD_MULTIPLE) ) { | ||||||
|  |       assert(0); | ||||||
|  |     } | ||||||
|  |   } | ||||||
|  |  | ||||||
|  |   // Never clean up as done once. | ||||||
|  |   MPI_Comm_dup (MPI_COMM_WORLD,&communicator_world); | ||||||
|  |  | ||||||
|  |   Grid_quiesce_nodes(); | ||||||
|  |   GlobalSharedMemory::Init(communicator_world); | ||||||
|  |   GlobalSharedMemory::SharedMemoryAllocate( | ||||||
|  | 		   GlobalSharedMemory::MAX_MPI_SHM_BYTES, | ||||||
|  | 		   GlobalSharedMemory::Hugepages); | ||||||
|  |   Grid_unquiesce_nodes(); | ||||||
|  | } | ||||||
|  |  | ||||||
|  | /////////////////////////////////////////////////////////////////////////// | ||||||
|  | // Use cartesian communicators now even in MPI3 | ||||||
|  | /////////////////////////////////////////////////////////////////////////// | ||||||
|  | void CartesianCommunicator::ShiftedRanks(int dim,int shift,int &source,int &dest) | ||||||
|  | { | ||||||
|  |   int ierr=MPI_Cart_shift(communicator,dim,shift,&source,&dest); | ||||||
|  |   assert(ierr==0); | ||||||
|  | } | ||||||
|  | int CartesianCommunicator::RankFromProcessorCoor(Coordinate &coor) | ||||||
|  | { | ||||||
|  |   int rank; | ||||||
|  |   int ierr=MPI_Cart_rank  (communicator, &coor[0], &rank); | ||||||
|  |   assert(ierr==0); | ||||||
|  |   return rank; | ||||||
|  | } | ||||||
|  | void  CartesianCommunicator::ProcessorCoorFromRank(int rank, Coordinate &coor) | ||||||
|  | { | ||||||
|  |   coor.resize(_ndimension); | ||||||
|  |   int ierr=MPI_Cart_coords  (communicator, rank, _ndimension,&coor[0]); | ||||||
|  |   assert(ierr==0); | ||||||
|  | } | ||||||
|  |  | ||||||
|  | //////////////////////////////////////////////////////////////////////////////////////////////////////// | ||||||
|  | // Initialises from communicator_world | ||||||
|  | //////////////////////////////////////////////////////////////////////////////////////////////////////// | ||||||
|  | CartesianCommunicator::CartesianCommunicator(const Coordinate &processors) | ||||||
|  | { | ||||||
|  |   MPI_Comm optimal_comm; | ||||||
|  |   //////////////////////////////////////////////////// | ||||||
|  |   // Remap using the shared memory optimising routine | ||||||
|  |   // The remap creates a comm which must be freed | ||||||
|  |   //////////////////////////////////////////////////// | ||||||
|  |   GlobalSharedMemory::OptimalCommunicator    (processors,optimal_comm); | ||||||
|  |   InitFromMPICommunicator(processors,optimal_comm); | ||||||
|  |   SetCommunicator(optimal_comm); | ||||||
|  |   /////////////////////////////////////////////////// | ||||||
|  |   // Free the temp communicator | ||||||
|  |   /////////////////////////////////////////////////// | ||||||
|  |   MPI_Comm_free(&optimal_comm); | ||||||
|  | } | ||||||
|  |  | ||||||
|  | ////////////////////////////////// | ||||||
|  | // Try to subdivide communicator | ||||||
|  | ////////////////////////////////// | ||||||
|  | CartesianCommunicator::CartesianCommunicator(const Coordinate &processors,const CartesianCommunicator &parent,int &srank) | ||||||
|  | { | ||||||
|  |   _ndimension = processors.size();  assert(_ndimension>=1); | ||||||
|  |   int parent_ndimension = parent._ndimension; assert(_ndimension >= parent._ndimension); | ||||||
|  |   Coordinate parent_processor_coor(_ndimension,0); | ||||||
|  |   Coordinate parent_processors    (_ndimension,1); | ||||||
|  |  | ||||||
|  |   // Can make 5d grid from 4d etc... | ||||||
|  |   int pad = _ndimension-parent_ndimension; | ||||||
|  |   for(int d=0;d<parent_ndimension;d++){ | ||||||
|  |     parent_processor_coor[pad+d]=parent._processor_coor[d]; | ||||||
|  |     parent_processors    [pad+d]=parent._processors[d]; | ||||||
|  |   } | ||||||
|  |  | ||||||
|  |   ////////////////////////////////////////////////////////////////////////////////////////////////////// | ||||||
|  |   // split the communicator | ||||||
|  |   ////////////////////////////////////////////////////////////////////////////////////////////////////// | ||||||
|  |   //  int Nparent = parent._processors ; | ||||||
|  |   int Nparent; | ||||||
|  |   MPI_Comm_size(parent.communicator,&Nparent); | ||||||
|  |  | ||||||
|  |   int childsize=1; | ||||||
|  |   for(int d=0;d<processors.size();d++) { | ||||||
|  |     childsize *= processors[d]; | ||||||
|  |   } | ||||||
|  |   int Nchild = Nparent/childsize; | ||||||
|  |   assert (childsize * Nchild == Nparent); | ||||||
|  |  | ||||||
|  |   Coordinate ccoor(_ndimension); // coor within subcommunicator | ||||||
|  |   Coordinate scoor(_ndimension); // coor of split within parent | ||||||
|  |   Coordinate ssize(_ndimension); // coor of split within parent | ||||||
|  |  | ||||||
|  |   for(int d=0;d<_ndimension;d++){ | ||||||
|  |     ccoor[d] = parent_processor_coor[d] % processors[d]; | ||||||
|  |     scoor[d] = parent_processor_coor[d] / processors[d]; | ||||||
|  |     ssize[d] = parent_processors[d]     / processors[d]; | ||||||
|  |   } | ||||||
|  |  | ||||||
|  |   // rank within subcomm ; srank is rank of subcomm within blocks of subcomms | ||||||
|  |   int crank; | ||||||
|  |   // Mpi uses the reverse Lexico convention to us; so reversed routines called | ||||||
|  |   Lexicographic::IndexFromCoorReversed(ccoor,crank,processors); // processors is the split grid dimensions | ||||||
|  |   Lexicographic::IndexFromCoorReversed(scoor,srank,ssize);      // ssize is the number of split grids | ||||||
|  |  | ||||||
|  |   MPI_Comm comm_split; | ||||||
|  |   if ( Nchild > 1 ) { | ||||||
|  |  | ||||||
|  |     //////////////////////////////////////////////////////////////// | ||||||
|  |     // Split the communicator | ||||||
|  |     //////////////////////////////////////////////////////////////// | ||||||
|  |     int ierr= MPI_Comm_split(parent.communicator,srank,crank,&comm_split); | ||||||
|  |     assert(ierr==0); | ||||||
|  |  | ||||||
|  |   } else { | ||||||
|  |     srank = 0; | ||||||
|  |     int ierr = MPI_Comm_dup (parent.communicator,&comm_split); | ||||||
|  |     assert(ierr==0); | ||||||
|  |   } | ||||||
|  |  | ||||||
|  |   ////////////////////////////////////////////////////////////////////////////////////////////////////// | ||||||
|  |   // Set up from the new split communicator | ||||||
|  |   ////////////////////////////////////////////////////////////////////////////////////////////////////// | ||||||
|  |   InitFromMPICommunicator(processors,comm_split); | ||||||
|  |  | ||||||
|  |   ////////////////////////////////////////////////////////////////////////////////////////////////////// | ||||||
|  |   // Take the right SHM buffers | ||||||
|  |   ////////////////////////////////////////////////////////////////////////////////////////////////////// | ||||||
|  |   SetCommunicator(comm_split); | ||||||
|  |  | ||||||
|  |   /////////////////////////////////////////////// | ||||||
|  |   // Free the temp communicator | ||||||
|  |   /////////////////////////////////////////////// | ||||||
|  |   MPI_Comm_free(&comm_split); | ||||||
|  |  | ||||||
|  |   if(0){ | ||||||
|  |     std::cout << " ndim " <<_ndimension<<" " << parent._ndimension << std::endl; | ||||||
|  |     for(int d=0;d<processors.size();d++){ | ||||||
|  |       std::cout << d<< " " << _processor_coor[d] <<" " <<  ccoor[d]<<std::endl; | ||||||
|  |     } | ||||||
|  |   } | ||||||
|  |   for(int d=0;d<processors.size();d++){ | ||||||
|  |     assert(_processor_coor[d] == ccoor[d] ); | ||||||
|  |   } | ||||||
|  | } | ||||||
|  |  | ||||||
|  | void CartesianCommunicator::InitFromMPICommunicator(const Coordinate &processors, MPI_Comm communicator_base) | ||||||
|  | { | ||||||
|  |   //////////////////////////////////////////////////// | ||||||
|  |   // Creates communicator, and the communicator_halo | ||||||
|  |   //////////////////////////////////////////////////// | ||||||
|  |   _ndimension = processors.size(); | ||||||
|  |   _processor_coor.resize(_ndimension); | ||||||
|  |  | ||||||
|  |   ///////////////////////////////// | ||||||
|  |   // Count the requested nodes | ||||||
|  |   ///////////////////////////////// | ||||||
|  |   _Nprocessors=1; | ||||||
|  |   _processors = processors; | ||||||
|  |   for(int i=0;i<_ndimension;i++){ | ||||||
|  |     _Nprocessors*=_processors[i]; | ||||||
|  |   } | ||||||
|  |  | ||||||
|  |   Coordinate periodic(_ndimension,1); | ||||||
|  |   MPI_Cart_create(communicator_base, _ndimension,&_processors[0],&periodic[0],0,&communicator); | ||||||
|  |   MPI_Comm_rank(communicator,&_processor); | ||||||
|  |   MPI_Cart_coords(communicator,_processor,_ndimension,&_processor_coor[0]); | ||||||
|  |  | ||||||
|  |   if ( 0 && (communicator_base != communicator_world) ) { | ||||||
|  |     std::cout << "InitFromMPICommunicator Cartesian communicator created with a non-world communicator"<<std::endl; | ||||||
|  |     std::cout << " new communicator rank "<<_processor<< " coor ["<<_ndimension<<"] "; | ||||||
|  |     for(int d=0;d<_processors.size();d++){ | ||||||
|  |       std::cout << _processor_coor[d]<<" "; | ||||||
|  |     } | ||||||
|  |     std::cout << std::endl; | ||||||
|  |   } | ||||||
|  |  | ||||||
|  |   int Size; | ||||||
|  |   MPI_Comm_size(communicator,&Size); | ||||||
|  |  | ||||||
|  |   communicator_halo.resize (2*_ndimension); | ||||||
|  |   for(int i=0;i<_ndimension*2;i++){ | ||||||
|  |     MPI_Comm_dup(communicator,&communicator_halo[i]); | ||||||
|  |   } | ||||||
|  |   assert(Size==_Nprocessors); | ||||||
|  | } | ||||||
|  |  | ||||||
|  | CartesianCommunicator::~CartesianCommunicator() | ||||||
|  | { | ||||||
|  |   int MPI_is_finalised; | ||||||
|  |   MPI_Finalized(&MPI_is_finalised); | ||||||
|  |   if (communicator && !MPI_is_finalised) { | ||||||
|  |     MPI_Comm_free(&communicator); | ||||||
|  |     for(int i=0;i<communicator_halo.size();i++){ | ||||||
|  |       MPI_Comm_free(&communicator_halo[i]); | ||||||
|  |     } | ||||||
|  |   } | ||||||
|  | } | ||||||
|  | void CartesianCommunicator::GlobalSum(uint32_t &u){ | ||||||
|  |   int ierr=MPI_Allreduce(MPI_IN_PLACE,&u,1,MPI_UINT32_T,MPI_SUM,communicator); | ||||||
|  |   assert(ierr==0); | ||||||
|  | } | ||||||
|  | void CartesianCommunicator::GlobalSum(uint64_t &u){ | ||||||
|  |   int ierr=MPI_Allreduce(MPI_IN_PLACE,&u,1,MPI_UINT64_T,MPI_SUM,communicator); | ||||||
|  |   assert(ierr==0); | ||||||
|  | } | ||||||
|  | void CartesianCommunicator::GlobalSumVector(uint64_t* u,int N){ | ||||||
|  |   int ierr=MPI_Allreduce(MPI_IN_PLACE,u,N,MPI_UINT64_T,MPI_SUM,communicator); | ||||||
|  |   assert(ierr==0); | ||||||
|  | } | ||||||
|  | void CartesianCommunicator::GlobalXOR(uint32_t &u){ | ||||||
|  |   int ierr=MPI_Allreduce(MPI_IN_PLACE,&u,1,MPI_UINT32_T,MPI_BXOR,communicator); | ||||||
|  |   assert(ierr==0); | ||||||
|  | } | ||||||
|  | void CartesianCommunicator::GlobalXOR(uint64_t &u){ | ||||||
|  |   int ierr=MPI_Allreduce(MPI_IN_PLACE,&u,1,MPI_UINT64_T,MPI_BXOR,communicator); | ||||||
|  |   assert(ierr==0); | ||||||
|  | } | ||||||
|  | void CartesianCommunicator::GlobalMax(float &f) | ||||||
|  | { | ||||||
|  |   int ierr=MPI_Allreduce(MPI_IN_PLACE,&f,1,MPI_FLOAT,MPI_MAX,communicator); | ||||||
|  |   assert(ierr==0); | ||||||
|  | } | ||||||
|  | void CartesianCommunicator::GlobalMax(double &d) | ||||||
|  | { | ||||||
|  |   int ierr = MPI_Allreduce(MPI_IN_PLACE,&d,1,MPI_DOUBLE,MPI_MAX,communicator); | ||||||
|  |   assert(ierr==0); | ||||||
|  | } | ||||||
|  | void CartesianCommunicator::GlobalSum(float &f){ | ||||||
|  |   int ierr=MPI_Allreduce(MPI_IN_PLACE,&f,1,MPI_FLOAT,MPI_SUM,communicator); | ||||||
|  |   assert(ierr==0); | ||||||
|  | } | ||||||
|  | void CartesianCommunicator::GlobalSumVector(float *f,int N) | ||||||
|  | { | ||||||
|  |   int ierr=MPI_Allreduce(MPI_IN_PLACE,f,N,MPI_FLOAT,MPI_SUM,communicator); | ||||||
|  |   assert(ierr==0); | ||||||
|  | } | ||||||
|  | void CartesianCommunicator::GlobalSum(double &d) | ||||||
|  | { | ||||||
|  |   int ierr = MPI_Allreduce(MPI_IN_PLACE,&d,1,MPI_DOUBLE,MPI_SUM,communicator); | ||||||
|  |   assert(ierr==0); | ||||||
|  | } | ||||||
|  | void CartesianCommunicator::GlobalSumVector(double *d,int N) | ||||||
|  | { | ||||||
|  |   int ierr = MPI_Allreduce(MPI_IN_PLACE,d,N,MPI_DOUBLE,MPI_SUM,communicator); | ||||||
|  |   assert(ierr==0); | ||||||
|  | } | ||||||
|  | // Basic Halo comms primitive | ||||||
|  | void CartesianCommunicator::SendToRecvFrom(void *xmit, | ||||||
|  | 					   int dest, | ||||||
|  | 					   void *recv, | ||||||
|  | 					   int from, | ||||||
|  | 					   int bytes) | ||||||
|  | { | ||||||
|  |   std::vector<CommsRequest_t> reqs(0); | ||||||
|  |   unsigned long  xcrc = crc32(0L, Z_NULL, 0); | ||||||
|  |   unsigned long  rcrc = crc32(0L, Z_NULL, 0); | ||||||
|  |  | ||||||
|  |   int myrank = _processor; | ||||||
|  |   int ierr; | ||||||
|  |  | ||||||
|  |   // Enforce no UVM in comms, device or host OK | ||||||
|  |   assert(acceleratorIsCommunicable(xmit)); | ||||||
|  |   assert(acceleratorIsCommunicable(recv)); | ||||||
|  |  | ||||||
|  |   // Give the CPU to MPI immediately; can use threads to overlap optionally | ||||||
|  |   //  printf("proc %d SendToRecvFrom %d bytes Sendrecv \n",_processor,bytes); | ||||||
|  |   ierr=MPI_Sendrecv(xmit,bytes,MPI_CHAR,dest,myrank, | ||||||
|  | 		    recv,bytes,MPI_CHAR,from, from, | ||||||
|  | 		    communicator,MPI_STATUS_IGNORE); | ||||||
|  |   assert(ierr==0); | ||||||
|  |  | ||||||
|  |   //  xcrc = crc32(xcrc,(unsigned char *)xmit,bytes); | ||||||
|  |   //  rcrc = crc32(rcrc,(unsigned char *)recv,bytes); | ||||||
|  |   //  printf("proc %d SendToRecvFrom %d bytes xcrc %lx rcrc %lx\n",_processor,bytes,xcrc,rcrc); fflush | ||||||
|  | } | ||||||
|  | // Basic Halo comms primitive | ||||||
|  | double CartesianCommunicator::StencilSendToRecvFrom( void *xmit, | ||||||
|  | 						     int dest, | ||||||
|  | 						     void *recv, | ||||||
|  | 						     int from, | ||||||
|  | 						     int bytes,int dir) | ||||||
|  | { | ||||||
|  |   std::vector<CommsRequest_t> list; | ||||||
|  |   double offbytes = StencilSendToRecvFromBegin(list,xmit,dest,recv,from,bytes,dir); | ||||||
|  |   StencilSendToRecvFromComplete(list,dir); | ||||||
|  |   return offbytes; | ||||||
|  | } | ||||||
|  |  | ||||||
|  | double CartesianCommunicator::StencilSendToRecvFromBegin(std::vector<CommsRequest_t> &list, | ||||||
|  | 							 void *xmit, | ||||||
|  | 							 int dest, | ||||||
|  | 							 void *recv, | ||||||
|  | 							 int from, | ||||||
|  | 							 int bytes,int dir) | ||||||
|  | { | ||||||
|  |   int ncomm  =communicator_halo.size(); | ||||||
|  |   int commdir=dir%ncomm; | ||||||
|  |  | ||||||
|  |   MPI_Request xrq; | ||||||
|  |   MPI_Request rrq; | ||||||
|  |  | ||||||
|  |   int ierr; | ||||||
|  |   int gdest = ShmRanks[dest]; | ||||||
|  |   int gfrom = ShmRanks[from]; | ||||||
|  |   int gme   = ShmRanks[_processor]; | ||||||
|  |  | ||||||
|  |   assert(dest != _processor); | ||||||
|  |   assert(from != _processor); | ||||||
|  |   assert(gme  == ShmRank); | ||||||
|  |   double off_node_bytes=0.0; | ||||||
|  |   int tag; | ||||||
|  |  | ||||||
|  |   if ( (gfrom ==MPI_UNDEFINED) || Stencil_force_mpi ) { | ||||||
|  |     tag= dir+from*32; | ||||||
|  |     ierr=MPI_Irecv(recv, bytes, MPI_CHAR,from,tag,communicator_halo[commdir],&rrq); | ||||||
|  |     assert(ierr==0); | ||||||
|  |     list.push_back(rrq); | ||||||
|  |     off_node_bytes+=bytes; | ||||||
|  |   } | ||||||
|  |  | ||||||
|  |   if ( (gdest == MPI_UNDEFINED) || Stencil_force_mpi ) { | ||||||
|  |     tag= dir+_processor*32; | ||||||
|  |     ierr =MPI_Isend(xmit, bytes, MPI_CHAR,dest,tag,communicator_halo[commdir],&xrq); | ||||||
|  |     assert(ierr==0); | ||||||
|  |     list.push_back(xrq); | ||||||
|  |     off_node_bytes+=bytes; | ||||||
|  |   } else { | ||||||
|  |     // TODO : make a OMP loop on CPU, call threaded bcopy | ||||||
|  |     void *shm = (void *) this->ShmBufferTranslate(dest,recv); | ||||||
|  |     assert(shm!=NULL); | ||||||
|  |     //    std::cout <<"acceleratorCopyDeviceToDeviceAsynch"<< std::endl; | ||||||
|  |     acceleratorCopyDeviceToDeviceAsynch(xmit,shm,bytes); | ||||||
|  |   } | ||||||
|  |  | ||||||
|  |   if ( CommunicatorPolicy == CommunicatorPolicySequential ) { | ||||||
|  |     this->StencilSendToRecvFromComplete(list,dir); | ||||||
|  |   } | ||||||
|  |  | ||||||
|  |   return off_node_bytes; | ||||||
|  | } | ||||||
|  | void CartesianCommunicator::StencilSendToRecvFromComplete(std::vector<CommsRequest_t> &list,int dir) | ||||||
|  | { | ||||||
|  |   //   std::cout << "Copy Synchronised\n"<<std::endl; | ||||||
|  |   acceleratorCopySynchronise(); | ||||||
|  |  | ||||||
|  |   int nreq=list.size(); | ||||||
|  |  | ||||||
|  |   if (nreq==0) return; | ||||||
|  |  | ||||||
|  |   std::vector<MPI_Status> status(nreq); | ||||||
|  |   int ierr = MPI_Waitall(nreq,&list[0],&status[0]); | ||||||
|  |   assert(ierr==0); | ||||||
|  |   list.resize(0); | ||||||
|  | } | ||||||
|  | void CartesianCommunicator::StencilBarrier(void) | ||||||
|  | { | ||||||
|  |   MPI_Barrier  (ShmComm); | ||||||
|  | } | ||||||
|  | //void CartesianCommunicator::SendToRecvFromComplete(std::vector<CommsRequest_t> &list) | ||||||
|  | //{ | ||||||
|  | //} | ||||||
|  | void CartesianCommunicator::Barrier(void) | ||||||
|  | { | ||||||
|  |   int ierr = MPI_Barrier(communicator); | ||||||
|  |   assert(ierr==0); | ||||||
|  | } | ||||||
|  | void CartesianCommunicator::Broadcast(int root,void* data, int bytes) | ||||||
|  | { | ||||||
|  |   int ierr=MPI_Bcast(data, | ||||||
|  | 		     bytes, | ||||||
|  | 		     MPI_BYTE, | ||||||
|  | 		     root, | ||||||
|  | 		     communicator); | ||||||
|  |   assert(ierr==0); | ||||||
|  | } | ||||||
|  | int CartesianCommunicator::RankWorld(void){ | ||||||
|  |   int r; | ||||||
|  |   MPI_Comm_rank(communicator_world,&r); | ||||||
|  |   return r; | ||||||
|  | } | ||||||
|  | void CartesianCommunicator::BroadcastWorld(int root,void* data, int bytes) | ||||||
|  | { | ||||||
|  |   int ierr= MPI_Bcast(data, | ||||||
|  | 		      bytes, | ||||||
|  | 		      MPI_BYTE, | ||||||
|  | 		      root, | ||||||
|  | 		      communicator_world); | ||||||
|  |   assert(ierr==0); | ||||||
|  | } | ||||||
|  |  | ||||||
|  | void CartesianCommunicator::AllToAll(int dim,void  *in,void *out,uint64_t words,uint64_t bytes) | ||||||
|  | { | ||||||
|  |   Coordinate row(_ndimension,1); | ||||||
|  |   assert(dim>=0 && dim<_ndimension); | ||||||
|  |  | ||||||
|  |   //  Split the communicator | ||||||
|  |   row[dim] = _processors[dim]; | ||||||
|  |  | ||||||
|  |   int me; | ||||||
|  |   CartesianCommunicator Comm(row,*this,me); | ||||||
|  |   Comm.AllToAll(in,out,words,bytes); | ||||||
|  | } | ||||||
|  | void CartesianCommunicator::AllToAll(void  *in,void *out,uint64_t words,uint64_t bytes) | ||||||
|  | { | ||||||
|  |   // MPI is a pain and uses "int" arguments | ||||||
|  |   // 64*64*64*128*16 == 500Million elements of data. | ||||||
|  |   // When 24*4 bytes multiples get 50x 10^9 >>> 2x10^9 Y2K bug. | ||||||
|  |   // (Turns up on 32^3 x 64 Gparity too) | ||||||
|  |   MPI_Datatype object; | ||||||
|  |   int iwords; | ||||||
|  |   int ibytes; | ||||||
|  |   iwords = words; | ||||||
|  |   ibytes = bytes; | ||||||
|  |   assert(words == iwords); // safe to cast to int ? | ||||||
|  |   assert(bytes == ibytes); // safe to cast to int ? | ||||||
|  |   MPI_Type_contiguous(ibytes,MPI_BYTE,&object); | ||||||
|  |   MPI_Type_commit(&object); | ||||||
|  |   MPI_Alltoall(in,iwords,object,out,iwords,object,communicator); | ||||||
|  |   MPI_Type_free(&object); | ||||||
|  | } | ||||||
|  |  | ||||||
|  | NAMESPACE_END(Grid); | ||||||
							
								
								
									
										138
									
								
								Grid/communicator/Communicator_none.cc
									
									
									
									
									
										Normal file
									
								
							
							
						
						
									
										138
									
								
								Grid/communicator/Communicator_none.cc
									
									
									
									
									
										Normal file
									
								
							| @@ -0,0 +1,138 @@ | |||||||
|  | /************************************************************************************* | ||||||
|  |  | ||||||
|  |     Grid physics library, www.github.com/paboyle/Grid  | ||||||
|  |  | ||||||
|  |     Source file: ./lib/communicator/Communicator_none.cc | ||||||
|  |  | ||||||
|  |     Copyright (C) 2015 | ||||||
|  |  | ||||||
|  | Author: Peter Boyle <paboyle@ph.ed.ac.uk> | ||||||
|  |  | ||||||
|  |     This program is free software; you can redistribute it and/or modify | ||||||
|  |     it under the terms of the GNU General Public License as published by | ||||||
|  |     the Free Software Foundation; either version 2 of the License, or | ||||||
|  |     (at your option) any later version. | ||||||
|  |  | ||||||
|  |     This program is distributed in the hope that it will be useful, | ||||||
|  |     but WITHOUT ANY WARRANTY; without even the implied warranty of | ||||||
|  |     MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the | ||||||
|  |     GNU General Public License for more details. | ||||||
|  |  | ||||||
|  |     You should have received a copy of the GNU General Public License along | ||||||
|  |     with this program; if not, write to the Free Software Foundation, Inc., | ||||||
|  |     51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. | ||||||
|  |  | ||||||
|  |     See the full license in the file "LICENSE" in the top level distribution directory | ||||||
|  | *************************************************************************************/ | ||||||
|  | /*  END LEGAL */ | ||||||
|  | #include <Grid/GridCore.h> | ||||||
|  |  | ||||||
|  | NAMESPACE_BEGIN(Grid); | ||||||
|  |  | ||||||
|  | /////////////////////////////////////////////////////////////////////////////////////////////////// | ||||||
|  | // Info that is setup once and indept of cartesian layout | ||||||
|  | /////////////////////////////////////////////////////////////////////////////////////////////////// | ||||||
|  | Grid_MPI_Comm       CartesianCommunicator::communicator_world; | ||||||
|  |  | ||||||
|  | void CartesianCommunicator::Init(int *argc, char *** arv) | ||||||
|  | { | ||||||
|  |   GlobalSharedMemory::Init(communicator_world); | ||||||
|  |   GlobalSharedMemory::SharedMemoryAllocate( | ||||||
|  | 					   GlobalSharedMemory::MAX_MPI_SHM_BYTES, | ||||||
|  | 					   GlobalSharedMemory::Hugepages); | ||||||
|  | } | ||||||
|  |  | ||||||
|  | CartesianCommunicator::CartesianCommunicator(const Coordinate &processors,const CartesianCommunicator &parent,int &srank)  | ||||||
|  |   : CartesianCommunicator(processors)  | ||||||
|  | { | ||||||
|  |   srank=0; | ||||||
|  |   SetCommunicator(communicator_world); | ||||||
|  | } | ||||||
|  |  | ||||||
|  | CartesianCommunicator::CartesianCommunicator(const Coordinate &processors) | ||||||
|  | { | ||||||
|  |   _processors = processors; | ||||||
|  |   _ndimension = processors.size();  assert(_ndimension>=1); | ||||||
|  |   _processor_coor.resize(_ndimension); | ||||||
|  |    | ||||||
|  |   // Require 1^N processor grid for fake | ||||||
|  |   _Nprocessors=1; | ||||||
|  |   _processor = 0; | ||||||
|  |   for(int d=0;d<_ndimension;d++) { | ||||||
|  |     assert(_processors[d]==1); | ||||||
|  |     _processor_coor[d] = 0; | ||||||
|  |   } | ||||||
|  |   SetCommunicator(communicator_world); | ||||||
|  | } | ||||||
|  |  | ||||||
|  | CartesianCommunicator::~CartesianCommunicator(){} | ||||||
|  |  | ||||||
|  | void CartesianCommunicator::GlobalMax(float &){} | ||||||
|  | void CartesianCommunicator::GlobalMax(double &){} | ||||||
|  | void CartesianCommunicator::GlobalSum(float &){} | ||||||
|  | void CartesianCommunicator::GlobalSumVector(float *,int N){} | ||||||
|  | void CartesianCommunicator::GlobalSum(double &){} | ||||||
|  | void CartesianCommunicator::GlobalSumVector(double *,int N){} | ||||||
|  | void CartesianCommunicator::GlobalSum(uint32_t &){} | ||||||
|  | void CartesianCommunicator::GlobalSum(uint64_t &){} | ||||||
|  | void CartesianCommunicator::GlobalSumVector(uint64_t *,int N){} | ||||||
|  | void CartesianCommunicator::GlobalXOR(uint32_t &){} | ||||||
|  | void CartesianCommunicator::GlobalXOR(uint64_t &){} | ||||||
|  |  | ||||||
|  |  | ||||||
|  | // Basic Halo comms primitive -- should never call in single node | ||||||
|  | void CartesianCommunicator::SendToRecvFrom(void *xmit, | ||||||
|  | 					   int dest, | ||||||
|  | 					   void *recv, | ||||||
|  | 					   int from, | ||||||
|  | 					   int bytes) | ||||||
|  | { | ||||||
|  |   assert(0); | ||||||
|  | } | ||||||
|  | void CartesianCommunicator::AllToAll(int dim,void  *in,void *out,uint64_t words,uint64_t bytes) | ||||||
|  | { | ||||||
|  |   bcopy(in,out,bytes*words); | ||||||
|  | } | ||||||
|  | void CartesianCommunicator::AllToAll(void  *in,void *out,uint64_t words,uint64_t bytes) | ||||||
|  | { | ||||||
|  |   bcopy(in,out,bytes*words); | ||||||
|  | } | ||||||
|  |  | ||||||
|  | int  CartesianCommunicator::RankWorld(void){return 0;} | ||||||
|  | void CartesianCommunicator::Barrier(void){} | ||||||
|  | void CartesianCommunicator::Broadcast(int root,void* data, int bytes) {} | ||||||
|  | void CartesianCommunicator::BroadcastWorld(int root,void* data, int bytes) { } | ||||||
|  | int  CartesianCommunicator::RankFromProcessorCoor(Coordinate &coor) {  return 0;} | ||||||
|  | void CartesianCommunicator::ProcessorCoorFromRank(int rank, Coordinate &coor){  coor = _processor_coor; } | ||||||
|  | void CartesianCommunicator::ShiftedRanks(int dim,int shift,int &source,int &dest) | ||||||
|  | { | ||||||
|  |   source =0; | ||||||
|  |   dest=0; | ||||||
|  | } | ||||||
|  |  | ||||||
|  | double CartesianCommunicator::StencilSendToRecvFrom( void *xmit, | ||||||
|  | 						     int xmit_to_rank, | ||||||
|  | 						     void *recv, | ||||||
|  | 						     int recv_from_rank, | ||||||
|  | 						     int bytes, int dir) | ||||||
|  | { | ||||||
|  |   return 2.0*bytes; | ||||||
|  | } | ||||||
|  | double CartesianCommunicator::StencilSendToRecvFromBegin(std::vector<CommsRequest_t> &list, | ||||||
|  | 							 void *xmit, | ||||||
|  | 							 int xmit_to_rank, | ||||||
|  | 							 void *recv, | ||||||
|  | 							 int recv_from_rank, | ||||||
|  | 							 int bytes, int dir) | ||||||
|  | { | ||||||
|  |   return 2.0*bytes; | ||||||
|  | } | ||||||
|  | void CartesianCommunicator::StencilSendToRecvFromComplete(std::vector<CommsRequest_t> &waitall,int dir) | ||||||
|  | { | ||||||
|  | } | ||||||
|  |  | ||||||
|  | void CartesianCommunicator::StencilBarrier(void){}; | ||||||
|  |  | ||||||
|  | NAMESPACE_END(Grid); | ||||||
|  |  | ||||||
|  |  | ||||||
							
								
								
									
										96
									
								
								Grid/communicator/SharedMemory.cc
									
									
									
									
									
										Normal file
									
								
							
							
						
						
									
										96
									
								
								Grid/communicator/SharedMemory.cc
									
									
									
									
									
										Normal file
									
								
							| @@ -0,0 +1,96 @@ | |||||||
|  | /************************************************************************************* | ||||||
|  |  | ||||||
|  |     Grid physics library, www.github.com/paboyle/Grid  | ||||||
|  |  | ||||||
|  |     Source file: ./lib/communicator/SharedMemory.cc | ||||||
|  |  | ||||||
|  |     Copyright (C) 2015 | ||||||
|  |  | ||||||
|  | Author: Peter Boyle <paboyle@ph.ed.ac.uk> | ||||||
|  |  | ||||||
|  |     This program is free software; you can redistribute it and/or modify | ||||||
|  |     it under the terms of the GNU General Public License as published by | ||||||
|  |     the Free Software Foundation; either version 2 of the License, or | ||||||
|  |     (at your option) any later version. | ||||||
|  |  | ||||||
|  |     This program is distributed in the hope that it will be useful, | ||||||
|  |     but WITHOUT ANY WARRANTY; without even the implied warranty of | ||||||
|  |     MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the | ||||||
|  |     GNU General Public License for more details. | ||||||
|  |  | ||||||
|  |     You should have received a copy of the GNU General Public License along | ||||||
|  |     with this program; if not, write to the Free Software Foundation, Inc., | ||||||
|  |     51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. | ||||||
|  |  | ||||||
|  |     See the full license in the file "LICENSE" in the top level distribution directory | ||||||
|  | *************************************************************************************/ | ||||||
|  | /*  END LEGAL */ | ||||||
|  |  | ||||||
|  | #include <Grid/GridCore.h> | ||||||
|  |  | ||||||
|  | NAMESPACE_BEGIN(Grid);  | ||||||
|  |  | ||||||
|  | // static data | ||||||
|  |  | ||||||
|  | int                 GlobalSharedMemory::HPEhypercube = 1; | ||||||
|  | uint64_t            GlobalSharedMemory::MAX_MPI_SHM_BYTES   = 1024LL*1024LL*1024LL;  | ||||||
|  | int                 GlobalSharedMemory::Hugepages = 0; | ||||||
|  | int                 GlobalSharedMemory::_ShmSetup; | ||||||
|  | int                 GlobalSharedMemory::_ShmAlloc; | ||||||
|  | uint64_t            GlobalSharedMemory::_ShmAllocBytes; | ||||||
|  |  | ||||||
|  | std::vector<void *> GlobalSharedMemory::WorldShmCommBufs; | ||||||
|  |  | ||||||
|  | Grid_MPI_Comm       GlobalSharedMemory::WorldShmComm; | ||||||
|  | int                 GlobalSharedMemory::WorldShmRank; | ||||||
|  | int                 GlobalSharedMemory::WorldShmSize; | ||||||
|  | std::vector<int>    GlobalSharedMemory::WorldShmRanks; | ||||||
|  |  | ||||||
|  | Grid_MPI_Comm       GlobalSharedMemory::WorldComm; | ||||||
|  | int                 GlobalSharedMemory::WorldSize; | ||||||
|  | int                 GlobalSharedMemory::WorldRank; | ||||||
|  |  | ||||||
|  | int                 GlobalSharedMemory::WorldNodes; | ||||||
|  | int                 GlobalSharedMemory::WorldNode; | ||||||
|  |  | ||||||
|  | void GlobalSharedMemory::SharedMemoryFree(void) | ||||||
|  | { | ||||||
|  |   assert(_ShmAlloc); | ||||||
|  |   assert(_ShmAllocBytes>0); | ||||||
|  |   for(int r=0;r<WorldShmSize;r++){ | ||||||
|  |     munmap(WorldShmCommBufs[r],_ShmAllocBytes); | ||||||
|  |   } | ||||||
|  |   _ShmAlloc = 0; | ||||||
|  |   _ShmAllocBytes = 0; | ||||||
|  | } | ||||||
|  | ///////////////////////////////// | ||||||
|  | // Alloc, free shmem region | ||||||
|  | ///////////////////////////////// | ||||||
|  | void *SharedMemory::ShmBufferMalloc(size_t bytes){ | ||||||
|  |   //  bytes = (bytes+sizeof(vRealD))&(~(sizeof(vRealD)-1));// align up bytes | ||||||
|  |   void *ptr = (void *)heap_top; | ||||||
|  |   heap_top  += bytes; | ||||||
|  |   heap_bytes+= bytes; | ||||||
|  |   if (heap_bytes >= heap_size) { | ||||||
|  |     std::cout<< " ShmBufferMalloc exceeded shared heap size -- try increasing with --shm <MB> flag" <<std::endl; | ||||||
|  |     std::cout<< " Parameter specified in units of MB (megabytes) " <<std::endl; | ||||||
|  |     std::cout<< " Current alloc is " << (bytes/(1024*1024)) <<"MB"<<std::endl; | ||||||
|  |     std::cout<< " Current bytes is " << (heap_bytes/(1024*1024)) <<"MB"<<std::endl; | ||||||
|  |     std::cout<< " Current heap  is " << (heap_size/(1024*1024)) <<"MB"<<std::endl; | ||||||
|  |     assert(heap_bytes<heap_size); | ||||||
|  |   } | ||||||
|  |   //std::cerr << "ShmBufferMalloc "<<std::hex<< ptr<<" - "<<((uint64_t)ptr+bytes)<<std::dec<<std::endl; | ||||||
|  |   return ptr; | ||||||
|  | } | ||||||
|  | void SharedMemory::ShmBufferFreeAll(void) {  | ||||||
|  |   heap_top  =(size_t)ShmBufferSelf(); | ||||||
|  |   heap_bytes=0; | ||||||
|  | } | ||||||
|  | void *SharedMemory::ShmBufferSelf(void) | ||||||
|  | { | ||||||
|  |   //std::cerr << "ShmBufferSelf "<<ShmRank<<" "<<std::hex<< ShmCommBufs[ShmRank] <<std::dec<<std::endl; | ||||||
|  |   return ShmCommBufs[ShmRank]; | ||||||
|  | } | ||||||
|  |  | ||||||
|  | NAMESPACE_END(Grid);  | ||||||
|  |  | ||||||
							
								
								
									
										163
									
								
								Grid/communicator/SharedMemory.h
									
									
									
									
									
										Normal file
									
								
							
							
						
						
									
										163
									
								
								Grid/communicator/SharedMemory.h
									
									
									
									
									
										Normal file
									
								
							| @@ -0,0 +1,163 @@ | |||||||
|  | /************************************************************************************* | ||||||
|  |  | ||||||
|  |     Grid physics library, www.github.com/paboyle/Grid  | ||||||
|  |  | ||||||
|  |     Source file: ./lib/communicator/SharedMemory.cc | ||||||
|  |  | ||||||
|  |     Copyright (C) 2015 | ||||||
|  |  | ||||||
|  | Author: Peter Boyle <paboyle@ph.ed.ac.uk> | ||||||
|  |  | ||||||
|  |     This program is free software; you can redistribute it and/or modify | ||||||
|  |     it under the terms of the GNU General Public License as published by | ||||||
|  |     the Free Software Foundation; either version 2 of the License, or | ||||||
|  |     (at your option) any later version. | ||||||
|  |  | ||||||
|  |     This program is distributed in the hope that it will be useful, | ||||||
|  |     but WITHOUT ANY WARRANTY; without even the implied warranty of | ||||||
|  |     MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the | ||||||
|  |     GNU General Public License for more details. | ||||||
|  |  | ||||||
|  |     You should have received a copy of the GNU General Public License along | ||||||
|  |     with this program; if not, write to the Free Software Foundation, Inc., | ||||||
|  |     51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. | ||||||
|  |  | ||||||
|  |     See the full license in the file "LICENSE" in the top level distribution directory | ||||||
|  | *************************************************************************************/ | ||||||
|  | /*  END LEGAL */ | ||||||
|  | #pragma once  | ||||||
|  |  | ||||||
|  | #include <Grid/GridCore.h> | ||||||
|  |  | ||||||
|  | #if defined (GRID_COMMS_MPI3)  | ||||||
|  | #include <mpi.h> | ||||||
|  | #endif  | ||||||
|  | #include <semaphore.h> | ||||||
|  | #include <fcntl.h> | ||||||
|  | #include <unistd.h> | ||||||
|  | #include <limits.h> | ||||||
|  | #include <sys/types.h> | ||||||
|  | #include <sys/ipc.h> | ||||||
|  | #include <sys/shm.h> | ||||||
|  | #include <sys/mman.h> | ||||||
|  | #include <zlib.h> | ||||||
|  |  | ||||||
|  | NAMESPACE_BEGIN(Grid); | ||||||
|  |  | ||||||
|  | #if defined (GRID_COMMS_MPI3)  | ||||||
|  | typedef MPI_Comm    Grid_MPI_Comm; | ||||||
|  | typedef MPI_Request CommsRequest_t; | ||||||
|  | #else  | ||||||
|  | typedef int CommsRequest_t; | ||||||
|  | typedef int Grid_MPI_Comm; | ||||||
|  | #endif | ||||||
|  |  | ||||||
|  | class GlobalSharedMemory { | ||||||
|  | private: | ||||||
|  |   static const int     MAXLOG2RANKSPERNODE = 16;             | ||||||
|  |  | ||||||
|  |  | ||||||
|  |   // Init once lock on the buffer allocation | ||||||
|  |   static int      _ShmSetup; | ||||||
|  |   static int      _ShmAlloc; | ||||||
|  |   static uint64_t _ShmAllocBytes; | ||||||
|  |  | ||||||
|  | public: | ||||||
|  |   /////////////////////////////////////// | ||||||
|  |   // HPE 8600 hypercube optimisation | ||||||
|  |   /////////////////////////////////////// | ||||||
|  |   static int HPEhypercube; | ||||||
|  |  | ||||||
|  |   static int      ShmSetup(void)      { return _ShmSetup; } | ||||||
|  |   static int      ShmAlloc(void)      { return _ShmAlloc; } | ||||||
|  |   static uint64_t ShmAllocBytes(void) { return _ShmAllocBytes; } | ||||||
|  |   static uint64_t      MAX_MPI_SHM_BYTES; | ||||||
|  |   static int           Hugepages; | ||||||
|  |  | ||||||
|  |   static std::vector<void *> WorldShmCommBufs; | ||||||
|  |  | ||||||
|  |   static Grid_MPI_Comm WorldComm; | ||||||
|  |   static int           WorldRank; | ||||||
|  |   static int           WorldSize; | ||||||
|  |  | ||||||
|  |   static Grid_MPI_Comm WorldShmComm; | ||||||
|  |   static int           WorldShmRank; | ||||||
|  |   static int           WorldShmSize; | ||||||
|  |  | ||||||
|  |   static int           WorldNodes; | ||||||
|  |   static int           WorldNode; | ||||||
|  |  | ||||||
|  |   static std::vector<int>  WorldShmRanks; | ||||||
|  |  | ||||||
|  |   ////////////////////////////////////////////////////////////////////////////////////// | ||||||
|  |   // Create an optimal reordered communicator that makes MPI_Cart_create get it right | ||||||
|  |   ////////////////////////////////////////////////////////////////////////////////////// | ||||||
|  |   static void Init(Grid_MPI_Comm comm); // Typically MPI_COMM_WORLD | ||||||
|  |   static void OptimalCommunicator            (const Coordinate &processors,Grid_MPI_Comm & optimal_comm);  // Turns MPI_COMM_WORLD into right layout for Cartesian | ||||||
|  |   static void OptimalCommunicatorHypercube   (const Coordinate &processors,Grid_MPI_Comm & optimal_comm);  // Turns MPI_COMM_WORLD into right layout for Cartesian | ||||||
|  |   static void OptimalCommunicatorSharedMemory(const Coordinate &processors,Grid_MPI_Comm & optimal_comm);  // Turns MPI_COMM_WORLD into right layout for Cartesian | ||||||
|  |   static void GetShmDims(const Coordinate &WorldDims,Coordinate &ShmDims); | ||||||
|  |   /////////////////////////////////////////////////// | ||||||
|  |   // Provide shared memory facilities off comm world | ||||||
|  |   /////////////////////////////////////////////////// | ||||||
|  |   static void SharedMemoryAllocate(uint64_t bytes, int flags); | ||||||
|  |   static void SharedMemoryFree(void); | ||||||
|  |   static void SharedMemoryCopy(void *dest,void *src,size_t bytes); | ||||||
|  |   static void SharedMemoryZero(void *dest,size_t bytes); | ||||||
|  |  | ||||||
|  | }; | ||||||
|  |  | ||||||
|  | ////////////////////////////// | ||||||
|  | // one per communicator | ||||||
|  | ////////////////////////////// | ||||||
|  | class SharedMemory  | ||||||
|  | { | ||||||
|  | private: | ||||||
|  |   static const int     MAXLOG2RANKSPERNODE = 16;             | ||||||
|  |  | ||||||
|  |   size_t heap_top; | ||||||
|  |   size_t heap_bytes; | ||||||
|  |   size_t heap_size; | ||||||
|  |  | ||||||
|  | protected: | ||||||
|  |  | ||||||
|  |   Grid_MPI_Comm    ShmComm; // for barriers | ||||||
|  |   int    ShmRank;  | ||||||
|  |   int    ShmSize; | ||||||
|  |   std::vector<void *> ShmCommBufs; | ||||||
|  |   std::vector<int>    ShmRanks;// Mapping comm ranks to Shm ranks | ||||||
|  |  | ||||||
|  | public: | ||||||
|  |   SharedMemory() {}; | ||||||
|  |   ~SharedMemory(); | ||||||
|  |   /////////////////////////////////////////////////////////////////////////////////////// | ||||||
|  |   // set the buffers & sizes | ||||||
|  |   /////////////////////////////////////////////////////////////////////////////////////// | ||||||
|  |   void SetCommunicator(Grid_MPI_Comm comm); | ||||||
|  |  | ||||||
|  |   //////////////////////////////////////////////////////////////////////// | ||||||
|  |   // For this instance ; disjoint buffer sets between splits if split grid | ||||||
|  |   //////////////////////////////////////////////////////////////////////// | ||||||
|  |   void ShmBarrier(void);  | ||||||
|  |  | ||||||
|  |   /////////////////////////////////////////////////// | ||||||
|  |   // Call on any instance | ||||||
|  |   /////////////////////////////////////////////////// | ||||||
|  |   void SharedMemoryTest(void); | ||||||
|  |    | ||||||
|  |   void *ShmBufferSelf(void); | ||||||
|  |   void *ShmBuffer    (int rank); | ||||||
|  |   void *ShmBufferTranslate(int rank,void * local_p); | ||||||
|  |   void *ShmBufferMalloc(size_t bytes); | ||||||
|  |   void  ShmBufferFreeAll(void) ; | ||||||
|  |    | ||||||
|  |   ////////////////////////////////////////////////////////////////////////// | ||||||
|  |   // Make info on Nodes & ranks and Shared memory available | ||||||
|  |   ////////////////////////////////////////////////////////////////////////// | ||||||
|  |   int NodeCount(void) { return GlobalSharedMemory::WorldNodes;}; | ||||||
|  |   int RankCount(void) { return GlobalSharedMemory::WorldSize;}; | ||||||
|  |  | ||||||
|  | }; | ||||||
|  |  | ||||||
|  | NAMESPACE_END(Grid); | ||||||
|  |  | ||||||
							
								
								
									
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								Grid/communicator/SharedMemoryMPI.cc
									
									
									
									
									
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							| @@ -0,0 +1,967 @@ | |||||||
|  | /************************************************************************************* | ||||||
|  |  | ||||||
|  |     Grid physics library, www.github.com/paboyle/Grid  | ||||||
|  |  | ||||||
|  |     Source file: ./lib/communicator/SharedMemory.cc | ||||||
|  |  | ||||||
|  |     Copyright (C) 2015 | ||||||
|  |  | ||||||
|  | Author: Peter Boyle <paboyle@ph.ed.ac.uk> | ||||||
|  | Author: Christoph Lehner <christoph@lhnr.de> | ||||||
|  |  | ||||||
|  |     This program is free software; you can redistribute it and/or modify | ||||||
|  |     it under the terms of the GNU General Public License as published by | ||||||
|  |     the Free Software Foundation; either version 2 of the License, or | ||||||
|  |     (at your option) any later version. | ||||||
|  |  | ||||||
|  |     This program is distributed in the hope that it will be useful, | ||||||
|  |     but WITHOUT ANY WARRANTY; without even the implied warranty of | ||||||
|  |     MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the | ||||||
|  |     GNU General Public License for more details. | ||||||
|  |  | ||||||
|  |     You should have received a copy of the GNU General Public License along | ||||||
|  |     with this program; if not, write to the Free Software Foundation, Inc., | ||||||
|  |     51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. | ||||||
|  |  | ||||||
|  |     See the full license in the file "LICENSE" in the top level distribution directory | ||||||
|  | *************************************************************************************/ | ||||||
|  | /*  END LEGAL */ | ||||||
|  |  | ||||||
|  | #include <Grid/GridCore.h> | ||||||
|  | #include <pwd.h> | ||||||
|  |  | ||||||
|  | #ifdef GRID_CUDA | ||||||
|  | #include <cuda_runtime_api.h> | ||||||
|  | #endif | ||||||
|  | #ifdef GRID_HIP | ||||||
|  | #include <hip/hip_runtime_api.h> | ||||||
|  | #endif | ||||||
|  | #ifdef GRID_SYCl | ||||||
|  |  | ||||||
|  | #endif | ||||||
|  |  | ||||||
|  | NAMESPACE_BEGIN(Grid);  | ||||||
|  | #define header "SharedMemoryMpi: " | ||||||
|  | /*Construct from an MPI communicator*/ | ||||||
|  | void GlobalSharedMemory::Init(Grid_MPI_Comm comm) | ||||||
|  | { | ||||||
|  |   assert(_ShmSetup==0); | ||||||
|  |   WorldComm = comm; | ||||||
|  |   MPI_Comm_rank(WorldComm,&WorldRank); | ||||||
|  |   MPI_Comm_size(WorldComm,&WorldSize); | ||||||
|  |   // WorldComm, WorldSize, WorldRank | ||||||
|  |  | ||||||
|  |   ///////////////////////////////////////////////////////////////////// | ||||||
|  |   // Split into groups that can share memory | ||||||
|  |   ///////////////////////////////////////////////////////////////////// | ||||||
|  | #ifndef GRID_MPI3_SHM_NONE | ||||||
|  |   MPI_Comm_split_type(comm, MPI_COMM_TYPE_SHARED, 0, MPI_INFO_NULL,&WorldShmComm); | ||||||
|  | #else | ||||||
|  |   MPI_Comm_split(comm, WorldRank, 0, &WorldShmComm); | ||||||
|  | #endif | ||||||
|  |  | ||||||
|  |   MPI_Comm_rank(WorldShmComm     ,&WorldShmRank); | ||||||
|  |   MPI_Comm_size(WorldShmComm     ,&WorldShmSize); | ||||||
|  |  | ||||||
|  |   if ( WorldRank == 0) { | ||||||
|  |     std::cout << header " World communicator of size " <<WorldSize << std::endl;   | ||||||
|  |     std::cout << header " Node  communicator of size " <<WorldShmSize << std::endl; | ||||||
|  |   } | ||||||
|  |   // WorldShmComm, WorldShmSize, WorldShmRank | ||||||
|  |  | ||||||
|  |   // WorldNodes | ||||||
|  |   WorldNodes = WorldSize/WorldShmSize; | ||||||
|  |   assert( (WorldNodes * WorldShmSize) == WorldSize ); | ||||||
|  |  | ||||||
|  |  | ||||||
|  |   // FIXME: Check all WorldShmSize are the same ? | ||||||
|  |  | ||||||
|  |   ///////////////////////////////////////////////////////////////////// | ||||||
|  |   // find world ranks in our SHM group (i.e. which ranks are on our node) | ||||||
|  |   ///////////////////////////////////////////////////////////////////// | ||||||
|  |   MPI_Group WorldGroup, ShmGroup; | ||||||
|  |   MPI_Comm_group (WorldComm, &WorldGroup);  | ||||||
|  |   MPI_Comm_group (WorldShmComm, &ShmGroup); | ||||||
|  |  | ||||||
|  |   std::vector<int> world_ranks(WorldSize);   for(int r=0;r<WorldSize;r++) world_ranks[r]=r; | ||||||
|  |  | ||||||
|  |   WorldShmRanks.resize(WorldSize);  | ||||||
|  |   MPI_Group_translate_ranks (WorldGroup,WorldSize,&world_ranks[0],ShmGroup, &WorldShmRanks[0]);  | ||||||
|  |  | ||||||
|  |   /////////////////////////////////////////////////////////////////// | ||||||
|  |   // Identify who is in my group and nominate the leader | ||||||
|  |   /////////////////////////////////////////////////////////////////// | ||||||
|  |   int g=0; | ||||||
|  |   std::vector<int> MyGroup; | ||||||
|  |   MyGroup.resize(WorldShmSize); | ||||||
|  |   for(int rank=0;rank<WorldSize;rank++){ | ||||||
|  |     if(WorldShmRanks[rank]!=MPI_UNDEFINED){ | ||||||
|  |       assert(g<WorldShmSize); | ||||||
|  |       MyGroup[g++] = rank; | ||||||
|  |     } | ||||||
|  |   } | ||||||
|  |    | ||||||
|  |   std::sort(MyGroup.begin(),MyGroup.end(),std::less<int>()); | ||||||
|  |   int myleader = MyGroup[0]; | ||||||
|  |    | ||||||
|  |   std::vector<int> leaders_1hot(WorldSize,0); | ||||||
|  |   std::vector<int> leaders_group(WorldNodes,0); | ||||||
|  |   leaders_1hot [ myleader ] = 1; | ||||||
|  |      | ||||||
|  |   /////////////////////////////////////////////////////////////////// | ||||||
|  |   // global sum leaders over comm world | ||||||
|  |   /////////////////////////////////////////////////////////////////// | ||||||
|  |   int ierr=MPI_Allreduce(MPI_IN_PLACE,&leaders_1hot[0],WorldSize,MPI_INT,MPI_SUM,WorldComm); | ||||||
|  |   assert(ierr==0); | ||||||
|  |  | ||||||
|  |   /////////////////////////////////////////////////////////////////// | ||||||
|  |   // find the group leaders world rank | ||||||
|  |   /////////////////////////////////////////////////////////////////// | ||||||
|  |   int group=0; | ||||||
|  |   for(int l=0;l<WorldSize;l++){ | ||||||
|  |     if(leaders_1hot[l]){ | ||||||
|  |       leaders_group[group++] = l; | ||||||
|  |     } | ||||||
|  |   } | ||||||
|  |  | ||||||
|  |   /////////////////////////////////////////////////////////////////// | ||||||
|  |   // Identify the node of the group in which I (and my leader) live | ||||||
|  |   /////////////////////////////////////////////////////////////////// | ||||||
|  |   WorldNode=-1; | ||||||
|  |   for(int g=0;g<WorldNodes;g++){ | ||||||
|  |     if (myleader == leaders_group[g]){ | ||||||
|  |       WorldNode=g; | ||||||
|  |     } | ||||||
|  |   } | ||||||
|  |   assert(WorldNode!=-1); | ||||||
|  |   _ShmSetup=1; | ||||||
|  | } | ||||||
|  | // Gray encode support  | ||||||
|  | int BinaryToGray (int  binary) { | ||||||
|  |   int gray = (binary>>1)^binary; | ||||||
|  |   return gray; | ||||||
|  | } | ||||||
|  | int Log2Size(int TwoToPower,int MAXLOG2) | ||||||
|  | { | ||||||
|  |   int log2size = -1; | ||||||
|  |   for(int i=0;i<=MAXLOG2;i++){ | ||||||
|  |     if ( (0x1<<i) == TwoToPower ) { | ||||||
|  |       log2size = i; | ||||||
|  |       break; | ||||||
|  |     } | ||||||
|  |   } | ||||||
|  |   return log2size; | ||||||
|  | } | ||||||
|  | void GlobalSharedMemory::OptimalCommunicator(const Coordinate &processors,Grid_MPI_Comm & optimal_comm) | ||||||
|  | { | ||||||
|  |   ////////////////////////////////////////////////////////////////////////////// | ||||||
|  |   // Look and see if it looks like an HPE 8600 based on hostname conventions | ||||||
|  |   ////////////////////////////////////////////////////////////////////////////// | ||||||
|  |   const int namelen = _POSIX_HOST_NAME_MAX; | ||||||
|  |   char name[namelen]; | ||||||
|  |   int R; | ||||||
|  |   int I; | ||||||
|  |   int N; | ||||||
|  |   gethostname(name,namelen); | ||||||
|  |   int nscan = sscanf(name,"r%di%dn%d",&R,&I,&N) ; | ||||||
|  |  | ||||||
|  |   if(nscan==3 && HPEhypercube ) OptimalCommunicatorHypercube(processors,optimal_comm); | ||||||
|  |   else                          OptimalCommunicatorSharedMemory(processors,optimal_comm); | ||||||
|  | } | ||||||
|  | static inline int divides(int a,int b) | ||||||
|  | { | ||||||
|  |   return ( b == ( (b/a)*a ) ); | ||||||
|  | } | ||||||
|  | void GlobalSharedMemory::GetShmDims(const Coordinate &WorldDims,Coordinate &ShmDims) | ||||||
|  | { | ||||||
|  |   //////////////////////////////////////////////////////////////// | ||||||
|  |   // Allow user to configure through environment variable | ||||||
|  |   //////////////////////////////////////////////////////////////// | ||||||
|  |   char* str = getenv(("GRID_SHM_DIMS_" + std::to_string(ShmDims.size())).c_str()); | ||||||
|  |   if ( str ) { | ||||||
|  |     std::vector<int> IntShmDims; | ||||||
|  |     GridCmdOptionIntVector(std::string(str),IntShmDims); | ||||||
|  |     assert(IntShmDims.size() == WorldDims.size()); | ||||||
|  |     long ShmSize = 1; | ||||||
|  |     for (int dim=0;dim<WorldDims.size();dim++) { | ||||||
|  |       ShmSize *= (ShmDims[dim] = IntShmDims[dim]); | ||||||
|  |       assert(divides(ShmDims[dim],WorldDims[dim])); | ||||||
|  |     } | ||||||
|  |     assert(ShmSize == WorldShmSize); | ||||||
|  |     return; | ||||||
|  |   } | ||||||
|  |    | ||||||
|  |   //////////////////////////////////////////////////////////////// | ||||||
|  |   // Powers of 2,3,5 only in prime decomposition for now | ||||||
|  |   //////////////////////////////////////////////////////////////// | ||||||
|  |   int ndimension = WorldDims.size(); | ||||||
|  |   ShmDims=Coordinate(ndimension,1); | ||||||
|  |  | ||||||
|  |   std::vector<int> primes({2,3,5}); | ||||||
|  |  | ||||||
|  |   int dim = 0; | ||||||
|  |   int last_dim = ndimension - 1; | ||||||
|  |   int AutoShmSize = 1; | ||||||
|  |   while(AutoShmSize != WorldShmSize) { | ||||||
|  |     int p; | ||||||
|  |     for(p=0;p<primes.size();p++) { | ||||||
|  |       int prime=primes[p]; | ||||||
|  |       if ( divides(prime,WorldDims[dim]/ShmDims[dim]) | ||||||
|  |         && divides(prime,WorldShmSize/AutoShmSize)  ) { | ||||||
|  | 	AutoShmSize*=prime; | ||||||
|  | 	ShmDims[dim]*=prime; | ||||||
|  | 	last_dim = dim; | ||||||
|  | 	break; | ||||||
|  |       } | ||||||
|  |     } | ||||||
|  |     if (p == primes.size() && last_dim == dim) { | ||||||
|  |       std::cerr << "GlobalSharedMemory::GetShmDims failed" << std::endl; | ||||||
|  |       exit(EXIT_FAILURE); | ||||||
|  |     } | ||||||
|  |     dim=(dim+1) %ndimension; | ||||||
|  |   } | ||||||
|  | } | ||||||
|  | void GlobalSharedMemory::OptimalCommunicatorHypercube(const Coordinate &processors,Grid_MPI_Comm & optimal_comm) | ||||||
|  | { | ||||||
|  |   //////////////////////////////////////////////////////////////// | ||||||
|  |   // Assert power of two shm_size. | ||||||
|  |   //////////////////////////////////////////////////////////////// | ||||||
|  |   int log2size = Log2Size(WorldShmSize,MAXLOG2RANKSPERNODE); | ||||||
|  |   assert(log2size != -1); | ||||||
|  |  | ||||||
|  |   //////////////////////////////////////////////////////////////// | ||||||
|  |   // Identify the hypercube coordinate of this node using hostname | ||||||
|  |   //////////////////////////////////////////////////////////////// | ||||||
|  |   // n runs 0...7 9...16 18...25 27...34     (8*4)  5 bits | ||||||
|  |   // i runs 0..7                                    3 bits | ||||||
|  |   // r runs 0..3                                    2 bits | ||||||
|  |   // 2^10 = 1024 nodes | ||||||
|  |   const int maxhdim = 10;  | ||||||
|  |   std::vector<int> HyperCubeCoords(maxhdim,0); | ||||||
|  |   std::vector<int> RootHyperCubeCoords(maxhdim,0); | ||||||
|  |   int R; | ||||||
|  |   int I; | ||||||
|  |   int N; | ||||||
|  |   const int namelen = _POSIX_HOST_NAME_MAX; | ||||||
|  |   char name[namelen]; | ||||||
|  |  | ||||||
|  |   // Parse ICE-XA hostname to get hypercube location | ||||||
|  |   gethostname(name,namelen); | ||||||
|  |   int nscan = sscanf(name,"r%di%dn%d",&R,&I,&N) ; | ||||||
|  |   assert(nscan==3); | ||||||
|  |  | ||||||
|  |   int nlo = N%9; | ||||||
|  |   int nhi = N/9; | ||||||
|  |   uint32_t hypercoor = (R<<8)|(I<<5)|(nhi<<3)|nlo ; | ||||||
|  |   uint32_t rootcoor  = hypercoor; | ||||||
|  |  | ||||||
|  |   ////////////////////////////////////////////////////////////////// | ||||||
|  |   // Print debug info | ||||||
|  |   ////////////////////////////////////////////////////////////////// | ||||||
|  |   for(int d=0;d<maxhdim;d++){ | ||||||
|  |     HyperCubeCoords[d] = (hypercoor>>d)&0x1; | ||||||
|  |   } | ||||||
|  |  | ||||||
|  |   std::string hname(name); | ||||||
|  |   //  std::cout << "hostname "<<hname<<std::endl; | ||||||
|  |   //  std::cout << "R " << R << " I " << I << " N "<< N | ||||||
|  |   //            << " hypercoor 0x"<<std::hex<<hypercoor<<std::dec<<std::endl; | ||||||
|  |  | ||||||
|  |   ////////////////////////////////////////////////////////////////// | ||||||
|  |   // broadcast node 0's base coordinate for this partition. | ||||||
|  |   ////////////////////////////////////////////////////////////////// | ||||||
|  |   MPI_Bcast(&rootcoor, sizeof(rootcoor), MPI_BYTE, 0, WorldComm);  | ||||||
|  |   hypercoor=hypercoor-rootcoor; | ||||||
|  |   assert(hypercoor<WorldSize); | ||||||
|  |   assert(hypercoor>=0); | ||||||
|  |  | ||||||
|  |   ////////////////////////////////////// | ||||||
|  |   // Printing | ||||||
|  |   ////////////////////////////////////// | ||||||
|  |   for(int d=0;d<maxhdim;d++){ | ||||||
|  |     HyperCubeCoords[d] = (hypercoor>>d)&0x1; | ||||||
|  |   } | ||||||
|  |  | ||||||
|  |   //////////////////////////////////////////////////////////////// | ||||||
|  |   // Identify subblock of ranks on node spreading across dims | ||||||
|  |   // in a maximally symmetrical way | ||||||
|  |   //////////////////////////////////////////////////////////////// | ||||||
|  |   int ndimension              = processors.size(); | ||||||
|  |   Coordinate processor_coor(ndimension); | ||||||
|  |   Coordinate WorldDims = processors; | ||||||
|  |   Coordinate ShmDims  (ndimension);  Coordinate NodeDims (ndimension); | ||||||
|  |   Coordinate ShmCoor  (ndimension);    Coordinate NodeCoor (ndimension);    Coordinate WorldCoor(ndimension); | ||||||
|  |   Coordinate HyperCoor(ndimension); | ||||||
|  |  | ||||||
|  |   GetShmDims(WorldDims,ShmDims); | ||||||
|  |  | ||||||
|  |   //////////////////////////////////////////////////////////////// | ||||||
|  |   // Establish torus of processes and nodes with sub-blockings | ||||||
|  |   //////////////////////////////////////////////////////////////// | ||||||
|  |   for(int d=0;d<ndimension;d++){ | ||||||
|  |     NodeDims[d] = WorldDims[d]/ShmDims[d]; | ||||||
|  |   } | ||||||
|  |   //////////////////////////////////////////////////////////////// | ||||||
|  |   // Map Hcube according to physical lattice  | ||||||
|  |   // must partition. Loop over dims and find out who would join. | ||||||
|  |   //////////////////////////////////////////////////////////////// | ||||||
|  |   int hcoor = hypercoor; | ||||||
|  |   for(int d=0;d<ndimension;d++){ | ||||||
|  |      int bits = Log2Size(NodeDims[d],MAXLOG2RANKSPERNODE); | ||||||
|  |      int msk  = (0x1<<bits)-1; | ||||||
|  |      HyperCoor[d]=hcoor & msk;   | ||||||
|  |      HyperCoor[d]=BinaryToGray(HyperCoor[d]); // Space filling curve magic | ||||||
|  |      hcoor = hcoor >> bits; | ||||||
|  |   } | ||||||
|  |   //////////////////////////////////////////////////////////////// | ||||||
|  |   // Check processor counts match | ||||||
|  |   //////////////////////////////////////////////////////////////// | ||||||
|  |   int Nprocessors=1; | ||||||
|  |   for(int i=0;i<ndimension;i++){ | ||||||
|  |     Nprocessors*=processors[i]; | ||||||
|  |   } | ||||||
|  |   assert(WorldSize==Nprocessors); | ||||||
|  |  | ||||||
|  |   //////////////////////////////////////////////////////////////// | ||||||
|  |   // Establish mapping between lexico physics coord and WorldRank | ||||||
|  |   //////////////////////////////////////////////////////////////// | ||||||
|  |   int rank; | ||||||
|  |  | ||||||
|  |   Lexicographic::CoorFromIndexReversed(NodeCoor,WorldNode   ,NodeDims); | ||||||
|  |  | ||||||
|  |   for(int d=0;d<ndimension;d++) NodeCoor[d]=HyperCoor[d]; | ||||||
|  |  | ||||||
|  |   Lexicographic::CoorFromIndexReversed(ShmCoor ,WorldShmRank,ShmDims); | ||||||
|  |   for(int d=0;d<ndimension;d++) WorldCoor[d] = NodeCoor[d]*ShmDims[d]+ShmCoor[d]; | ||||||
|  |   Lexicographic::IndexFromCoorReversed(WorldCoor,rank,WorldDims); | ||||||
|  |  | ||||||
|  |   ///////////////////////////////////////////////////////////////// | ||||||
|  |   // Build the new communicator | ||||||
|  |   ///////////////////////////////////////////////////////////////// | ||||||
|  |   int ierr= MPI_Comm_split(WorldComm,0,rank,&optimal_comm); | ||||||
|  |   assert(ierr==0); | ||||||
|  | } | ||||||
|  | void GlobalSharedMemory::OptimalCommunicatorSharedMemory(const Coordinate &processors,Grid_MPI_Comm & optimal_comm) | ||||||
|  | { | ||||||
|  |   //////////////////////////////////////////////////////////////// | ||||||
|  |   // Identify subblock of ranks on node spreading across dims | ||||||
|  |   // in a maximally symmetrical way | ||||||
|  |   //////////////////////////////////////////////////////////////// | ||||||
|  |   int ndimension              = processors.size(); | ||||||
|  |   Coordinate processor_coor(ndimension); | ||||||
|  |   Coordinate WorldDims = processors; Coordinate ShmDims(ndimension);  Coordinate NodeDims (ndimension); | ||||||
|  |   Coordinate ShmCoor(ndimension);    Coordinate NodeCoor(ndimension);   Coordinate WorldCoor(ndimension); | ||||||
|  |  | ||||||
|  |   GetShmDims(WorldDims,ShmDims); | ||||||
|  |   //////////////////////////////////////////////////////////////// | ||||||
|  |   // Establish torus of processes and nodes with sub-blockings | ||||||
|  |   //////////////////////////////////////////////////////////////// | ||||||
|  |   for(int d=0;d<ndimension;d++){ | ||||||
|  |     NodeDims[d] = WorldDims[d]/ShmDims[d]; | ||||||
|  |   } | ||||||
|  |  | ||||||
|  |   //////////////////////////////////////////////////////////////// | ||||||
|  |   // Check processor counts match | ||||||
|  |   //////////////////////////////////////////////////////////////// | ||||||
|  |   int Nprocessors=1; | ||||||
|  |   for(int i=0;i<ndimension;i++){ | ||||||
|  |     Nprocessors*=processors[i]; | ||||||
|  |   } | ||||||
|  |   assert(WorldSize==Nprocessors); | ||||||
|  |  | ||||||
|  |   //////////////////////////////////////////////////////////////// | ||||||
|  |   // Establish mapping between lexico physics coord and WorldRank | ||||||
|  |   //////////////////////////////////////////////////////////////// | ||||||
|  |   int rank; | ||||||
|  |  | ||||||
|  |   Lexicographic::CoorFromIndexReversed(NodeCoor,WorldNode   ,NodeDims); | ||||||
|  |   Lexicographic::CoorFromIndexReversed(ShmCoor ,WorldShmRank,ShmDims); | ||||||
|  |   for(int d=0;d<ndimension;d++) WorldCoor[d] = NodeCoor[d]*ShmDims[d]+ShmCoor[d]; | ||||||
|  |   Lexicographic::IndexFromCoorReversed(WorldCoor,rank,WorldDims); | ||||||
|  |  | ||||||
|  |   ///////////////////////////////////////////////////////////////// | ||||||
|  |   // Build the new communicator | ||||||
|  |   ///////////////////////////////////////////////////////////////// | ||||||
|  |   int ierr= MPI_Comm_split(WorldComm,0,rank,&optimal_comm); | ||||||
|  |   assert(ierr==0); | ||||||
|  | } | ||||||
|  | //////////////////////////////////////////////////////////////////////////////////////////// | ||||||
|  | // SHMGET | ||||||
|  | //////////////////////////////////////////////////////////////////////////////////////////// | ||||||
|  | #ifdef GRID_MPI3_SHMGET | ||||||
|  | void GlobalSharedMemory::SharedMemoryAllocate(uint64_t bytes, int flags) | ||||||
|  | { | ||||||
|  |   std::cout << header "SharedMemoryAllocate "<< bytes<< " shmget implementation "<<std::endl; | ||||||
|  |   assert(_ShmSetup==1); | ||||||
|  |   assert(_ShmAlloc==0); | ||||||
|  |  | ||||||
|  |   ////////////////////////////////////////////////////////////////////////////////////////////////////////// | ||||||
|  |   // allocate the shared windows for our group | ||||||
|  |   ////////////////////////////////////////////////////////////////////////////////////////////////////////// | ||||||
|  |   MPI_Barrier(WorldShmComm); | ||||||
|  |   WorldShmCommBufs.resize(WorldShmSize); | ||||||
|  |   std::vector<int> shmids(WorldShmSize); | ||||||
|  |  | ||||||
|  |   if ( WorldShmRank == 0 ) { | ||||||
|  |     for(int r=0;r<WorldShmSize;r++){ | ||||||
|  |       size_t size = bytes; | ||||||
|  |       key_t key   = IPC_PRIVATE; | ||||||
|  |       int flags = IPC_CREAT | SHM_R | SHM_W; | ||||||
|  | #ifdef SHM_HUGETLB | ||||||
|  |       if (Hugepages) flags|=SHM_HUGETLB; | ||||||
|  | #endif | ||||||
|  |       if ((shmids[r]= shmget(key,size, flags)) ==-1) { | ||||||
|  |         int errsv = errno; | ||||||
|  |         printf("Errno %d\n",errsv); | ||||||
|  |         printf("key   %d\n",key); | ||||||
|  |         printf("size  %ld\n",size); | ||||||
|  |         printf("flags %d\n",flags); | ||||||
|  |         perror("shmget"); | ||||||
|  |         exit(1); | ||||||
|  |       } | ||||||
|  |     } | ||||||
|  |   } | ||||||
|  |   MPI_Barrier(WorldShmComm); | ||||||
|  |   MPI_Bcast(&shmids[0],WorldShmSize*sizeof(int),MPI_BYTE,0,WorldShmComm); | ||||||
|  |   MPI_Barrier(WorldShmComm); | ||||||
|  |  | ||||||
|  |   for(int r=0;r<WorldShmSize;r++){ | ||||||
|  |     WorldShmCommBufs[r] = (uint64_t *)shmat(shmids[r], NULL,0); | ||||||
|  |     if (WorldShmCommBufs[r] == (uint64_t *)-1) { | ||||||
|  |       perror("Shared memory attach failure"); | ||||||
|  |       shmctl(shmids[r], IPC_RMID, NULL); | ||||||
|  |       exit(2); | ||||||
|  |     } | ||||||
|  |   } | ||||||
|  |   MPI_Barrier(WorldShmComm); | ||||||
|  |   /////////////////////////////////// | ||||||
|  |   // Mark for clean up | ||||||
|  |   /////////////////////////////////// | ||||||
|  |   for(int r=0;r<WorldShmSize;r++){ | ||||||
|  |     shmctl(shmids[r], IPC_RMID,(struct shmid_ds *)NULL); | ||||||
|  |   } | ||||||
|  |   MPI_Barrier(WorldShmComm); | ||||||
|  |  | ||||||
|  |   _ShmAlloc=1; | ||||||
|  |   _ShmAllocBytes  = bytes; | ||||||
|  | } | ||||||
|  | #endif | ||||||
|  |  | ||||||
|  | //////////////////////////////////////////////////////////////////////////////////////////// | ||||||
|  | // Hugetlbfs mapping intended | ||||||
|  | //////////////////////////////////////////////////////////////////////////////////////////// | ||||||
|  | #if defined(GRID_CUDA) ||defined(GRID_HIP)  || defined(GRID_SYCL) | ||||||
|  |  | ||||||
|  | //if defined(GRID_SYCL) | ||||||
|  | #if 0 | ||||||
|  | void GlobalSharedMemory::SharedMemoryAllocate(uint64_t bytes, int flags) | ||||||
|  | { | ||||||
|  |   void * ShmCommBuf ;  | ||||||
|  |   assert(_ShmSetup==1); | ||||||
|  |   assert(_ShmAlloc==0); | ||||||
|  |  | ||||||
|  |   ////////////////////////////////////////////////////////////////////////////////////////////////////////// | ||||||
|  |   // allocate the pointer array for shared windows for our group | ||||||
|  |   ////////////////////////////////////////////////////////////////////////////////////////////////////////// | ||||||
|  |   MPI_Barrier(WorldShmComm); | ||||||
|  |   WorldShmCommBufs.resize(WorldShmSize); | ||||||
|  |  | ||||||
|  |   /////////////////////////////////////////////////////////////////////////////////////////////////////////// | ||||||
|  |   // Each MPI rank should allocate our own buffer | ||||||
|  |   /////////////////////////////////////////////////////////////////////////////////////////////////////////// | ||||||
|  |   ShmCommBuf = acceleratorAllocDevice(bytes); | ||||||
|  |  | ||||||
|  |   if (ShmCommBuf == (void *)NULL ) { | ||||||
|  |     std::cerr << " SharedMemoryMPI.cc acceleratorAllocDevice failed NULL pointer for " << bytes<<" bytes " << std::endl; | ||||||
|  |     exit(EXIT_FAILURE);   | ||||||
|  |   } | ||||||
|  |  | ||||||
|  |   std::cout << WorldRank << header " SharedMemoryMPI.cc acceleratorAllocDevice "<< bytes  | ||||||
|  | 	    << "bytes at "<< std::hex<< ShmCommBuf <<std::dec<<" for comms buffers " <<std::endl; | ||||||
|  |  | ||||||
|  |   SharedMemoryZero(ShmCommBuf,bytes); | ||||||
|  |  | ||||||
|  |   assert(WorldShmSize == 1); | ||||||
|  |   for(int r=0;r<WorldShmSize;r++){ | ||||||
|  |     WorldShmCommBufs[r] = ShmCommBuf; | ||||||
|  |   } | ||||||
|  |   _ShmAllocBytes=bytes; | ||||||
|  |   _ShmAlloc=1; | ||||||
|  | } | ||||||
|  | #endif | ||||||
|  |  | ||||||
|  | #if defined(GRID_CUDA) ||defined(GRID_HIP) ||defined(GRID_SYCL)   | ||||||
|  | void GlobalSharedMemory::SharedMemoryAllocate(uint64_t bytes, int flags) | ||||||
|  | { | ||||||
|  |   void * ShmCommBuf ;  | ||||||
|  |   assert(_ShmSetup==1); | ||||||
|  |   assert(_ShmAlloc==0); | ||||||
|  |  | ||||||
|  |   ////////////////////////////////////////////////////////////////////////////////////////////////////////// | ||||||
|  |   // allocate the pointer array for shared windows for our group | ||||||
|  |   ////////////////////////////////////////////////////////////////////////////////////////////////////////// | ||||||
|  |   MPI_Barrier(WorldShmComm); | ||||||
|  |   WorldShmCommBufs.resize(WorldShmSize); | ||||||
|  |  | ||||||
|  |   ////////////////////////////////////////////////////////////////////////////////////////////////////////// | ||||||
|  |   // TODO/FIXME : NOT ALL NVLINK BOARDS have full Peer to peer connectivity. | ||||||
|  |   // The annoyance is that they have partial peer 2 peer. This occurs on the 8 GPU blades. | ||||||
|  |   // e.g. DGX1, supermicro board,  | ||||||
|  |   ////////////////////////////////////////////////////////////////////////////////////////////////////////// | ||||||
|  |   //  cudaDeviceGetP2PAttribute(&perfRank, cudaDevP2PAttrPerformanceRank, device1, device2); | ||||||
|  |  | ||||||
|  |   /////////////////////////////////////////////////////////////////////////////////////////////////////////// | ||||||
|  |   // Each MPI rank should allocate our own buffer | ||||||
|  |   /////////////////////////////////////////////////////////////////////////////////////////////////////////// | ||||||
|  |   ShmCommBuf = acceleratorAllocDevice(bytes); | ||||||
|  |   if (ShmCommBuf == (void *)NULL ) { | ||||||
|  |     std::cerr << " SharedMemoryMPI.cc acceleratorAllocDevice failed NULL pointer for " << bytes<<" bytes " << std::endl; | ||||||
|  |     exit(EXIT_FAILURE);   | ||||||
|  |   } | ||||||
|  |   if ( WorldRank == 0 ){ | ||||||
|  |     std::cout << WorldRank << header " SharedMemoryMPI.cc acceleratorAllocDevice "<< bytes  | ||||||
|  | 	      << "bytes at "<< std::hex<< ShmCommBuf <<std::dec<<" for comms buffers " <<std::endl; | ||||||
|  |   } | ||||||
|  |   SharedMemoryZero(ShmCommBuf,bytes); | ||||||
|  |   std::cout<< "Setting up IPC"<<std::endl; | ||||||
|  |   /////////////////////////////////////////////////////////////////////////////////////////////////////////// | ||||||
|  |   // Loop over ranks/gpu's on our node | ||||||
|  |   /////////////////////////////////////////////////////////////////////////////////////////////////////////// | ||||||
|  |   for(int r=0;r<WorldShmSize;r++){ | ||||||
|  |  | ||||||
|  | #ifndef GRID_MPI3_SHM_NONE | ||||||
|  |     ////////////////////////////////////////////////// | ||||||
|  |     // If it is me, pass around the IPC access key | ||||||
|  |     ////////////////////////////////////////////////// | ||||||
|  |     void * thisBuf = ShmCommBuf; | ||||||
|  |     if(!Stencil_force_mpi) { | ||||||
|  | #ifdef GRID_SYCL_LEVEL_ZERO_IPC | ||||||
|  |     typedef struct { int fd; pid_t pid ; } clone_mem_t; | ||||||
|  |  | ||||||
|  |     auto zeDevice    = cl::sycl::get_native<cl::sycl::backend::level_zero>(theGridAccelerator->get_device()); | ||||||
|  |     auto zeContext   = cl::sycl::get_native<cl::sycl::backend::level_zero>(theGridAccelerator->get_context()); | ||||||
|  |        | ||||||
|  |     ze_ipc_mem_handle_t ihandle; | ||||||
|  |     clone_mem_t handle; | ||||||
|  |  | ||||||
|  |     if ( r==WorldShmRank ) {  | ||||||
|  |       auto err = zeMemGetIpcHandle(zeContext,ShmCommBuf,&ihandle); | ||||||
|  |       if ( err != ZE_RESULT_SUCCESS ) { | ||||||
|  | 	std::cout << "SharedMemoryMPI.cc zeMemGetIpcHandle failed for rank "<<r<<" "<<std::hex<<err<<std::dec<<std::endl; | ||||||
|  | 	exit(EXIT_FAILURE); | ||||||
|  |       } else { | ||||||
|  | 	std::cout << "SharedMemoryMPI.cc zeMemGetIpcHandle succeeded for rank "<<r<<" "<<std::hex<<err<<std::dec<<std::endl; | ||||||
|  |       } | ||||||
|  |       memcpy((void *)&handle.fd,(void *)&ihandle,sizeof(int)); | ||||||
|  |       handle.pid = getpid(); | ||||||
|  |     } | ||||||
|  | #endif | ||||||
|  | #ifdef GRID_CUDA | ||||||
|  |     cudaIpcMemHandle_t handle; | ||||||
|  |     if ( r==WorldShmRank ) {  | ||||||
|  |       auto err = cudaIpcGetMemHandle(&handle,ShmCommBuf); | ||||||
|  |       if ( err !=  cudaSuccess) { | ||||||
|  | 	std::cerr << " SharedMemoryMPI.cc cudaIpcGetMemHandle failed for rank" << r <<" "<<cudaGetErrorString(err)<< std::endl; | ||||||
|  | 	exit(EXIT_FAILURE); | ||||||
|  |       } | ||||||
|  |     } | ||||||
|  | #endif | ||||||
|  | #ifdef GRID_HIP | ||||||
|  |     hipIpcMemHandle_t handle;     | ||||||
|  |     if ( r==WorldShmRank ) {  | ||||||
|  |       auto err = hipIpcGetMemHandle(&handle,ShmCommBuf); | ||||||
|  |       if ( err !=  hipSuccess) { | ||||||
|  | 	std::cerr << " SharedMemoryMPI.cc hipIpcGetMemHandle failed for rank" << r <<" "<<hipGetErrorString(err)<< std::endl; | ||||||
|  | 	exit(EXIT_FAILURE); | ||||||
|  |       } | ||||||
|  |     } | ||||||
|  | #endif | ||||||
|  |  | ||||||
|  |     ////////////////////////////////////////////////// | ||||||
|  |     // Share this IPC handle across the Shm Comm | ||||||
|  |     ////////////////////////////////////////////////// | ||||||
|  |     {  | ||||||
|  |       int ierr=MPI_Bcast(&handle, | ||||||
|  | 			 sizeof(handle), | ||||||
|  | 			 MPI_BYTE, | ||||||
|  | 			 r, | ||||||
|  | 			 WorldShmComm); | ||||||
|  |       assert(ierr==0); | ||||||
|  |     } | ||||||
|  |      | ||||||
|  |     /////////////////////////////////////////////////////////////// | ||||||
|  |     // If I am not the source, overwrite thisBuf with remote buffer | ||||||
|  |     /////////////////////////////////////////////////////////////// | ||||||
|  |  | ||||||
|  | #ifdef GRID_SYCL_LEVEL_ZERO_IPC | ||||||
|  |     if ( r!=WorldShmRank ) { | ||||||
|  |       thisBuf = nullptr; | ||||||
|  |       std::cout<<"mapping seeking remote pid/fd " | ||||||
|  | 	       <<handle.pid<<"/" | ||||||
|  | 	       <<handle.fd<<std::endl; | ||||||
|  |  | ||||||
|  |       int pidfd = syscall(SYS_pidfd_open,handle.pid,0); | ||||||
|  |       std::cout<<"Using IpcHandle pidfd "<<pidfd<<"\n"; | ||||||
|  |       //      int myfd  = syscall(SYS_pidfd_getfd,pidfd,handle.fd,0); | ||||||
|  |       int myfd  = syscall(438,pidfd,handle.fd,0); | ||||||
|  |  | ||||||
|  |       std::cout<<"Using IpcHandle myfd "<<myfd<<"\n"; | ||||||
|  |        | ||||||
|  |       memcpy((void *)&ihandle,(void *)&myfd,sizeof(int)); | ||||||
|  |  | ||||||
|  |       auto err = zeMemOpenIpcHandle(zeContext,zeDevice,ihandle,0,&thisBuf); | ||||||
|  |       if ( err != ZE_RESULT_SUCCESS ) { | ||||||
|  | 	std::cout << "SharedMemoryMPI.cc "<<zeContext<<" "<<zeDevice<<std::endl; | ||||||
|  | 	std::cout << "SharedMemoryMPI.cc zeMemOpenIpcHandle failed for rank "<<r<<" "<<std::hex<<err<<std::dec<<std::endl;  | ||||||
|  | 	exit(EXIT_FAILURE); | ||||||
|  |       } else { | ||||||
|  | 	std::cout << "SharedMemoryMPI.cc zeMemOpenIpcHandle succeeded for rank "<<r<<std::endl; | ||||||
|  | 	std::cout << "SharedMemoryMPI.cc zeMemOpenIpcHandle pointer is "<<std::hex<<thisBuf<<std::dec<<std::endl; | ||||||
|  |       } | ||||||
|  |       assert(thisBuf!=nullptr); | ||||||
|  |     } | ||||||
|  | #endif | ||||||
|  | #ifdef GRID_CUDA | ||||||
|  |     if ( r!=WorldShmRank ) {  | ||||||
|  |       auto err = cudaIpcOpenMemHandle(&thisBuf,handle,cudaIpcMemLazyEnablePeerAccess); | ||||||
|  |       if ( err !=  cudaSuccess) { | ||||||
|  | 	std::cerr << " SharedMemoryMPI.cc cudaIpcOpenMemHandle failed for rank" << r <<" "<<cudaGetErrorString(err)<< std::endl; | ||||||
|  | 	exit(EXIT_FAILURE); | ||||||
|  |       } | ||||||
|  |     } | ||||||
|  | #endif | ||||||
|  | #ifdef GRID_HIP | ||||||
|  |     if ( r!=WorldShmRank ) {  | ||||||
|  |       auto err = hipIpcOpenMemHandle(&thisBuf,handle,hipIpcMemLazyEnablePeerAccess); | ||||||
|  |       if ( err !=  hipSuccess) { | ||||||
|  | 	std::cerr << " SharedMemoryMPI.cc hipIpcOpenMemHandle failed for rank" << r <<" "<<hipGetErrorString(err)<< std::endl; | ||||||
|  | 	exit(EXIT_FAILURE); | ||||||
|  |       } | ||||||
|  |     } | ||||||
|  | #endif | ||||||
|  |     /////////////////////////////////////////////////////////////// | ||||||
|  |     // Save a copy of the device buffers | ||||||
|  |     /////////////////////////////////////////////////////////////// | ||||||
|  |     } | ||||||
|  |     WorldShmCommBufs[r] = thisBuf; | ||||||
|  | #else | ||||||
|  |     WorldShmCommBufs[r] = ShmCommBuf; | ||||||
|  | #endif | ||||||
|  |   } | ||||||
|  |  | ||||||
|  |   _ShmAllocBytes=bytes; | ||||||
|  |   _ShmAlloc=1; | ||||||
|  | } | ||||||
|  | #endif | ||||||
|  |  | ||||||
|  | #else  | ||||||
|  | #ifdef GRID_MPI3_SHMMMAP | ||||||
|  | void GlobalSharedMemory::SharedMemoryAllocate(uint64_t bytes, int flags) | ||||||
|  | { | ||||||
|  |   std::cout << header "SharedMemoryAllocate "<< bytes<< " MMAP implementation "<< GRID_SHM_PATH <<std::endl; | ||||||
|  |   assert(_ShmSetup==1); | ||||||
|  |   assert(_ShmAlloc==0); | ||||||
|  |   ////////////////////////////////////////////////////////////////////////////////////////////////////////// | ||||||
|  |   // allocate the shared windows for our group | ||||||
|  |   ////////////////////////////////////////////////////////////////////////////////////////////////////////// | ||||||
|  |   MPI_Barrier(WorldShmComm); | ||||||
|  |   WorldShmCommBufs.resize(WorldShmSize); | ||||||
|  |    | ||||||
|  |   //////////////////////////////////////////////////////////////////////////////////////////// | ||||||
|  |   // Hugetlbfs and others map filesystems as mappable huge pages | ||||||
|  |   //////////////////////////////////////////////////////////////////////////////////////////// | ||||||
|  |   char shm_name [NAME_MAX]; | ||||||
|  |   for(int r=0;r<WorldShmSize;r++){ | ||||||
|  |      | ||||||
|  |     sprintf(shm_name,GRID_SHM_PATH "/Grid_mpi3_shm_%d_%d",WorldNode,r); | ||||||
|  |     int fd=open(shm_name,O_RDWR|O_CREAT,0666); | ||||||
|  |     if ( fd == -1) {  | ||||||
|  |       printf("open %s failed\n",shm_name); | ||||||
|  |       perror("open hugetlbfs"); | ||||||
|  |       exit(0); | ||||||
|  |     } | ||||||
|  |     int mmap_flag = MAP_SHARED ; | ||||||
|  | #ifdef MAP_POPULATE     | ||||||
|  |     mmap_flag|=MAP_POPULATE; | ||||||
|  | #endif | ||||||
|  | #ifdef MAP_HUGETLB | ||||||
|  |     if ( flags ) mmap_flag |= MAP_HUGETLB; | ||||||
|  | #endif | ||||||
|  |     void *ptr = (void *) mmap(NULL, bytes, PROT_READ | PROT_WRITE, mmap_flag,fd, 0);  | ||||||
|  |     if ( ptr == (void *)MAP_FAILED ) {     | ||||||
|  |       printf("mmap %s failed\n",shm_name); | ||||||
|  |       perror("failed mmap");      assert(0);     | ||||||
|  |     } | ||||||
|  |     assert(((uint64_t)ptr&0x3F)==0); | ||||||
|  |     close(fd); | ||||||
|  |     WorldShmCommBufs[r] =ptr; | ||||||
|  |     //    std::cout << header "Set WorldShmCommBufs["<<r<<"]="<<ptr<< "("<< bytes<< "bytes)"<<std::endl; | ||||||
|  |   } | ||||||
|  |   _ShmAlloc=1; | ||||||
|  |   _ShmAllocBytes  = bytes; | ||||||
|  | }; | ||||||
|  | #endif // MMAP | ||||||
|  |  | ||||||
|  | #ifdef GRID_MPI3_SHM_NONE | ||||||
|  | void GlobalSharedMemory::SharedMemoryAllocate(uint64_t bytes, int flags) | ||||||
|  | { | ||||||
|  |   std::cout << header "SharedMemoryAllocate "<< bytes<< " MMAP anonymous implementation "<<std::endl; | ||||||
|  |   assert(_ShmSetup==1); | ||||||
|  |   assert(_ShmAlloc==0); | ||||||
|  |   ////////////////////////////////////////////////////////////////////////////////////////////////////////// | ||||||
|  |   // allocate the shared windows for our group | ||||||
|  |   ////////////////////////////////////////////////////////////////////////////////////////////////////////// | ||||||
|  |   MPI_Barrier(WorldShmComm); | ||||||
|  |   WorldShmCommBufs.resize(WorldShmSize); | ||||||
|  |    | ||||||
|  |   //////////////////////////////////////////////////////////////////////////////////////////// | ||||||
|  |   // Hugetlbf and others map filesystems as mappable huge pages | ||||||
|  |   //////////////////////////////////////////////////////////////////////////////////////////// | ||||||
|  |   char shm_name [NAME_MAX]; | ||||||
|  |   assert(WorldShmSize == 1); | ||||||
|  |   for(int r=0;r<WorldShmSize;r++){ | ||||||
|  |      | ||||||
|  |     int fd=-1; | ||||||
|  |     int mmap_flag = MAP_SHARED |MAP_ANONYMOUS ; | ||||||
|  | #ifdef MAP_POPULATE     | ||||||
|  |     mmap_flag|=MAP_POPULATE; | ||||||
|  | #endif | ||||||
|  | #ifdef MAP_HUGETLB | ||||||
|  |     if ( flags ) mmap_flag |= MAP_HUGETLB; | ||||||
|  | #endif | ||||||
|  |     void *ptr = (void *) mmap(NULL, bytes, PROT_READ | PROT_WRITE, mmap_flag,fd, 0);  | ||||||
|  |     if ( ptr == (void *)MAP_FAILED ) {     | ||||||
|  |       printf("mmap %s failed\n",shm_name); | ||||||
|  |       perror("failed mmap");      assert(0);     | ||||||
|  |     } | ||||||
|  |     assert(((uint64_t)ptr&0x3F)==0); | ||||||
|  |     close(fd); | ||||||
|  |     WorldShmCommBufs[r] =ptr; | ||||||
|  |     //    std::cout << "Set WorldShmCommBufs["<<r<<"]="<<ptr<< "("<< bytes<< "bytes)"<<std::endl; | ||||||
|  |   } | ||||||
|  |   _ShmAlloc=1; | ||||||
|  |   _ShmAllocBytes  = bytes; | ||||||
|  | }; | ||||||
|  | #endif // MMAP | ||||||
|  |  | ||||||
|  | #ifdef GRID_MPI3_SHMOPEN | ||||||
|  | //////////////////////////////////////////////////////////////////////////////////////////// | ||||||
|  | // POSIX SHMOPEN ; as far as I know Linux does not allow EXPLICIT HugePages with this case | ||||||
|  | // tmpfs (Larry Meadows says) does not support explicit huge page, and this is used for  | ||||||
|  | // the posix shm virtual file system | ||||||
|  | //////////////////////////////////////////////////////////////////////////////////////////// | ||||||
|  | void GlobalSharedMemory::SharedMemoryAllocate(uint64_t bytes, int flags) | ||||||
|  | {  | ||||||
|  |   std::cout << header "SharedMemoryAllocate "<< bytes<< " SHMOPEN implementation "<<std::endl; | ||||||
|  |   assert(_ShmSetup==1); | ||||||
|  |   assert(_ShmAlloc==0);  | ||||||
|  |   MPI_Barrier(WorldShmComm); | ||||||
|  |   WorldShmCommBufs.resize(WorldShmSize); | ||||||
|  |  | ||||||
|  |   char shm_name [NAME_MAX]; | ||||||
|  |   if ( WorldShmRank == 0 ) { | ||||||
|  |     for(int r=0;r<WorldShmSize;r++){ | ||||||
|  | 	 | ||||||
|  |       size_t size = bytes; | ||||||
|  |        | ||||||
|  |       struct passwd *pw = getpwuid (getuid()); | ||||||
|  |       sprintf(shm_name,"/Grid_%s_mpi3_shm_%d_%d",pw->pw_name,WorldNode,r); | ||||||
|  |        | ||||||
|  |       shm_unlink(shm_name); | ||||||
|  |       int fd=shm_open(shm_name,O_RDWR|O_CREAT,0666); | ||||||
|  |       if ( fd < 0 ) {	perror("failed shm_open");	assert(0);      } | ||||||
|  |       ftruncate(fd, size); | ||||||
|  | 	 | ||||||
|  |       int mmap_flag = MAP_SHARED; | ||||||
|  | #ifdef MAP_POPULATE  | ||||||
|  |       mmap_flag |= MAP_POPULATE; | ||||||
|  | #endif | ||||||
|  | #ifdef MAP_HUGETLB | ||||||
|  |       if (flags) mmap_flag |= MAP_HUGETLB; | ||||||
|  | #endif | ||||||
|  |       void * ptr =  mmap(NULL,size, PROT_READ | PROT_WRITE, mmap_flag, fd, 0); | ||||||
|  |        | ||||||
|  |       if ( ptr == (void * )MAP_FAILED ) {        | ||||||
|  | 	perror("failed mmap");      | ||||||
|  | 	assert(0);     | ||||||
|  |       } | ||||||
|  |       assert(((uint64_t)ptr&0x3F)==0); | ||||||
|  |        | ||||||
|  |       WorldShmCommBufs[r] =ptr; | ||||||
|  |       close(fd); | ||||||
|  |     } | ||||||
|  |   } | ||||||
|  |  | ||||||
|  |   MPI_Barrier(WorldShmComm); | ||||||
|  |    | ||||||
|  |   if ( WorldShmRank != 0 ) {  | ||||||
|  |     for(int r=0;r<WorldShmSize;r++){ | ||||||
|  |  | ||||||
|  |       size_t size = bytes ; | ||||||
|  |        | ||||||
|  |       struct passwd *pw = getpwuid (getuid()); | ||||||
|  |       sprintf(shm_name,"/Grid_%s_mpi3_shm_%d_%d",pw->pw_name,WorldNode,r); | ||||||
|  |        | ||||||
|  |       int fd=shm_open(shm_name,O_RDWR,0666); | ||||||
|  |       if ( fd<0 ) {	perror("failed shm_open");	assert(0);      } | ||||||
|  |        | ||||||
|  |       void * ptr =  mmap(NULL,size, PROT_READ | PROT_WRITE, MAP_SHARED, fd, 0); | ||||||
|  |       if ( ptr == MAP_FAILED ) {       perror("failed mmap");      assert(0);    } | ||||||
|  |       assert(((uint64_t)ptr&0x3F)==0); | ||||||
|  |       WorldShmCommBufs[r] =ptr; | ||||||
|  |  | ||||||
|  |       close(fd); | ||||||
|  |     } | ||||||
|  |   } | ||||||
|  |   _ShmAlloc=1; | ||||||
|  |   _ShmAllocBytes = bytes; | ||||||
|  | } | ||||||
|  | #endif | ||||||
|  | #endif // End NVCC case for GPU device buffers | ||||||
|  |  | ||||||
|  | ///////////////////////////////////////////////////////////////////////// | ||||||
|  | // Routines accessing shared memory should route through for GPU safety | ||||||
|  | ///////////////////////////////////////////////////////////////////////// | ||||||
|  | void GlobalSharedMemory::SharedMemoryZero(void *dest,size_t bytes) | ||||||
|  | { | ||||||
|  | #if defined(GRID_CUDA) || defined(GRID_HIP) || defined(GRID_SYCL) | ||||||
|  |   acceleratorMemSet(dest,0,bytes); | ||||||
|  | #else | ||||||
|  |   bzero(dest,bytes); | ||||||
|  | #endif | ||||||
|  | } | ||||||
|  | void GlobalSharedMemory::SharedMemoryCopy(void *dest,void *src,size_t bytes) | ||||||
|  | { | ||||||
|  | #if defined(GRID_CUDA) || defined(GRID_HIP) || defined(GRID_SYCL) | ||||||
|  |   acceleratorCopyToDevice(src,dest,bytes); | ||||||
|  | #else    | ||||||
|  |   bcopy(src,dest,bytes); | ||||||
|  | #endif | ||||||
|  | } | ||||||
|  | //////////////////////////////////////////////////////// | ||||||
|  | // Global shared functionality finished | ||||||
|  | // Now move to per communicator functionality | ||||||
|  | //////////////////////////////////////////////////////// | ||||||
|  | void SharedMemory::SetCommunicator(Grid_MPI_Comm comm) | ||||||
|  | { | ||||||
|  |   int rank, size; | ||||||
|  |   MPI_Comm_rank(comm,&rank); | ||||||
|  |   MPI_Comm_size(comm,&size); | ||||||
|  |   ShmRanks.resize(size); | ||||||
|  |  | ||||||
|  |   ///////////////////////////////////////////////////////////////////// | ||||||
|  |   // Split into groups that can share memory | ||||||
|  |   ///////////////////////////////////////////////////////////////////// | ||||||
|  | #ifndef GRID_MPI3_SHM_NONE | ||||||
|  |   MPI_Comm_split_type(comm, MPI_COMM_TYPE_SHARED, 0, MPI_INFO_NULL,&ShmComm); | ||||||
|  | #else | ||||||
|  |   MPI_Comm_split(comm, rank, 0, &ShmComm); | ||||||
|  | #endif | ||||||
|  |   MPI_Comm_rank(ShmComm     ,&ShmRank); | ||||||
|  |   MPI_Comm_size(ShmComm     ,&ShmSize); | ||||||
|  |   ShmCommBufs.resize(ShmSize); | ||||||
|  |  | ||||||
|  |   ////////////////////////////////////////////////////////////////////// | ||||||
|  |   // Map ShmRank to WorldShmRank and use the right buffer | ||||||
|  |   ////////////////////////////////////////////////////////////////////// | ||||||
|  |   assert (GlobalSharedMemory::ShmAlloc()==1); | ||||||
|  |   heap_size = GlobalSharedMemory::ShmAllocBytes(); | ||||||
|  |   for(int r=0;r<ShmSize;r++){ | ||||||
|  |  | ||||||
|  |     uint32_t wsr = (r==ShmRank) ? GlobalSharedMemory::WorldShmRank : 0 ; | ||||||
|  |  | ||||||
|  |     MPI_Allreduce(MPI_IN_PLACE,&wsr,1,MPI_UINT32_T,MPI_SUM,ShmComm); | ||||||
|  |  | ||||||
|  |     ShmCommBufs[r] = GlobalSharedMemory::WorldShmCommBufs[wsr]; | ||||||
|  |   } | ||||||
|  |   ShmBufferFreeAll(); | ||||||
|  |  | ||||||
|  |   ///////////////////////////////////////////////////////////////////// | ||||||
|  |   // find comm ranks in our SHM group (i.e. which ranks are on our node) | ||||||
|  |   ///////////////////////////////////////////////////////////////////// | ||||||
|  |   MPI_Group FullGroup, ShmGroup; | ||||||
|  |   MPI_Comm_group (comm   , &FullGroup);  | ||||||
|  |   MPI_Comm_group (ShmComm, &ShmGroup); | ||||||
|  |  | ||||||
|  |   std::vector<int> ranks(size);   for(int r=0;r<size;r++) ranks[r]=r; | ||||||
|  |   MPI_Group_translate_ranks (FullGroup,size,&ranks[0],ShmGroup, &ShmRanks[0]);  | ||||||
|  |  | ||||||
|  | #ifdef GRID_SHM_FORCE_MPI | ||||||
|  |   // Hide the shared memory path between ranks | ||||||
|  |   { | ||||||
|  |     for(int r=0;r<size;r++){ | ||||||
|  |       if ( r!=rank ) { | ||||||
|  | 	ShmRanks[r] = MPI_UNDEFINED; | ||||||
|  |       } | ||||||
|  |     } | ||||||
|  |   } | ||||||
|  | #endif | ||||||
|  |  | ||||||
|  |   //SharedMemoryTest(); | ||||||
|  | } | ||||||
|  | ////////////////////////////////////////////////////////////////// | ||||||
|  | // On node barrier | ||||||
|  | ////////////////////////////////////////////////////////////////// | ||||||
|  | void SharedMemory::ShmBarrier(void) | ||||||
|  | { | ||||||
|  |   MPI_Barrier  (ShmComm); | ||||||
|  | } | ||||||
|  | ////////////////////////////////////////////////////////////////////////////////////////////////////////// | ||||||
|  | // Test the shared memory is working | ||||||
|  | ////////////////////////////////////////////////////////////////////////////////////////////////////////// | ||||||
|  | void SharedMemory::SharedMemoryTest(void) | ||||||
|  | { | ||||||
|  |   ShmBarrier(); | ||||||
|  |   uint64_t check[3]; | ||||||
|  |   uint64_t magic = 0x5A5A5A; | ||||||
|  |   if ( ShmRank == 0 ) { | ||||||
|  |     for(uint64_t r=0;r<ShmSize;r++){ | ||||||
|  |        check[0]=GlobalSharedMemory::WorldNode; | ||||||
|  |        check[1]=r; | ||||||
|  |        check[2]=magic; | ||||||
|  |        GlobalSharedMemory::SharedMemoryCopy( ShmCommBufs[r], check, 3*sizeof(uint64_t)); | ||||||
|  |     } | ||||||
|  |   } | ||||||
|  |   ShmBarrier(); | ||||||
|  |   for(uint64_t r=0;r<ShmSize;r++){ | ||||||
|  |     ShmBarrier(); | ||||||
|  |     GlobalSharedMemory::SharedMemoryCopy(check,ShmCommBufs[r], 3*sizeof(uint64_t)); | ||||||
|  |     ShmBarrier(); | ||||||
|  |     assert(check[0]==GlobalSharedMemory::WorldNode); | ||||||
|  |     assert(check[1]==r); | ||||||
|  |     assert(check[2]==magic); | ||||||
|  |     ShmBarrier(); | ||||||
|  |   } | ||||||
|  | } | ||||||
|  |  | ||||||
|  | void *SharedMemory::ShmBuffer(int rank) | ||||||
|  | { | ||||||
|  |   int gpeer = ShmRanks[rank]; | ||||||
|  |   if (gpeer == MPI_UNDEFINED){ | ||||||
|  |     return NULL; | ||||||
|  |   } else {  | ||||||
|  |     return ShmCommBufs[gpeer]; | ||||||
|  |   } | ||||||
|  | } | ||||||
|  | void *SharedMemory::ShmBufferTranslate(int rank,void * local_p) | ||||||
|  | { | ||||||
|  |   int gpeer = ShmRanks[rank]; | ||||||
|  |   assert(gpeer!=ShmRank); // never send to self | ||||||
|  |   if (gpeer == MPI_UNDEFINED){ | ||||||
|  |     return NULL; | ||||||
|  |   } else {  | ||||||
|  |     uint64_t offset = (uint64_t)local_p - (uint64_t)ShmCommBufs[ShmRank]; | ||||||
|  |     uint64_t remote = (uint64_t)ShmCommBufs[gpeer]+offset; | ||||||
|  |     return (void *) remote; | ||||||
|  |   } | ||||||
|  | } | ||||||
|  | SharedMemory::~SharedMemory() | ||||||
|  | { | ||||||
|  |   int MPI_is_finalised;  MPI_Finalized(&MPI_is_finalised); | ||||||
|  |   if ( !MPI_is_finalised ) {  | ||||||
|  |     MPI_Comm_free(&ShmComm); | ||||||
|  |   } | ||||||
|  | }; | ||||||
|  |  | ||||||
|  | NAMESPACE_END(Grid);  | ||||||
|  |  | ||||||
							
								
								
									
										170
									
								
								Grid/communicator/SharedMemoryNone.cc
									
									
									
									
									
										Normal file
									
								
							
							
						
						
									
										170
									
								
								Grid/communicator/SharedMemoryNone.cc
									
									
									
									
									
										Normal file
									
								
							| @@ -0,0 +1,170 @@ | |||||||
|  | /************************************************************************************* | ||||||
|  |  | ||||||
|  |     Grid physics library, www.github.com/paboyle/Grid  | ||||||
|  |  | ||||||
|  |     Source file: ./lib/communicator/SharedMemory.cc | ||||||
|  |  | ||||||
|  |     Copyright (C) 2015 | ||||||
|  |  | ||||||
|  | Author: Peter Boyle <paboyle@ph.ed.ac.uk> | ||||||
|  |  | ||||||
|  |     This program is free software; you can redistribute it and/or modify | ||||||
|  |     it under the terms of the GNU General Public License as published by | ||||||
|  |     the Free Software Foundation; either version 2 of the License, or | ||||||
|  |     (at your option) any later version. | ||||||
|  |  | ||||||
|  |     This program is distributed in the hope that it will be useful, | ||||||
|  |     but WITHOUT ANY WARRANTY; without even the implied warranty of | ||||||
|  |     MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the | ||||||
|  |     GNU General Public License for more details. | ||||||
|  |  | ||||||
|  |     You should have received a copy of the GNU General Public License along | ||||||
|  |     with this program; if not, write to the Free Software Foundation, Inc., | ||||||
|  |     51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. | ||||||
|  |  | ||||||
|  |     See the full license in the file "LICENSE" in the top level distribution directory | ||||||
|  | *************************************************************************************/ | ||||||
|  | /*  END LEGAL */ | ||||||
|  |  | ||||||
|  | #include <Grid/GridCore.h> | ||||||
|  |  | ||||||
|  | NAMESPACE_BEGIN(Grid);  | ||||||
|  | #define header "SharedMemoryNone: " | ||||||
|  |  | ||||||
|  | /*Construct from an MPI communicator*/ | ||||||
|  | void GlobalSharedMemory::Init(Grid_MPI_Comm comm) | ||||||
|  | { | ||||||
|  |   assert(_ShmSetup==0); | ||||||
|  |   WorldComm = 0; | ||||||
|  |   WorldRank = 0; | ||||||
|  |   WorldSize = 1; | ||||||
|  |   WorldShmComm = 0 ; | ||||||
|  |   WorldShmRank = 0 ; | ||||||
|  |   WorldShmSize = 1 ; | ||||||
|  |   WorldNodes   = 1 ; | ||||||
|  |   WorldNode    = 0 ; | ||||||
|  |   WorldShmRanks.resize(WorldSize); WorldShmRanks[0] = 0; | ||||||
|  |   WorldShmCommBufs.resize(1); | ||||||
|  |   _ShmSetup=1; | ||||||
|  | } | ||||||
|  |  | ||||||
|  | void GlobalSharedMemory::OptimalCommunicator(const Coordinate &processors,Grid_MPI_Comm & optimal_comm) | ||||||
|  | { | ||||||
|  |   optimal_comm = WorldComm; | ||||||
|  | } | ||||||
|  |  | ||||||
|  | //////////////////////////////////////////////////////////////////////////////////////////// | ||||||
|  | // Hugetlbfs mapping intended, use anonymous mmap | ||||||
|  | //////////////////////////////////////////////////////////////////////////////////////////// | ||||||
|  | #if 1 | ||||||
|  | void GlobalSharedMemory::SharedMemoryAllocate(uint64_t bytes, int flags) | ||||||
|  | { | ||||||
|  |   std::cout << header "SharedMemoryAllocate "<< bytes<< " GPU implementation "<<std::endl; | ||||||
|  |   void * ShmCommBuf ;  | ||||||
|  |   assert(_ShmSetup==1); | ||||||
|  |   assert(_ShmAlloc==0); | ||||||
|  |  | ||||||
|  |   /////////////////////////////////////////////////////////////////////////////////////////////////////////// | ||||||
|  |   // Each MPI rank should allocate our own buffer | ||||||
|  |   /////////////////////////////////////////////////////////////////////////////////////////////////////////// | ||||||
|  |   ShmCommBuf = acceleratorAllocDevice(bytes); | ||||||
|  |  | ||||||
|  |   if (ShmCommBuf == (void *)NULL ) { | ||||||
|  |     std::cerr << " SharedMemoryNone.cc acceleratorAllocDevice failed NULL pointer for " << bytes<<" bytes " << std::endl; | ||||||
|  |     exit(EXIT_FAILURE);   | ||||||
|  |   } | ||||||
|  |   if ( WorldRank == 0 ){ | ||||||
|  |     std::cout << WorldRank << header " SharedMemoryNone.cc acceleratorAllocDevice "<< bytes  | ||||||
|  | 	      << "bytes at "<< std::hex<< ShmCommBuf <<std::dec<<" for comms buffers " <<std::endl; | ||||||
|  |   } | ||||||
|  |   SharedMemoryZero(ShmCommBuf,bytes); | ||||||
|  |  | ||||||
|  |   /////////////////////////////////////////////////////////////////////////////////////////////////////////// | ||||||
|  |   // Loop over ranks/gpu's on our node | ||||||
|  |   /////////////////////////////////////////////////////////////////////////////////////////////////////////// | ||||||
|  |   WorldShmCommBufs[0] = ShmCommBuf; | ||||||
|  |  | ||||||
|  |   _ShmAllocBytes=bytes; | ||||||
|  |   _ShmAlloc=1; | ||||||
|  | } | ||||||
|  | #else | ||||||
|  | void GlobalSharedMemory::SharedMemoryAllocate(uint64_t bytes, int flags) | ||||||
|  | { | ||||||
|  |   void * ShmCommBuf ;  | ||||||
|  |   assert(_ShmSetup==1); | ||||||
|  |   assert(_ShmAlloc==0); | ||||||
|  |   int mmap_flag =0; | ||||||
|  | #ifdef MAP_ANONYMOUS | ||||||
|  |   mmap_flag = mmap_flag| MAP_SHARED | MAP_ANONYMOUS; | ||||||
|  | #endif | ||||||
|  | #ifdef MAP_ANON | ||||||
|  |   mmap_flag = mmap_flag| MAP_SHARED | MAP_ANON; | ||||||
|  | #endif | ||||||
|  | #ifdef MAP_HUGETLB | ||||||
|  |   if ( flags ) mmap_flag |= MAP_HUGETLB; | ||||||
|  | #endif | ||||||
|  |   ShmCommBuf =(void *) mmap(NULL, bytes, PROT_READ | PROT_WRITE, mmap_flag, -1, 0);  | ||||||
|  |   if (ShmCommBuf == (void *)MAP_FAILED) { | ||||||
|  |     perror("mmap failed "); | ||||||
|  |     exit(EXIT_FAILURE);   | ||||||
|  |   } | ||||||
|  | #ifdef MADV_HUGEPAGE | ||||||
|  |   if (!Hugepages ) madvise(ShmCommBuf,bytes,MADV_HUGEPAGE); | ||||||
|  | #endif | ||||||
|  |   bzero(ShmCommBuf,bytes); | ||||||
|  |   WorldShmCommBufs[0] = ShmCommBuf; | ||||||
|  |   _ShmAllocBytes=bytes; | ||||||
|  |   _ShmAlloc=1; | ||||||
|  | }; | ||||||
|  | #endif | ||||||
|  | void GlobalSharedMemory::SharedMemoryZero(void *dest,size_t bytes) | ||||||
|  | { | ||||||
|  |   acceleratorMemSet(dest,0,bytes); | ||||||
|  | } | ||||||
|  | void GlobalSharedMemory::SharedMemoryCopy(void *dest,void *src,size_t bytes) | ||||||
|  | { | ||||||
|  |   acceleratorCopyToDevice(src,dest,bytes); | ||||||
|  | } | ||||||
|  | //////////////////////////////////////////////////////// | ||||||
|  | // Global shared functionality finished | ||||||
|  | // Now move to per communicator functionality | ||||||
|  | //////////////////////////////////////////////////////// | ||||||
|  | void SharedMemory::SetCommunicator(Grid_MPI_Comm comm) | ||||||
|  | { | ||||||
|  |   assert(GlobalSharedMemory::ShmAlloc()==1); | ||||||
|  |   ShmRanks.resize(1); | ||||||
|  |   ShmCommBufs.resize(1); | ||||||
|  |   ShmRanks[0] = 0; | ||||||
|  |   ShmRank     = 0; | ||||||
|  |   ShmSize     = 1; | ||||||
|  |   ////////////////////////////////////////////////////////////////////// | ||||||
|  |   // Map ShmRank to WorldShmRank and use the right buffer | ||||||
|  |   ////////////////////////////////////////////////////////////////////// | ||||||
|  |   ShmCommBufs[0] = GlobalSharedMemory::WorldShmCommBufs[0]; | ||||||
|  |   heap_size      = GlobalSharedMemory::ShmAllocBytes(); | ||||||
|  |   ShmBufferFreeAll(); | ||||||
|  |   return; | ||||||
|  | } | ||||||
|  | ////////////////////////////////////////////////////////////////// | ||||||
|  | // On node barrier | ||||||
|  | ////////////////////////////////////////////////////////////////// | ||||||
|  | void SharedMemory::ShmBarrier(void){ return ; } | ||||||
|  |  | ||||||
|  | ////////////////////////////////////////////////////////////////////////////////////////////////////////// | ||||||
|  | // Test the shared memory is working | ||||||
|  | ////////////////////////////////////////////////////////////////////////////////////////////////////////// | ||||||
|  | void SharedMemory::SharedMemoryTest(void) { return; } | ||||||
|  |  | ||||||
|  | void *SharedMemory::ShmBuffer(int rank) | ||||||
|  | { | ||||||
|  |   return NULL; | ||||||
|  | } | ||||||
|  | void *SharedMemory::ShmBufferTranslate(int rank,void * local_p) | ||||||
|  | { | ||||||
|  |   return NULL; | ||||||
|  | } | ||||||
|  | SharedMemory::~SharedMemory() | ||||||
|  | {}; | ||||||
|  |  | ||||||
|  | NAMESPACE_END(Grid);  | ||||||
|  |  | ||||||
| @@ -1,4 +1,4 @@ | |||||||
|     /*************************************************************************************
 | /*************************************************************************************
 | ||||||
| 
 | 
 | ||||||
|     Grid physics library, www.github.com/paboyle/Grid  |     Grid physics library, www.github.com/paboyle/Grid  | ||||||
| 
 | 
 | ||||||
| @@ -23,8 +23,8 @@ Author: Peter Boyle <paboyle@ph.ed.ac.uk> | |||||||
|     51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. |     51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. | ||||||
| 
 | 
 | ||||||
|     See the full license in the file "LICENSE" in the top level distribution directory |     See the full license in the file "LICENSE" in the top level distribution directory | ||||||
|     *************************************************************************************/ | *************************************************************************************/ | ||||||
|     /*  END LEGAL */ | /*  END LEGAL */ | ||||||
| #ifndef _GRID_CSHIFT_H_ | #ifndef _GRID_CSHIFT_H_ | ||||||
| #define _GRID_CSHIFT_H_ | #define _GRID_CSHIFT_H_ | ||||||
| 
 | 
 | ||||||
| @@ -38,7 +38,25 @@ Author: Peter Boyle <paboyle@ph.ed.ac.uk> | |||||||
| #include <Grid/cshift/Cshift_mpi.h> | #include <Grid/cshift/Cshift_mpi.h> | ||||||
| #endif  | #endif  | ||||||
| 
 | 
 | ||||||
|  | #ifdef GRID_COMMS_MPI3 | ||||||
|  | #include <Grid/cshift/Cshift_mpi.h> | ||||||
|  | #endif  | ||||||
|  | 
 | ||||||
|  | #ifdef GRID_COMMS_MPIT | ||||||
|  | #include <Grid/cshift/Cshift_mpi.h> | ||||||
|  | #endif  | ||||||
|  | 
 | ||||||
| #ifdef GRID_COMMS_SHMEM | #ifdef GRID_COMMS_SHMEM | ||||||
| #include <Grid/cshift/Cshift_mpi.h> // uses same implementation of communicator | #include <Grid/cshift/Cshift_mpi.h> // uses same implementation of communicator | ||||||
| #endif  | #endif  | ||||||
|  | 
 | ||||||
|  | NAMESPACE_BEGIN(Grid); | ||||||
|  | 
 | ||||||
|  | template<class Expression,typename std::enable_if<is_lattice_expr<Expression>::value,void>::type * = nullptr>  | ||||||
|  | auto Cshift(const Expression &expr,int dim,int shift)  -> decltype(closure(expr))  | ||||||
|  | { | ||||||
|  |   return Cshift(closure(expr),dim,shift); | ||||||
|  | } | ||||||
|  | NAMESPACE_END(Grid); | ||||||
|  | 
 | ||||||
| #endif | #endif | ||||||
							
								
								
									
										496
									
								
								Grid/cshift/Cshift_common.h
									
									
									
									
									
										Normal file
									
								
							
							
						
						
									
										496
									
								
								Grid/cshift/Cshift_common.h
									
									
									
									
									
										Normal file
									
								
							| @@ -0,0 +1,496 @@ | |||||||
|  | /************************************************************************************* | ||||||
|  |  | ||||||
|  |     Grid physics library, www.github.com/paboyle/Grid  | ||||||
|  |  | ||||||
|  |     Source file: ./lib/cshift/Cshift_common.h | ||||||
|  |  | ||||||
|  |     Copyright (C) 2015 | ||||||
|  |  | ||||||
|  | Author: Peter Boyle <paboyle@ph.ed.ac.uk> | ||||||
|  |  | ||||||
|  |     This program is free software; you can redistribute it and/or modify | ||||||
|  |     it under the terms of the GNU General Public License as published by | ||||||
|  |     the Free Software Foundation; either version 2 of the License, or | ||||||
|  |     (at your option) any later version. | ||||||
|  |  | ||||||
|  |     This program is distributed in the hope that it will be useful, | ||||||
|  |     but WITHOUT ANY WARRANTY; without even the implied warranty of | ||||||
|  |     MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the | ||||||
|  |     GNU General Public License for more details. | ||||||
|  |  | ||||||
|  |     You should have received a copy of the GNU General Public License along | ||||||
|  |     with this program; if not, write to the Free Software Foundation, Inc., | ||||||
|  |     51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. | ||||||
|  |  | ||||||
|  |     See the full license in the file "LICENSE" in the top level distribution directory | ||||||
|  |     *************************************************************************************/ | ||||||
|  |     /*  END LEGAL */ | ||||||
|  | #pragma once | ||||||
|  |  | ||||||
|  | NAMESPACE_BEGIN(Grid); | ||||||
|  |  | ||||||
|  | extern Vector<std::pair<int,int> > Cshift_table;  | ||||||
|  |  | ||||||
|  | /////////////////////////////////////////////////////////////////// | ||||||
|  | // Gather for when there is no need to SIMD split  | ||||||
|  | /////////////////////////////////////////////////////////////////// | ||||||
|  | template<class vobj> void  | ||||||
|  | Gather_plane_simple (const Lattice<vobj> &rhs,cshiftVector<vobj> &buffer,int dimension,int plane,int cbmask, int off=0) | ||||||
|  | { | ||||||
|  |   int rd = rhs.Grid()->_rdimensions[dimension]; | ||||||
|  |  | ||||||
|  |   if ( !rhs.Grid()->CheckerBoarded(dimension) ) { | ||||||
|  |     cbmask = 0x3; | ||||||
|  |   } | ||||||
|  |    | ||||||
|  |   int so=plane*rhs.Grid()->_ostride[dimension]; // base offset for start of plane  | ||||||
|  |   int e1=rhs.Grid()->_slice_nblock[dimension]; | ||||||
|  |   int e2=rhs.Grid()->_slice_block[dimension]; | ||||||
|  |   int ent = 0; | ||||||
|  |  | ||||||
|  |   if(Cshift_table.size()<e1*e2) Cshift_table.resize(e1*e2); // Let it grow to biggest | ||||||
|  |  | ||||||
|  |   int stride=rhs.Grid()->_slice_stride[dimension]; | ||||||
|  |  | ||||||
|  |   if ( cbmask == 0x3 ) {  | ||||||
|  |     for(int n=0;n<e1;n++){ | ||||||
|  |       for(int b=0;b<e2;b++){ | ||||||
|  | 	int o  = n*stride; | ||||||
|  | 	int bo = n*e2; | ||||||
|  | 	Cshift_table[ent++] = std::pair<int,int>(off+bo+b,so+o+b); | ||||||
|  |       } | ||||||
|  |     } | ||||||
|  |   } else {  | ||||||
|  |      int bo=0; | ||||||
|  |      for(int n=0;n<e1;n++){ | ||||||
|  |        for(int b=0;b<e2;b++){ | ||||||
|  | 	 int o  = n*stride; | ||||||
|  | 	 int ocb=1<<rhs.Grid()->CheckerBoardFromOindex(o+b); | ||||||
|  | 	 if ( ocb &cbmask ) { | ||||||
|  | 	   Cshift_table[ent++]=std::pair<int,int> (off+bo++,so+o+b); | ||||||
|  | 	 } | ||||||
|  |        } | ||||||
|  |      } | ||||||
|  |   } | ||||||
|  |   { | ||||||
|  |     auto buffer_p = & buffer[0]; | ||||||
|  |     auto table = &Cshift_table[0]; | ||||||
|  | #ifdef ACCELERATOR_CSHIFT     | ||||||
|  |     autoView(rhs_v , rhs, AcceleratorRead); | ||||||
|  |     accelerator_for(i,ent,vobj::Nsimd(),{ | ||||||
|  | 	coalescedWrite(buffer_p[table[i].first],coalescedRead(rhs_v[table[i].second])); | ||||||
|  |     }); | ||||||
|  | #else | ||||||
|  |     autoView(rhs_v , rhs, CpuRead); | ||||||
|  |     thread_for(i,ent,{ | ||||||
|  |       buffer_p[table[i].first]=rhs_v[table[i].second]; | ||||||
|  |     }); | ||||||
|  | #endif | ||||||
|  |   } | ||||||
|  | } | ||||||
|  |  | ||||||
|  | /////////////////////////////////////////////////////////////////// | ||||||
|  | // Gather for when there *is* need to SIMD split  | ||||||
|  | /////////////////////////////////////////////////////////////////// | ||||||
|  | template<class vobj> void  | ||||||
|  | Gather_plane_extract(const Lattice<vobj> &rhs, | ||||||
|  | 		     ExtractPointerArray<typename vobj::scalar_object> pointers, | ||||||
|  | 		     int dimension,int plane,int cbmask) | ||||||
|  | { | ||||||
|  |   int rd = rhs.Grid()->_rdimensions[dimension]; | ||||||
|  |  | ||||||
|  |   if ( !rhs.Grid()->CheckerBoarded(dimension) ) { | ||||||
|  |     cbmask = 0x3; | ||||||
|  |   } | ||||||
|  |  | ||||||
|  |   int so  = plane*rhs.Grid()->_ostride[dimension]; // base offset for start of plane  | ||||||
|  |  | ||||||
|  |   int e1=rhs.Grid()->_slice_nblock[dimension]; | ||||||
|  |   int e2=rhs.Grid()->_slice_block[dimension]; | ||||||
|  |   int n1=rhs.Grid()->_slice_stride[dimension]; | ||||||
|  |  | ||||||
|  |   if ( cbmask ==0x3){ | ||||||
|  | #ifdef ACCELERATOR_CSHIFT | ||||||
|  |     autoView(rhs_v , rhs, AcceleratorRead); | ||||||
|  |     accelerator_for(nn,e1*e2,1,{ | ||||||
|  | 	int n = nn%e1; | ||||||
|  | 	int b = nn/e1; | ||||||
|  | 	int o      =   n*n1; | ||||||
|  | 	int offset = b+n*e2; | ||||||
|  | 	 | ||||||
|  | 	vobj temp =rhs_v[so+o+b]; | ||||||
|  | 	extract<vobj>(temp,pointers,offset); | ||||||
|  |       }); | ||||||
|  | #else | ||||||
|  |     autoView(rhs_v , rhs, CpuRead); | ||||||
|  |     thread_for2d(n,e1,b,e2,{ | ||||||
|  | 	int o      =   n*n1; | ||||||
|  | 	int offset = b+n*e2; | ||||||
|  | 	 | ||||||
|  | 	vobj temp =rhs_v[so+o+b]; | ||||||
|  | 	extract<vobj>(temp,pointers,offset); | ||||||
|  |       }); | ||||||
|  | #endif | ||||||
|  |   } else {  | ||||||
|  |     Coordinate rdim=rhs.Grid()->_rdimensions; | ||||||
|  |     Coordinate cdm =rhs.Grid()->_checker_dim_mask; | ||||||
|  |     std::cout << " Dense packed buffer WARNING " <<std::endl; // Does this get called twice once for each cb? | ||||||
|  | #ifdef ACCELERATOR_CSHIFT     | ||||||
|  |     autoView(rhs_v , rhs, AcceleratorRead); | ||||||
|  |     accelerator_for(nn,e1*e2,1,{ | ||||||
|  | 	int n = nn%e1; | ||||||
|  | 	int b = nn/e1; | ||||||
|  |  | ||||||
|  | 	Coordinate coor; | ||||||
|  |  | ||||||
|  | 	int o=n*n1; | ||||||
|  | 	int oindex = o+b; | ||||||
|  |  | ||||||
|  |        	int cb = RedBlackCheckerBoardFromOindex(oindex, rdim, cdm); | ||||||
|  |  | ||||||
|  | 	int ocb=1<<cb; | ||||||
|  | 	int offset = b+n*e2; | ||||||
|  |  | ||||||
|  | 	if ( ocb & cbmask ) { | ||||||
|  | 	  vobj temp =rhs_v[so+o+b]; | ||||||
|  | 	  extract<vobj>(temp,pointers,offset); | ||||||
|  | 	} | ||||||
|  |       }); | ||||||
|  | #else | ||||||
|  |     autoView(rhs_v , rhs, CpuRead); | ||||||
|  |     thread_for2d(n,e1,b,e2,{ | ||||||
|  |  | ||||||
|  | 	Coordinate coor; | ||||||
|  |  | ||||||
|  | 	int o=n*n1; | ||||||
|  | 	int oindex = o+b; | ||||||
|  |  | ||||||
|  |        	int cb = RedBlackCheckerBoardFromOindex(oindex, rdim, cdm); | ||||||
|  |  | ||||||
|  | 	int ocb=1<<cb; | ||||||
|  | 	int offset = b+n*e2; | ||||||
|  |  | ||||||
|  | 	if ( ocb & cbmask ) { | ||||||
|  | 	  vobj temp =rhs_v[so+o+b]; | ||||||
|  | 	  extract<vobj>(temp,pointers,offset); | ||||||
|  | 	} | ||||||
|  |       }); | ||||||
|  | #endif | ||||||
|  |   } | ||||||
|  | } | ||||||
|  |  | ||||||
|  | ////////////////////////////////////////////////////// | ||||||
|  | // Scatter for when there is no need to SIMD split | ||||||
|  | ////////////////////////////////////////////////////// | ||||||
|  | template<class vobj> void Scatter_plane_simple (Lattice<vobj> &rhs,cshiftVector<vobj> &buffer, int dimension,int plane,int cbmask) | ||||||
|  | { | ||||||
|  |   int rd = rhs.Grid()->_rdimensions[dimension]; | ||||||
|  |  | ||||||
|  |   if ( !rhs.Grid()->CheckerBoarded(dimension) ) { | ||||||
|  |     cbmask=0x3; | ||||||
|  |   } | ||||||
|  |  | ||||||
|  |   int so  = plane*rhs.Grid()->_ostride[dimension]; // base offset for start of plane  | ||||||
|  |      | ||||||
|  |   int e1=rhs.Grid()->_slice_nblock[dimension]; | ||||||
|  |   int e2=rhs.Grid()->_slice_block[dimension]; | ||||||
|  |   int stride=rhs.Grid()->_slice_stride[dimension]; | ||||||
|  |  | ||||||
|  |   if(Cshift_table.size()<e1*e2) Cshift_table.resize(e1*e2); // Let it grow to biggest | ||||||
|  |  | ||||||
|  |   int ent    =0; | ||||||
|  |  | ||||||
|  |   if ( cbmask ==0x3 ) { | ||||||
|  |  | ||||||
|  |     for(int n=0;n<e1;n++){ | ||||||
|  |       for(int b=0;b<e2;b++){ | ||||||
|  | 	int o   =n*rhs.Grid()->_slice_stride[dimension]; | ||||||
|  | 	int bo  =n*rhs.Grid()->_slice_block[dimension]; | ||||||
|  | 	Cshift_table[ent++] = std::pair<int,int>(so+o+b,bo+b); | ||||||
|  |       } | ||||||
|  |     } | ||||||
|  |  | ||||||
|  |   } else {  | ||||||
|  |     int bo=0; | ||||||
|  |     for(int n=0;n<e1;n++){ | ||||||
|  |       for(int b=0;b<e2;b++){ | ||||||
|  | 	int o   =n*rhs.Grid()->_slice_stride[dimension]; | ||||||
|  | 	int ocb=1<<rhs.Grid()->CheckerBoardFromOindex(o+b);// Could easily be a table lookup | ||||||
|  | 	if ( ocb & cbmask ) { | ||||||
|  | 	  Cshift_table[ent++]=std::pair<int,int> (so+o+b,bo++); | ||||||
|  | 	} | ||||||
|  |       } | ||||||
|  |     } | ||||||
|  |   } | ||||||
|  |    | ||||||
|  |   { | ||||||
|  |     auto buffer_p = & buffer[0]; | ||||||
|  |     auto table = &Cshift_table[0]; | ||||||
|  | #ifdef ACCELERATOR_CSHIFT     | ||||||
|  |     autoView( rhs_v, rhs, AcceleratorWrite); | ||||||
|  |     accelerator_for(i,ent,vobj::Nsimd(),{ | ||||||
|  | 	coalescedWrite(rhs_v[table[i].first],coalescedRead(buffer_p[table[i].second])); | ||||||
|  |     }); | ||||||
|  | #else | ||||||
|  |     autoView( rhs_v, rhs, CpuWrite); | ||||||
|  |     thread_for(i,ent,{ | ||||||
|  |       rhs_v[table[i].first]=buffer_p[table[i].second]; | ||||||
|  |     }); | ||||||
|  | #endif | ||||||
|  |   } | ||||||
|  | } | ||||||
|  |  | ||||||
|  | ////////////////////////////////////////////////////// | ||||||
|  | // Scatter for when there *is* need to SIMD split | ||||||
|  | ////////////////////////////////////////////////////// | ||||||
|  | template<class vobj> void Scatter_plane_merge(Lattice<vobj> &rhs,ExtractPointerArray<typename vobj::scalar_object> pointers,int dimension,int plane,int cbmask) | ||||||
|  | { | ||||||
|  |   int rd = rhs.Grid()->_rdimensions[dimension]; | ||||||
|  |  | ||||||
|  |   if ( !rhs.Grid()->CheckerBoarded(dimension) ) { | ||||||
|  |     cbmask=0x3; | ||||||
|  |   } | ||||||
|  |  | ||||||
|  |   int so  = plane*rhs.Grid()->_ostride[dimension]; // base offset for start of plane  | ||||||
|  |      | ||||||
|  |   int e1=rhs.Grid()->_slice_nblock[dimension]; | ||||||
|  |   int e2=rhs.Grid()->_slice_block[dimension]; | ||||||
|  |  | ||||||
|  |   if(cbmask ==0x3 ) { | ||||||
|  |     int _slice_stride = rhs.Grid()->_slice_stride[dimension]; | ||||||
|  |     int _slice_block = rhs.Grid()->_slice_block[dimension]; | ||||||
|  | #ifdef ACCELERATOR_CSHIFT     | ||||||
|  |     autoView( rhs_v , rhs, AcceleratorWrite); | ||||||
|  |     accelerator_for(nn,e1*e2,1,{ | ||||||
|  | 	int n = nn%e1; | ||||||
|  | 	int b = nn/e1; | ||||||
|  | 	int o      = n*_slice_stride; | ||||||
|  | 	int offset = b+n*_slice_block; | ||||||
|  | 	merge(rhs_v[so+o+b],pointers,offset); | ||||||
|  |       }); | ||||||
|  | #else | ||||||
|  |     autoView( rhs_v , rhs, CpuWrite); | ||||||
|  |     thread_for2d(n,e1,b,e2,{ | ||||||
|  | 	int o      = n*_slice_stride; | ||||||
|  | 	int offset = b+n*_slice_block; | ||||||
|  | 	merge(rhs_v[so+o+b],pointers,offset); | ||||||
|  |     }); | ||||||
|  | #endif | ||||||
|  |   } else {  | ||||||
|  |  | ||||||
|  |     // Case of SIMD split AND checker dim cannot currently be hit, except in  | ||||||
|  |     // Test_cshift_red_black code. | ||||||
|  |     std::cout << "Scatter_plane merge assert(0); think this is buggy FIXME "<< std::endl;// think this is buggy FIXME | ||||||
|  |     std::cout<<" Unthreaded warning -- buffer is not densely packed ??"<<std::endl; | ||||||
|  |     assert(0); // This will fail if hit on GPU | ||||||
|  |     autoView( rhs_v, rhs, CpuWrite); | ||||||
|  |     for(int n=0;n<e1;n++){ | ||||||
|  |       for(int b=0;b<e2;b++){ | ||||||
|  | 	int o      = n*rhs.Grid()->_slice_stride[dimension]; | ||||||
|  | 	int offset = b+n*rhs.Grid()->_slice_block[dimension]; | ||||||
|  | 	int ocb=1<<rhs.Grid()->CheckerBoardFromOindex(o+b); | ||||||
|  | 	if ( ocb&cbmask ) { | ||||||
|  | 	  merge(rhs_v[so+o+b],pointers,offset); | ||||||
|  | 	} | ||||||
|  |       } | ||||||
|  |     } | ||||||
|  |   } | ||||||
|  | } | ||||||
|  |  | ||||||
|  | ////////////////////////////////////////////////////// | ||||||
|  | // local to node block strided copies | ||||||
|  | ////////////////////////////////////////////////////// | ||||||
|  |  | ||||||
|  | template<class vobj> void Copy_plane(Lattice<vobj>& lhs,const Lattice<vobj> &rhs, int dimension,int lplane,int rplane,int cbmask) | ||||||
|  | { | ||||||
|  |   int rd = rhs.Grid()->_rdimensions[dimension]; | ||||||
|  |  | ||||||
|  |   if ( !rhs.Grid()->CheckerBoarded(dimension) ) { | ||||||
|  |     cbmask=0x3; | ||||||
|  |   } | ||||||
|  |  | ||||||
|  |   int ro  = rplane*rhs.Grid()->_ostride[dimension]; // base offset for start of plane  | ||||||
|  |   int lo  = lplane*lhs.Grid()->_ostride[dimension]; // base offset for start of plane  | ||||||
|  |  | ||||||
|  |   int e1=rhs.Grid()->_slice_nblock[dimension]; // clearly loop invariant for icpc | ||||||
|  |   int e2=rhs.Grid()->_slice_block[dimension]; | ||||||
|  |   int stride = rhs.Grid()->_slice_stride[dimension]; | ||||||
|  |  | ||||||
|  |   if(Cshift_table.size()<e1*e2) Cshift_table.resize(e1*e2); // Let it grow to biggest | ||||||
|  |  | ||||||
|  |   int ent=0; | ||||||
|  |  | ||||||
|  |   if(cbmask == 0x3 ){ | ||||||
|  |     for(int n=0;n<e1;n++){ | ||||||
|  |       for(int b=0;b<e2;b++){ | ||||||
|  |         int o =n*stride+b; | ||||||
|  | 	Cshift_table[ent++] = std::pair<int,int>(lo+o,ro+o); | ||||||
|  |       } | ||||||
|  |     } | ||||||
|  |   } else {  | ||||||
|  |     for(int n=0;n<e1;n++){ | ||||||
|  |       for(int b=0;b<e2;b++){ | ||||||
|  |         int o =n*stride+b; | ||||||
|  |         int ocb=1<<lhs.Grid()->CheckerBoardFromOindex(o); | ||||||
|  |         if ( ocb&cbmask ) { | ||||||
|  | 	  Cshift_table[ent++] = std::pair<int,int>(lo+o,ro+o); | ||||||
|  | 	} | ||||||
|  |       } | ||||||
|  |     } | ||||||
|  |   } | ||||||
|  |  | ||||||
|  |   { | ||||||
|  |     auto table = &Cshift_table[0]; | ||||||
|  | #ifdef ACCELERATOR_CSHIFT     | ||||||
|  |     autoView(rhs_v , rhs, AcceleratorRead); | ||||||
|  |     autoView(lhs_v , lhs, AcceleratorWrite); | ||||||
|  |     accelerator_for(i,ent,vobj::Nsimd(),{ | ||||||
|  |       coalescedWrite(lhs_v[table[i].first],coalescedRead(rhs_v[table[i].second])); | ||||||
|  |     }); | ||||||
|  | #else | ||||||
|  |     autoView(rhs_v , rhs, CpuRead); | ||||||
|  |     autoView(lhs_v , lhs, CpuWrite); | ||||||
|  |     thread_for(i,ent,{ | ||||||
|  |       lhs_v[table[i].first]=rhs_v[table[i].second]; | ||||||
|  |     }); | ||||||
|  | #endif | ||||||
|  |   } | ||||||
|  | } | ||||||
|  |  | ||||||
|  | template<class vobj> void Copy_plane_permute(Lattice<vobj>& lhs,const Lattice<vobj> &rhs, int dimension,int lplane,int rplane,int cbmask,int permute_type) | ||||||
|  | { | ||||||
|  |   int rd = rhs.Grid()->_rdimensions[dimension]; | ||||||
|  |  | ||||||
|  |   if ( !rhs.Grid()->CheckerBoarded(dimension) ) { | ||||||
|  |     cbmask=0x3; | ||||||
|  |   } | ||||||
|  |  | ||||||
|  |   int ro  = rplane*rhs.Grid()->_ostride[dimension]; // base offset for start of plane  | ||||||
|  |   int lo  = lplane*lhs.Grid()->_ostride[dimension]; // base offset for start of plane  | ||||||
|  |  | ||||||
|  |   int e1=rhs.Grid()->_slice_nblock[dimension]; | ||||||
|  |   int e2=rhs.Grid()->_slice_block [dimension]; | ||||||
|  |   int stride = rhs.Grid()->_slice_stride[dimension]; | ||||||
|  |  | ||||||
|  |   if(Cshift_table.size()<e1*e2) Cshift_table.resize(e1*e2); // Let it grow to biggest | ||||||
|  |  | ||||||
|  |   int ent=0; | ||||||
|  |  | ||||||
|  |   if ( cbmask == 0x3 ) { | ||||||
|  |     for(int n=0;n<e1;n++){ | ||||||
|  |     for(int b=0;b<e2;b++){ | ||||||
|  |       int o  =n*stride; | ||||||
|  |       Cshift_table[ent++] = std::pair<int,int>(lo+o+b,ro+o+b); | ||||||
|  |     }} | ||||||
|  |   } else { | ||||||
|  |     for(int n=0;n<e1;n++){ | ||||||
|  |     for(int b=0;b<e2;b++){ | ||||||
|  |       int o  =n*stride; | ||||||
|  |       int ocb=1<<lhs.Grid()->CheckerBoardFromOindex(o+b); | ||||||
|  |       if ( ocb&cbmask ) Cshift_table[ent++] = std::pair<int,int>(lo+o+b,ro+o+b); | ||||||
|  |     }} | ||||||
|  |   } | ||||||
|  |  | ||||||
|  |   { | ||||||
|  |     auto table = &Cshift_table[0]; | ||||||
|  | #ifdef ACCELERATOR_CSHIFT     | ||||||
|  |     autoView( rhs_v, rhs, AcceleratorRead); | ||||||
|  |     autoView( lhs_v, lhs, AcceleratorWrite); | ||||||
|  |     accelerator_for(i,ent,1,{ | ||||||
|  |       permute(lhs_v[table[i].first],rhs_v[table[i].second],permute_type); | ||||||
|  |     }); | ||||||
|  | #else | ||||||
|  |     autoView( rhs_v, rhs, CpuRead); | ||||||
|  |     autoView( lhs_v, lhs, CpuWrite); | ||||||
|  |     thread_for(i,ent,{ | ||||||
|  |       permute(lhs_v[table[i].first],rhs_v[table[i].second],permute_type); | ||||||
|  |     }); | ||||||
|  | #endif | ||||||
|  |   } | ||||||
|  | } | ||||||
|  |  | ||||||
|  | ////////////////////////////////////////////////////// | ||||||
|  | // Local to node Cshift | ||||||
|  | ////////////////////////////////////////////////////// | ||||||
|  | template<class vobj> void Cshift_local(Lattice<vobj>& ret,const Lattice<vobj> &rhs,int dimension,int shift) | ||||||
|  | { | ||||||
|  |   int sshift[2]; | ||||||
|  |  | ||||||
|  |   sshift[0] = rhs.Grid()->CheckerBoardShiftForCB(rhs.Checkerboard(),dimension,shift,Even); | ||||||
|  |   sshift[1] = rhs.Grid()->CheckerBoardShiftForCB(rhs.Checkerboard(),dimension,shift,Odd); | ||||||
|  |  | ||||||
|  |   if ( sshift[0] == sshift[1] ) { | ||||||
|  |     Cshift_local(ret,rhs,dimension,shift,0x3); | ||||||
|  |   } else { | ||||||
|  |     Cshift_local(ret,rhs,dimension,shift,0x1);// if checkerboard is unfavourable take two passes | ||||||
|  |     Cshift_local(ret,rhs,dimension,shift,0x2);// both with block stride loop iteration | ||||||
|  |   } | ||||||
|  | } | ||||||
|  |  | ||||||
|  | template<class vobj> void Cshift_local(Lattice<vobj> &ret,const Lattice<vobj> &rhs,int dimension,int shift,int cbmask) | ||||||
|  | { | ||||||
|  |   GridBase *grid = rhs.Grid(); | ||||||
|  |   int fd = grid->_fdimensions[dimension]; | ||||||
|  |   int rd = grid->_rdimensions[dimension]; | ||||||
|  |   int ld = grid->_ldimensions[dimension]; | ||||||
|  |   int gd = grid->_gdimensions[dimension]; | ||||||
|  |   int ly = grid->_simd_layout[dimension]; | ||||||
|  |  | ||||||
|  |   // Map to always positive shift modulo global full dimension. | ||||||
|  |   shift = (shift+fd)%fd; | ||||||
|  |  | ||||||
|  |   // the permute type | ||||||
|  |   ret.Checkerboard() = grid->CheckerBoardDestination(rhs.Checkerboard(),shift,dimension); | ||||||
|  |   int permute_dim =grid->PermuteDim(dimension); | ||||||
|  |   int permute_type=grid->PermuteType(dimension); | ||||||
|  |   int permute_type_dist; | ||||||
|  |  | ||||||
|  |   for(int x=0;x<rd;x++){        | ||||||
|  |  | ||||||
|  |     //    int o   = 0; | ||||||
|  |     int bo  = x * grid->_ostride[dimension]; | ||||||
|  |     int cb= (cbmask==0x2)? Odd : Even; | ||||||
|  |  | ||||||
|  |     int sshift = grid->CheckerBoardShiftForCB(rhs.Checkerboard(),dimension,shift,cb); | ||||||
|  |     int sx     = (x+sshift)%rd; | ||||||
|  |      | ||||||
|  |     // wrap is whether sshift > rd. | ||||||
|  |     //  num is sshift mod rd. | ||||||
|  |     //  | ||||||
|  |     //  shift 7 | ||||||
|  |     // | ||||||
|  |     //  XoXo YcYc  | ||||||
|  |     //  oXoX cYcY | ||||||
|  |     //  XoXo YcYc | ||||||
|  |     //  oXoX cYcY | ||||||
|  |     // | ||||||
|  |     //  sshift --  | ||||||
|  |     // | ||||||
|  |     //  XX YY ; 3 | ||||||
|  |     //  XX YY ; 0 | ||||||
|  |     //  XX YY ; 3 | ||||||
|  |     //  XX YY ; 0 | ||||||
|  |     // | ||||||
|  |     int permute_slice=0; | ||||||
|  |     if(permute_dim){ | ||||||
|  |       int wrap = sshift/rd; wrap=wrap % ly; | ||||||
|  |       int  num = sshift%rd; | ||||||
|  |  | ||||||
|  |       if ( x< rd-num ) permute_slice=wrap; | ||||||
|  |       else permute_slice = (wrap+1)%ly; | ||||||
|  |  | ||||||
|  |       if ( (ly>2) && (permute_slice) ) { | ||||||
|  | 	assert(permute_type & RotateBit); | ||||||
|  | 	permute_type_dist = permute_type|permute_slice; | ||||||
|  |       } else { | ||||||
|  | 	permute_type_dist = permute_type; | ||||||
|  |       } | ||||||
|  |     } | ||||||
|  |  | ||||||
|  |     if ( permute_slice ) Copy_plane_permute(ret,rhs,dimension,x,sx,cbmask,permute_type_dist); | ||||||
|  |     else                 Copy_plane(ret,rhs,dimension,x,sx,cbmask);  | ||||||
|  |    | ||||||
|  |   } | ||||||
|  | } | ||||||
|  | NAMESPACE_END(Grid); | ||||||
|  |  | ||||||
							
								
								
									
										467
									
								
								Grid/cshift/Cshift_mpi.h
									
									
									
									
									
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								Grid/cshift/Cshift_mpi.h
									
									
									
									
									
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							| @@ -0,0 +1,467 @@ | |||||||
|  | /************************************************************************************* | ||||||
|  |  | ||||||
|  |     Grid physics library, www.github.com/paboyle/Grid  | ||||||
|  |  | ||||||
|  |     Source file: ./lib/cshift/Cshift_mpi.h | ||||||
|  |  | ||||||
|  |     Copyright (C) 2015 | ||||||
|  |  | ||||||
|  | Author: Peter Boyle <paboyle@ph.ed.ac.uk> | ||||||
|  | Author: paboyle <paboyle@ph.ed.ac.uk> | ||||||
|  |  | ||||||
|  |     This program is free software; you can redistribute it and/or modify | ||||||
|  |     it under the terms of the GNU General Public License as published by | ||||||
|  |     the Free Software Foundation; either version 2 of the License, or | ||||||
|  |     (at your option) any later version. | ||||||
|  |  | ||||||
|  |     This program is distributed in the hope that it will be useful, | ||||||
|  |     but WITHOUT ANY WARRANTY; without even the implied warranty of | ||||||
|  |     MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the | ||||||
|  |     GNU General Public License for more details. | ||||||
|  |  | ||||||
|  |     You should have received a copy of the GNU General Public License along | ||||||
|  |     with this program; if not, write to the Free Software Foundation, Inc., | ||||||
|  |     51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. | ||||||
|  |  | ||||||
|  |     See the full license in the file "LICENSE" in the top level distribution directory | ||||||
|  | *************************************************************************************/ | ||||||
|  | /*  END LEGAL */ | ||||||
|  | #ifndef _GRID_CSHIFT_MPI_H_ | ||||||
|  | #define _GRID_CSHIFT_MPI_H_ | ||||||
|  |  | ||||||
|  |  | ||||||
|  | NAMESPACE_BEGIN(Grid);  | ||||||
|  |  | ||||||
|  | template<class vobj> Lattice<vobj> Cshift(const Lattice<vobj> &rhs,int dimension,int shift) | ||||||
|  | { | ||||||
|  |   typedef typename vobj::vector_type vector_type; | ||||||
|  |   typedef typename vobj::scalar_type scalar_type; | ||||||
|  |  | ||||||
|  |   Lattice<vobj> ret(rhs.Grid());  | ||||||
|  |    | ||||||
|  |   int fd = rhs.Grid()->_fdimensions[dimension]; | ||||||
|  |   int rd = rhs.Grid()->_rdimensions[dimension]; | ||||||
|  |  | ||||||
|  |   // Map to always positive shift modulo global full dimension. | ||||||
|  |   shift = (shift+fd)%fd; | ||||||
|  |  | ||||||
|  |   ret.Checkerboard() = rhs.Grid()->CheckerBoardDestination(rhs.Checkerboard(),shift,dimension); | ||||||
|  |          | ||||||
|  |   // the permute type | ||||||
|  |   int simd_layout     = rhs.Grid()->_simd_layout[dimension]; | ||||||
|  |   int comm_dim        = rhs.Grid()->_processors[dimension] >1 ; | ||||||
|  |   int splice_dim      = rhs.Grid()->_simd_layout[dimension]>1 && (comm_dim); | ||||||
|  |  | ||||||
|  |  | ||||||
|  |   if ( !comm_dim ) { | ||||||
|  |     //std::cout << "CSHIFT: Cshift_local" <<std::endl; | ||||||
|  |     Cshift_local(ret,rhs,dimension,shift); // Handles checkerboarding | ||||||
|  |   } else if ( splice_dim ) { | ||||||
|  |     //std::cout << "CSHIFT: Cshift_comms_simd call - splice_dim = " << splice_dim << " shift " << shift << " dimension = " << dimension << std::endl; | ||||||
|  |     Cshift_comms_simd(ret,rhs,dimension,shift); | ||||||
|  |   } else { | ||||||
|  |     //std::cout << "CSHIFT: Cshift_comms" <<std::endl; | ||||||
|  |     Cshift_comms(ret,rhs,dimension,shift); | ||||||
|  |   } | ||||||
|  |   return ret; | ||||||
|  | } | ||||||
|  |  | ||||||
|  | template<class vobj> void Cshift_comms(Lattice<vobj>& ret,const Lattice<vobj> &rhs,int dimension,int shift) | ||||||
|  | { | ||||||
|  |   int sshift[2]; | ||||||
|  |  | ||||||
|  |   sshift[0] = rhs.Grid()->CheckerBoardShiftForCB(rhs.Checkerboard(),dimension,shift,Even); | ||||||
|  |   sshift[1] = rhs.Grid()->CheckerBoardShiftForCB(rhs.Checkerboard(),dimension,shift,Odd); | ||||||
|  |  | ||||||
|  |   //  std::cout << "Cshift_comms dim "<<dimension<<"cb "<<rhs.Checkerboard()<<"shift "<<shift<<" sshift " << sshift[0]<<" "<<sshift[1]<<std::endl; | ||||||
|  |   if ( sshift[0] == sshift[1] ) { | ||||||
|  |     //    std::cout << "Single pass Cshift_comms" <<std::endl; | ||||||
|  |     Cshift_comms(ret,rhs,dimension,shift,0x3); | ||||||
|  |   } else { | ||||||
|  |     //    std::cout << "Two pass Cshift_comms" <<std::endl; | ||||||
|  |     Cshift_comms(ret,rhs,dimension,shift,0x1);// if checkerboard is unfavourable take two passes | ||||||
|  |     Cshift_comms(ret,rhs,dimension,shift,0x2);// both with block stride loop iteration | ||||||
|  |   } | ||||||
|  | } | ||||||
|  |  | ||||||
|  | template<class vobj> void Cshift_comms_simd(Lattice<vobj>& ret,const Lattice<vobj> &rhs,int dimension,int shift) | ||||||
|  | { | ||||||
|  |   int sshift[2]; | ||||||
|  |  | ||||||
|  |   sshift[0] = rhs.Grid()->CheckerBoardShiftForCB(rhs.Checkerboard(),dimension,shift,Even); | ||||||
|  |   sshift[1] = rhs.Grid()->CheckerBoardShiftForCB(rhs.Checkerboard(),dimension,shift,Odd); | ||||||
|  |  | ||||||
|  |   //std::cout << "Cshift_comms_simd dim "<<dimension<<"cb "<<rhs.checkerboard<<"shift "<<shift<<" sshift " << sshift[0]<<" "<<sshift[1]<<std::endl; | ||||||
|  |   if ( sshift[0] == sshift[1] ) { | ||||||
|  |     //std::cout << "Single pass Cshift_comms" <<std::endl; | ||||||
|  |     Cshift_comms_simd(ret,rhs,dimension,shift,0x3); | ||||||
|  |   } else { | ||||||
|  |     //std::cout << "Two pass Cshift_comms" <<std::endl; | ||||||
|  |     Cshift_comms_simd(ret,rhs,dimension,shift,0x1);// if checkerboard is unfavourable take two passes | ||||||
|  |     Cshift_comms_simd(ret,rhs,dimension,shift,0x2);// both with block stride loop iteration | ||||||
|  |   } | ||||||
|  | } | ||||||
|  | #define ACCELERATOR_CSHIFT_NO_COPY | ||||||
|  | #ifdef ACCELERATOR_CSHIFT_NO_COPY | ||||||
|  | template<class vobj> void Cshift_comms(Lattice<vobj> &ret,const Lattice<vobj> &rhs,int dimension,int shift,int cbmask) | ||||||
|  | { | ||||||
|  |   typedef typename vobj::vector_type vector_type; | ||||||
|  |   typedef typename vobj::scalar_type scalar_type; | ||||||
|  |  | ||||||
|  |   GridBase *grid=rhs.Grid(); | ||||||
|  |   Lattice<vobj> temp(rhs.Grid()); | ||||||
|  |  | ||||||
|  |   int fd              = rhs.Grid()->_fdimensions[dimension]; | ||||||
|  |   int rd              = rhs.Grid()->_rdimensions[dimension]; | ||||||
|  |   int pd              = rhs.Grid()->_processors[dimension]; | ||||||
|  |   int simd_layout     = rhs.Grid()->_simd_layout[dimension]; | ||||||
|  |   int comm_dim        = rhs.Grid()->_processors[dimension] >1 ; | ||||||
|  |   assert(simd_layout==1); | ||||||
|  |   assert(comm_dim==1); | ||||||
|  |   assert(shift>=0); | ||||||
|  |   assert(shift<fd); | ||||||
|  |    | ||||||
|  |   int buffer_size = rhs.Grid()->_slice_nblock[dimension]*rhs.Grid()->_slice_block[dimension]; | ||||||
|  |   static cshiftVector<vobj> send_buf; send_buf.resize(buffer_size); | ||||||
|  |   static cshiftVector<vobj> recv_buf; recv_buf.resize(buffer_size); | ||||||
|  |      | ||||||
|  |   int cb= (cbmask==0x2)? Odd : Even; | ||||||
|  |   int sshift= rhs.Grid()->CheckerBoardShiftForCB(rhs.Checkerboard(),dimension,shift,cb); | ||||||
|  |  | ||||||
|  |   for(int x=0;x<rd;x++){        | ||||||
|  |  | ||||||
|  |     int sx        =  (x+sshift)%rd; | ||||||
|  |     int comm_proc = ((x+sshift)/rd)%pd; | ||||||
|  |      | ||||||
|  |     if (comm_proc==0) { | ||||||
|  |  | ||||||
|  |       Copy_plane(ret,rhs,dimension,x,sx,cbmask);  | ||||||
|  |  | ||||||
|  |     } else { | ||||||
|  |  | ||||||
|  |       int words = buffer_size; | ||||||
|  |       if (cbmask != 0x3) words=words>>1; | ||||||
|  |  | ||||||
|  |       int bytes = words * sizeof(vobj); | ||||||
|  |  | ||||||
|  |       Gather_plane_simple (rhs,send_buf,dimension,sx,cbmask); | ||||||
|  |  | ||||||
|  |       //      int rank           = grid->_processor; | ||||||
|  |       int recv_from_rank; | ||||||
|  |       int xmit_to_rank; | ||||||
|  |       grid->ShiftedRanks(dimension,comm_proc,xmit_to_rank,recv_from_rank); | ||||||
|  |  | ||||||
|  |       grid->Barrier(); | ||||||
|  |  | ||||||
|  |       grid->SendToRecvFrom((void *)&send_buf[0], | ||||||
|  | 			   xmit_to_rank, | ||||||
|  | 			   (void *)&recv_buf[0], | ||||||
|  | 			   recv_from_rank, | ||||||
|  | 			   bytes); | ||||||
|  |  | ||||||
|  |       grid->Barrier(); | ||||||
|  |  | ||||||
|  |       Scatter_plane_simple (ret,recv_buf,dimension,x,cbmask); | ||||||
|  |     } | ||||||
|  |   } | ||||||
|  | } | ||||||
|  |  | ||||||
|  | template<class vobj> void  Cshift_comms_simd(Lattice<vobj> &ret,const Lattice<vobj> &rhs,int dimension,int shift,int cbmask) | ||||||
|  | { | ||||||
|  |   GridBase *grid=rhs.Grid(); | ||||||
|  |   const int Nsimd = grid->Nsimd(); | ||||||
|  |   typedef typename vobj::vector_type vector_type; | ||||||
|  |   typedef typename vobj::scalar_object scalar_object; | ||||||
|  |   typedef typename vobj::scalar_type scalar_type; | ||||||
|  |     | ||||||
|  |   int fd = grid->_fdimensions[dimension]; | ||||||
|  |   int rd = grid->_rdimensions[dimension]; | ||||||
|  |   int ld = grid->_ldimensions[dimension]; | ||||||
|  |   int pd = grid->_processors[dimension]; | ||||||
|  |   int simd_layout     = grid->_simd_layout[dimension]; | ||||||
|  |   int comm_dim        = grid->_processors[dimension] >1 ; | ||||||
|  |  | ||||||
|  |   //std::cout << "Cshift_comms_simd dim "<< dimension << " fd "<<fd<<" rd "<<rd | ||||||
|  |   //    << " ld "<<ld<<" pd " << pd<<" simd_layout "<<simd_layout  | ||||||
|  |   //    << " comm_dim " << comm_dim << " cbmask " << cbmask <<std::endl; | ||||||
|  |  | ||||||
|  |   assert(comm_dim==1); | ||||||
|  |   assert(simd_layout==2); | ||||||
|  |   assert(shift>=0); | ||||||
|  |   assert(shift<fd); | ||||||
|  |  | ||||||
|  |   int permute_type=grid->PermuteType(dimension); | ||||||
|  |  | ||||||
|  |   /////////////////////////////////////////////// | ||||||
|  |   // Simd direction uses an extract/merge pair | ||||||
|  |   /////////////////////////////////////////////// | ||||||
|  |   int buffer_size = grid->_slice_nblock[dimension]*grid->_slice_block[dimension]; | ||||||
|  |   //  int words = sizeof(vobj)/sizeof(vector_type); | ||||||
|  |  | ||||||
|  |   static std::vector<cshiftVector<scalar_object> >  send_buf_extract; send_buf_extract.resize(Nsimd); | ||||||
|  |   static std::vector<cshiftVector<scalar_object> >  recv_buf_extract; recv_buf_extract.resize(Nsimd); | ||||||
|  |   scalar_object *  recv_buf_extract_mpi; | ||||||
|  |   scalar_object *  send_buf_extract_mpi; | ||||||
|  |   | ||||||
|  |   for(int s=0;s<Nsimd;s++){ | ||||||
|  |     send_buf_extract[s].resize(buffer_size); | ||||||
|  |     recv_buf_extract[s].resize(buffer_size); | ||||||
|  |   } | ||||||
|  |  | ||||||
|  |   int bytes = buffer_size*sizeof(scalar_object); | ||||||
|  |  | ||||||
|  |   ExtractPointerArray<scalar_object>  pointers(Nsimd); //  | ||||||
|  |   ExtractPointerArray<scalar_object> rpointers(Nsimd); // received pointers | ||||||
|  |  | ||||||
|  |   /////////////////////////////////////////// | ||||||
|  |   // Work out what to send where | ||||||
|  |   /////////////////////////////////////////// | ||||||
|  |   int cb    = (cbmask==0x2)? Odd : Even; | ||||||
|  |   int sshift= grid->CheckerBoardShiftForCB(rhs.Checkerboard(),dimension,shift,cb); | ||||||
|  |  | ||||||
|  |   // loop over outer coord planes orthog to dim | ||||||
|  |   for(int x=0;x<rd;x++){        | ||||||
|  |  | ||||||
|  |     // FIXME call local permute copy if none are offnode. | ||||||
|  |     for(int i=0;i<Nsimd;i++){        | ||||||
|  |       pointers[i] = &send_buf_extract[i][0]; | ||||||
|  |     } | ||||||
|  |     int sx   = (x+sshift)%rd; | ||||||
|  |     Gather_plane_extract(rhs,pointers,dimension,sx,cbmask); | ||||||
|  |  | ||||||
|  |     for(int i=0;i<Nsimd;i++){ | ||||||
|  |        | ||||||
|  |       int inner_bit = (Nsimd>>(permute_type+1)); | ||||||
|  |       int ic= (i&inner_bit)? 1:0; | ||||||
|  |  | ||||||
|  |       int my_coor          = rd*ic + x; | ||||||
|  |       int nbr_coor         = my_coor+sshift; | ||||||
|  |       int nbr_proc = ((nbr_coor)/ld) % pd;// relative shift in processors | ||||||
|  |  | ||||||
|  |       int nbr_ic   = (nbr_coor%ld)/rd;    // inner coord of peer | ||||||
|  |       int nbr_ox   = (nbr_coor%rd);       // outer coord of peer | ||||||
|  |       int nbr_lane = (i&(~inner_bit)); | ||||||
|  |  | ||||||
|  |       int recv_from_rank; | ||||||
|  |       int xmit_to_rank; | ||||||
|  |  | ||||||
|  |       if (nbr_ic) nbr_lane|=inner_bit; | ||||||
|  |  | ||||||
|  |       assert (sx == nbr_ox); | ||||||
|  |  | ||||||
|  |       if(nbr_proc){ | ||||||
|  | 	grid->ShiftedRanks(dimension,nbr_proc,xmit_to_rank,recv_from_rank);  | ||||||
|  |  | ||||||
|  | 	grid->Barrier(); | ||||||
|  |  | ||||||
|  | 	send_buf_extract_mpi = &send_buf_extract[nbr_lane][0]; | ||||||
|  | 	recv_buf_extract_mpi = &recv_buf_extract[i][0]; | ||||||
|  | 	grid->SendToRecvFrom((void *)send_buf_extract_mpi, | ||||||
|  | 			     xmit_to_rank, | ||||||
|  | 			     (void *)recv_buf_extract_mpi, | ||||||
|  | 			     recv_from_rank, | ||||||
|  | 			     bytes); | ||||||
|  |  | ||||||
|  | 	grid->Barrier(); | ||||||
|  |  | ||||||
|  | 	rpointers[i] = &recv_buf_extract[i][0]; | ||||||
|  |       } else {  | ||||||
|  | 	rpointers[i] = &send_buf_extract[nbr_lane][0]; | ||||||
|  |       } | ||||||
|  |  | ||||||
|  |     } | ||||||
|  |     Scatter_plane_merge(ret,rpointers,dimension,x,cbmask); | ||||||
|  |   } | ||||||
|  |  | ||||||
|  | } | ||||||
|  | #else  | ||||||
|  | template<class vobj> void Cshift_comms(Lattice<vobj> &ret,const Lattice<vobj> &rhs,int dimension,int shift,int cbmask) | ||||||
|  | { | ||||||
|  |   typedef typename vobj::vector_type vector_type; | ||||||
|  |   typedef typename vobj::scalar_type scalar_type; | ||||||
|  |  | ||||||
|  |   GridBase *grid=rhs.Grid(); | ||||||
|  |   Lattice<vobj> temp(rhs.Grid()); | ||||||
|  |  | ||||||
|  |   int fd              = rhs.Grid()->_fdimensions[dimension]; | ||||||
|  |   int rd              = rhs.Grid()->_rdimensions[dimension]; | ||||||
|  |   int pd              = rhs.Grid()->_processors[dimension]; | ||||||
|  |   int simd_layout     = rhs.Grid()->_simd_layout[dimension]; | ||||||
|  |   int comm_dim        = rhs.Grid()->_processors[dimension] >1 ; | ||||||
|  |   assert(simd_layout==1); | ||||||
|  |   assert(comm_dim==1); | ||||||
|  |   assert(shift>=0); | ||||||
|  |   assert(shift<fd); | ||||||
|  |    | ||||||
|  |   int buffer_size = rhs.Grid()->_slice_nblock[dimension]*rhs.Grid()->_slice_block[dimension]; | ||||||
|  |   static cshiftVector<vobj> send_buf_v; send_buf_v.resize(buffer_size); | ||||||
|  |   static cshiftVector<vobj> recv_buf_v; recv_buf_v.resize(buffer_size); | ||||||
|  |   vobj *send_buf; | ||||||
|  |   vobj *recv_buf; | ||||||
|  |   { | ||||||
|  |     grid->ShmBufferFreeAll(); | ||||||
|  |     size_t bytes = buffer_size*sizeof(vobj); | ||||||
|  |     send_buf=(vobj *)grid->ShmBufferMalloc(bytes); | ||||||
|  |     recv_buf=(vobj *)grid->ShmBufferMalloc(bytes); | ||||||
|  |   } | ||||||
|  |      | ||||||
|  |   int cb= (cbmask==0x2)? Odd : Even; | ||||||
|  |   int sshift= rhs.Grid()->CheckerBoardShiftForCB(rhs.Checkerboard(),dimension,shift,cb); | ||||||
|  |  | ||||||
|  |   for(int x=0;x<rd;x++){        | ||||||
|  |  | ||||||
|  |     int sx        =  (x+sshift)%rd; | ||||||
|  |     int comm_proc = ((x+sshift)/rd)%pd; | ||||||
|  |      | ||||||
|  |     if (comm_proc==0) { | ||||||
|  |  | ||||||
|  |       Copy_plane(ret,rhs,dimension,x,sx,cbmask);  | ||||||
|  |  | ||||||
|  |     } else { | ||||||
|  |  | ||||||
|  |       int words = buffer_size; | ||||||
|  |       if (cbmask != 0x3) words=words>>1; | ||||||
|  |  | ||||||
|  |       int bytes = words * sizeof(vobj); | ||||||
|  |  | ||||||
|  |       Gather_plane_simple (rhs,send_buf_v,dimension,sx,cbmask); | ||||||
|  |  | ||||||
|  |       //      int rank           = grid->_processor; | ||||||
|  |       int recv_from_rank; | ||||||
|  |       int xmit_to_rank; | ||||||
|  |       grid->ShiftedRanks(dimension,comm_proc,xmit_to_rank,recv_from_rank); | ||||||
|  |  | ||||||
|  |  | ||||||
|  |       grid->Barrier(); | ||||||
|  |  | ||||||
|  |       acceleratorCopyDeviceToDevice((void *)&send_buf_v[0],(void *)&send_buf[0],bytes); | ||||||
|  |       grid->SendToRecvFrom((void *)&send_buf[0], | ||||||
|  | 			   xmit_to_rank, | ||||||
|  | 			   (void *)&recv_buf[0], | ||||||
|  | 			   recv_from_rank, | ||||||
|  | 			   bytes); | ||||||
|  |       acceleratorCopyDeviceToDevice((void *)&recv_buf[0],(void *)&recv_buf_v[0],bytes); | ||||||
|  |  | ||||||
|  |       grid->Barrier(); | ||||||
|  |  | ||||||
|  |       Scatter_plane_simple (ret,recv_buf_v,dimension,x,cbmask); | ||||||
|  |     } | ||||||
|  |   } | ||||||
|  | } | ||||||
|  |  | ||||||
|  | template<class vobj> void  Cshift_comms_simd(Lattice<vobj> &ret,const Lattice<vobj> &rhs,int dimension,int shift,int cbmask) | ||||||
|  | { | ||||||
|  |   GridBase *grid=rhs.Grid(); | ||||||
|  |   const int Nsimd = grid->Nsimd(); | ||||||
|  |   typedef typename vobj::vector_type vector_type; | ||||||
|  |   typedef typename vobj::scalar_object scalar_object; | ||||||
|  |   typedef typename vobj::scalar_type scalar_type; | ||||||
|  |     | ||||||
|  |   int fd = grid->_fdimensions[dimension]; | ||||||
|  |   int rd = grid->_rdimensions[dimension]; | ||||||
|  |   int ld = grid->_ldimensions[dimension]; | ||||||
|  |   int pd = grid->_processors[dimension]; | ||||||
|  |   int simd_layout     = grid->_simd_layout[dimension]; | ||||||
|  |   int comm_dim        = grid->_processors[dimension] >1 ; | ||||||
|  |  | ||||||
|  |   //std::cout << "Cshift_comms_simd dim "<< dimension << " fd "<<fd<<" rd "<<rd | ||||||
|  |   //    << " ld "<<ld<<" pd " << pd<<" simd_layout "<<simd_layout  | ||||||
|  |   //    << " comm_dim " << comm_dim << " cbmask " << cbmask <<std::endl; | ||||||
|  |  | ||||||
|  |   assert(comm_dim==1); | ||||||
|  |   assert(simd_layout==2); | ||||||
|  |   assert(shift>=0); | ||||||
|  |   assert(shift<fd); | ||||||
|  |  | ||||||
|  |   int permute_type=grid->PermuteType(dimension); | ||||||
|  |  | ||||||
|  |   /////////////////////////////////////////////// | ||||||
|  |   // Simd direction uses an extract/merge pair | ||||||
|  |   /////////////////////////////////////////////// | ||||||
|  |   int buffer_size = grid->_slice_nblock[dimension]*grid->_slice_block[dimension]; | ||||||
|  |   //  int words = sizeof(vobj)/sizeof(vector_type); | ||||||
|  |  | ||||||
|  |   static std::vector<cshiftVector<scalar_object> >  send_buf_extract; send_buf_extract.resize(Nsimd); | ||||||
|  |   static std::vector<cshiftVector<scalar_object> >  recv_buf_extract; recv_buf_extract.resize(Nsimd); | ||||||
|  |   scalar_object *  recv_buf_extract_mpi; | ||||||
|  |   scalar_object *  send_buf_extract_mpi; | ||||||
|  |   { | ||||||
|  |     size_t bytes = sizeof(scalar_object)*buffer_size; | ||||||
|  |     grid->ShmBufferFreeAll(); | ||||||
|  |     send_buf_extract_mpi = (scalar_object *)grid->ShmBufferMalloc(bytes); | ||||||
|  |     recv_buf_extract_mpi = (scalar_object *)grid->ShmBufferMalloc(bytes); | ||||||
|  |   } | ||||||
|  |   for(int s=0;s<Nsimd;s++){ | ||||||
|  |     send_buf_extract[s].resize(buffer_size); | ||||||
|  |     recv_buf_extract[s].resize(buffer_size); | ||||||
|  |   } | ||||||
|  |  | ||||||
|  |   int bytes = buffer_size*sizeof(scalar_object); | ||||||
|  |  | ||||||
|  |   ExtractPointerArray<scalar_object>  pointers(Nsimd); //  | ||||||
|  |   ExtractPointerArray<scalar_object> rpointers(Nsimd); // received pointers | ||||||
|  |  | ||||||
|  |   /////////////////////////////////////////// | ||||||
|  |   // Work out what to send where | ||||||
|  |   /////////////////////////////////////////// | ||||||
|  |   int cb    = (cbmask==0x2)? Odd : Even; | ||||||
|  |   int sshift= grid->CheckerBoardShiftForCB(rhs.Checkerboard(),dimension,shift,cb); | ||||||
|  |  | ||||||
|  |   // loop over outer coord planes orthog to dim | ||||||
|  |   for(int x=0;x<rd;x++){        | ||||||
|  |  | ||||||
|  |     // FIXME call local permute copy if none are offnode. | ||||||
|  |     for(int i=0;i<Nsimd;i++){        | ||||||
|  |       pointers[i] = &send_buf_extract[i][0]; | ||||||
|  |     } | ||||||
|  |     int sx   = (x+sshift)%rd; | ||||||
|  |     Gather_plane_extract(rhs,pointers,dimension,sx,cbmask); | ||||||
|  |  | ||||||
|  |     for(int i=0;i<Nsimd;i++){ | ||||||
|  |        | ||||||
|  |       int inner_bit = (Nsimd>>(permute_type+1)); | ||||||
|  |       int ic= (i&inner_bit)? 1:0; | ||||||
|  |  | ||||||
|  |       int my_coor          = rd*ic + x; | ||||||
|  |       int nbr_coor         = my_coor+sshift; | ||||||
|  |       int nbr_proc = ((nbr_coor)/ld) % pd;// relative shift in processors | ||||||
|  |  | ||||||
|  |       int nbr_ic   = (nbr_coor%ld)/rd;    // inner coord of peer | ||||||
|  |       int nbr_ox   = (nbr_coor%rd);       // outer coord of peer | ||||||
|  |       int nbr_lane = (i&(~inner_bit)); | ||||||
|  |  | ||||||
|  |       int recv_from_rank; | ||||||
|  |       int xmit_to_rank; | ||||||
|  |  | ||||||
|  |       if (nbr_ic) nbr_lane|=inner_bit; | ||||||
|  |  | ||||||
|  |       assert (sx == nbr_ox); | ||||||
|  |  | ||||||
|  |       if(nbr_proc){ | ||||||
|  | 	grid->ShiftedRanks(dimension,nbr_proc,xmit_to_rank,recv_from_rank);  | ||||||
|  |  | ||||||
|  | 	grid->Barrier(); | ||||||
|  |  | ||||||
|  | 	acceleratorCopyDeviceToDevice((void *)&send_buf_extract[nbr_lane][0],(void *)send_buf_extract_mpi,bytes); | ||||||
|  | 	grid->SendToRecvFrom((void *)send_buf_extract_mpi, | ||||||
|  | 			     xmit_to_rank, | ||||||
|  | 			     (void *)recv_buf_extract_mpi, | ||||||
|  | 			     recv_from_rank, | ||||||
|  | 			     bytes); | ||||||
|  | 	acceleratorCopyDeviceToDevice((void *)recv_buf_extract_mpi,(void *)&recv_buf_extract[i][0],bytes); | ||||||
|  |  | ||||||
|  | 	grid->Barrier(); | ||||||
|  | 	rpointers[i] = &recv_buf_extract[i][0]; | ||||||
|  |       } else {  | ||||||
|  | 	rpointers[i] = &send_buf_extract[nbr_lane][0]; | ||||||
|  |       } | ||||||
|  |  | ||||||
|  |     } | ||||||
|  |     Scatter_plane_merge(ret,rpointers,dimension,x,cbmask); | ||||||
|  |   } | ||||||
|  |  | ||||||
|  | } | ||||||
|  | #endif | ||||||
|  | NAMESPACE_END(Grid);  | ||||||
|  |  | ||||||
|  | #endif | ||||||
| @@ -1,4 +1,4 @@ | |||||||
|     /*************************************************************************************
 | /*************************************************************************************
 | ||||||
| 
 | 
 | ||||||
|     Grid physics library, www.github.com/paboyle/Grid  |     Grid physics library, www.github.com/paboyle/Grid  | ||||||
| 
 | 
 | ||||||
| @@ -23,17 +23,18 @@ Author: Peter Boyle <paboyle@ph.ed.ac.uk> | |||||||
|     51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. |     51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. | ||||||
| 
 | 
 | ||||||
|     See the full license in the file "LICENSE" in the top level distribution directory |     See the full license in the file "LICENSE" in the top level distribution directory | ||||||
|     *************************************************************************************/ | *************************************************************************************/ | ||||||
|     /*  END LEGAL */ | /*  END LEGAL */ | ||||||
| #ifndef _GRID_CSHIFT_NONE_H_ | #ifndef _GRID_CSHIFT_NONE_H_ | ||||||
| #define _GRID_CSHIFT_NONE_H_ | #define _GRID_CSHIFT_NONE_H_ | ||||||
| namespace Grid { | NAMESPACE_BEGIN(Grid); | ||||||
| template<class vobj> Lattice<vobj> Cshift(const Lattice<vobj> &rhs,int dimension,int shift) | template<class vobj> Lattice<vobj> Cshift(const Lattice<vobj> &rhs,int dimension,int shift) | ||||||
| { | { | ||||||
|   Lattice<vobj> ret(rhs._grid); |   Lattice<vobj> ret(rhs.Grid()); | ||||||
|   ret.checkerboard = rhs._grid->CheckerBoardDestination(rhs.checkerboard,shift,dimension); |   ret.Checkerboard() = rhs.Grid()->CheckerBoardDestination(rhs.Checkerboard(),shift,dimension); | ||||||
|   Cshift_local(ret,rhs,dimension,shift); |   Cshift_local(ret,rhs,dimension,shift); | ||||||
|   return ret; |   return ret; | ||||||
| } | } | ||||||
| } | NAMESPACE_END(Grid); | ||||||
|  | 
 | ||||||
| #endif | #endif | ||||||
							
								
								
									
										4
									
								
								Grid/cshift/Cshift_table.cc
									
									
									
									
									
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										4
									
								
								Grid/cshift/Cshift_table.cc
									
									
									
									
									
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							| @@ -0,0 +1,4 @@ | |||||||
|  | #include <Grid/GridCore.h>        | ||||||
|  | NAMESPACE_BEGIN(Grid); | ||||||
|  | Vector<std::pair<int,int> > Cshift_table;  | ||||||
|  | NAMESPACE_END(Grid); | ||||||
							
								
								
									
										18922
									
								
								Grid/json/json.hpp
									
									
									
									
									
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										18922
									
								
								Grid/json/json.hpp
									
									
									
									
									
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												File diff suppressed because it is too large
												Load Diff
											
										
									
								
							
							
								
								
									
										48
									
								
								Grid/lattice/Lattice.h
									
									
									
									
									
										Normal file
									
								
							
							
						
						
									
										48
									
								
								Grid/lattice/Lattice.h
									
									
									
									
									
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							| @@ -0,0 +1,48 @@ | |||||||
|  |     /************************************************************************************* | ||||||
|  |  | ||||||
|  |     Grid physics library, www.github.com/paboyle/Grid  | ||||||
|  |  | ||||||
|  |     Source file: ./lib/Lattice.h | ||||||
|  |  | ||||||
|  |     Copyright (C) 2015 | ||||||
|  |  | ||||||
|  | Author: Peter Boyle <paboyle@ph.ed.ac.uk> | ||||||
|  |  | ||||||
|  |     This program is free software; you can redistribute it and/or modify | ||||||
|  |     it under the terms of the GNU General Public License as published by | ||||||
|  |     the Free Software Foundation; either version 2 of the License, or | ||||||
|  |     (at your option) any later version. | ||||||
|  |  | ||||||
|  |     This program is distributed in the hope that it will be useful, | ||||||
|  |     but WITHOUT ANY WARRANTY; without even the implied warranty of | ||||||
|  |     MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the | ||||||
|  |     GNU General Public License for more details. | ||||||
|  |  | ||||||
|  |     You should have received a copy of the GNU General Public License along | ||||||
|  |     with this program; if not, write to the Free Software Foundation, Inc., | ||||||
|  |     51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. | ||||||
|  |  | ||||||
|  |     See the full license in the file "LICENSE" in the top level distribution directory | ||||||
|  |     *************************************************************************************/ | ||||||
|  |     /*  END LEGAL */ | ||||||
|  | #pragma once | ||||||
|  | #include <Grid/lattice/Lattice_view.h> | ||||||
|  | #include <Grid/lattice/Lattice_base.h> | ||||||
|  | #include <Grid/lattice/Lattice_conformable.h> | ||||||
|  | #include <Grid/lattice/Lattice_ET.h> | ||||||
|  | #include <Grid/lattice/Lattice_arith.h> | ||||||
|  | #include <Grid/lattice/Lattice_trace.h> | ||||||
|  | #include <Grid/lattice/Lattice_transpose.h> | ||||||
|  | #include <Grid/lattice/Lattice_local.h> | ||||||
|  | #include <Grid/lattice/Lattice_reduction.h> | ||||||
|  | #include <Grid/lattice/Lattice_peekpoke.h> | ||||||
|  | #include <Grid/lattice/Lattice_reality.h> | ||||||
|  | #include <Grid/lattice/Lattice_real_imag.h> | ||||||
|  | #include <Grid/lattice/Lattice_comparison_utils.h> | ||||||
|  | #include <Grid/lattice/Lattice_comparison.h> | ||||||
|  | #include <Grid/lattice/Lattice_coordinate.h> | ||||||
|  | //#include <Grid/lattice/Lattice_where.h> | ||||||
|  | #include <Grid/lattice/Lattice_rng.h> | ||||||
|  | #include <Grid/lattice/Lattice_unary.h> | ||||||
|  | #include <Grid/lattice/Lattice_transfer.h> | ||||||
|  | #include <Grid/lattice/Lattice_basis.h> | ||||||
							
								
								
									
										530
									
								
								Grid/lattice/Lattice_ET.h
									
									
									
									
									
										Normal file
									
								
							
							
						
						
									
										530
									
								
								Grid/lattice/Lattice_ET.h
									
									
									
									
									
										Normal file
									
								
							| @@ -0,0 +1,530 @@ | |||||||
|  | /************************************************************************************* | ||||||
|  |  | ||||||
|  | Grid physics library, www.github.com/paboyle/Grid | ||||||
|  |  | ||||||
|  | Source file: ./lib/lattice/Lattice_ET.h | ||||||
|  |  | ||||||
|  | Copyright (C) 2015 | ||||||
|  |  | ||||||
|  | Author: Azusa Yamaguchi <ayamaguc@staffmail.ed.ac.uk> | ||||||
|  | Author: Peter Boyle <paboyle@ph.ed.ac.uk> | ||||||
|  | Author: neo <cossu@post.kek.jp> | ||||||
|  | Author: Christoph Lehner <christoph@lhnr.de | ||||||
|  |  | ||||||
|  | This program is free software; you can redistribute it and/or modify | ||||||
|  | it under the terms of the GNU General Public License as published by | ||||||
|  | the Free Software Foundation; either version 2 of the License, or | ||||||
|  | (at your option) any later version. | ||||||
|  |  | ||||||
|  | This program is distributed in the hope that it will be useful, | ||||||
|  | but WITHOUT ANY WARRANTY; without even the implied warranty of | ||||||
|  | MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the | ||||||
|  | GNU General Public License for more details. | ||||||
|  |  | ||||||
|  | You should have received a copy of the GNU General Public License along | ||||||
|  | with this program; if not, write to the Free Software Foundation, Inc., | ||||||
|  | 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. | ||||||
|  |  | ||||||
|  | See the full license in the file "LICENSE" in the top level distribution | ||||||
|  | directory | ||||||
|  | *************************************************************************************/ | ||||||
|  | 			   /*  END LEGAL */ | ||||||
|  | #ifndef GRID_LATTICE_ET_H | ||||||
|  | #define GRID_LATTICE_ET_H | ||||||
|  |  | ||||||
|  | #include <iostream> | ||||||
|  | #include <tuple> | ||||||
|  | #include <typeinfo> | ||||||
|  | #include <vector> | ||||||
|  |  | ||||||
|  | NAMESPACE_BEGIN(Grid); | ||||||
|  |  | ||||||
|  | //////////////////////////////////////////////////// | ||||||
|  | // Predicated where support | ||||||
|  | //////////////////////////////////////////////////// | ||||||
|  | #ifdef GRID_SIMT | ||||||
|  | // drop to scalar in SIMT; cleaner in fact | ||||||
|  | template <class iobj, class vobj, class robj> | ||||||
|  | accelerator_inline vobj predicatedWhere(const iobj &predicate,  | ||||||
|  | 					const vobj &iftrue,  | ||||||
|  | 					const robj &iffalse)  | ||||||
|  | { | ||||||
|  |   Integer mask = TensorRemove(predicate); | ||||||
|  |   typename std::remove_const<vobj>::type ret= iffalse; | ||||||
|  |   if (mask) ret=iftrue; | ||||||
|  |   return ret; | ||||||
|  | } | ||||||
|  | #else | ||||||
|  | template <class iobj, class vobj, class robj> | ||||||
|  | accelerator_inline vobj predicatedWhere(const iobj &predicate,  | ||||||
|  | 					const vobj &iftrue,  | ||||||
|  | 					const robj &iffalse)  | ||||||
|  | { | ||||||
|  |   typename std::remove_const<vobj>::type ret; | ||||||
|  |  | ||||||
|  |   typedef typename vobj::scalar_object scalar_object; | ||||||
|  |   typedef typename vobj::scalar_type scalar_type; | ||||||
|  |   typedef typename vobj::vector_type vector_type; | ||||||
|  |  | ||||||
|  |   const int Nsimd = vobj::vector_type::Nsimd(); | ||||||
|  |  | ||||||
|  |   ExtractBuffer<Integer> mask(Nsimd); | ||||||
|  |   ExtractBuffer<scalar_object> truevals(Nsimd); | ||||||
|  |   ExtractBuffer<scalar_object> falsevals(Nsimd); | ||||||
|  |  | ||||||
|  |   extract(iftrue, truevals); | ||||||
|  |   extract(iffalse, falsevals); | ||||||
|  |   extract<vInteger, Integer>(TensorRemove(predicate), mask); | ||||||
|  |  | ||||||
|  |   for (int s = 0; s < Nsimd; s++) { | ||||||
|  |     if (mask[s]) falsevals[s] = truevals[s]; | ||||||
|  |   } | ||||||
|  |  | ||||||
|  |   merge(ret, falsevals); | ||||||
|  |   return ret; | ||||||
|  | } | ||||||
|  | #endif | ||||||
|  |  | ||||||
|  | ///////////////////////////////////////////////////// | ||||||
|  | //Specialization of getVectorType for lattices | ||||||
|  | ///////////////////////////////////////////////////// | ||||||
|  | template<typename T> | ||||||
|  | struct getVectorType<Lattice<T> >{ | ||||||
|  |   typedef typename Lattice<T>::vector_object type; | ||||||
|  | }; | ||||||
|  |  | ||||||
|  | //////////////////////////////////////////// | ||||||
|  | //--  recursive evaluation of expressions; -- | ||||||
|  | // handle leaves of syntax tree | ||||||
|  | /////////////////////////////////////////////////// | ||||||
|  | template<class sobj, | ||||||
|  |   typename std::enable_if<!is_lattice<sobj>::value&&!is_lattice_expr<sobj>::value,sobj>::type * = nullptr>  | ||||||
|  | accelerator_inline  | ||||||
|  | sobj eval(const uint64_t ss, const sobj &arg) | ||||||
|  | { | ||||||
|  |   return arg; | ||||||
|  | } | ||||||
|  | template <class lobj> accelerator_inline  | ||||||
|  | auto eval(const uint64_t ss, const LatticeView<lobj> &arg) -> decltype(arg(ss)) | ||||||
|  | { | ||||||
|  |   return arg(ss); | ||||||
|  | } | ||||||
|  |  | ||||||
|  | //////////////////////////////////////////// | ||||||
|  | //--  recursive evaluation of expressions; -- | ||||||
|  | // whole vector return, used only for expression return type inference | ||||||
|  | /////////////////////////////////////////////////// | ||||||
|  | template<class sobj> accelerator_inline  | ||||||
|  | sobj vecEval(const uint64_t ss, const sobj &arg) | ||||||
|  | { | ||||||
|  |   return arg; | ||||||
|  | } | ||||||
|  | template <class lobj> accelerator_inline  | ||||||
|  | const lobj & vecEval(const uint64_t ss, const LatticeView<lobj> &arg)  | ||||||
|  | { | ||||||
|  |   return arg[ss]; | ||||||
|  | } | ||||||
|  |  | ||||||
|  | /////////////////////////////////////////////////// | ||||||
|  | // handle nodes in syntax tree- eval one operand | ||||||
|  | // vecEval needed (but never called as all expressions offloaded) to infer the return type | ||||||
|  | // in SIMT contexts of closure. | ||||||
|  | /////////////////////////////////////////////////// | ||||||
|  | template <typename Op, typename T1> accelerator_inline  | ||||||
|  | auto vecEval(const uint64_t ss, const LatticeUnaryExpression<Op, T1> &expr)   | ||||||
|  |   -> decltype(expr.op.func( vecEval(ss, expr.arg1))) | ||||||
|  | { | ||||||
|  |   return expr.op.func( vecEval(ss, expr.arg1) ); | ||||||
|  | } | ||||||
|  | // vecEval two operands | ||||||
|  | template <typename Op, typename T1, typename T2> accelerator_inline | ||||||
|  | auto vecEval(const uint64_t ss, const LatticeBinaryExpression<Op, T1, T2> &expr)   | ||||||
|  |   -> decltype(expr.op.func( vecEval(ss,expr.arg1),vecEval(ss,expr.arg2))) | ||||||
|  | { | ||||||
|  |   return expr.op.func( vecEval(ss,expr.arg1), vecEval(ss,expr.arg2) ); | ||||||
|  | } | ||||||
|  | // vecEval three operands | ||||||
|  | template <typename Op, typename T1, typename T2, typename T3> accelerator_inline | ||||||
|  | auto vecEval(const uint64_t ss, const LatticeTrinaryExpression<Op, T1, T2, T3> &expr)   | ||||||
|  |   -> decltype(expr.op.func(vecEval(ss, expr.arg1), vecEval(ss, expr.arg2), vecEval(ss, expr.arg3))) | ||||||
|  | { | ||||||
|  |   return expr.op.func(vecEval(ss, expr.arg1), vecEval(ss, expr.arg2), vecEval(ss, expr.arg3)); | ||||||
|  | } | ||||||
|  |  | ||||||
|  | /////////////////////////////////////////////////// | ||||||
|  | // handle nodes in syntax tree- eval one operand coalesced | ||||||
|  | /////////////////////////////////////////////////// | ||||||
|  | template <typename Op, typename T1> accelerator_inline  | ||||||
|  | auto eval(const uint64_t ss, const LatticeUnaryExpression<Op, T1> &expr)   | ||||||
|  |   -> decltype(expr.op.func( eval(ss, expr.arg1))) | ||||||
|  | { | ||||||
|  |   return expr.op.func( eval(ss, expr.arg1) ); | ||||||
|  | } | ||||||
|  | // eval two operands | ||||||
|  | template <typename Op, typename T1, typename T2> accelerator_inline | ||||||
|  | auto eval(const uint64_t ss, const LatticeBinaryExpression<Op, T1, T2> &expr)   | ||||||
|  |   -> decltype(expr.op.func( eval(ss,expr.arg1),eval(ss,expr.arg2))) | ||||||
|  | { | ||||||
|  |   return expr.op.func( eval(ss,expr.arg1), eval(ss,expr.arg2) ); | ||||||
|  | } | ||||||
|  | // eval three operands | ||||||
|  | template <typename Op, typename T1, typename T2, typename T3> accelerator_inline | ||||||
|  | auto eval(const uint64_t ss, const LatticeTrinaryExpression<Op, T1, T2, T3> &expr)   | ||||||
|  |   -> decltype(expr.op.func(eval(ss, expr.arg1),  | ||||||
|  | 			   eval(ss, expr.arg2),  | ||||||
|  | 			   eval(ss, expr.arg3))) | ||||||
|  | { | ||||||
|  | #ifdef GRID_SIMT | ||||||
|  |   // Handles Nsimd (vInteger) != Nsimd(ComplexD) | ||||||
|  |   typedef decltype(vecEval(ss, expr.arg2)) rvobj; | ||||||
|  |   typedef typename std::remove_reference<rvobj>::type vobj; | ||||||
|  |  | ||||||
|  |   const int Nsimd = vobj::vector_type::Nsimd(); | ||||||
|  |  | ||||||
|  |   auto vpred = vecEval(ss,expr.arg1); | ||||||
|  |  | ||||||
|  |   ExtractBuffer<Integer> mask(Nsimd); | ||||||
|  |   extract<vInteger, Integer>(TensorRemove(vpred), mask); | ||||||
|  |  | ||||||
|  |   int s = acceleratorSIMTlane(Nsimd); | ||||||
|  |   return expr.op.func(mask[s], | ||||||
|  | 		      eval(ss, expr.arg2),  | ||||||
|  | 		      eval(ss, expr.arg3)); | ||||||
|  | #else | ||||||
|  |   return expr.op.func(eval(ss, expr.arg1), | ||||||
|  | 		      eval(ss, expr.arg2),  | ||||||
|  | 		      eval(ss, expr.arg3)); | ||||||
|  | #endif | ||||||
|  | } | ||||||
|  |  | ||||||
|  | ////////////////////////////////////////////////////////////////////////// | ||||||
|  | // Obtain the grid from an expression, ensuring conformable. This must follow a | ||||||
|  | // tree recursion; must retain grid pointer in the LatticeView class which sucks | ||||||
|  | // Use a different method, and make it void *. | ||||||
|  | // Perhaps a conformable method. | ||||||
|  | ////////////////////////////////////////////////////////////////////////// | ||||||
|  | template <class T1,typename std::enable_if<is_lattice<T1>::value, T1>::type * = nullptr> | ||||||
|  | accelerator_inline void GridFromExpression(GridBase *&grid, const T1 &lat)  // Lattice leaf | ||||||
|  | { | ||||||
|  |   lat.Conformable(grid); | ||||||
|  | } | ||||||
|  |  | ||||||
|  | template <class T1,typename std::enable_if<!is_lattice<T1>::value, T1>::type * = nullptr> | ||||||
|  | accelerator_inline  | ||||||
|  | void GridFromExpression(GridBase *&grid,const T1 ¬lat)  // non-lattice leaf | ||||||
|  | {} | ||||||
|  |  | ||||||
|  | template <typename Op, typename T1> | ||||||
|  | accelerator_inline  | ||||||
|  | void GridFromExpression(GridBase *&grid,const LatticeUnaryExpression<Op, T1> &expr)  | ||||||
|  | { | ||||||
|  |   GridFromExpression(grid, expr.arg1);  // recurse | ||||||
|  | } | ||||||
|  |  | ||||||
|  | template <typename Op, typename T1, typename T2> | ||||||
|  | accelerator_inline  | ||||||
|  | void GridFromExpression(GridBase *&grid, const LatticeBinaryExpression<Op, T1, T2> &expr)  | ||||||
|  | { | ||||||
|  |   GridFromExpression(grid, expr.arg1);  // recurse | ||||||
|  |   GridFromExpression(grid, expr.arg2); | ||||||
|  | } | ||||||
|  | template <typename Op, typename T1, typename T2, typename T3> | ||||||
|  | accelerator_inline  | ||||||
|  | void GridFromExpression(GridBase *&grid, const LatticeTrinaryExpression<Op, T1, T2, T3> &expr)  | ||||||
|  | { | ||||||
|  |   GridFromExpression(grid, expr.arg1);  // recurse | ||||||
|  |   GridFromExpression(grid, expr.arg2);  // recurse | ||||||
|  |   GridFromExpression(grid, expr.arg3);  // recurse | ||||||
|  | } | ||||||
|  |  | ||||||
|  | ////////////////////////////////////////////////////////////////////////// | ||||||
|  | // Obtain the CB from an expression, ensuring conformable. This must follow a | ||||||
|  | // tree recursion | ||||||
|  | ////////////////////////////////////////////////////////////////////////// | ||||||
|  | template <class T1,typename std::enable_if<is_lattice<T1>::value, T1>::type * = nullptr> | ||||||
|  | inline void CBFromExpression(int &cb, const T1 &lat)  // Lattice leaf | ||||||
|  | { | ||||||
|  |   if ((cb == Odd) || (cb == Even)) { | ||||||
|  |     assert(cb == lat.Checkerboard()); | ||||||
|  |   } | ||||||
|  |   cb = lat.Checkerboard(); | ||||||
|  | } | ||||||
|  | template <class T1,typename std::enable_if<!is_lattice<T1>::value, T1>::type * = nullptr> | ||||||
|  | inline void CBFromExpression(int &cb, const T1 ¬lat) {} // non-lattice leaf | ||||||
|  | template <typename Op, typename T1> inline  | ||||||
|  | void CBFromExpression(int &cb,const LatticeUnaryExpression<Op, T1> &expr)  | ||||||
|  | { | ||||||
|  |   CBFromExpression(cb, expr.arg1);  // recurse AST | ||||||
|  | } | ||||||
|  | template <typename Op, typename T1, typename T2> inline  | ||||||
|  | void CBFromExpression(int &cb,const LatticeBinaryExpression<Op, T1, T2> &expr)  | ||||||
|  | { | ||||||
|  |   CBFromExpression(cb, expr.arg1);  // recurse AST | ||||||
|  |   CBFromExpression(cb, expr.arg2);  // recurse AST | ||||||
|  | } | ||||||
|  | template <typename Op, typename T1, typename T2, typename T3> | ||||||
|  | inline void CBFromExpression(int &cb, const LatticeTrinaryExpression<Op, T1, T2, T3> &expr)  | ||||||
|  | { | ||||||
|  |   CBFromExpression(cb, expr.arg1);  // recurse AST | ||||||
|  |   CBFromExpression(cb, expr.arg2);  // recurse AST | ||||||
|  |   CBFromExpression(cb, expr.arg3);  // recurse AST | ||||||
|  | } | ||||||
|  |  | ||||||
|  |  | ||||||
|  | ////////////////////////////////////////////////////////////////////////// | ||||||
|  | // ViewOpen | ||||||
|  | ////////////////////////////////////////////////////////////////////////// | ||||||
|  | template <class T1,typename std::enable_if<is_lattice<T1>::value, T1>::type * = nullptr> | ||||||
|  | inline void ExpressionViewOpen(T1 &lat)  // Lattice leaf | ||||||
|  | { | ||||||
|  |   lat.ViewOpen(AcceleratorRead); | ||||||
|  | } | ||||||
|  | template <class T1,typename std::enable_if<!is_lattice<T1>::value, T1>::type * = nullptr> | ||||||
|  |   inline void ExpressionViewOpen(T1 ¬lat) {} | ||||||
|  |  | ||||||
|  | template <typename Op, typename T1> inline  | ||||||
|  | void ExpressionViewOpen(LatticeUnaryExpression<Op, T1> &expr)  | ||||||
|  | {   | ||||||
|  |   ExpressionViewOpen(expr.arg1); // recurse AST | ||||||
|  | } | ||||||
|  |  | ||||||
|  | template <typename Op, typename T1, typename T2> inline  | ||||||
|  | void ExpressionViewOpen(LatticeBinaryExpression<Op, T1, T2> &expr)  | ||||||
|  | { | ||||||
|  |   ExpressionViewOpen(expr.arg1);  // recurse AST | ||||||
|  |   ExpressionViewOpen(expr.arg2);  // rrecurse AST | ||||||
|  | } | ||||||
|  | template <typename Op, typename T1, typename T2, typename T3> | ||||||
|  | inline void ExpressionViewOpen(LatticeTrinaryExpression<Op, T1, T2, T3> &expr)  | ||||||
|  | { | ||||||
|  |   ExpressionViewOpen(expr.arg1);  // recurse AST | ||||||
|  |   ExpressionViewOpen(expr.arg2);  // recurse AST | ||||||
|  |   ExpressionViewOpen(expr.arg3);  // recurse AST | ||||||
|  | } | ||||||
|  |  | ||||||
|  | ////////////////////////////////////////////////////////////////////////// | ||||||
|  | // ViewClose | ||||||
|  | ////////////////////////////////////////////////////////////////////////// | ||||||
|  | template <class T1,typename std::enable_if<is_lattice<T1>::value, T1>::type * = nullptr> | ||||||
|  | inline void ExpressionViewClose( T1 &lat)  // Lattice leaf | ||||||
|  | { | ||||||
|  |   lat.ViewClose(); | ||||||
|  | } | ||||||
|  | template <class T1,typename std::enable_if<!is_lattice<T1>::value, T1>::type * = nullptr> | ||||||
|  | inline void ExpressionViewClose(T1 ¬lat) {} | ||||||
|  |  | ||||||
|  | template <typename Op, typename T1> inline  | ||||||
|  | void ExpressionViewClose(LatticeUnaryExpression<Op, T1> &expr)  | ||||||
|  | {   | ||||||
|  |   ExpressionViewClose(expr.arg1); // recurse AST | ||||||
|  | } | ||||||
|  | template <typename Op, typename T1, typename T2> inline  | ||||||
|  | void ExpressionViewClose(LatticeBinaryExpression<Op, T1, T2> &expr)  | ||||||
|  | { | ||||||
|  |   ExpressionViewClose(expr.arg1);  // recurse AST | ||||||
|  |   ExpressionViewClose(expr.arg2);  // recurse AST | ||||||
|  | } | ||||||
|  | template <typename Op, typename T1, typename T2, typename T3> | ||||||
|  | inline void ExpressionViewClose(LatticeTrinaryExpression<Op, T1, T2, T3> &expr)  | ||||||
|  | { | ||||||
|  |   ExpressionViewClose(expr.arg1);  // recurse AST | ||||||
|  |   ExpressionViewClose(expr.arg2);  // recurse AST | ||||||
|  |   ExpressionViewClose(expr.arg3);  // recurse AST | ||||||
|  | } | ||||||
|  |  | ||||||
|  | //////////////////////////////////////////// | ||||||
|  | // Unary operators and funcs | ||||||
|  | //////////////////////////////////////////// | ||||||
|  | #define GridUnopClass(name, ret)					\ | ||||||
|  |   struct name {								\ | ||||||
|  |     template<class _arg> static auto accelerator_inline func(const _arg a) -> decltype(ret) { return ret; } \ | ||||||
|  |   }; | ||||||
|  |  | ||||||
|  | GridUnopClass(UnarySub, -a); | ||||||
|  | GridUnopClass(UnaryNot, Not(a)); | ||||||
|  | GridUnopClass(UnaryTrace, trace(a)); | ||||||
|  | GridUnopClass(UnaryTranspose, transpose(a)); | ||||||
|  | GridUnopClass(UnaryTa, Ta(a)); | ||||||
|  | GridUnopClass(UnaryProjectOnGroup, ProjectOnGroup(a)); | ||||||
|  | GridUnopClass(UnaryTimesI, timesI(a)); | ||||||
|  | GridUnopClass(UnaryTimesMinusI, timesMinusI(a)); | ||||||
|  | GridUnopClass(UnaryAbs, abs(a)); | ||||||
|  | GridUnopClass(UnarySqrt, sqrt(a)); | ||||||
|  | GridUnopClass(UnarySin, sin(a)); | ||||||
|  | GridUnopClass(UnaryCos, cos(a)); | ||||||
|  | GridUnopClass(UnaryAsin, asin(a)); | ||||||
|  | GridUnopClass(UnaryAcos, acos(a)); | ||||||
|  | GridUnopClass(UnaryLog, log(a)); | ||||||
|  | GridUnopClass(UnaryExp, exp(a)); | ||||||
|  |  | ||||||
|  | //////////////////////////////////////////// | ||||||
|  | // Binary operators | ||||||
|  | //////////////////////////////////////////// | ||||||
|  | #define GridBinOpClass(name, combination)			\ | ||||||
|  |   struct name {							\ | ||||||
|  |     template <class _left, class _right>			\ | ||||||
|  |     static auto accelerator_inline				\ | ||||||
|  |     func(const _left &lhs, const _right &rhs)			\ | ||||||
|  |       -> decltype(combination) const				\ | ||||||
|  |     {								\ | ||||||
|  |       return combination;					\ | ||||||
|  |     }								\ | ||||||
|  |   }; | ||||||
|  |  | ||||||
|  | GridBinOpClass(BinaryAdd, lhs + rhs); | ||||||
|  | GridBinOpClass(BinarySub, lhs - rhs); | ||||||
|  | GridBinOpClass(BinaryMul, lhs *rhs); | ||||||
|  | GridBinOpClass(BinaryDiv, lhs /rhs); | ||||||
|  | GridBinOpClass(BinaryAnd, lhs &rhs); | ||||||
|  | GridBinOpClass(BinaryOr, lhs | rhs); | ||||||
|  | GridBinOpClass(BinaryAndAnd, lhs &&rhs); | ||||||
|  | GridBinOpClass(BinaryOrOr, lhs || rhs); | ||||||
|  |  | ||||||
|  | //////////////////////////////////////////////////// | ||||||
|  | // Trinary conditional op | ||||||
|  | //////////////////////////////////////////////////// | ||||||
|  | #define GridTrinOpClass(name, combination)				\ | ||||||
|  |   struct name {								\ | ||||||
|  |     template <class _predicate,class _left, class _right>		\ | ||||||
|  |     static auto accelerator_inline					\ | ||||||
|  |     func(const _predicate &pred, const _left &lhs, const _right &rhs)	\ | ||||||
|  |       -> decltype(combination) const					\ | ||||||
|  |     {									\ | ||||||
|  |       return combination;						\ | ||||||
|  |     }									\ | ||||||
|  |   }; | ||||||
|  |  | ||||||
|  | GridTrinOpClass(TrinaryWhere, | ||||||
|  | 		(predicatedWhere< | ||||||
|  | 		 typename std::remove_reference<_predicate>::type,  | ||||||
|  | 		 typename std::remove_reference<_left>::type, | ||||||
|  | 		 typename std::remove_reference<_right>::type>(pred, lhs,rhs))); | ||||||
|  |  | ||||||
|  | //////////////////////////////////////////// | ||||||
|  | // Operator syntactical glue | ||||||
|  | //////////////////////////////////////////// | ||||||
|  | #define GRID_UNOP(name)   name | ||||||
|  | #define GRID_BINOP(name)  name | ||||||
|  | #define GRID_TRINOP(name) name | ||||||
|  |  | ||||||
|  | #define GRID_DEF_UNOP(op, name)						\ | ||||||
|  |   template <typename T1, typename std::enable_if<is_lattice<T1>::value||is_lattice_expr<T1>::value,T1>::type * = nullptr> \ | ||||||
|  |   inline auto op(const T1 &arg) ->decltype(LatticeUnaryExpression<GRID_UNOP(name),T1>(GRID_UNOP(name)(), arg)) \ | ||||||
|  |   {									\ | ||||||
|  |     return     LatticeUnaryExpression<GRID_UNOP(name),T1>(GRID_UNOP(name)(), arg); \ | ||||||
|  |   } | ||||||
|  |  | ||||||
|  | #define GRID_BINOP_LEFT(op, name)					\ | ||||||
|  |   template <typename T1, typename T2,					\ | ||||||
|  |             typename std::enable_if<is_lattice<T1>::value||is_lattice_expr<T1>::value,T1>::type * = nullptr> \ | ||||||
|  |   inline auto op(const T1 &lhs, const T2 &rhs)				\ | ||||||
|  |     ->decltype(LatticeBinaryExpression<GRID_BINOP(name),T1,T2>(GRID_BINOP(name)(),lhs,rhs)) \ | ||||||
|  |   {									\ | ||||||
|  |     return     LatticeBinaryExpression<GRID_BINOP(name),T1,T2>(GRID_BINOP(name)(),lhs,rhs);\ | ||||||
|  |   } | ||||||
|  |  | ||||||
|  | #define GRID_BINOP_RIGHT(op, name)					\ | ||||||
|  |   template <typename T1, typename T2,					\ | ||||||
|  |             typename std::enable_if<!is_lattice<T1>::value&&!is_lattice_expr<T1>::value,T1>::type * = nullptr, \ | ||||||
|  |             typename std::enable_if< is_lattice<T2>::value|| is_lattice_expr<T2>::value,T2>::type * = nullptr> \ | ||||||
|  |   inline auto op(const T1 &lhs, const T2 &rhs)				\ | ||||||
|  |     ->decltype(LatticeBinaryExpression<GRID_BINOP(name),T1,T2>(GRID_BINOP(name)(),lhs, rhs)) \ | ||||||
|  |   {									\ | ||||||
|  |     return     LatticeBinaryExpression<GRID_BINOP(name),T1,T2>(GRID_BINOP(name)(),lhs, rhs); \ | ||||||
|  |   } | ||||||
|  |  | ||||||
|  | #define GRID_DEF_BINOP(op, name)		\ | ||||||
|  |   GRID_BINOP_LEFT(op, name);			\ | ||||||
|  |   GRID_BINOP_RIGHT(op, name); | ||||||
|  |  | ||||||
|  | #define GRID_DEF_TRINOP(op, name)					\ | ||||||
|  |   template <typename T1, typename T2, typename T3>			\ | ||||||
|  |   inline auto op(const T1 &pred, const T2 &lhs, const T3 &rhs)		\ | ||||||
|  |     ->decltype(LatticeTrinaryExpression<GRID_TRINOP(name),T1,T2,T3>(GRID_TRINOP(name)(),pred, lhs, rhs)) \ | ||||||
|  |   {									\ | ||||||
|  |     return LatticeTrinaryExpression<GRID_TRINOP(name),T1,T2,T3>(GRID_TRINOP(name)(),pred, lhs, rhs); \ | ||||||
|  |   } | ||||||
|  |  | ||||||
|  | //////////////////////// | ||||||
|  | // Operator definitions | ||||||
|  | //////////////////////// | ||||||
|  | GRID_DEF_UNOP(operator-, UnarySub); | ||||||
|  | GRID_DEF_UNOP(Not, UnaryNot); | ||||||
|  | GRID_DEF_UNOP(operator!, UnaryNot); | ||||||
|  | //GRID_DEF_UNOP(adj, UnaryAdj); | ||||||
|  | //GRID_DEF_UNOP(conjugate, UnaryConj); | ||||||
|  | GRID_DEF_UNOP(trace, UnaryTrace); | ||||||
|  | GRID_DEF_UNOP(transpose, UnaryTranspose); | ||||||
|  | GRID_DEF_UNOP(Ta, UnaryTa); | ||||||
|  | GRID_DEF_UNOP(ProjectOnGroup, UnaryProjectOnGroup); | ||||||
|  | GRID_DEF_UNOP(timesI, UnaryTimesI); | ||||||
|  | GRID_DEF_UNOP(timesMinusI, UnaryTimesMinusI); | ||||||
|  | GRID_DEF_UNOP(abs, UnaryAbs);  // abs overloaded in cmath C++98; DON'T do the | ||||||
|  |                                // abs-fabs-dabs-labs thing | ||||||
|  | GRID_DEF_UNOP(sqrt, UnarySqrt); | ||||||
|  | GRID_DEF_UNOP(sin, UnarySin); | ||||||
|  | GRID_DEF_UNOP(cos, UnaryCos); | ||||||
|  | GRID_DEF_UNOP(asin, UnaryAsin); | ||||||
|  | GRID_DEF_UNOP(acos, UnaryAcos); | ||||||
|  | GRID_DEF_UNOP(log, UnaryLog); | ||||||
|  | GRID_DEF_UNOP(exp, UnaryExp); | ||||||
|  |  | ||||||
|  | GRID_DEF_BINOP(operator+, BinaryAdd); | ||||||
|  | GRID_DEF_BINOP(operator-, BinarySub); | ||||||
|  | GRID_DEF_BINOP(operator*, BinaryMul); | ||||||
|  | GRID_DEF_BINOP(operator/, BinaryDiv); | ||||||
|  |  | ||||||
|  | GRID_DEF_BINOP(operator&, BinaryAnd); | ||||||
|  | GRID_DEF_BINOP(operator|, BinaryOr); | ||||||
|  | GRID_DEF_BINOP(operator&&, BinaryAndAnd); | ||||||
|  | GRID_DEF_BINOP(operator||, BinaryOrOr); | ||||||
|  |  | ||||||
|  | GRID_DEF_TRINOP(where, TrinaryWhere); | ||||||
|  |  | ||||||
|  | ///////////////////////////////////////////////////////////// | ||||||
|  | // Closure convenience to force expression to evaluate | ||||||
|  | ///////////////////////////////////////////////////////////// | ||||||
|  | template <class Op, class T1> | ||||||
|  | auto closure(const LatticeUnaryExpression<Op, T1> &expr) | ||||||
|  |   -> Lattice<typename std::remove_const<decltype(expr.op.func(vecEval(0, expr.arg1)))>::type >  | ||||||
|  | { | ||||||
|  |   Lattice<typename std::remove_const<decltype(expr.op.func(vecEval(0, expr.arg1)))>::type > ret(expr); | ||||||
|  |   return ret; | ||||||
|  | } | ||||||
|  | template <class Op, class T1, class T2> | ||||||
|  | auto closure(const LatticeBinaryExpression<Op, T1, T2> &expr) | ||||||
|  |   -> Lattice<typename std::remove_const<decltype(expr.op.func(vecEval(0, expr.arg1),vecEval(0, expr.arg2)))>::type > | ||||||
|  | { | ||||||
|  |   Lattice<typename std::remove_const<decltype(expr.op.func(vecEval(0, expr.arg1),vecEval(0, expr.arg2)))>::type > ret(expr); | ||||||
|  |   return ret; | ||||||
|  | } | ||||||
|  | template <class Op, class T1, class T2, class T3> | ||||||
|  | auto closure(const LatticeTrinaryExpression<Op, T1, T2, T3> &expr) | ||||||
|  |   -> Lattice<typename std::remove_const<decltype(expr.op.func(vecEval(0, expr.arg1), | ||||||
|  | 				   vecEval(0, expr.arg2), | ||||||
|  | 				   vecEval(0, expr.arg3)))>::type > | ||||||
|  | { | ||||||
|  |   Lattice<typename std::remove_const<decltype(expr.op.func(vecEval(0, expr.arg1), | ||||||
|  | 				vecEval(0, expr.arg2), | ||||||
|  | 			        vecEval(0, expr.arg3)))>::type >  ret(expr); | ||||||
|  |   return ret; | ||||||
|  | } | ||||||
|  | #define EXPRESSION_CLOSURE(function)					\ | ||||||
|  |   template<class Expression,typename std::enable_if<is_lattice_expr<Expression>::value,void>::type * = nullptr> \ | ||||||
|  |     auto function(Expression &expr) -> decltype(function(closure(expr))) \ | ||||||
|  |   {									\ | ||||||
|  |     return function(closure(expr));					\ | ||||||
|  |   } | ||||||
|  |  | ||||||
|  |  | ||||||
|  | #undef GRID_UNOP | ||||||
|  | #undef GRID_BINOP | ||||||
|  | #undef GRID_TRINOP | ||||||
|  |  | ||||||
|  | #undef GRID_DEF_UNOP | ||||||
|  | #undef GRID_DEF_BINOP | ||||||
|  | #undef GRID_DEF_TRINOP | ||||||
|  |  | ||||||
|  | NAMESPACE_END(Grid); | ||||||
|  |  | ||||||
|  | #endif | ||||||
							
								
								
									
										258
									
								
								Grid/lattice/Lattice_arith.h
									
									
									
									
									
										Normal file
									
								
							
							
						
						
									
										258
									
								
								Grid/lattice/Lattice_arith.h
									
									
									
									
									
										Normal file
									
								
							| @@ -0,0 +1,258 @@ | |||||||
|  | /************************************************************************************* | ||||||
|  |  | ||||||
|  |     Grid physics library, www.github.com/paboyle/Grid  | ||||||
|  |  | ||||||
|  |     Source file: ./lib/lattice/Lattice_arith.h | ||||||
|  |  | ||||||
|  |     Copyright (C) 2015 | ||||||
|  |  | ||||||
|  | Author: Peter Boyle <paboyle@ph.ed.ac.uk> | ||||||
|  | Author: Christoph Lehner <christoph@lhnr.de> | ||||||
|  |  | ||||||
|  |     This program is free software; you can redistribute it and/or modify | ||||||
|  |     it under the terms of the GNU General Public License as published by | ||||||
|  |     the Free Software Foundation; either version 2 of the License, or | ||||||
|  |     (at your option) any later version. | ||||||
|  |  | ||||||
|  |     This program is distributed in the hope that it will be useful, | ||||||
|  |     but WITHOUT ANY WARRANTY; without even the implied warranty of | ||||||
|  |     MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the | ||||||
|  |     GNU General Public License for more details. | ||||||
|  |  | ||||||
|  |     You should have received a copy of the GNU General Public License along | ||||||
|  |     with this program; if not, write to the Free Software Foundation, Inc., | ||||||
|  |     51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. | ||||||
|  |  | ||||||
|  |     See the full license in the file "LICENSE" in the top level distribution directory | ||||||
|  | *************************************************************************************/ | ||||||
|  | /*  END LEGAL */ | ||||||
|  | #ifndef GRID_LATTICE_ARITH_H | ||||||
|  | #define GRID_LATTICE_ARITH_H | ||||||
|  |  | ||||||
|  | NAMESPACE_BEGIN(Grid); | ||||||
|  |  | ||||||
|  | ////////////////////////////////////////////////////////////////////////////////////////////////////// | ||||||
|  | //  avoid copy back routines for mult, mac, sub, add | ||||||
|  | ////////////////////////////////////////////////////////////////////////////////////////////////////// | ||||||
|  | template<class obj1,class obj2,class obj3> inline | ||||||
|  | void mult(Lattice<obj1> &ret,const Lattice<obj2> &lhs,const Lattice<obj3> &rhs){ | ||||||
|  |   ret.Checkerboard() = lhs.Checkerboard(); | ||||||
|  |   autoView( ret_v , ret, AcceleratorWrite); | ||||||
|  |   autoView( lhs_v , lhs, AcceleratorRead); | ||||||
|  |   autoView( rhs_v , rhs, AcceleratorRead); | ||||||
|  |   conformable(ret,rhs); | ||||||
|  |   conformable(lhs,rhs); | ||||||
|  |   accelerator_for(ss,lhs_v.size(),obj1::Nsimd(),{ | ||||||
|  |     decltype(coalescedRead(obj1())) tmp; | ||||||
|  |     auto lhs_t = lhs_v(ss); | ||||||
|  |     auto rhs_t = rhs_v(ss); | ||||||
|  |     mult(&tmp,&lhs_t,&rhs_t); | ||||||
|  |     coalescedWrite(ret_v[ss],tmp); | ||||||
|  |   }); | ||||||
|  | } | ||||||
|  |    | ||||||
|  | template<class obj1,class obj2,class obj3> inline | ||||||
|  | void mac(Lattice<obj1> &ret,const Lattice<obj2> &lhs,const Lattice<obj3> &rhs){ | ||||||
|  |   ret.Checkerboard() = lhs.Checkerboard(); | ||||||
|  |   conformable(ret,rhs); | ||||||
|  |   conformable(lhs,rhs); | ||||||
|  |   autoView( ret_v , ret, AcceleratorWrite); | ||||||
|  |   autoView( lhs_v , lhs, AcceleratorRead); | ||||||
|  |   autoView( rhs_v , rhs, AcceleratorRead); | ||||||
|  |   accelerator_for(ss,lhs_v.size(),obj1::Nsimd(),{ | ||||||
|  |     auto lhs_t=lhs_v(ss); | ||||||
|  |     auto rhs_t=rhs_v(ss); | ||||||
|  |     auto tmp  =ret_v(ss); | ||||||
|  |     mac(&tmp,&lhs_t,&rhs_t); | ||||||
|  |     coalescedWrite(ret_v[ss],tmp); | ||||||
|  |   }); | ||||||
|  | } | ||||||
|  |    | ||||||
|  | template<class obj1,class obj2,class obj3> inline | ||||||
|  | void sub(Lattice<obj1> &ret,const Lattice<obj2> &lhs,const Lattice<obj3> &rhs){ | ||||||
|  |   ret.Checkerboard() = lhs.Checkerboard(); | ||||||
|  |   conformable(ret,rhs); | ||||||
|  |   conformable(lhs,rhs); | ||||||
|  |   autoView( ret_v , ret, AcceleratorWrite); | ||||||
|  |   autoView( lhs_v , lhs, AcceleratorRead); | ||||||
|  |   autoView( rhs_v , rhs, AcceleratorRead); | ||||||
|  |   accelerator_for(ss,lhs_v.size(),obj1::Nsimd(),{ | ||||||
|  |     decltype(coalescedRead(obj1())) tmp; | ||||||
|  |     auto lhs_t=lhs_v(ss); | ||||||
|  |     auto rhs_t=rhs_v(ss); | ||||||
|  |     sub(&tmp,&lhs_t,&rhs_t); | ||||||
|  |     coalescedWrite(ret_v[ss],tmp); | ||||||
|  |   }); | ||||||
|  | } | ||||||
|  | template<class obj1,class obj2,class obj3> inline | ||||||
|  | void add(Lattice<obj1> &ret,const Lattice<obj2> &lhs,const Lattice<obj3> &rhs){ | ||||||
|  |   ret.Checkerboard() = lhs.Checkerboard(); | ||||||
|  |   conformable(ret,rhs); | ||||||
|  |   conformable(lhs,rhs); | ||||||
|  |   autoView( ret_v , ret, AcceleratorWrite); | ||||||
|  |   autoView( lhs_v , lhs, AcceleratorRead); | ||||||
|  |   autoView( rhs_v , rhs, AcceleratorRead); | ||||||
|  |   accelerator_for(ss,lhs_v.size(),obj1::Nsimd(),{ | ||||||
|  |     decltype(coalescedRead(obj1())) tmp; | ||||||
|  |     auto lhs_t=lhs_v(ss); | ||||||
|  |     auto rhs_t=rhs_v(ss); | ||||||
|  |     add(&tmp,&lhs_t,&rhs_t); | ||||||
|  |     coalescedWrite(ret_v[ss],tmp); | ||||||
|  |   }); | ||||||
|  | } | ||||||
|  |    | ||||||
|  | ////////////////////////////////////////////////////////////////////////////////////////////////////// | ||||||
|  | //  avoid copy back routines for mult, mac, sub, add | ||||||
|  | ////////////////////////////////////////////////////////////////////////////////////////////////////// | ||||||
|  | template<class obj1,class obj2,class obj3> inline | ||||||
|  | void mult(Lattice<obj1> &ret,const Lattice<obj2> &lhs,const obj3 &rhs){ | ||||||
|  |   ret.Checkerboard() = lhs.Checkerboard(); | ||||||
|  |   conformable(lhs,ret); | ||||||
|  |   autoView( ret_v , ret, AcceleratorWrite); | ||||||
|  |   autoView( lhs_v , lhs, AcceleratorRead); | ||||||
|  |   accelerator_for(ss,lhs_v.size(),obj1::Nsimd(),{ | ||||||
|  |     decltype(coalescedRead(obj1())) tmp; | ||||||
|  |     mult(&tmp,&lhs_v(ss),&rhs); | ||||||
|  |     coalescedWrite(ret_v[ss],tmp); | ||||||
|  |   }); | ||||||
|  | } | ||||||
|  |    | ||||||
|  | template<class obj1,class obj2,class obj3> inline | ||||||
|  | void mac(Lattice<obj1> &ret,const Lattice<obj2> &lhs,const obj3 &rhs){ | ||||||
|  |   ret.Checkerboard() = lhs.Checkerboard(); | ||||||
|  |   conformable(ret,lhs); | ||||||
|  |   autoView( ret_v , ret, AcceleratorWrite); | ||||||
|  |   autoView( lhs_v , lhs, AcceleratorRead); | ||||||
|  |   accelerator_for(ss,lhs_v.size(),obj1::Nsimd(),{ | ||||||
|  |     auto tmp  =ret_v(ss); | ||||||
|  |     auto lhs_t=lhs_v(ss); | ||||||
|  |     mac(&tmp,&lhs_t,&rhs); | ||||||
|  |     coalescedWrite(ret_v[ss],tmp); | ||||||
|  |   }); | ||||||
|  | } | ||||||
|  |    | ||||||
|  | template<class obj1,class obj2,class obj3> inline | ||||||
|  | void sub(Lattice<obj1> &ret,const Lattice<obj2> &lhs,const obj3 &rhs){ | ||||||
|  |   ret.Checkerboard() = lhs.Checkerboard(); | ||||||
|  |   conformable(ret,lhs); | ||||||
|  |   autoView( ret_v , ret, AcceleratorWrite); | ||||||
|  |   autoView( lhs_v , lhs, AcceleratorRead); | ||||||
|  |   accelerator_for(ss,lhs_v.size(),obj1::Nsimd(),{ | ||||||
|  |     decltype(coalescedRead(obj1())) tmp; | ||||||
|  |     auto lhs_t=lhs_v(ss); | ||||||
|  |     sub(&tmp,&lhs_t,&rhs); | ||||||
|  |     coalescedWrite(ret_v[ss],tmp); | ||||||
|  |   }); | ||||||
|  | } | ||||||
|  | template<class obj1,class obj2,class obj3> inline | ||||||
|  | void add(Lattice<obj1> &ret,const Lattice<obj2> &lhs,const obj3 &rhs){ | ||||||
|  |   ret.Checkerboard() = lhs.Checkerboard(); | ||||||
|  |   conformable(lhs,ret); | ||||||
|  |   autoView( ret_v , ret, AcceleratorWrite); | ||||||
|  |   autoView( lhs_v , lhs, AcceleratorRead); | ||||||
|  |   accelerator_for(ss,lhs_v.size(),obj1::Nsimd(),{ | ||||||
|  |     decltype(coalescedRead(obj1())) tmp; | ||||||
|  |     auto lhs_t=lhs_v(ss); | ||||||
|  |     add(&tmp,&lhs_t,&rhs); | ||||||
|  |     coalescedWrite(ret_v[ss],tmp); | ||||||
|  |   }); | ||||||
|  | } | ||||||
|  |  | ||||||
|  | ////////////////////////////////////////////////////////////////////////////////////////////////////// | ||||||
|  | //  avoid copy back routines for mult, mac, sub, add | ||||||
|  | ////////////////////////////////////////////////////////////////////////////////////////////////////// | ||||||
|  | template<class obj1,class obj2,class obj3> inline | ||||||
|  | void mult(Lattice<obj1> &ret,const obj2 &lhs,const Lattice<obj3> &rhs){ | ||||||
|  |   ret.Checkerboard() = rhs.Checkerboard(); | ||||||
|  |   conformable(ret,rhs); | ||||||
|  |   autoView( ret_v , ret, AcceleratorWrite); | ||||||
|  |   autoView( rhs_v , lhs, AcceleratorRead); | ||||||
|  |   accelerator_for(ss,rhs_v.size(),obj1::Nsimd(),{ | ||||||
|  |     decltype(coalescedRead(obj1())) tmp; | ||||||
|  |     auto rhs_t=rhs_v(ss); | ||||||
|  |     mult(&tmp,&lhs,&rhs_t); | ||||||
|  |     coalescedWrite(ret_v[ss],tmp); | ||||||
|  |   }); | ||||||
|  | } | ||||||
|  |    | ||||||
|  | template<class obj1,class obj2,class obj3> inline | ||||||
|  | void mac(Lattice<obj1> &ret,const obj2 &lhs,const Lattice<obj3> &rhs){ | ||||||
|  |   ret.Checkerboard() = rhs.Checkerboard(); | ||||||
|  |   conformable(ret,rhs); | ||||||
|  |   autoView( ret_v , ret, AcceleratorWrite); | ||||||
|  |   autoView( rhs_v , lhs, AcceleratorRead); | ||||||
|  |   accelerator_for(ss,rhs_v.size(),obj1::Nsimd(),{ | ||||||
|  |     auto tmp  =ret_v(ss); | ||||||
|  |     auto rhs_t=rhs_v(ss); | ||||||
|  |     mac(&tmp,&lhs,&rhs_t); | ||||||
|  |     coalescedWrite(ret_v[ss],tmp); | ||||||
|  |   }); | ||||||
|  | } | ||||||
|  |    | ||||||
|  | template<class obj1,class obj2,class obj3> inline | ||||||
|  | void sub(Lattice<obj1> &ret,const obj2 &lhs,const Lattice<obj3> &rhs){ | ||||||
|  |   ret.Checkerboard() = rhs.Checkerboard(); | ||||||
|  |   conformable(ret,rhs); | ||||||
|  |   autoView( ret_v , ret, AcceleratorWrite); | ||||||
|  |   autoView( rhs_v , lhs, AcceleratorRead); | ||||||
|  |   accelerator_for(ss,rhs_v.size(),obj1::Nsimd(),{ | ||||||
|  |     decltype(coalescedRead(obj1())) tmp; | ||||||
|  |     auto rhs_t=rhs_v(ss); | ||||||
|  |     sub(&tmp,&lhs,&rhs_t); | ||||||
|  |     coalescedWrite(ret_v[ss],tmp); | ||||||
|  |   }); | ||||||
|  | } | ||||||
|  | template<class obj1,class obj2,class obj3> inline | ||||||
|  | void add(Lattice<obj1> &ret,const obj2 &lhs,const Lattice<obj3> &rhs){ | ||||||
|  |   ret.Checkerboard() = rhs.Checkerboard(); | ||||||
|  |   conformable(ret,rhs); | ||||||
|  |   autoView( ret_v , ret, AcceleratorWrite); | ||||||
|  |   autoView( rhs_v , lhs, AcceleratorRead); | ||||||
|  |   accelerator_for(ss,rhs_v.size(),obj1::Nsimd(),{ | ||||||
|  |     decltype(coalescedRead(obj1())) tmp; | ||||||
|  |     auto rhs_t=rhs_v(ss); | ||||||
|  |     add(&tmp,&lhs,&rhs_t); | ||||||
|  |     coalescedWrite(ret_v[ss],tmp); | ||||||
|  |   }); | ||||||
|  | } | ||||||
|  |    | ||||||
|  | template<class sobj,class vobj> inline | ||||||
|  | void axpy(Lattice<vobj> &ret,sobj a,const Lattice<vobj> &x,const Lattice<vobj> &y){ | ||||||
|  |   ret.Checkerboard() = x.Checkerboard(); | ||||||
|  |   conformable(ret,x); | ||||||
|  |   conformable(x,y); | ||||||
|  |   autoView( ret_v , ret, AcceleratorWrite); | ||||||
|  |   autoView( x_v , x, AcceleratorRead); | ||||||
|  |   autoView( y_v , y, AcceleratorRead); | ||||||
|  |   accelerator_for(ss,x_v.size(),vobj::Nsimd(),{ | ||||||
|  |     auto tmp = a*coalescedRead(x_v[ss])+coalescedRead(y_v[ss]); | ||||||
|  |     coalescedWrite(ret_v[ss],tmp); | ||||||
|  |   }); | ||||||
|  | } | ||||||
|  | template<class sobj,class vobj> inline | ||||||
|  | void axpby(Lattice<vobj> &ret,sobj a,sobj b,const Lattice<vobj> &x,const Lattice<vobj> &y){ | ||||||
|  |   ret.Checkerboard() = x.Checkerboard(); | ||||||
|  |   conformable(ret,x); | ||||||
|  |   conformable(x,y); | ||||||
|  |   autoView( ret_v , ret, AcceleratorWrite); | ||||||
|  |   autoView( x_v , x, AcceleratorRead); | ||||||
|  |   autoView( y_v , y, AcceleratorRead); | ||||||
|  |   accelerator_for(ss,x_v.size(),vobj::Nsimd(),{ | ||||||
|  |     auto tmp = a*x_v(ss)+b*y_v(ss); | ||||||
|  |     coalescedWrite(ret_v[ss],tmp); | ||||||
|  |   }); | ||||||
|  | } | ||||||
|  |  | ||||||
|  | template<class sobj,class vobj> inline | ||||||
|  | RealD axpy_norm(Lattice<vobj> &ret,sobj a,const Lattice<vobj> &x,const Lattice<vobj> &y) | ||||||
|  | { | ||||||
|  |     return axpy_norm_fast(ret,a,x,y); | ||||||
|  | } | ||||||
|  | template<class sobj,class vobj> inline | ||||||
|  | RealD axpby_norm(Lattice<vobj> &ret,sobj a,sobj b,const Lattice<vobj> &x,const Lattice<vobj> &y) | ||||||
|  | { | ||||||
|  |     return axpby_norm_fast(ret,a,b,x,y); | ||||||
|  | } | ||||||
|  |  | ||||||
|  | NAMESPACE_END(Grid); | ||||||
|  | #endif | ||||||
							
								
								
									
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								Grid/lattice/Lattice_base.h
									
									
									
									
									
										Normal file
									
								
							
							
						
						
									
										379
									
								
								Grid/lattice/Lattice_base.h
									
									
									
									
									
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							| @@ -0,0 +1,379 @@ | |||||||
|  | /************************************************************************************* | ||||||
|  |  | ||||||
|  | Grid physics library, www.github.com/paboyle/Grid | ||||||
|  |  | ||||||
|  | Source file: ./lib/lattice/Lattice_base.h | ||||||
|  |  | ||||||
|  | Copyright (C) 2015 | ||||||
|  |  | ||||||
|  | Author: Azusa Yamaguchi <ayamaguc@staffmail.ed.ac.uk> | ||||||
|  | Author: Peter Boyle <paboyle@ph.ed.ac.uk> | ||||||
|  | Author: paboyle <paboyle@ph.ed.ac.uk> | ||||||
|  | Author: Christoph Lehner <christoph@lhnr.de> | ||||||
|  |  | ||||||
|  | This program is free software; you can redistribute it and/or modify | ||||||
|  | it under the terms of the GNU General Public License as published by | ||||||
|  | the Free Software Foundation; either version 2 of the License, or | ||||||
|  | (at your option) any later version. | ||||||
|  |  | ||||||
|  | This program is distributed in the hope that it will be useful, | ||||||
|  | but WITHOUT ANY WARRANTY; without even the implied warranty of | ||||||
|  | MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the | ||||||
|  | GNU General Public License for more details. | ||||||
|  |  | ||||||
|  | You should have received a copy of the GNU General Public License along | ||||||
|  | with this program; if not, write to the Free Software Foundation, Inc., | ||||||
|  | 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. | ||||||
|  |  | ||||||
|  | See the full license in the file "LICENSE" in the top level distribution | ||||||
|  | directory | ||||||
|  | *************************************************************************************/ | ||||||
|  | 			   /*  END LEGAL */ | ||||||
|  |  | ||||||
|  | #pragma once  | ||||||
|  |  | ||||||
|  | #define STREAMING_STORES | ||||||
|  |  | ||||||
|  | NAMESPACE_BEGIN(Grid); | ||||||
|  |  | ||||||
|  | extern int GridCshiftPermuteMap[4][16]; | ||||||
|  |  | ||||||
|  | ///////////////////////////////////////////////////////////////////////////////////////// | ||||||
|  | // The real lattice class, with normal copy and assignment semantics. | ||||||
|  | // This contains extra (host resident) grid pointer data that may be accessed by host code | ||||||
|  | ///////////////////////////////////////////////////////////////////////////////////////// | ||||||
|  | template<class vobj> | ||||||
|  | class Lattice : public LatticeAccelerator<vobj> | ||||||
|  | { | ||||||
|  | public: | ||||||
|  |   GridBase *Grid(void) const { return this->_grid; } | ||||||
|  |   /////////////////////////////////////////////////// | ||||||
|  |   // Member types | ||||||
|  |   /////////////////////////////////////////////////// | ||||||
|  |   typedef typename vobj::scalar_type scalar_type; | ||||||
|  |   typedef typename vobj::vector_type vector_type; | ||||||
|  |   typedef typename vobj::scalar_object scalar_object; | ||||||
|  |   typedef vobj vector_object; | ||||||
|  |  | ||||||
|  | private: | ||||||
|  |   void dealloc(void) | ||||||
|  |   { | ||||||
|  |     if( this->_odata_size ) { | ||||||
|  |       alignedAllocator<vobj> alloc; | ||||||
|  |       alloc.deallocate(this->_odata,this->_odata_size); | ||||||
|  |       this->_odata=nullptr; | ||||||
|  |       this->_odata_size=0; | ||||||
|  |     } | ||||||
|  |   } | ||||||
|  |   void resize(uint64_t size) | ||||||
|  |   { | ||||||
|  |     if ( this->_odata_size != size ) { | ||||||
|  |       alignedAllocator<vobj> alloc; | ||||||
|  |  | ||||||
|  |       dealloc(); | ||||||
|  |        | ||||||
|  |       this->_odata_size = size; | ||||||
|  |       if ( size ) | ||||||
|  | 	this->_odata      = alloc.allocate(this->_odata_size); | ||||||
|  |       else  | ||||||
|  | 	this->_odata      = nullptr; | ||||||
|  |     } | ||||||
|  |   } | ||||||
|  | public: | ||||||
|  |  | ||||||
|  |   ///////////////////////////////////////////////////////////////////////////////// | ||||||
|  |   // Can use to make accelerator dirty without copy from host ; useful for temporaries "dont care" prev contents | ||||||
|  |   ///////////////////////////////////////////////////////////////////////////////// | ||||||
|  |   void SetViewMode(ViewMode mode) { | ||||||
|  |     LatticeView<vobj> accessor(*( (LatticeAccelerator<vobj> *) this),mode); | ||||||
|  |     accessor.ViewClose(); | ||||||
|  |   } | ||||||
|  |  | ||||||
|  |   // Helper function to print the state of this object in the AccCache | ||||||
|  |   void PrintCacheState(void) | ||||||
|  |   { | ||||||
|  |     MemoryManager::PrintState(this->_odata); | ||||||
|  |   } | ||||||
|  |  | ||||||
|  |   ///////////////////////////////////////////////////////////////////////////////// | ||||||
|  |   // Return a view object that may be dereferenced in site loops. | ||||||
|  |   // The view is trivially copy constructible and may be copied to an accelerator device | ||||||
|  |   // in device lambdas | ||||||
|  |   ///////////////////////////////////////////////////////////////////////////////// | ||||||
|  |  | ||||||
|  |   LatticeView<vobj> View (ViewMode mode) const  | ||||||
|  |   { | ||||||
|  |     LatticeView<vobj> accessor(*( (LatticeAccelerator<vobj> *) this),mode); | ||||||
|  |     return accessor; | ||||||
|  |   } | ||||||
|  |  | ||||||
|  |   ~Lattice() {  | ||||||
|  |     if ( this->_odata_size ) { | ||||||
|  |       dealloc(); | ||||||
|  |     } | ||||||
|  |    } | ||||||
|  |   //////////////////////////////////////////////////////////////////////////////// | ||||||
|  |   // Expression Template closure support | ||||||
|  |   //////////////////////////////////////////////////////////////////////////////// | ||||||
|  |   template <typename Op, typename T1> inline Lattice<vobj> & operator=(const LatticeUnaryExpression<Op,T1> &expr) | ||||||
|  |   { | ||||||
|  |     GridBase *egrid(nullptr); | ||||||
|  |     GridFromExpression(egrid,expr); | ||||||
|  |     assert(egrid!=nullptr); | ||||||
|  |     conformable(this->_grid,egrid); | ||||||
|  |  | ||||||
|  |     int cb=-1; | ||||||
|  |     CBFromExpression(cb,expr); | ||||||
|  |     assert( (cb==Odd) || (cb==Even)); | ||||||
|  |     this->checkerboard=cb; | ||||||
|  |      | ||||||
|  |     auto exprCopy = expr; | ||||||
|  |     ExpressionViewOpen(exprCopy); | ||||||
|  |     auto me  = View(AcceleratorWriteDiscard); | ||||||
|  |     accelerator_for(ss,me.size(),vobj::Nsimd(),{ | ||||||
|  |       auto tmp = eval(ss,exprCopy); | ||||||
|  |       coalescedWrite(me[ss],tmp); | ||||||
|  |     }); | ||||||
|  |     me.ViewClose(); | ||||||
|  |     ExpressionViewClose(exprCopy); | ||||||
|  |     return *this; | ||||||
|  |   } | ||||||
|  |   template <typename Op, typename T1,typename T2> inline Lattice<vobj> & operator=(const LatticeBinaryExpression<Op,T1,T2> &expr) | ||||||
|  |   { | ||||||
|  |     GridBase *egrid(nullptr); | ||||||
|  |     GridFromExpression(egrid,expr); | ||||||
|  |     assert(egrid!=nullptr); | ||||||
|  |     conformable(this->_grid,egrid); | ||||||
|  |  | ||||||
|  |     int cb=-1; | ||||||
|  |     CBFromExpression(cb,expr); | ||||||
|  |     assert( (cb==Odd) || (cb==Even)); | ||||||
|  |     this->checkerboard=cb; | ||||||
|  |  | ||||||
|  |     auto exprCopy = expr; | ||||||
|  |     ExpressionViewOpen(exprCopy); | ||||||
|  |     auto me  = View(AcceleratorWriteDiscard); | ||||||
|  |     accelerator_for(ss,me.size(),vobj::Nsimd(),{ | ||||||
|  |       auto tmp = eval(ss,exprCopy); | ||||||
|  |       coalescedWrite(me[ss],tmp); | ||||||
|  |     }); | ||||||
|  |     me.ViewClose(); | ||||||
|  |     ExpressionViewClose(exprCopy); | ||||||
|  |     return *this; | ||||||
|  |   } | ||||||
|  |   template <typename Op, typename T1,typename T2,typename T3> inline Lattice<vobj> & operator=(const LatticeTrinaryExpression<Op,T1,T2,T3> &expr) | ||||||
|  |   { | ||||||
|  |     GridBase *egrid(nullptr); | ||||||
|  |     GridFromExpression(egrid,expr); | ||||||
|  |     assert(egrid!=nullptr); | ||||||
|  |     conformable(this->_grid,egrid); | ||||||
|  |  | ||||||
|  |     int cb=-1; | ||||||
|  |     CBFromExpression(cb,expr); | ||||||
|  |     assert( (cb==Odd) || (cb==Even)); | ||||||
|  |     this->checkerboard=cb; | ||||||
|  |     auto exprCopy = expr; | ||||||
|  |     ExpressionViewOpen(exprCopy); | ||||||
|  |     auto me  = View(AcceleratorWriteDiscard); | ||||||
|  |     accelerator_for(ss,me.size(),vobj::Nsimd(),{ | ||||||
|  |       auto tmp = eval(ss,exprCopy); | ||||||
|  |       coalescedWrite(me[ss],tmp); | ||||||
|  |     }); | ||||||
|  |     me.ViewClose(); | ||||||
|  |     ExpressionViewClose(exprCopy); | ||||||
|  |     return *this; | ||||||
|  |   } | ||||||
|  |   //GridFromExpression is tricky to do | ||||||
|  |   template<class Op,class T1> | ||||||
|  |   Lattice(const LatticeUnaryExpression<Op,T1> & expr) { | ||||||
|  |     this->_grid = nullptr; | ||||||
|  |     GridFromExpression(this->_grid,expr); | ||||||
|  |     assert(this->_grid!=nullptr); | ||||||
|  |  | ||||||
|  |     int cb=-1; | ||||||
|  |     CBFromExpression(cb,expr); | ||||||
|  |     assert( (cb==Odd) || (cb==Even)); | ||||||
|  |     this->checkerboard=cb; | ||||||
|  |  | ||||||
|  |     resize(this->_grid->oSites()); | ||||||
|  |  | ||||||
|  |     *this = expr; | ||||||
|  |   } | ||||||
|  |   template<class Op,class T1, class T2> | ||||||
|  |   Lattice(const LatticeBinaryExpression<Op,T1,T2> & expr) { | ||||||
|  |     this->_grid = nullptr; | ||||||
|  |     GridFromExpression(this->_grid,expr); | ||||||
|  |     assert(this->_grid!=nullptr); | ||||||
|  |  | ||||||
|  |     int cb=-1; | ||||||
|  |     CBFromExpression(cb,expr); | ||||||
|  |     assert( (cb==Odd) || (cb==Even)); | ||||||
|  |     this->checkerboard=cb; | ||||||
|  |  | ||||||
|  |     resize(this->_grid->oSites()); | ||||||
|  |  | ||||||
|  |     *this = expr; | ||||||
|  |   } | ||||||
|  |   template<class Op,class T1, class T2, class T3> | ||||||
|  |   Lattice(const LatticeTrinaryExpression<Op,T1,T2,T3> & expr) { | ||||||
|  |     this->_grid = nullptr; | ||||||
|  |     GridFromExpression(this->_grid,expr); | ||||||
|  |     assert(this->_grid!=nullptr); | ||||||
|  |  | ||||||
|  |     int cb=-1; | ||||||
|  |     CBFromExpression(cb,expr); | ||||||
|  |     assert( (cb==Odd) || (cb==Even)); | ||||||
|  |     this->checkerboard=cb; | ||||||
|  |  | ||||||
|  |     resize(this->_grid->oSites()); | ||||||
|  |  | ||||||
|  |     *this = expr; | ||||||
|  |   } | ||||||
|  |  | ||||||
|  |   template<class sobj> inline Lattice<vobj> & operator = (const sobj & r){ | ||||||
|  |     auto me  = View(CpuWrite); | ||||||
|  |     thread_for(ss,me.size(),{ | ||||||
|  | 	me[ss]= r; | ||||||
|  |     }); | ||||||
|  |     me.ViewClose(); | ||||||
|  |     return *this; | ||||||
|  |   } | ||||||
|  |  | ||||||
|  |   ////////////////////////////////////////////////////////////////// | ||||||
|  |   // Follow rule of five, with Constructor requires "grid" passed | ||||||
|  |   // to user defined constructor | ||||||
|  |   /////////////////////////////////////////// | ||||||
|  |   // user defined constructor | ||||||
|  |   /////////////////////////////////////////// | ||||||
|  |   Lattice(GridBase *grid,ViewMode mode=AcceleratorWriteDiscard) {  | ||||||
|  |     this->_grid = grid; | ||||||
|  |     resize(this->_grid->oSites()); | ||||||
|  |     assert((((uint64_t)&this->_odata[0])&0xF) ==0); | ||||||
|  |     this->checkerboard=0; | ||||||
|  |     SetViewMode(mode); | ||||||
|  |   } | ||||||
|  |    | ||||||
|  |   //  virtual ~Lattice(void) = default; | ||||||
|  |      | ||||||
|  |   void reset(GridBase* grid) { | ||||||
|  |     if (this->_grid != grid) { | ||||||
|  |       this->_grid = grid; | ||||||
|  |       this->resize(grid->oSites()); | ||||||
|  |       this->checkerboard = 0; | ||||||
|  |     } | ||||||
|  |   } | ||||||
|  |   /////////////////////////////////////////// | ||||||
|  |   // copy constructor | ||||||
|  |   /////////////////////////////////////////// | ||||||
|  |   Lattice(const Lattice& r){  | ||||||
|  |     this->_grid = r.Grid(); | ||||||
|  |     resize(this->_grid->oSites()); | ||||||
|  |     *this = r; | ||||||
|  |   } | ||||||
|  |   /////////////////////////////////////////// | ||||||
|  |   // move constructor | ||||||
|  |   /////////////////////////////////////////// | ||||||
|  |   Lattice(Lattice && r){  | ||||||
|  |     this->_grid = r.Grid(); | ||||||
|  |     this->_odata      = r._odata; | ||||||
|  |     this->_odata_size = r._odata_size; | ||||||
|  |     this->checkerboard= r.Checkerboard(); | ||||||
|  |     r._odata      = nullptr; | ||||||
|  |     r._odata_size = 0; | ||||||
|  |   } | ||||||
|  |   /////////////////////////////////////////// | ||||||
|  |   // assignment template | ||||||
|  |   /////////////////////////////////////////// | ||||||
|  |   template<class robj> inline Lattice<vobj> & operator = (const Lattice<robj> & r){ | ||||||
|  |     typename std::enable_if<!std::is_same<robj,vobj>::value,int>::type i=0; | ||||||
|  |     conformable(*this,r); | ||||||
|  |     this->checkerboard = r.Checkerboard(); | ||||||
|  |     auto me =   View(AcceleratorWriteDiscard); | ||||||
|  |     auto him= r.View(AcceleratorRead); | ||||||
|  |     accelerator_for(ss,me.size(),vobj::Nsimd(),{ | ||||||
|  |       coalescedWrite(me[ss],him(ss)); | ||||||
|  |     }); | ||||||
|  |     me.ViewClose();    him.ViewClose(); | ||||||
|  |     return *this; | ||||||
|  |   } | ||||||
|  |  | ||||||
|  |   /////////////////////////////////////////// | ||||||
|  |   // Copy assignment  | ||||||
|  |   /////////////////////////////////////////// | ||||||
|  |   inline Lattice<vobj> & operator = (const Lattice<vobj> & r){ | ||||||
|  |     this->checkerboard = r.Checkerboard(); | ||||||
|  |     conformable(*this,r); | ||||||
|  |     auto me =   View(AcceleratorWriteDiscard); | ||||||
|  |     auto him= r.View(AcceleratorRead); | ||||||
|  |     accelerator_for(ss,me.size(),vobj::Nsimd(),{ | ||||||
|  |       coalescedWrite(me[ss],him(ss)); | ||||||
|  |     }); | ||||||
|  |     me.ViewClose();    him.ViewClose(); | ||||||
|  |     return *this; | ||||||
|  |   } | ||||||
|  |   /////////////////////////////////////////// | ||||||
|  |   // Move assignment possible if same type | ||||||
|  |   /////////////////////////////////////////// | ||||||
|  |   inline Lattice<vobj> & operator = (Lattice<vobj> && r){ | ||||||
|  |  | ||||||
|  |     resize(0); // deletes if appropriate | ||||||
|  |     this->_grid       = r.Grid(); | ||||||
|  |     this->_odata      = r._odata; | ||||||
|  |     this->_odata_size = r._odata_size; | ||||||
|  |     this->checkerboard= r.Checkerboard(); | ||||||
|  |  | ||||||
|  |     r._odata      = nullptr; | ||||||
|  |     r._odata_size = 0; | ||||||
|  |      | ||||||
|  |     return *this; | ||||||
|  |   } | ||||||
|  |  | ||||||
|  |   ///////////////////////////////////////////////////////////////////////////// | ||||||
|  |   // *=,+=,-= operators inherit behvour from correspond */+/- operation | ||||||
|  |   ///////////////////////////////////////////////////////////////////////////// | ||||||
|  |   template<class T> inline Lattice<vobj> &operator *=(const T &r) { | ||||||
|  |     *this = (*this)*r; | ||||||
|  |     return *this; | ||||||
|  |   } | ||||||
|  |    | ||||||
|  |   template<class T> inline Lattice<vobj> &operator -=(const T &r) { | ||||||
|  |     *this = (*this)-r; | ||||||
|  |     return *this; | ||||||
|  |   } | ||||||
|  |   template<class T> inline Lattice<vobj> &operator +=(const T &r) { | ||||||
|  |     *this = (*this)+r; | ||||||
|  |     return *this; | ||||||
|  |   } | ||||||
|  |  | ||||||
|  |   friend inline void swap(Lattice &l, Lattice &r) {  | ||||||
|  |     conformable(l,r); | ||||||
|  |     LatticeAccelerator<vobj> tmp; | ||||||
|  |     LatticeAccelerator<vobj> *lp = (LatticeAccelerator<vobj> *)&l; | ||||||
|  |     LatticeAccelerator<vobj> *rp = (LatticeAccelerator<vobj> *)&r; | ||||||
|  |     tmp = *lp;    *lp=*rp;    *rp=tmp; | ||||||
|  |   } | ||||||
|  |  | ||||||
|  | }; // class Lattice | ||||||
|  |  | ||||||
|  | template<class vobj> std::ostream& operator<< (std::ostream& stream, const Lattice<vobj> &o){ | ||||||
|  |   typedef typename vobj::scalar_object sobj; | ||||||
|  |   for(int g=0;g<o.Grid()->_gsites;g++){ | ||||||
|  |  | ||||||
|  |     Coordinate gcoor; | ||||||
|  |     o.Grid()->GlobalIndexToGlobalCoor(g,gcoor); | ||||||
|  |  | ||||||
|  |     sobj ss; | ||||||
|  |     peekSite(ss,o,gcoor); | ||||||
|  |     stream<<"["; | ||||||
|  |     for(int d=0;d<gcoor.size();d++){ | ||||||
|  |       stream<<gcoor[d]; | ||||||
|  |       if(d!=gcoor.size()-1) stream<<","; | ||||||
|  |     } | ||||||
|  |     stream<<"]\t"; | ||||||
|  |     stream<<ss<<std::endl; | ||||||
|  |   } | ||||||
|  |   return stream; | ||||||
|  | } | ||||||
|  |    | ||||||
|  | NAMESPACE_END(Grid); | ||||||
|  |  | ||||||
							
								
								
									
										248
									
								
								Grid/lattice/Lattice_basis.h
									
									
									
									
									
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										248
									
								
								Grid/lattice/Lattice_basis.h
									
									
									
									
									
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							| @@ -0,0 +1,248 @@ | |||||||
|  | /************************************************************************************* | ||||||
|  |  | ||||||
|  | Grid physics library, www.github.com/paboyle/Grid | ||||||
|  |  | ||||||
|  | Source file: ./lib/lattice/Lattice_basis.h | ||||||
|  |  | ||||||
|  | Copyright (C) 2015 | ||||||
|  |  | ||||||
|  | Author: Peter Boyle <paboyle@ph.ed.ac.uk> | ||||||
|  | Author: paboyle <paboyle@ph.ed.ac.uk> | ||||||
|  | Author: Christoph Lehner <christoph@lhnr.de> | ||||||
|  |  | ||||||
|  | This program is free software; you can redistribute it and/or modify | ||||||
|  | it under the terms of the GNU General Public License as published by | ||||||
|  | the Free Software Foundation; either version 2 of the License, or | ||||||
|  | (at your option) any later version. | ||||||
|  |  | ||||||
|  | This program is distributed in the hope that it will be useful, | ||||||
|  | but WITHOUT ANY WARRANTY; without even the implied warranty of | ||||||
|  | MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the | ||||||
|  | GNU General Public License for more details. | ||||||
|  |  | ||||||
|  | You should have received a copy of the GNU General Public License along | ||||||
|  | with this program; if not, write to the Free Software Foundation, Inc., | ||||||
|  | 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. | ||||||
|  |  | ||||||
|  | See the full license in the file "LICENSE" in the top level distribution | ||||||
|  | directory | ||||||
|  | *************************************************************************************/ | ||||||
|  | 			   /*  END LEGAL */ | ||||||
|  |  | ||||||
|  | #pragma once | ||||||
|  |  | ||||||
|  | NAMESPACE_BEGIN(Grid); | ||||||
|  |  | ||||||
|  | template<class Field> | ||||||
|  | void basisOrthogonalize(std::vector<Field> &basis,Field &w,int k)  | ||||||
|  | { | ||||||
|  |   // If assume basis[j] are already orthonormal, | ||||||
|  |   // can take all inner products in parallel saving 2x bandwidth | ||||||
|  |   // Save 3x bandwidth on the second line of loop. | ||||||
|  |   // perhaps 2.5x speed up. | ||||||
|  |   // 2x overall in Multigrid Lanczos   | ||||||
|  |   for(int j=0; j<k; ++j){ | ||||||
|  |     auto ip = innerProduct(basis[j],w); | ||||||
|  |     w = w - ip*basis[j]; | ||||||
|  |   } | ||||||
|  | } | ||||||
|  |  | ||||||
|  | template<class VField, class Matrix> | ||||||
|  | void basisRotate(VField &basis,Matrix& Qt,int j0, int j1, int k0,int k1,int Nm)  | ||||||
|  | { | ||||||
|  |   typedef decltype(basis[0]) Field; | ||||||
|  |   typedef decltype(basis[0].View(AcceleratorRead)) View; | ||||||
|  |  | ||||||
|  |   Vector<View> basis_v; basis_v.reserve(basis.size()); | ||||||
|  |   typedef typename std::remove_reference<decltype(basis_v[0][0])>::type vobj; | ||||||
|  |   typedef typename std::remove_reference<decltype(Qt(0,0))>::type Coeff_t; | ||||||
|  |   GridBase* grid = basis[0].Grid(); | ||||||
|  |        | ||||||
|  |   for(int k=0;k<basis.size();k++){ | ||||||
|  |     basis_v.push_back(basis[k].View(AcceleratorWrite)); | ||||||
|  |   } | ||||||
|  |  | ||||||
|  | #if ( (!defined(GRID_CUDA)) ) | ||||||
|  |   int max_threads = thread_max(); | ||||||
|  |   Vector < vobj > Bt(Nm * max_threads); | ||||||
|  |   thread_region | ||||||
|  |     { | ||||||
|  |       vobj* B = &Bt[Nm * thread_num()]; | ||||||
|  |       thread_for_in_region(ss, grid->oSites(),{ | ||||||
|  | 	  for(int j=j0; j<j1; ++j) B[j]=0.; | ||||||
|  |        | ||||||
|  | 	  for(int j=j0; j<j1; ++j){ | ||||||
|  | 	    for(int k=k0; k<k1; ++k){ | ||||||
|  | 	      B[j] +=Qt(j,k) * basis_v[k][ss]; | ||||||
|  | 	    } | ||||||
|  | 	  } | ||||||
|  | 	  for(int j=j0; j<j1; ++j){ | ||||||
|  | 	    basis_v[j][ss] = B[j]; | ||||||
|  | 	  } | ||||||
|  | 	}); | ||||||
|  |     } | ||||||
|  | #else | ||||||
|  |   View *basis_vp = &basis_v[0]; | ||||||
|  |  | ||||||
|  |   int nrot = j1-j0; | ||||||
|  |   if (!nrot) // edge case not handled gracefully by Cuda | ||||||
|  |     return; | ||||||
|  |  | ||||||
|  |   uint64_t oSites   =grid->oSites(); | ||||||
|  |   uint64_t siteBlock=(grid->oSites()+nrot-1)/nrot; // Maximum 1 additional vector overhead | ||||||
|  |  | ||||||
|  |   Vector <vobj> Bt(siteBlock * nrot);  | ||||||
|  |   auto Bp=&Bt[0]; | ||||||
|  |  | ||||||
|  |   // GPU readable copy of matrix | ||||||
|  |   Vector<Coeff_t> Qt_jv(Nm*Nm); | ||||||
|  |   Coeff_t *Qt_p = & Qt_jv[0]; | ||||||
|  |   thread_for(i,Nm*Nm,{ | ||||||
|  |       int j = i/Nm; | ||||||
|  |       int k = i%Nm; | ||||||
|  |       Qt_p[i]=Qt(j,k); | ||||||
|  |   }); | ||||||
|  |  | ||||||
|  |   // Block the loop to keep storage footprint down | ||||||
|  |   for(uint64_t s=0;s<oSites;s+=siteBlock){ | ||||||
|  |  | ||||||
|  |     // remaining work in this block | ||||||
|  |     int ssites=MIN(siteBlock,oSites-s); | ||||||
|  |  | ||||||
|  |     // zero out the accumulators | ||||||
|  |     accelerator_for(ss,siteBlock*nrot,vobj::Nsimd(),{ | ||||||
|  | 	decltype(coalescedRead(Bp[ss])) z; | ||||||
|  | 	z=Zero(); | ||||||
|  | 	coalescedWrite(Bp[ss],z); | ||||||
|  |       }); | ||||||
|  |  | ||||||
|  |     accelerator_for(sj,ssites*nrot,vobj::Nsimd(),{ | ||||||
|  | 	 | ||||||
|  | 	int j =sj%nrot; | ||||||
|  | 	int jj  =j0+j; | ||||||
|  | 	int ss =sj/nrot; | ||||||
|  | 	int sss=ss+s; | ||||||
|  |  | ||||||
|  | 	for(int k=k0; k<k1; ++k){ | ||||||
|  | 	  auto tmp = coalescedRead(Bp[ss*nrot+j]); | ||||||
|  | 	  coalescedWrite(Bp[ss*nrot+j],tmp+ Qt_p[jj*Nm+k] * coalescedRead(basis_vp[k][sss])); | ||||||
|  | 	} | ||||||
|  |       }); | ||||||
|  |  | ||||||
|  |     accelerator_for(sj,ssites*nrot,vobj::Nsimd(),{ | ||||||
|  | 	int j =sj%nrot; | ||||||
|  | 	int jj  =j0+j; | ||||||
|  | 	int ss =sj/nrot; | ||||||
|  | 	int sss=ss+s; | ||||||
|  | 	coalescedWrite(basis_vp[jj][sss],coalescedRead(Bp[ss*nrot+j])); | ||||||
|  |       }); | ||||||
|  |   } | ||||||
|  | #endif | ||||||
|  |  | ||||||
|  |   for(int k=0;k<basis.size();k++) basis_v[k].ViewClose(); | ||||||
|  | } | ||||||
|  |  | ||||||
|  | // Extract a single rotated vector | ||||||
|  | template<class Field> | ||||||
|  | void basisRotateJ(Field &result,std::vector<Field> &basis,Eigen::MatrixXd& Qt,int j, int k0,int k1,int Nm)  | ||||||
|  | { | ||||||
|  |   typedef decltype(basis[0].View(AcceleratorRead)) View; | ||||||
|  |   typedef typename Field::vector_object vobj; | ||||||
|  |   GridBase* grid = basis[0].Grid(); | ||||||
|  |  | ||||||
|  |   result.Checkerboard() = basis[0].Checkerboard(); | ||||||
|  |  | ||||||
|  |   Vector<View> basis_v; basis_v.reserve(basis.size()); | ||||||
|  |   for(int k=0;k<basis.size();k++){ | ||||||
|  |     basis_v.push_back(basis[k].View(AcceleratorRead)); | ||||||
|  |   } | ||||||
|  |   vobj zz=Zero(); | ||||||
|  |   Vector<double> Qt_jv(Nm); | ||||||
|  |   double * Qt_j = & Qt_jv[0]; | ||||||
|  |   for(int k=0;k<Nm;++k) Qt_j[k]=Qt(j,k); | ||||||
|  |  | ||||||
|  |   auto basis_vp=& basis_v[0]; | ||||||
|  |   autoView(result_v,result,AcceleratorWrite); | ||||||
|  |   accelerator_for(ss, grid->oSites(),vobj::Nsimd(),{ | ||||||
|  |     vobj zzz=Zero(); | ||||||
|  |     auto B=coalescedRead(zzz); | ||||||
|  |     for(int k=k0; k<k1; ++k){ | ||||||
|  |       B +=Qt_j[k] * coalescedRead(basis_vp[k][ss]); | ||||||
|  |     } | ||||||
|  |     coalescedWrite(result_v[ss], B); | ||||||
|  |   }); | ||||||
|  |   for(int k=0;k<basis.size();k++) basis_v[k].ViewClose(); | ||||||
|  | } | ||||||
|  |  | ||||||
|  | template<class Field> | ||||||
|  | void basisReorderInPlace(std::vector<Field> &_v,std::vector<RealD>& sort_vals, std::vector<int>& idx)  | ||||||
|  | { | ||||||
|  |   int vlen = idx.size(); | ||||||
|  |  | ||||||
|  |   assert(vlen>=1); | ||||||
|  |   assert(vlen<=sort_vals.size()); | ||||||
|  |   assert(vlen<=_v.size()); | ||||||
|  |  | ||||||
|  |   for (size_t i=0;i<vlen;i++) { | ||||||
|  |  | ||||||
|  |     if (idx[i] != i) { | ||||||
|  |  | ||||||
|  |       ////////////////////////////////////// | ||||||
|  |       // idx[i] is a table of desired sources giving a permutation. | ||||||
|  |       // Swap v[i] with v[idx[i]]. | ||||||
|  |       // Find  j>i for which _vnew[j] = _vold[i], | ||||||
|  |       // track the move idx[j] => idx[i] | ||||||
|  |       // track the move idx[i] => i | ||||||
|  |       ////////////////////////////////////// | ||||||
|  |       size_t j; | ||||||
|  |       for (j=i;j<idx.size();j++) | ||||||
|  | 	if (idx[j]==i) | ||||||
|  | 	  break; | ||||||
|  |  | ||||||
|  |       assert(idx[i] > i);     assert(j!=idx.size());      assert(idx[j]==i); | ||||||
|  |  | ||||||
|  |       swap(_v[i],_v[idx[i]]); // should use vector move constructor, no data copy | ||||||
|  |       std::swap(sort_vals[i],sort_vals[idx[i]]); | ||||||
|  |  | ||||||
|  |       idx[j] = idx[i]; | ||||||
|  |       idx[i] = i; | ||||||
|  |     } | ||||||
|  |   } | ||||||
|  | } | ||||||
|  |  | ||||||
|  | inline std::vector<int> basisSortGetIndex(std::vector<RealD>& sort_vals)  | ||||||
|  | { | ||||||
|  |   std::vector<int> idx(sort_vals.size()); | ||||||
|  |   std::iota(idx.begin(), idx.end(), 0); | ||||||
|  |  | ||||||
|  |   // sort indexes based on comparing values in v | ||||||
|  |   std::sort(idx.begin(), idx.end(), [&sort_vals](int i1, int i2) { | ||||||
|  |     return ::fabs(sort_vals[i1]) < ::fabs(sort_vals[i2]); | ||||||
|  |   }); | ||||||
|  |   return idx; | ||||||
|  | } | ||||||
|  |  | ||||||
|  | template<class Field> | ||||||
|  | void basisSortInPlace(std::vector<Field> & _v,std::vector<RealD>& sort_vals, bool reverse)  | ||||||
|  | { | ||||||
|  |   std::vector<int> idx = basisSortGetIndex(sort_vals); | ||||||
|  |   if (reverse) | ||||||
|  |     std::reverse(idx.begin(), idx.end()); | ||||||
|  |    | ||||||
|  |   basisReorderInPlace(_v,sort_vals,idx); | ||||||
|  | } | ||||||
|  |  | ||||||
|  | // PAB: faster to compute the inner products first then fuse loops. | ||||||
|  | // If performance critical can improve. | ||||||
|  | template<class Field> | ||||||
|  | void basisDeflate(const std::vector<Field> &_v,const std::vector<RealD>& eval,const Field& src_orig,Field& result) { | ||||||
|  |   result = Zero(); | ||||||
|  |   assert(_v.size()==eval.size()); | ||||||
|  |   int N = (int)_v.size(); | ||||||
|  |   for (int i=0;i<N;i++) { | ||||||
|  |     Field& tmp = _v[i]; | ||||||
|  |     axpy(result,TensorRemove(innerProduct(tmp,src_orig)) / eval[i],tmp,result); | ||||||
|  |   } | ||||||
|  | } | ||||||
|  |  | ||||||
|  | NAMESPACE_END(Grid); | ||||||
							
								
								
									
										179
									
								
								Grid/lattice/Lattice_comparison.h
									
									
									
									
									
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										179
									
								
								Grid/lattice/Lattice_comparison.h
									
									
									
									
									
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							| @@ -0,0 +1,179 @@ | |||||||
|  | /************************************************************************************* | ||||||
|  |  | ||||||
|  |     Grid physics library, www.github.com/paboyle/Grid  | ||||||
|  |  | ||||||
|  |     Source file: ./lib/lattice/Lattice_comparison.h | ||||||
|  |  | ||||||
|  |     Copyright (C) 2015 | ||||||
|  |  | ||||||
|  | Author: Azusa Yamaguchi <ayamaguc@staffmail.ed.ac.uk> | ||||||
|  | Author: Peter Boyle <paboyle@ph.ed.ac.uk> | ||||||
|  |  | ||||||
|  |     This program is free software; you can redistribute it and/or modify | ||||||
|  |     it under the terms of the GNU General Public License as published by | ||||||
|  |     the Free Software Foundation; either version 2 of the License, or | ||||||
|  |     (at your option) any later version. | ||||||
|  |  | ||||||
|  |     This program is distributed in the hope that it will be useful, | ||||||
|  |     but WITHOUT ANY WARRANTY; without even the implied warranty of | ||||||
|  |     MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the | ||||||
|  |     GNU General Public License for more details. | ||||||
|  |  | ||||||
|  |     You should have received a copy of the GNU General Public License along | ||||||
|  |     with this program; if not, write to the Free Software Foundation, Inc., | ||||||
|  |     51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. | ||||||
|  |  | ||||||
|  |     See the full license in the file "LICENSE" in the top level distribution directory | ||||||
|  | *************************************************************************************/ | ||||||
|  | /*  END LEGAL */ | ||||||
|  | #ifndef GRID_LATTICE_COMPARISON_H | ||||||
|  | #define GRID_LATTICE_COMPARISON_H | ||||||
|  |  | ||||||
|  | NAMESPACE_BEGIN(Grid); | ||||||
|  |  | ||||||
|  | ////////////////////////////////////////////////////////////////////////// | ||||||
|  | // relational operators | ||||||
|  | //  | ||||||
|  | // Support <,>,<=,>=,==,!= | ||||||
|  | // | ||||||
|  | //Query supporting bitwise &, |, ^, ! | ||||||
|  | //Query supporting logical &&, ||,  | ||||||
|  | ////////////////////////////////////////////////////////////////////////// | ||||||
|  |  | ||||||
|  | typedef iScalar<vInteger> vPredicate ; | ||||||
|  |  | ||||||
|  | ////////////////////////////////////////////////////////////////////////// | ||||||
|  | // compare lattice to lattice | ||||||
|  | ////////////////////////////////////////////////////////////////////////// | ||||||
|  |  | ||||||
|  | template<class vfunctor,class lobj,class robj>   | ||||||
|  | inline Lattice<vPredicate> LLComparison(vfunctor op,const Lattice<lobj> &lhs,const Lattice<robj> &rhs) | ||||||
|  | { | ||||||
|  |   Lattice<vPredicate> ret(rhs.Grid()); | ||||||
|  |   autoView( lhs_v, lhs, CpuRead); | ||||||
|  |   autoView( rhs_v, rhs, CpuRead); | ||||||
|  |   autoView( ret_v, ret, CpuWrite); | ||||||
|  |   thread_for( ss, rhs_v.size(), { | ||||||
|  |       ret_v[ss]=op(lhs_v[ss],rhs_v[ss]); | ||||||
|  |   }); | ||||||
|  |   return ret; | ||||||
|  | } | ||||||
|  | ////////////////////////////////////////////////////////////////////////// | ||||||
|  | // compare lattice to scalar | ||||||
|  | ////////////////////////////////////////////////////////////////////////// | ||||||
|  | template<class vfunctor,class lobj,class robj>  | ||||||
|  | inline Lattice<vPredicate> LSComparison(vfunctor op,const Lattice<lobj> &lhs,const robj &rhs) | ||||||
|  | { | ||||||
|  |   Lattice<vPredicate> ret(lhs.Grid()); | ||||||
|  |   autoView( lhs_v, lhs, CpuRead); | ||||||
|  |   autoView( ret_v, ret, CpuWrite); | ||||||
|  |   thread_for( ss, lhs_v.size(), { | ||||||
|  |     ret_v[ss]=op(lhs_v[ss],rhs); | ||||||
|  |   }); | ||||||
|  |   return ret; | ||||||
|  | } | ||||||
|  | ////////////////////////////////////////////////////////////////////////// | ||||||
|  | // compare scalar to lattice | ||||||
|  | ////////////////////////////////////////////////////////////////////////// | ||||||
|  | template<class vfunctor,class lobj,class robj>  | ||||||
|  | inline Lattice<vPredicate> SLComparison(vfunctor op,const lobj &lhs,const Lattice<robj> &rhs) | ||||||
|  | { | ||||||
|  |   Lattice<vPredicate> ret(rhs.Grid()); | ||||||
|  |   autoView( rhs_v, rhs, CpuRead); | ||||||
|  |   autoView( ret_v, ret, CpuWrite); | ||||||
|  |   thread_for( ss, rhs_v.size(), { | ||||||
|  |     ret_v[ss]=op(lhs,rhs_v[ss]); | ||||||
|  |   }); | ||||||
|  |   return ret; | ||||||
|  | } | ||||||
|  |    | ||||||
|  | ////////////////////////////////////////////////////////////////////////// | ||||||
|  | // Map to functors | ||||||
|  | ////////////////////////////////////////////////////////////////////////// | ||||||
|  | // Less than | ||||||
|  | template<class lobj,class robj> | ||||||
|  | inline Lattice<vPredicate> operator < (const Lattice<lobj> & lhs, const Lattice<robj> & rhs) { | ||||||
|  |   return LLComparison(vlt<lobj,robj>(),lhs,rhs); | ||||||
|  | } | ||||||
|  | template<class lobj,class robj> | ||||||
|  | inline Lattice<vPredicate> operator < (const Lattice<lobj> & lhs, const robj & rhs) { | ||||||
|  |   return LSComparison(vlt<lobj,robj>(),lhs,rhs); | ||||||
|  | } | ||||||
|  | template<class lobj,class robj> | ||||||
|  | inline Lattice<vPredicate> operator < (const lobj & lhs, const Lattice<robj> & rhs) { | ||||||
|  |   return SLComparison(vlt<lobj,robj>(),lhs,rhs); | ||||||
|  | } | ||||||
|  |    | ||||||
|  | // Less than equal | ||||||
|  | template<class lobj,class robj> | ||||||
|  | inline Lattice<vPredicate> operator <= (const Lattice<lobj> & lhs, const Lattice<robj> & rhs) { | ||||||
|  |   return LLComparison(vle<lobj,robj>(),lhs,rhs); | ||||||
|  | } | ||||||
|  | template<class lobj,class robj> | ||||||
|  | inline Lattice<vPredicate> operator <= (const Lattice<lobj> & lhs, const robj & rhs) { | ||||||
|  |   return LSComparison(vle<lobj,robj>(),lhs,rhs); | ||||||
|  | } | ||||||
|  | template<class lobj,class robj> | ||||||
|  | inline Lattice<vPredicate> operator <= (const lobj & lhs, const Lattice<robj> & rhs) { | ||||||
|  |   return SLComparison(vle<lobj,robj>(),lhs,rhs); | ||||||
|  | } | ||||||
|  |    | ||||||
|  | // Greater than  | ||||||
|  | template<class lobj,class robj> | ||||||
|  | inline Lattice<vPredicate> operator > (const Lattice<lobj> & lhs, const Lattice<robj> & rhs) { | ||||||
|  |   return LLComparison(vgt<lobj,robj>(),lhs,rhs); | ||||||
|  | } | ||||||
|  | template<class lobj,class robj> | ||||||
|  | inline Lattice<vPredicate> operator > (const Lattice<lobj> & lhs, const robj & rhs) { | ||||||
|  |   return LSComparison(vgt<lobj,robj>(),lhs,rhs); | ||||||
|  | } | ||||||
|  | template<class lobj,class robj> | ||||||
|  | inline Lattice<vPredicate> operator > (const lobj & lhs, const Lattice<robj> & rhs) { | ||||||
|  |   return SLComparison(vgt<lobj,robj>(),lhs,rhs); | ||||||
|  | } | ||||||
|  |    | ||||||
|  |    | ||||||
|  | // Greater than equal | ||||||
|  | template<class lobj,class robj> | ||||||
|  | inline Lattice<vPredicate> operator >= (const Lattice<lobj> & lhs, const Lattice<robj> & rhs) { | ||||||
|  |   return LLComparison(vge<lobj,robj>(),lhs,rhs); | ||||||
|  | } | ||||||
|  | template<class lobj,class robj> | ||||||
|  | inline Lattice<vPredicate> operator >= (const Lattice<lobj> & lhs, const robj & rhs) { | ||||||
|  |   return LSComparison(vge<lobj,robj>(),lhs,rhs); | ||||||
|  | } | ||||||
|  | template<class lobj,class robj> | ||||||
|  | inline Lattice<vPredicate> operator >= (const lobj & lhs, const Lattice<robj> & rhs) { | ||||||
|  |   return SLComparison(vge<lobj,robj>(),lhs,rhs); | ||||||
|  | } | ||||||
|  |     | ||||||
|  | // equal | ||||||
|  | template<class lobj,class robj> | ||||||
|  | inline Lattice<vPredicate> operator == (const Lattice<lobj> & lhs, const Lattice<robj> & rhs) { | ||||||
|  |   return LLComparison(veq<lobj,robj>(),lhs,rhs); | ||||||
|  | } | ||||||
|  | template<class lobj,class robj> | ||||||
|  | inline Lattice<vPredicate> operator == (const Lattice<lobj> & lhs, const robj & rhs) { | ||||||
|  |   return LSComparison(veq<lobj,robj>(),lhs,rhs); | ||||||
|  | } | ||||||
|  | template<class lobj,class robj> | ||||||
|  | inline Lattice<vPredicate> operator == (const lobj & lhs, const Lattice<robj> & rhs) { | ||||||
|  |   return SLComparison(veq<lobj,robj>(),lhs,rhs); | ||||||
|  | } | ||||||
|  |     | ||||||
|  |     | ||||||
|  | // not equal | ||||||
|  | template<class lobj,class robj> | ||||||
|  | inline Lattice<vPredicate> operator != (const Lattice<lobj> & lhs, const Lattice<robj> & rhs) { | ||||||
|  |   return LLComparison(vne<lobj,robj>(),lhs,rhs); | ||||||
|  | } | ||||||
|  | template<class lobj,class robj> | ||||||
|  | inline Lattice<vPredicate> operator != (const Lattice<lobj> & lhs, const robj & rhs) { | ||||||
|  |   return LSComparison(vne<lobj,robj>(),lhs,rhs); | ||||||
|  | } | ||||||
|  | template<class lobj,class robj> | ||||||
|  | inline Lattice<vPredicate> operator != (const lobj & lhs, const Lattice<robj> & rhs) { | ||||||
|  |   return SLComparison(vne<lobj,robj>(),lhs,rhs); | ||||||
|  | } | ||||||
|  | NAMESPACE_END(Grid); | ||||||
|  | #endif | ||||||
| @@ -26,10 +26,10 @@ Author: Peter Boyle <paboyle@ph.ed.ac.uk> | |||||||
|     See the full license in the file "LICENSE" in the top level distribution directory |     See the full license in the file "LICENSE" in the top level distribution directory | ||||||
|     *************************************************************************************/ |     *************************************************************************************/ | ||||||
|     /*  END LEGAL */ |     /*  END LEGAL */ | ||||||
| #ifndef GRID_COMPARISON_H |  | ||||||
| #define GRID_COMPARISON_H |  | ||||||
| 
 | 
 | ||||||
| namespace Grid { | #pragma once | ||||||
|  | 
 | ||||||
|  | NAMESPACE_BEGIN(Grid); | ||||||
| 
 | 
 | ||||||
|   /////////////////////////////////////////
 |   /////////////////////////////////////////
 | ||||||
|   // This implementation is a bit poor.
 |   // This implementation is a bit poor.
 | ||||||
| @@ -44,42 +44,42 @@ namespace Grid { | |||||||
|   //
 |   //
 | ||||||
|   template<class lobj,class robj> class veq { |   template<class lobj,class robj> class veq { | ||||||
|   public: |   public: | ||||||
|     vInteger operator()(const lobj &lhs, const robj &rhs) |     accelerator vInteger operator()(const lobj &lhs, const robj &rhs) | ||||||
|     {  |     {  | ||||||
|       return (lhs) == (rhs); |       return (lhs) == (rhs); | ||||||
|     } |     } | ||||||
|   }; |   }; | ||||||
|   template<class lobj,class robj> class vne { |   template<class lobj,class robj> class vne { | ||||||
|   public: |   public: | ||||||
|     vInteger operator()(const lobj &lhs, const robj &rhs) |     accelerator vInteger operator()(const lobj &lhs, const robj &rhs) | ||||||
|     {  |     {  | ||||||
|       return (lhs) != (rhs); |       return (lhs) != (rhs); | ||||||
|     } |     } | ||||||
|   }; |   }; | ||||||
|   template<class lobj,class robj> class vlt { |   template<class lobj,class robj> class vlt { | ||||||
|   public: |   public: | ||||||
|     vInteger operator()(const lobj &lhs, const robj &rhs) |     accelerator vInteger operator()(const lobj &lhs, const robj &rhs) | ||||||
|     {  |     {  | ||||||
|       return (lhs) < (rhs); |       return (lhs) < (rhs); | ||||||
|     } |     } | ||||||
|   }; |   }; | ||||||
|   template<class lobj,class robj> class vle { |   template<class lobj,class robj> class vle { | ||||||
|   public: |   public: | ||||||
|     vInteger operator()(const lobj &lhs, const robj &rhs) |     accelerator vInteger operator()(const lobj &lhs, const robj &rhs) | ||||||
|     {  |     {  | ||||||
|       return (lhs) <= (rhs); |       return (lhs) <= (rhs); | ||||||
|     } |     } | ||||||
|   }; |   }; | ||||||
|   template<class lobj,class robj> class vgt { |   template<class lobj,class robj> class vgt { | ||||||
|   public: |   public: | ||||||
|     vInteger operator()(const lobj &lhs, const robj &rhs) |     accelerator vInteger operator()(const lobj &lhs, const robj &rhs) | ||||||
|     {  |     {  | ||||||
|       return (lhs) > (rhs); |       return (lhs) > (rhs); | ||||||
|     } |     } | ||||||
|   }; |   }; | ||||||
|   template<class lobj,class robj> class vge { |   template<class lobj,class robj> class vge { | ||||||
|     public: |     public: | ||||||
|     vInteger operator()(const lobj &lhs, const robj &rhs) |     accelerator vInteger operator()(const lobj &lhs, const robj &rhs) | ||||||
|     {  |     {  | ||||||
|       return (lhs) >= (rhs); |       return (lhs) >= (rhs); | ||||||
|     } |     } | ||||||
| @@ -88,42 +88,42 @@ namespace Grid { | |||||||
|   // Generic list of functors
 |   // Generic list of functors
 | ||||||
|   template<class lobj,class robj> class seq { |   template<class lobj,class robj> class seq { | ||||||
|   public: |   public: | ||||||
|     Integer operator()(const lobj &lhs, const robj &rhs) |     accelerator Integer operator()(const lobj &lhs, const robj &rhs) | ||||||
|     {  |     {  | ||||||
|       return (lhs) == (rhs); |       return (lhs) == (rhs); | ||||||
|     } |     } | ||||||
|   }; |   }; | ||||||
|   template<class lobj,class robj> class sne { |   template<class lobj,class robj> class sne { | ||||||
|   public: |   public: | ||||||
|     Integer operator()(const lobj &lhs, const robj &rhs) |     accelerator Integer operator()(const lobj &lhs, const robj &rhs) | ||||||
|     {  |     {  | ||||||
|       return (lhs) != (rhs); |       return (lhs) != (rhs); | ||||||
|     } |     } | ||||||
|   }; |   }; | ||||||
|   template<class lobj,class robj> class slt { |   template<class lobj,class robj> class slt { | ||||||
|   public: |   public: | ||||||
|     Integer operator()(const lobj &lhs, const robj &rhs) |     accelerator Integer operator()(const lobj &lhs, const robj &rhs) | ||||||
|     {  |     {  | ||||||
|       return (lhs) < (rhs); |       return (lhs) < (rhs); | ||||||
|     } |     } | ||||||
|   }; |   }; | ||||||
|   template<class lobj,class robj> class sle { |   template<class lobj,class robj> class sle { | ||||||
|   public: |   public: | ||||||
|     Integer operator()(const lobj &lhs, const robj &rhs) |     accelerator Integer operator()(const lobj &lhs, const robj &rhs) | ||||||
|     {  |     {  | ||||||
|       return (lhs) <= (rhs); |       return (lhs) <= (rhs); | ||||||
|     } |     } | ||||||
|   }; |   }; | ||||||
|   template<class lobj,class robj> class sgt { |   template<class lobj,class robj> class sgt { | ||||||
|   public: |   public: | ||||||
|     Integer operator()(const lobj &lhs, const robj &rhs) |     accelerator Integer operator()(const lobj &lhs, const robj &rhs) | ||||||
|     {  |     {  | ||||||
|       return (lhs) > (rhs); |       return (lhs) > (rhs); | ||||||
|     } |     } | ||||||
|   }; |   }; | ||||||
|   template<class lobj,class robj> class sge { |   template<class lobj,class robj> class sge { | ||||||
|   public: |   public: | ||||||
|     Integer operator()(const lobj &lhs, const robj &rhs) |     accelerator Integer operator()(const lobj &lhs, const robj &rhs) | ||||||
|     {  |     {  | ||||||
|       return (lhs) >= (rhs); |       return (lhs) >= (rhs); | ||||||
|     } |     } | ||||||
| @@ -133,12 +133,12 @@ namespace Grid { | |||||||
|   // Integer and real get extra relational functions.
 |   // Integer and real get extra relational functions.
 | ||||||
|   //////////////////////////////////////////////////////////////////////////////////////////////////////
 |   //////////////////////////////////////////////////////////////////////////////////////////////////////
 | ||||||
|   template<class sfunctor, class vsimd,IfNotComplex<vsimd> = 0>  |   template<class sfunctor, class vsimd,IfNotComplex<vsimd> = 0>  | ||||||
|     inline vInteger Comparison(sfunctor sop,const vsimd & lhs, const vsimd & rhs) |     accelerator_inline vInteger Comparison(sfunctor sop,const vsimd & lhs, const vsimd & rhs) | ||||||
|     { |     { | ||||||
|       typedef typename vsimd::scalar_type scalar; |       typedef typename vsimd::scalar_type scalar; | ||||||
|       std::vector<scalar> vlhs(vsimd::Nsimd());   // Use functors to reduce this to single implementation
 |       ExtractBuffer<scalar> vlhs(vsimd::Nsimd());   // Use functors to reduce this to single implementation
 | ||||||
|       std::vector<scalar> vrhs(vsimd::Nsimd()); |       ExtractBuffer<scalar> vrhs(vsimd::Nsimd()); | ||||||
|       std::vector<Integer> vpred(vsimd::Nsimd()); |       ExtractBuffer<Integer> vpred(vsimd::Nsimd()); | ||||||
|       vInteger ret; |       vInteger ret; | ||||||
|       extract<vsimd,scalar>(lhs,vlhs); |       extract<vsimd,scalar>(lhs,vlhs); | ||||||
|       extract<vsimd,scalar>(rhs,vrhs); |       extract<vsimd,scalar>(rhs,vrhs); | ||||||
| @@ -150,11 +150,11 @@ namespace Grid { | |||||||
|     } |     } | ||||||
| 
 | 
 | ||||||
|   template<class sfunctor, class vsimd,IfNotComplex<vsimd> = 0>  |   template<class sfunctor, class vsimd,IfNotComplex<vsimd> = 0>  | ||||||
|     inline vInteger Comparison(sfunctor sop,const vsimd & lhs, const typename vsimd::scalar_type & rhs) |     accelerator_inline vInteger Comparison(sfunctor sop,const vsimd & lhs, const typename vsimd::scalar_type & rhs) | ||||||
|     { |     { | ||||||
|       typedef typename vsimd::scalar_type scalar; |       typedef typename vsimd::scalar_type scalar; | ||||||
|       std::vector<scalar> vlhs(vsimd::Nsimd());   // Use functors to reduce this to single implementation
 |       ExtractBuffer<scalar> vlhs(vsimd::Nsimd());   // Use functors to reduce this to single implementation
 | ||||||
|       std::vector<Integer> vpred(vsimd::Nsimd()); |       ExtractBuffer<Integer> vpred(vsimd::Nsimd()); | ||||||
|       vInteger ret; |       vInteger ret; | ||||||
|       extract<vsimd,scalar>(lhs,vlhs); |       extract<vsimd,scalar>(lhs,vlhs); | ||||||
|       for(int s=0;s<vsimd::Nsimd();s++){ |       for(int s=0;s<vsimd::Nsimd();s++){ | ||||||
| @@ -165,11 +165,11 @@ namespace Grid { | |||||||
|     } |     } | ||||||
| 
 | 
 | ||||||
|   template<class sfunctor, class vsimd,IfNotComplex<vsimd> = 0>  |   template<class sfunctor, class vsimd,IfNotComplex<vsimd> = 0>  | ||||||
|     inline vInteger Comparison(sfunctor sop,const typename vsimd::scalar_type & lhs, const vsimd & rhs) |     accelerator_inline vInteger Comparison(sfunctor sop,const typename vsimd::scalar_type & lhs, const vsimd & rhs) | ||||||
|     { |     { | ||||||
|       typedef typename vsimd::scalar_type scalar; |       typedef typename vsimd::scalar_type scalar; | ||||||
|       std::vector<scalar> vrhs(vsimd::Nsimd());   // Use functors to reduce this to single implementation
 |       ExtractBuffer<scalar> vrhs(vsimd::Nsimd());   // Use functors to reduce this to single implementation
 | ||||||
|       std::vector<Integer> vpred(vsimd::Nsimd()); |       ExtractBuffer<Integer> vpred(vsimd::Nsimd()); | ||||||
|       vInteger ret; |       vInteger ret; | ||||||
|       extract<vsimd,scalar>(rhs,vrhs); |       extract<vsimd,scalar>(rhs,vrhs); | ||||||
|       for(int s=0;s<vsimd::Nsimd();s++){ |       for(int s=0;s<vsimd::Nsimd();s++){ | ||||||
| @@ -179,52 +179,54 @@ namespace Grid { | |||||||
|       return ret; |       return ret; | ||||||
|     } |     } | ||||||
| 
 | 
 | ||||||
| #define DECLARE_RELATIONAL(op,functor) \ | #define DECLARE_RELATIONAL_EQ(op,functor) \ | ||||||
|   template<class vsimd,IfSimd<vsimd> = 0>\ |   template<class vsimd,IfSimd<vsimd> = 0>\ | ||||||
|     inline vInteger operator op (const vsimd & lhs, const vsimd & rhs)\ |     accelerator_inline vInteger operator op (const vsimd & lhs, const vsimd & rhs)\ | ||||||
|     {\ |     {\ | ||||||
|       typedef typename vsimd::scalar_type scalar;\ |       typedef typename vsimd::scalar_type scalar;\ | ||||||
|       return Comparison(functor<scalar,scalar>(),lhs,rhs);\ |       return Comparison(functor<scalar,scalar>(),lhs,rhs);\ | ||||||
|     }\ |     }\ | ||||||
|   template<class vsimd,IfSimd<vsimd> = 0>\ |   template<class vsimd,IfSimd<vsimd> = 0>\ | ||||||
|     inline vInteger operator op (const vsimd & lhs, const typename vsimd::scalar_type & rhs) \ |     accelerator_inline vInteger operator op (const vsimd & lhs, const typename vsimd::scalar_type & rhs) \ | ||||||
|     {\ |     {\ | ||||||
|       typedef typename vsimd::scalar_type scalar;\ |       typedef typename vsimd::scalar_type scalar;\ | ||||||
|       return Comparison(functor<scalar,scalar>(),lhs,rhs);\ |       return Comparison(functor<scalar,scalar>(),lhs,rhs);\ | ||||||
|     }\ |     }\ | ||||||
|   template<class vsimd,IfSimd<vsimd> = 0>\ |   template<class vsimd,IfSimd<vsimd> = 0>\ | ||||||
|     inline vInteger operator op (const typename vsimd::scalar_type & lhs, const vsimd & rhs) \ |     accelerator_inline vInteger operator op (const typename vsimd::scalar_type & lhs, const vsimd & rhs) \ | ||||||
|     {\ |     {\ | ||||||
|       typedef typename vsimd::scalar_type scalar;\ |       typedef typename vsimd::scalar_type scalar;\ | ||||||
|       return Comparison(functor<scalar,scalar>(),lhs,rhs);\ |       return Comparison(functor<scalar,scalar>(),lhs,rhs);\ | ||||||
|     }\ |     }\ | ||||||
|   template<class vsimd>\ |   template<class vsimd>\ | ||||||
|     inline vInteger operator op(const iScalar<vsimd> &lhs,const iScalar<vsimd> &rhs)\ |     accelerator_inline vInteger operator op(const iScalar<vsimd> &lhs,const typename vsimd::scalar_type &rhs) \ | ||||||
|     {									\ |  | ||||||
|       return lhs._internal op rhs._internal;				\ |  | ||||||
|     }									\ |  | ||||||
|   template<class vsimd>\ |  | ||||||
|     inline vInteger operator op(const iScalar<vsimd> &lhs,const typename vsimd::scalar_type &rhs) \ |  | ||||||
|     {									\ |     {									\ | ||||||
|       return lhs._internal op rhs;					\ |       return lhs._internal op rhs;					\ | ||||||
|     }									\ |     }									\ | ||||||
|   template<class vsimd>\ |   template<class vsimd>\ | ||||||
|     inline vInteger operator op(const typename vsimd::scalar_type &lhs,const iScalar<vsimd> &rhs) \ |     accelerator_inline vInteger operator op(const typename vsimd::scalar_type &lhs,const iScalar<vsimd> &rhs) \ | ||||||
|     {									\ |     {									\ | ||||||
|       return lhs op rhs._internal;					\ |       return lhs op rhs._internal;					\ | ||||||
|     }									 |     }									\ | ||||||
| 
 | 
 | ||||||
|  | #define DECLARE_RELATIONAL(op,functor) \ | ||||||
|  |   DECLARE_RELATIONAL_EQ(op,functor)    \ | ||||||
|  |   template<class vsimd>\ | ||||||
|  |     accelerator_inline vInteger operator op(const iScalar<vsimd> &lhs,const iScalar<vsimd> &rhs)\ | ||||||
|  |     {									\ | ||||||
|  |       return lhs._internal op rhs._internal;				\ | ||||||
|  |     }									 | ||||||
| 
 | 
 | ||||||
| DECLARE_RELATIONAL(<,slt); | DECLARE_RELATIONAL(<,slt); | ||||||
| DECLARE_RELATIONAL(<=,sle); | DECLARE_RELATIONAL(<=,sle); | ||||||
| DECLARE_RELATIONAL(>,sgt); | DECLARE_RELATIONAL(>,sgt); | ||||||
| DECLARE_RELATIONAL(>=,sge); | DECLARE_RELATIONAL(>=,sge); | ||||||
| DECLARE_RELATIONAL(==,seq); | DECLARE_RELATIONAL_EQ(==,seq); | ||||||
| DECLARE_RELATIONAL(!=,sne); | DECLARE_RELATIONAL(!=,sne); | ||||||
| 
 | 
 | ||||||
| #undef DECLARE_RELATIONAL | #undef DECLARE_RELATIONAL | ||||||
| 
 | 
 | ||||||
| } | NAMESPACE_END(Grid); | ||||||
|  | 
 | ||||||
| 
 | 
 | ||||||
| 
 | 
 | ||||||
| #endif |  | ||||||
| @@ -1,4 +1,4 @@ | |||||||
|     /*************************************************************************************
 | /*************************************************************************************
 | ||||||
| 
 | 
 | ||||||
|     Grid physics library, www.github.com/paboyle/Grid  |     Grid physics library, www.github.com/paboyle/Grid  | ||||||
| 
 | 
 | ||||||
| @@ -23,18 +23,18 @@ Author: Peter Boyle <paboyle@ph.ed.ac.uk> | |||||||
|     51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. |     51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. | ||||||
| 
 | 
 | ||||||
|     See the full license in the file "LICENSE" in the top level distribution directory |     See the full license in the file "LICENSE" in the top level distribution directory | ||||||
|     *************************************************************************************/ | *************************************************************************************/ | ||||||
|     /*  END LEGAL */ | /*  END LEGAL */ | ||||||
| #ifndef GRID_LATTICE_CONFORMABLE_H | #ifndef GRID_LATTICE_CONFORMABLE_H | ||||||
| #define GRID_LATTICE_CONFORMABLE_H | #define GRID_LATTICE_CONFORMABLE_H | ||||||
| 
 | 
 | ||||||
| namespace Grid { | NAMESPACE_BEGIN(Grid); | ||||||
| 
 |  | ||||||
|     template<class obj1,class obj2> void conformable(const Lattice<obj1> &lhs,const Lattice<obj2> &rhs) |  | ||||||
|     { |  | ||||||
|         assert(lhs._grid == rhs._grid); |  | ||||||
|         assert(lhs.checkerboard == rhs.checkerboard); |  | ||||||
|     } |  | ||||||
| 
 | 
 | ||||||
|  | template<class obj1,class obj2> void conformable(const Lattice<obj1> &lhs,const Lattice<obj2> &rhs) | ||||||
|  | { | ||||||
|  |   assert(lhs.Grid() == rhs.Grid()); | ||||||
|  |   assert(lhs.Checkerboard() == rhs.Checkerboard()); | ||||||
| } | } | ||||||
|  | 
 | ||||||
|  | NAMESPACE_END(Grid); | ||||||
| #endif | #endif | ||||||
							
								
								
									
										55
									
								
								Grid/lattice/Lattice_coordinate.h
									
									
									
									
									
										Normal file
									
								
							
							
						
						
									
										55
									
								
								Grid/lattice/Lattice_coordinate.h
									
									
									
									
									
										Normal file
									
								
							| @@ -0,0 +1,55 @@ | |||||||
|  | /************************************************************************************* | ||||||
|  |  | ||||||
|  |     Grid physics library, www.github.com/paboyle/Grid  | ||||||
|  |  | ||||||
|  |     Source file: ./lib/lattice/Lattice_coordinate.h | ||||||
|  |  | ||||||
|  |     Copyright (C) 2015 | ||||||
|  |  | ||||||
|  | Author: Peter Boyle <paboyle@ph.ed.ac.uk> | ||||||
|  |  | ||||||
|  |     This program is free software; you can redistribute it and/or modify | ||||||
|  |     it under the terms of the GNU General Public License as published by | ||||||
|  |     the Free Software Foundation; either version 2 of the License, or | ||||||
|  |     (at your option) any later version. | ||||||
|  |  | ||||||
|  |     This program is distributed in the hope that it will be useful, | ||||||
|  |     but WITHOUT ANY WARRANTY; without even the implied warranty of | ||||||
|  |     MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the | ||||||
|  |     GNU General Public License for more details. | ||||||
|  |  | ||||||
|  |     You should have received a copy of the GNU General Public License along | ||||||
|  |     with this program; if not, write to the Free Software Foundation, Inc., | ||||||
|  |     51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. | ||||||
|  |  | ||||||
|  |     See the full license in the file "LICENSE" in the top level distribution directory | ||||||
|  | *************************************************************************************/ | ||||||
|  | /*  END LEGAL */ | ||||||
|  | #pragma once  | ||||||
|  |  | ||||||
|  | NAMESPACE_BEGIN(Grid); | ||||||
|  |  | ||||||
|  | template<class iobj> inline void LatticeCoordinate(Lattice<iobj> &l,int mu) | ||||||
|  | { | ||||||
|  |   typedef typename iobj::scalar_type scalar_type; | ||||||
|  |   typedef typename iobj::vector_type vector_type; | ||||||
|  |  | ||||||
|  |   GridBase *grid = l.Grid(); | ||||||
|  |   int Nsimd = grid->iSites(); | ||||||
|  |  | ||||||
|  |   autoView(l_v, l, CpuWrite); | ||||||
|  |   thread_for( o, grid->oSites(), { | ||||||
|  |     vector_type vI; | ||||||
|  |     Coordinate gcoor; | ||||||
|  |     ExtractBuffer<scalar_type> mergebuf(Nsimd); | ||||||
|  |     for(int i=0;i<grid->iSites();i++){ | ||||||
|  |       grid->RankIndexToGlobalCoor(grid->ThisRank(),o,i,gcoor); | ||||||
|  |       mergebuf[i]=(Integer)gcoor[mu]; | ||||||
|  |     } | ||||||
|  |     merge<vector_type,scalar_type>(vI,mergebuf); | ||||||
|  |     l_v[o]=vI; | ||||||
|  |   }); | ||||||
|  | }; | ||||||
|  |  | ||||||
|  | NAMESPACE_END(Grid); | ||||||
|  |  | ||||||
							
								
								
									
										87
									
								
								Grid/lattice/Lattice_local.h
									
									
									
									
									
										Normal file
									
								
							
							
						
						
									
										87
									
								
								Grid/lattice/Lattice_local.h
									
									
									
									
									
										Normal file
									
								
							| @@ -0,0 +1,87 @@ | |||||||
|  | /************************************************************************************* | ||||||
|  |  | ||||||
|  |     Grid physics library, www.github.com/paboyle/Grid  | ||||||
|  |  | ||||||
|  |     Source file: ./lib/lattice/Lattice_local.h | ||||||
|  |  | ||||||
|  |     Copyright (C) 2015 | ||||||
|  |  | ||||||
|  | Author: Peter Boyle <paboyle@ph.ed.ac.uk> | ||||||
|  |  | ||||||
|  |     This program is free software; you can redistribute it and/or modify | ||||||
|  |     it under the terms of the GNU General Public License as published by | ||||||
|  |     the Free Software Foundation; either version 2 of the License, or | ||||||
|  |     (at your option) any later version. | ||||||
|  |  | ||||||
|  |     This program is distributed in the hope that it will be useful, | ||||||
|  |     but WITHOUT ANY WARRANTY; without even the implied warranty of | ||||||
|  |     MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the | ||||||
|  |     GNU General Public License for more details. | ||||||
|  |  | ||||||
|  |     You should have received a copy of the GNU General Public License along | ||||||
|  |     with this program; if not, write to the Free Software Foundation, Inc., | ||||||
|  |     51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. | ||||||
|  |  | ||||||
|  |     See the full license in the file "LICENSE" in the top level distribution directory | ||||||
|  | *************************************************************************************/ | ||||||
|  | /*  END LEGAL */ | ||||||
|  | #ifndef GRID_LATTICE_LOCALREDUCTION_H | ||||||
|  | #define GRID_LATTICE_LOCALREDUCTION_H | ||||||
|  |  | ||||||
|  | /////////////////////////////////////////////// | ||||||
|  | // localInner, localNorm, outerProduct | ||||||
|  | /////////////////////////////////////////////// | ||||||
|  |  | ||||||
|  | NAMESPACE_BEGIN(Grid); | ||||||
|  |  | ||||||
|  | ///////////////////////////////////////////////////// | ||||||
|  | // Non site, reduced locally reduced routines | ||||||
|  | ///////////////////////////////////////////////////// | ||||||
|  |    | ||||||
|  | // localNorm2, | ||||||
|  | template<class vobj> | ||||||
|  | inline auto localNorm2 (const Lattice<vobj> &rhs)-> Lattice<typename vobj::tensor_reduced> | ||||||
|  | { | ||||||
|  |   Lattice<typename vobj::tensor_reduced> ret(rhs.Grid()); | ||||||
|  |   autoView( rhs_v , rhs, AcceleratorRead); | ||||||
|  |   autoView( ret_v , ret, AcceleratorWrite); | ||||||
|  |   accelerator_for(ss,rhs_v.size(),vobj::Nsimd(),{ | ||||||
|  |     coalescedWrite(ret_v[ss],innerProduct(rhs_v(ss),rhs_v(ss))); | ||||||
|  |   }); | ||||||
|  |   return ret; | ||||||
|  | } | ||||||
|  |    | ||||||
|  | // localInnerProduct | ||||||
|  | template<class vobj> | ||||||
|  | inline auto localInnerProduct (const Lattice<vobj> &lhs,const Lattice<vobj> &rhs) -> Lattice<typename vobj::tensor_reduced> | ||||||
|  | { | ||||||
|  |   Lattice<typename vobj::tensor_reduced> ret(rhs.Grid()); | ||||||
|  |   autoView( lhs_v , lhs, AcceleratorRead); | ||||||
|  |   autoView( rhs_v , rhs, AcceleratorRead); | ||||||
|  |   autoView( ret_v , ret, AcceleratorWrite); | ||||||
|  |   accelerator_for(ss,rhs_v.size(),vobj::Nsimd(),{ | ||||||
|  |     coalescedWrite(ret_v[ss],innerProduct(lhs_v(ss),rhs_v(ss))); | ||||||
|  |   }); | ||||||
|  |   return ret; | ||||||
|  | } | ||||||
|  |    | ||||||
|  | // outerProduct Scalar x Scalar -> Scalar | ||||||
|  | //              Vector x Vector -> Matrix | ||||||
|  | template<class ll,class rr> | ||||||
|  | inline auto outerProduct (const Lattice<ll> &lhs,const Lattice<rr> &rhs) -> Lattice<decltype(outerProduct(ll(),rr()))> | ||||||
|  | { | ||||||
|  |   typedef decltype(coalescedRead(ll())) sll; | ||||||
|  |   typedef decltype(coalescedRead(rr())) srr; | ||||||
|  |   Lattice<decltype(outerProduct(ll(),rr()))> ret(rhs.Grid()); | ||||||
|  |   autoView( lhs_v , lhs, AcceleratorRead); | ||||||
|  |   autoView( rhs_v , rhs, AcceleratorRead); | ||||||
|  |   autoView( ret_v , ret, AcceleratorWrite); | ||||||
|  |   accelerator_for(ss,rhs_v.size(),1,{ | ||||||
|  |     // FIXME had issues with scalar version of outer  | ||||||
|  |     // Use vector [] operator and don't read coalesce this loop | ||||||
|  |     ret_v[ss]=outerProduct(lhs_v[ss],rhs_v[ss]); | ||||||
|  |   }); | ||||||
|  |   return ret; | ||||||
|  | } | ||||||
|  | NAMESPACE_END(Grid); | ||||||
|  | #endif | ||||||
							
								
								
									
										202
									
								
								Grid/lattice/Lattice_matrix_reduction.h
									
									
									
									
									
										Normal file
									
								
							
							
						
						
									
										202
									
								
								Grid/lattice/Lattice_matrix_reduction.h
									
									
									
									
									
										Normal file
									
								
							| @@ -0,0 +1,202 @@ | |||||||
|  | /************************************************************************************* | ||||||
|  |     Grid physics library, www.github.com/paboyle/Grid  | ||||||
|  |     Source file: ./lib/lattice/Lattice_reduction.h | ||||||
|  |     Copyright (C) 2015 | ||||||
|  | Author: Azusa Yamaguchi <ayamaguc@staffmail.ed.ac.uk> | ||||||
|  | Author: Peter Boyle <paboyle@ph.ed.ac.uk> | ||||||
|  | Author: paboyle <paboyle@ph.ed.ac.uk> | ||||||
|  |     This program is free software; you can redistribute it and/or modify | ||||||
|  |     it under the terms of the GNU General Public License as published by | ||||||
|  |     the Free Software Foundation; either version 2 of the License, or | ||||||
|  |     (at your option) any later version. | ||||||
|  |     This program is distributed in the hope that it will be useful, | ||||||
|  |     but WITHOUT ANY WARRANTY; without even the implied warranty of | ||||||
|  |     MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the | ||||||
|  |     GNU General Public License for more details. | ||||||
|  |     You should have received a copy of the GNU General Public License along | ||||||
|  |     with this program; if not, write to the Free Software Foundation, Inc., | ||||||
|  |     51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. | ||||||
|  |     See the full license in the file "LICENSE" in the top level distribution directory | ||||||
|  | *************************************************************************************/ | ||||||
|  | /*  END LEGAL */ | ||||||
|  | #pragma once  | ||||||
|  | #include <Grid/Grid_Eigen_Dense.h> | ||||||
|  |  | ||||||
|  | #ifdef GRID_WARN_SUBOPTIMAL | ||||||
|  | #warning "Optimisation alert all these reduction loops are NOT threaded " | ||||||
|  | #endif      | ||||||
|  |  | ||||||
|  | NAMESPACE_BEGIN(Grid); | ||||||
|  |  | ||||||
|  | template<class vobj> | ||||||
|  | static void sliceMaddMatrix (Lattice<vobj> &R,Eigen::MatrixXcd &aa,const Lattice<vobj> &X,const Lattice<vobj> &Y,int Orthog,RealD scale=1.0)  | ||||||
|  | {     | ||||||
|  |   typedef typename vobj::scalar_object sobj; | ||||||
|  |   typedef typename vobj::scalar_type scalar_type; | ||||||
|  |   typedef typename vobj::vector_type vector_type; | ||||||
|  |  | ||||||
|  |   int Nblock = X.Grid()->GlobalDimensions()[Orthog]; | ||||||
|  |  | ||||||
|  |   GridBase *FullGrid  = X.Grid(); | ||||||
|  |   //  GridBase *SliceGrid = makeSubSliceGrid(FullGrid,Orthog); | ||||||
|  |  | ||||||
|  |   //  Lattice<vobj> Xslice(SliceGrid); | ||||||
|  |   //  Lattice<vobj> Rslice(SliceGrid); | ||||||
|  |  | ||||||
|  |   assert( FullGrid->_simd_layout[Orthog]==1); | ||||||
|  |  | ||||||
|  |   //FIXME package in a convenient iterator | ||||||
|  |   //Should loop over a plane orthogonal to direction "Orthog" | ||||||
|  |   int stride=FullGrid->_slice_stride[Orthog]; | ||||||
|  |   int block =FullGrid->_slice_block [Orthog]; | ||||||
|  |   int nblock=FullGrid->_slice_nblock[Orthog]; | ||||||
|  |   int ostride=FullGrid->_ostride[Orthog]; | ||||||
|  |   autoView( X_v , X, CpuRead); | ||||||
|  |   autoView( Y_v , Y, CpuRead); | ||||||
|  |   autoView( R_v , R, CpuWrite); | ||||||
|  |   thread_region | ||||||
|  |   { | ||||||
|  |     std::vector<vobj> s_x(Nblock); | ||||||
|  |  | ||||||
|  |     thread_loop_collapse2( (int n=0;n<nblock;n++),{ | ||||||
|  |       for(int b=0;b<block;b++){ | ||||||
|  | 	int o  = n*stride + b; | ||||||
|  |  | ||||||
|  | 	for(int i=0;i<Nblock;i++){ | ||||||
|  | 	  s_x[i] = X_v[o+i*ostride]; | ||||||
|  | 	} | ||||||
|  |  | ||||||
|  | 	vobj dot; | ||||||
|  | 	for(int i=0;i<Nblock;i++){ | ||||||
|  | 	  dot = Y_v[o+i*ostride]; | ||||||
|  | 	  for(int j=0;j<Nblock;j++){ | ||||||
|  | 	    dot = dot + s_x[j]*(scale*aa(j,i)); | ||||||
|  | 	  } | ||||||
|  | 	  R_v[o+i*ostride]=dot; | ||||||
|  | 	} | ||||||
|  |       }}); | ||||||
|  |   } | ||||||
|  | }; | ||||||
|  |  | ||||||
|  | template<class vobj> | ||||||
|  | static void sliceMulMatrix (Lattice<vobj> &R,Eigen::MatrixXcd &aa,const Lattice<vobj> &X,int Orthog,RealD scale=1.0)  | ||||||
|  | {     | ||||||
|  |   typedef typename vobj::scalar_object sobj; | ||||||
|  |   typedef typename vobj::scalar_type scalar_type; | ||||||
|  |   typedef typename vobj::vector_type vector_type; | ||||||
|  |  | ||||||
|  |   int Nblock = X.Grid()->GlobalDimensions()[Orthog]; | ||||||
|  |  | ||||||
|  |   GridBase *FullGrid  = X.Grid(); | ||||||
|  |   assert( FullGrid->_simd_layout[Orthog]==1); | ||||||
|  |  | ||||||
|  |   //FIXME package in a convenient iterator | ||||||
|  |   //Should loop over a plane orthogonal to direction "Orthog" | ||||||
|  |   int stride=FullGrid->_slice_stride[Orthog]; | ||||||
|  |   int block =FullGrid->_slice_block [Orthog]; | ||||||
|  |   int nblock=FullGrid->_slice_nblock[Orthog]; | ||||||
|  |   int ostride=FullGrid->_ostride[Orthog]; | ||||||
|  |  | ||||||
|  |   autoView( X_v , X, CpuRead); | ||||||
|  |   autoView( R_v , R, CpuWrite); | ||||||
|  |  | ||||||
|  |   thread_region | ||||||
|  |   { | ||||||
|  |     std::vector<vobj> s_x(Nblock); | ||||||
|  |      | ||||||
|  |     thread_loop_collapse2( (int n=0;n<nblock;n++),{ | ||||||
|  |       for(int b=0;b<block;b++){ | ||||||
|  | 	int o  = n*stride + b; | ||||||
|  |  | ||||||
|  | 	for(int i=0;i<Nblock;i++){ | ||||||
|  | 	  s_x[i] = X_v[o+i*ostride]; | ||||||
|  | 	} | ||||||
|  |  | ||||||
|  | 	vobj dot; | ||||||
|  | 	for(int i=0;i<Nblock;i++){ | ||||||
|  | 	  dot = s_x[0]*(scale*aa(0,i)); | ||||||
|  | 	  for(int j=1;j<Nblock;j++){ | ||||||
|  | 	    dot = dot + s_x[j]*(scale*aa(j,i)); | ||||||
|  | 	  } | ||||||
|  | 	  R_v[o+i*ostride]=dot; | ||||||
|  | 	} | ||||||
|  |     }}); | ||||||
|  |   } | ||||||
|  |  | ||||||
|  | }; | ||||||
|  |  | ||||||
|  |  | ||||||
|  | template<class vobj> | ||||||
|  | static void sliceInnerProductMatrix(  Eigen::MatrixXcd &mat, const Lattice<vobj> &lhs,const Lattice<vobj> &rhs,int Orthog)  | ||||||
|  | { | ||||||
|  |   typedef typename vobj::scalar_object sobj; | ||||||
|  |   typedef typename vobj::scalar_type scalar_type; | ||||||
|  |   typedef typename vobj::vector_type vector_type; | ||||||
|  |    | ||||||
|  |   GridBase *FullGrid  = lhs.Grid(); | ||||||
|  |   //  GridBase *SliceGrid = makeSubSliceGrid(FullGrid,Orthog); | ||||||
|  |    | ||||||
|  |   int Nblock = FullGrid->GlobalDimensions()[Orthog]; | ||||||
|  |    | ||||||
|  |   //  Lattice<vobj> Lslice(SliceGrid); | ||||||
|  |   //  Lattice<vobj> Rslice(SliceGrid); | ||||||
|  |    | ||||||
|  |   mat = Eigen::MatrixXcd::Zero(Nblock,Nblock); | ||||||
|  |  | ||||||
|  |   assert( FullGrid->_simd_layout[Orthog]==1); | ||||||
|  |   //  int nh =  FullGrid->_ndimension; | ||||||
|  |   //  int nl = SliceGrid->_ndimension; | ||||||
|  |   //  int nl = nh-1; | ||||||
|  |  | ||||||
|  |   //FIXME package in a convenient iterator | ||||||
|  |   //Should loop over a plane orthogonal to direction "Orthog" | ||||||
|  |   int stride=FullGrid->_slice_stride[Orthog]; | ||||||
|  |   int block =FullGrid->_slice_block [Orthog]; | ||||||
|  |   int nblock=FullGrid->_slice_nblock[Orthog]; | ||||||
|  |   int ostride=FullGrid->_ostride[Orthog]; | ||||||
|  |  | ||||||
|  |   typedef typename vobj::vector_typeD vector_typeD; | ||||||
|  |   autoView( lhs_v , lhs, CpuRead); | ||||||
|  |   autoView( rhs_v , rhs, CpuRead); | ||||||
|  |   thread_region { | ||||||
|  |     std::vector<vobj> Left(Nblock); | ||||||
|  |     std::vector<vobj> Right(Nblock); | ||||||
|  |     Eigen::MatrixXcd  mat_thread = Eigen::MatrixXcd::Zero(Nblock,Nblock); | ||||||
|  |  | ||||||
|  |     thread_loop_collapse2((int n=0;n<nblock;n++),{ | ||||||
|  |       for(int b=0;b<block;b++){ | ||||||
|  |  | ||||||
|  | 	int o  = n*stride + b; | ||||||
|  |  | ||||||
|  | 	for(int i=0;i<Nblock;i++){ | ||||||
|  | 	  Left [i] = lhs_v[o+i*ostride]; | ||||||
|  | 	  Right[i] = rhs_v[o+i*ostride]; | ||||||
|  | 	} | ||||||
|  |  | ||||||
|  | 	for(int i=0;i<Nblock;i++){ | ||||||
|  | 	  for(int j=0;j<Nblock;j++){ | ||||||
|  | 	    auto tmp = innerProduct(Left[i],Right[j]); | ||||||
|  | 	    auto rtmp = TensorRemove(tmp); | ||||||
|  | 	    ComplexD z = Reduce(rtmp); | ||||||
|  | 	    mat_thread(i,j) += std::complex<double>(real(z),imag(z)); | ||||||
|  | 	  }} | ||||||
|  |     }}); | ||||||
|  |     thread_critical { | ||||||
|  |       mat += mat_thread; | ||||||
|  |     }   | ||||||
|  |   } | ||||||
|  |  | ||||||
|  |   for(int i=0;i<Nblock;i++){ | ||||||
|  |     for(int j=0;j<Nblock;j++){ | ||||||
|  |       ComplexD sum = mat(i,j); | ||||||
|  |       FullGrid->GlobalSum(sum); | ||||||
|  |       mat(i,j)=sum; | ||||||
|  |     }} | ||||||
|  |  | ||||||
|  |   return; | ||||||
|  | } | ||||||
|  |  | ||||||
|  | NAMESPACE_END(Grid); | ||||||
|  |  | ||||||
|  |  | ||||||
|  |  | ||||||
							
								
								
									
										231
									
								
								Grid/lattice/Lattice_peekpoke.h
									
									
									
									
									
										Normal file
									
								
							
							
						
						
									
										231
									
								
								Grid/lattice/Lattice_peekpoke.h
									
									
									
									
									
										Normal file
									
								
							| @@ -0,0 +1,231 @@ | |||||||
|  | /************************************************************************************* | ||||||
|  |  | ||||||
|  |     Grid physics library, www.github.com/paboyle/Grid  | ||||||
|  |  | ||||||
|  |     Source file: ./lib/lattice/Lattice_peekpoke.h | ||||||
|  |  | ||||||
|  |     Copyright (C) 2015 | ||||||
|  |  | ||||||
|  | Author: Azusa Yamaguchi <ayamaguc@staffmail.ed.ac.uk> | ||||||
|  | Author: Peter Boyle <paboyle@ph.ed.ac.uk> | ||||||
|  | Author: Peter Boyle <peterboyle@Peters-MacBook-Pro-2.local> | ||||||
|  |  | ||||||
|  |     This program is free software; you can redistribute it and/or modify | ||||||
|  |     it under the terms of the GNU General Public License as published by | ||||||
|  |     the Free Software Foundation; either version 2 of the License, or | ||||||
|  |     (at your option) any later version. | ||||||
|  |  | ||||||
|  |     This program is distributed in the hope that it will be useful, | ||||||
|  |     but WITHOUT ANY WARRANTY; without even the implied warranty of | ||||||
|  |     MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the | ||||||
|  |     GNU General Public License for more details. | ||||||
|  |  | ||||||
|  |     You should have received a copy of the GNU General Public License along | ||||||
|  |     with this program; if not, write to the Free Software Foundation, Inc., | ||||||
|  |     51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. | ||||||
|  |  | ||||||
|  |     See the full license in the file "LICENSE" in the top level distribution directory | ||||||
|  | *************************************************************************************/ | ||||||
|  | /*  END LEGAL */ | ||||||
|  | #ifndef GRID_LATTICE_PEEK_H | ||||||
|  | #define GRID_LATTICE_PEEK_H | ||||||
|  |  | ||||||
|  | /////////////////////////////////////////////// | ||||||
|  | // Peeking and poking around | ||||||
|  | /////////////////////////////////////////////// | ||||||
|  |  | ||||||
|  | NAMESPACE_BEGIN(Grid); | ||||||
|  |  | ||||||
|  |  | ||||||
|  | // FIXME accelerator_loop and accelerator_inline these | ||||||
|  | //////////////////////////////////////////////////////////////////////////////////////////////////// | ||||||
|  | // Peek internal indices of a Lattice object | ||||||
|  | //////////////////////////////////////////////////////////////////////////////////////////////////// | ||||||
|  | template<int Index,class vobj>  | ||||||
|  | auto PeekIndex(const Lattice<vobj> &lhs,int i) -> Lattice<decltype(peekIndex<Index>(vobj(),i))> | ||||||
|  | { | ||||||
|  |   Lattice<decltype(peekIndex<Index>(vobj(),i))> ret(lhs.Grid()); | ||||||
|  |   ret.Checkerboard()=lhs.Checkerboard(); | ||||||
|  |   autoView( ret_v, ret, AcceleratorWrite); | ||||||
|  |   autoView( lhs_v, lhs, AcceleratorRead); | ||||||
|  |   accelerator_for( ss, lhs_v.size(), 1, { | ||||||
|  |     ret_v[ss] = peekIndex<Index>(lhs_v[ss],i); | ||||||
|  |   }); | ||||||
|  |   return ret; | ||||||
|  | }; | ||||||
|  | template<int Index,class vobj>  | ||||||
|  | auto PeekIndex(const Lattice<vobj> &lhs,int i,int j) -> Lattice<decltype(peekIndex<Index>(vobj(),i,j))> | ||||||
|  | { | ||||||
|  |   Lattice<decltype(peekIndex<Index>(vobj(),i,j))> ret(lhs.Grid()); | ||||||
|  |   ret.Checkerboard()=lhs.Checkerboard(); | ||||||
|  |   autoView( ret_v, ret, AcceleratorWrite); | ||||||
|  |   autoView( lhs_v, lhs, AcceleratorRead); | ||||||
|  |   accelerator_for( ss, lhs_v.size(), 1, { | ||||||
|  |     ret_v[ss] = peekIndex<Index>(lhs_v[ss],i,j); | ||||||
|  |   }); | ||||||
|  |   return ret; | ||||||
|  | }; | ||||||
|  |  | ||||||
|  | //////////////////////////////////////////////////////////////////////////////////////////////////// | ||||||
|  | // Poke internal indices of a Lattice object | ||||||
|  | //////////////////////////////////////////////////////////////////////////////////////////////////// | ||||||
|  | template<int Index,class vobj>   | ||||||
|  | void PokeIndex(Lattice<vobj> &lhs,const Lattice<decltype(peekIndex<Index>(vobj(),0))> & rhs,int i) | ||||||
|  | { | ||||||
|  |   autoView( rhs_v, rhs, AcceleratorRead); | ||||||
|  |   autoView( lhs_v, lhs, AcceleratorWrite); | ||||||
|  |   accelerator_for( ss, lhs_v.size(), 1, { | ||||||
|  |     pokeIndex<Index>(lhs_v[ss],rhs_v[ss],i); | ||||||
|  |   }); | ||||||
|  | } | ||||||
|  | template<int Index,class vobj>  | ||||||
|  | void PokeIndex(Lattice<vobj> &lhs,const Lattice<decltype(peekIndex<Index>(vobj(),0,0))> & rhs,int i,int j) | ||||||
|  | { | ||||||
|  |   autoView( rhs_v, rhs, AcceleratorRead); | ||||||
|  |   autoView( lhs_v, lhs, AcceleratorWrite); | ||||||
|  |   accelerator_for( ss, lhs_v.size(), 1, { | ||||||
|  |     pokeIndex<Index>(lhs_v[ss],rhs_v[ss],i,j); | ||||||
|  |   }); | ||||||
|  | } | ||||||
|  |  | ||||||
|  | ////////////////////////////////////////////////////// | ||||||
|  | // Poke a scalar object into the SIMD array | ||||||
|  | ////////////////////////////////////////////////////// | ||||||
|  | template<class vobj,class sobj>  | ||||||
|  | void pokeSite(const sobj &s,Lattice<vobj> &l,const Coordinate &site){ | ||||||
|  |  | ||||||
|  |   GridBase *grid=l.Grid(); | ||||||
|  |  | ||||||
|  |   typedef typename vobj::scalar_type scalar_type; | ||||||
|  |   typedef typename vobj::vector_type vector_type; | ||||||
|  |  | ||||||
|  |   int Nsimd = grid->Nsimd(); | ||||||
|  |  | ||||||
|  |   assert( l.Checkerboard()== l.Grid()->CheckerBoard(site)); | ||||||
|  |   assert( sizeof(sobj)*Nsimd == sizeof(vobj)); | ||||||
|  |  | ||||||
|  |   int rank,odx,idx; | ||||||
|  |   // Optional to broadcast from node 0. | ||||||
|  |   grid->GlobalCoorToRankIndex(rank,odx,idx,site); | ||||||
|  |   grid->Broadcast(grid->BossRank(),s); | ||||||
|  |  | ||||||
|  |   // extract-modify-merge cycle is easiest way and this is not perf critical | ||||||
|  |   ExtractBuffer<sobj> buf(Nsimd); | ||||||
|  |   autoView( l_v , l, CpuWrite); | ||||||
|  |   if ( rank == grid->ThisRank() ) { | ||||||
|  |     extract(l_v[odx],buf); | ||||||
|  |     buf[idx] = s; | ||||||
|  |     merge(l_v[odx],buf); | ||||||
|  |   } | ||||||
|  |  | ||||||
|  |   return; | ||||||
|  | }; | ||||||
|  |  | ||||||
|  |  | ||||||
|  | ////////////////////////////////////////////////////////// | ||||||
|  | // Peek a scalar object from the SIMD array | ||||||
|  | ////////////////////////////////////////////////////////// | ||||||
|  | template<class vobj,class sobj> | ||||||
|  | void peekSite(sobj &s,const Lattice<vobj> &l,const Coordinate &site){ | ||||||
|  |          | ||||||
|  |   GridBase *grid=l.Grid(); | ||||||
|  |  | ||||||
|  |   typedef typename vobj::scalar_type scalar_type; | ||||||
|  |   typedef typename vobj::vector_type vector_type; | ||||||
|  |  | ||||||
|  |   int Nsimd = grid->Nsimd(); | ||||||
|  |  | ||||||
|  |   assert( l.Checkerboard() == l.Grid()->CheckerBoard(site)); | ||||||
|  |  | ||||||
|  |   int rank,odx,idx; | ||||||
|  |   grid->GlobalCoorToRankIndex(rank,odx,idx,site); | ||||||
|  |  | ||||||
|  |   ExtractBuffer<sobj> buf(Nsimd); | ||||||
|  |   autoView( l_v , l, CpuWrite); | ||||||
|  |   extract(l_v[odx],buf); | ||||||
|  |  | ||||||
|  |   s = buf[idx]; | ||||||
|  |  | ||||||
|  |   grid->Broadcast(rank,s); | ||||||
|  |  | ||||||
|  |   return; | ||||||
|  | }; | ||||||
|  |  | ||||||
|  | ////////////////////////////////////////////////////////// | ||||||
|  | // Peek a scalar object from the SIMD array | ||||||
|  | ////////////////////////////////////////////////////////// | ||||||
|  | // Must be CPU read view | ||||||
|  | template<class vobj,class sobj> | ||||||
|  | inline void peekLocalSite(sobj &s,const LatticeView<vobj> &l,Coordinate &site) | ||||||
|  | { | ||||||
|  |   GridBase *grid = l.getGrid(); | ||||||
|  |   assert(l.mode==CpuRead); | ||||||
|  |   typedef typename vobj::scalar_type scalar_type; | ||||||
|  |   typedef typename vobj::vector_type vector_type; | ||||||
|  |  | ||||||
|  |   int Nsimd = grid->Nsimd(); | ||||||
|  |  | ||||||
|  |   assert( l.Checkerboard()== grid->CheckerBoard(site)); | ||||||
|  |   assert( sizeof(sobj)*Nsimd == sizeof(vobj)); | ||||||
|  |  | ||||||
|  |   static const int words=sizeof(vobj)/sizeof(vector_type); | ||||||
|  |   int odx,idx; | ||||||
|  |   idx= grid->iIndex(site); | ||||||
|  |   odx= grid->oIndex(site); | ||||||
|  |    | ||||||
|  |   scalar_type * vp = (scalar_type *)&l[odx]; | ||||||
|  |   scalar_type * pt = (scalar_type *)&s; | ||||||
|  |        | ||||||
|  |   for(int w=0;w<words;w++){ | ||||||
|  |     pt[w] = vp[idx+w*Nsimd]; | ||||||
|  |   } | ||||||
|  |        | ||||||
|  |   return; | ||||||
|  | }; | ||||||
|  | template<class vobj,class sobj> | ||||||
|  | inline void peekLocalSite(sobj &s,const Lattice<vobj> &l,Coordinate &site) | ||||||
|  | { | ||||||
|  |   autoView(lv,l,CpuRead); | ||||||
|  |   peekLocalSite(s,lv,site); | ||||||
|  |   return; | ||||||
|  | }; | ||||||
|  |  | ||||||
|  | // Must be CPU write view | ||||||
|  | template<class vobj,class sobj> | ||||||
|  | inline void pokeLocalSite(const sobj &s,LatticeView<vobj> &l,Coordinate &site) | ||||||
|  | { | ||||||
|  |   GridBase *grid=l.getGrid(); | ||||||
|  |   assert(l.mode==CpuWrite); | ||||||
|  |  | ||||||
|  |   typedef typename vobj::scalar_type scalar_type; | ||||||
|  |   typedef typename vobj::vector_type vector_type; | ||||||
|  |  | ||||||
|  |   int Nsimd = grid->Nsimd(); | ||||||
|  |  | ||||||
|  |   assert( l.Checkerboard()== grid->CheckerBoard(site)); | ||||||
|  |   assert( sizeof(sobj)*Nsimd == sizeof(vobj)); | ||||||
|  |  | ||||||
|  |   static const int words=sizeof(vobj)/sizeof(vector_type); | ||||||
|  |   int odx,idx; | ||||||
|  |   idx= grid->iIndex(site); | ||||||
|  |   odx= grid->oIndex(site); | ||||||
|  |  | ||||||
|  |   scalar_type * vp = (scalar_type *)&l[odx]; | ||||||
|  |   scalar_type * pt = (scalar_type *)&s; | ||||||
|  |   for(int w=0;w<words;w++){ | ||||||
|  |     vp[idx+w*Nsimd] = pt[w]; | ||||||
|  |   } | ||||||
|  |   return; | ||||||
|  | }; | ||||||
|  |  | ||||||
|  | template<class vobj,class sobj> | ||||||
|  | inline void pokeLocalSite(const sobj &s, Lattice<vobj> &l,Coordinate &site) | ||||||
|  | { | ||||||
|  |   autoView(lv,l,CpuWrite); | ||||||
|  |   pokeLocalSite(s,lv,site); | ||||||
|  |   return; | ||||||
|  | }; | ||||||
|  |  | ||||||
|  | NAMESPACE_END(Grid); | ||||||
|  | #endif | ||||||
|  |  | ||||||
							
								
								
									
										79
									
								
								Grid/lattice/Lattice_real_imag.h
									
									
									
									
									
										Normal file
									
								
							
							
						
						
									
										79
									
								
								Grid/lattice/Lattice_real_imag.h
									
									
									
									
									
										Normal file
									
								
							| @@ -0,0 +1,79 @@ | |||||||
|  | /************************************************************************************* | ||||||
|  |  | ||||||
|  |     Grid physics library, www.github.com/paboyle/Grid  | ||||||
|  |  | ||||||
|  |     Source file: ./lib/lattice/Lattice_reality.h | ||||||
|  |  | ||||||
|  |     Copyright (C) 2015 | ||||||
|  |  | ||||||
|  | Author: Azusa Yamaguchi <ayamaguc@staffmail.ed.ac.uk> | ||||||
|  | Author: Peter Boyle <paboyle@ph.ed.ac.uk> | ||||||
|  | Author: neo <cossu@post.kek.jp> | ||||||
|  |  | ||||||
|  |     This program is free software; you can redistribute it and/or modify | ||||||
|  |     it under the terms of the GNU General Public License as published by | ||||||
|  |     the Free Software Foundation; either version 2 of the License, or | ||||||
|  |     (at your option) any later version. | ||||||
|  |  | ||||||
|  |     This program is distributed in the hope that it will be useful, | ||||||
|  |     but WITHOUT ANY WARRANTY; without even the implied warranty of | ||||||
|  |     MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the | ||||||
|  |     GNU General Public License for more details. | ||||||
|  |  | ||||||
|  |     You should have received a copy of the GNU General Public License along | ||||||
|  |     with this program; if not, write to the Free Software Foundation, Inc., | ||||||
|  |     51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. | ||||||
|  |  | ||||||
|  |     See the full license in the file "LICENSE" in the top level distribution directory | ||||||
|  | *************************************************************************************/ | ||||||
|  | /*  END LEGAL */ | ||||||
|  | #ifndef GRID_LATTICE_REAL_IMAG_H | ||||||
|  | #define GRID_LATTICE_REAL_IMAG_H | ||||||
|  |  | ||||||
|  |  | ||||||
|  | // FIXME .. this is the sector of the code  | ||||||
|  | // I am most worried about the directions | ||||||
|  | // The choice of burying complex in the SIMD | ||||||
|  | // is making the use of "real" and "imag" very cumbersome | ||||||
|  |  | ||||||
|  | NAMESPACE_BEGIN(Grid); | ||||||
|  |  | ||||||
|  | template<class vobj> inline Lattice<vobj> real(const Lattice<vobj> &lhs){ | ||||||
|  |   Lattice<vobj> ret(lhs.Grid()); | ||||||
|  |  | ||||||
|  |   autoView( lhs_v, lhs, AcceleratorRead); | ||||||
|  |   autoView( ret_v, ret, AcceleratorWrite); | ||||||
|  |  | ||||||
|  |   ret.Checkerboard()=lhs.Checkerboard(); | ||||||
|  |   accelerator_for( ss, lhs_v.size(), 1, { | ||||||
|  |     ret_v[ss] =real(lhs_v[ss]); | ||||||
|  |   }); | ||||||
|  |   return ret; | ||||||
|  | }; | ||||||
|  | template<class vobj> inline Lattice<vobj> imag(const Lattice<vobj> &lhs){ | ||||||
|  |   Lattice<vobj> ret(lhs.Grid()); | ||||||
|  |  | ||||||
|  |   autoView( lhs_v, lhs, AcceleratorRead); | ||||||
|  |   autoView( ret_v, ret, AcceleratorWrite); | ||||||
|  |  | ||||||
|  |   ret.Checkerboard()=lhs.Checkerboard(); | ||||||
|  |   accelerator_for( ss, lhs_v.size(), 1, { | ||||||
|  |     ret_v[ss] =imag(lhs_v[ss]); | ||||||
|  |   }); | ||||||
|  |   return ret; | ||||||
|  | }; | ||||||
|  |  | ||||||
|  | template<class Expression,typename std::enable_if<is_lattice_expr<Expression>::value,void>::type * = nullptr>  | ||||||
|  |   auto real(const Expression &expr) -> decltype(real(closure(expr)))		 | ||||||
|  | {									 | ||||||
|  |   return real(closure(expr));					 | ||||||
|  | } | ||||||
|  | template<class Expression,typename std::enable_if<is_lattice_expr<Expression>::value,void>::type * = nullptr>  | ||||||
|  |   auto imag(const Expression &expr) -> decltype(imag(closure(expr)))		 | ||||||
|  | {									 | ||||||
|  |   return imag(closure(expr));					 | ||||||
|  | } | ||||||
|  |  | ||||||
|  | NAMESPACE_END(Grid); | ||||||
|  |  | ||||||
|  | #endif | ||||||
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